Genus | Begomovirus |
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NCBI Assembly | GCF_002986345.1 |
Isolate | India:North India |
Release date | 2018/8/26 |
Submitter | Kumar,Y., Walia,Y., Bhardwaj,P., Negi,A., Hallan,V., Zaidi,A.A. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_009508107.1 |
---|---|
Location | 145-510 |
Gene Name | AV2 |
Protein Name | pre-coat protein |
Coding Region | ATGTGGGACCCTTTAGTAAACGAGTTTCCCGAAACCGTTCACGGTTTTAGGTGTATGCTAGCAGTTAAATACCTGCGGTTAGTAGAAAATACGTATTCCCCAGATACTCTGGGCTACGATTTAATTAGGGATTTGATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTGAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGAGCATGGGCGAACAGGCCCATGAACCGAAAGCCCAAGATGTACAGGGTGTACAGAAGCCCAGATGTTCCGAGGGGATGTGA |
Protein Sequence | MWDPLVNEFPETVHGFRCMLAVKYLRLVENTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARLEGTPPSELRQPICEPCCCPHCPRHKGKSMGEQAHEPKAQDVQGVQKPRCSEGM |
NCBI Accession | YP_009508108.1 |
---|---|
Location | 305-1075 |
Gene Name | AV1 |
Protein Name | coat protein |
Coding Region | ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTGAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGAGCATGGGCGAACAGGCCCATGAACCGAAAGCCCAAGATGTACAGGGTGTACAGAAGCCCAGATGTTCCGAGGGGATGTGAAGGCCCGTGTAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTAATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACTCACCGGGTTGGCAAGAGGTTCTGTGTGAAGTCCGTTTATGTTTTGGGCAAGATCTGGATGGACGAGAACATCAAGACTAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGAGATCGTAGGCCTGTTGATAAGCCTCAAGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGGTATCAGGTGCTGAGAAAGTGGCATGCAACTGTCACCGGTGGTCAATATGCATCCAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCGTTGATGTTGTATATGGCGTGTACCCACGCCTCTAACCCTGTGTATGCTACATTGAAGATACGGATCTACTTCTATGATTCAGTATCGAATTAA |
Protein Sequence | MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWANRPMNRKPKMYRVYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN |
NCBI Accession | YP_009508109.1 |
---|---|
Location | 1072-1476 |
Gene Name | AC3 |
Protein Name | replication enhancer protein |
Coding Region | