Genus | Begomovirus |
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NCBI Assembly | GCF_002986345.1 |
Isolate | India:North India |
Release date | 2018/8/26 |
Submitter | Kumar,Y., Walia,Y., Bhardwaj,P., Negi,A., Hallan,V., Zaidi,A.A. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_009508107.1 |
---|---|
Location | 145-510 |
Gene Name | AV2 |
Protein Name | pre-coat protein |
Coding Region | ATGTGGGACCCTTTAGTAAACGAGTTTCCCGAAACCGTTCACGGTTTTAGGTGTATGCTAGCAGTTAAATACCTGCGGTTAGTAGAAAATACGTATTCCCCAGATACTCTGGGCTACGATTTAATTAGGGATTTGATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTGAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGAGCATGGGCGAACAGGCCCATGAACCGAAAGCCCAAGATGTACAGGGTGTACAGAAGCCCAGATGTTCCGAGGGGATGTGA |
Protein Sequence | MWDPLVNEFPETVHGFRCMLAVKYLRLVENTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARLEGTPPSELRQPICEPCCCPHCPRHKGKSMGEQAHEPKAQDVQGVQKPRCSEGM |
NCBI Accession | YP_009508108.1 |
---|---|
Location | 305-1075 |
Gene Name | AV1 |
Protein Name | coat protein |
Coding Region | ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTGAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGAGCATGGGCGAACAGGCCCATGAACCGAAAGCCCAAGATGTACAGGGTGTACAGAAGCCCAGATGTTCCGAGGGGATGTGAAGGCCCGTGTAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTAATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACTCACCGGGTTGGCAAGAGGTTCTGTGTGAAGTCCGTTTATGTTTTGGGCAAGATCTGGATGGACGAGAACATCAAGACTAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGAGATCGTAGGCCTGTTGATAAGCCTCAAGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGGTATCAGGTGCTGAGAAAGTGGCATGCAACTGTCACCGGTGGTCAATATGCATCCAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCGTTGATGTTGTATATGGCGTGTACCCACGCCTCTAACCCTGTGTATGCTACATTGAAGATACGGATCTACTTCTATGATTCAGTATCGAATTAA |
Protein Sequence | MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWANRPMNRKPKMYRVYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN |
NCBI Accession | YP_009508109.1 |
---|---|
Location | 1072-1476 |
Gene Name | AC3 |
Protein Name | replication enhancer protein |
Coding Region | ATGGATTCACGCACAGAGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATACCTGGGAGGTTCCAAATCCCCTGTATTTCAAGATAACAGAGCACCACAACAGGCCATTCCTGATGAACAAAGACATCATAACCGTCCAAGTCCAGTTCAACCACAACCTGAGGAAAGCGTTGGGGATTCACAAATGTTTCATAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAAGACCCAAGTTATTAAGTATTTAGATAATTTAGGAGTTATCAGTATTAACAATGTAGTTAGAGCAGTTGATCATGTATTATGGAATGTATTACATCATGTTGTATATGTAGAACAATCATATTCAATAAAATTTAATCTTTATTAA |
Protein Sequence | MDSRTEEPITAAQAENGVYTWEVPNPLYFKITEHHNRPFLMNKDIITVQVQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFKTQVIKYLDNLGVISINNVVRAVDHVLWNVLHHVVYVEQSYSIKFNLY |
NCBI Accession | YP_009508110.1 |
---|---|
Location | 1217-1624 |
Gene Name | AC2 |
Protein Name | transcriptional activator protein |
Coding Region | ATGCAACCTTCATCACCCTCGAAGAGCCACTATACTCAGGTACCAATCAAGGTCCAACACAGAGCTGCTAAGCGTAGAGCCATCCGGCGTAAGAGGGTTGATCTAAACTGTGGGTGCTCATACTACGTACACATCGACTGCCACAAATATGGATTCACGCACAGAGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATACCTGGGAGGTTCCAAATCCCCTGTATTTCAAGATAACAGAGCACCACAACAGGCCATTCCTGATGAACAAAGACATCATAACCGTCCAAGTCCAGTTCAACCACAACCTGAGGAAAGCGTTGGGGATTCACAAATGTTTCATAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAA |
Protein Sequence | MQPSSPSKSHYTQVPIKVQHRAAKRRAIRRKRVDLNCGCSYYVHIDCHKYGFTHRGTHHCSSSREWRVYLGGSKSPVFQDNRAPQQAIPDEQRHHNRPSPVQPQPEESVGDSQMFHSLPNLDDLTASDWSFLKGL |
NCBI Accession | YP_009508111.1 |
---|---|
Location | 1554-2612 |
Gene Name | AC1 |
Protein Name | replication initiator protein |
Coding Region | ATGCCTCGTGCTCATCAGTTCCAAGTTAAAGCCAAAAATATCTTCCTTACTTATCCAAAATGCCCAATACCCAAAGAGCAAATGCTCGAACTCCTAAAAAACGTTTCTTGTCCTTCTGATAAATTATTTATCAGAGTGTCACAGGAAAAACACCAAGATGGGTCTCTGCATATCCATGCCCTCATCCAATTCAAAGGTAAATCCCAATTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATACATCAACCCAATTCCACCCAAACTTCCAGGGAGCAAAGTCCAGCTCCGATGTCAAGTCCTATATCGAGAAGGACGGTGATTACATCGACTGGGGTCAGTTTCAGGTCGATGGACGATCTGCTCGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCCTAAATGCAGGTTCAGCTGAAGCAGCTCTAGCAATTATTAGGGAGAAACTCCCGAAAGATTTTATTTTTCAATATCATAATTTAAAAACTAATTTAGATAGGATTTTTACACCTCCAGTGGAGGTTTATGTTCCCCCATTTCTTTCTTCTTCGTTCGATCAGGTTCCAGAGGCCATAGAGGAATGGGCCTCTGAAAATGTGATGGGTCCCGCTGCGCGGCCATTGAGACCTAAAAGTATCGTCATTGAGGGTGATAGTCGTACAGGCAAGACAATGTGGGCCAGGTCTTTGGGACCACACAATTATTTATGCGGCCATTTAGATCTGAGTCCCAAGATATATTCAAATGATGCCTGGTACAACGTCATTGATGACGTAGATCCCCACTACCTAAAGCACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACCAAGTACGGGAAGCCAGTTCAAATTAAAGGGGGCATTCCCACTATCTTCCTCTGCAATCCTGGGCCCAATTCCAGCTATAAAGAATTCCTCGATGAGGAAAAGAACTCAGCACTGAGGTCGTGGGCAATACATAATGCAACCTTCATCACCCTCGAAGAGCCACTATACTCAGGTACCAATCAAGGTCCAACACAGAGCTGCTAA |
Protein Sequence | MPRAHQFQVKAKNIFLTYPKCPIPKEQMLELLKNVSCPSDKLFIRVSQEKHQDGSLHIHALIQFKGKSQFRNPRHFDVTHPNTSTQFHPNFQGAKSSSDVKSYIEKDGDYIDWGQFQVDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQYHNLKTNLDRIFTPPVEVYVPPFLSSSFDQVPEAIEEWASENVMGPAARPLRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALRSWAIHNATFITLEEPLYSGTNQGPTQSC |
NCBI Accession | YP_009508112.1 |
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Location | 2198-2455 |
Gene Name | AC4 |
Protein Name | AC4 protein |
Coding Region | ATGGGTCTCTGCATATCCATGCCCTCATCCAATTCAAAGGTAAATCCCAATTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATACATCAACCCAATTCCACCCAAACTTCCAGGGAGCAAAGTCCAGCTCCGATGTCAAGTCCTATATCGAGAAGGACGGTGATTACATCGACTGGGGTCAGTTTCAGGTCGATGGACGATCTGCTCGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCCTAA |
Protein Sequence | MGLCISMPSSNSKVNPNSETPDISMSLTLIHQPNSTQTSREQSPAPMSSPISRRTVITSTGVSFRSMDDLLEEVNRQLMMLQQRP |
1 |
Chilli leaf curl disease populations in India are highly recombinant, and rapidly segregated. Pandey V, et al. 3 Biotech. 2022 Mar;12(3):83. doi: 10.1007/s13205-022-03139-w. Epub 2022 Feb 28. PMID: 35251885 |
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2 |
Nalla MK, et al. Front Plant Sci. 2023 Oct 23;14:1223982. doi: 10.3389/fpls.2023.1223982. eCollection 2023. PMID: 37936944 |
3 |
Mishra M, et al. 3 Biotech. 2020 Apr;10(4):169. doi: 10.1007/s13205-020-2159-9. Epub 2020 Mar 16. PMID: 32206503 |
4 |
First Report of Chilli leaf curl India virus Infecting Mentha spicata (Neera) in India. Saeed ST, et al. Plant Dis. 2014 Jan;98(1):164. doi: 10.1094/PDIS-07-13-0750-PDN. PMID: 30708610 |
5 |
Role of Diversity and Recombination in the Emergence of Chilli Leaf Curl Virus. Mishra M, et al. Pathogens. 2022 Apr 30;11(5):529. doi: 10.3390/pathogens11050529. PMID: 35631050 |
6 |
Prasad KSUD, et al. Virusdisease. 2024 Sep;35(3):484-495. doi: 10.1007/s13337-024-00891-w. Epub 2024 Sep 16. PMID: 39464737 |
7 |
Krishnan N, et al. Physiol Mol Biol Plants. 2025 Aug;31(8):1363-1374. doi: 10.1007/s12298-025-01570-w. Epub 2025 Mar 7. PMID: 41080515 |
8 |
Krishnan N, et al. J Virol Methods. 2022 Apr;302:114474. doi: 10.1016/j.jviromet.2022.114474. Epub 2022 Jan 22. PMID: 35077721 |
9 |
Exploring Host Resistance against Chilli Leaf Curl Disease in a Tolerant Chilli Genotype. Mangal M, et al. Plants (Basel). 2024 Jun 14;13(12):1647. doi: 10.3390/plants13121647. PMID: 38931079 |
10 |
Sravya G, et al. Theory Biosci. 2023 Feb;142(1):47-60. doi: 10.1007/s12064-022-00383-9. Epub 2023 Jan 6. PMID: 36607541 |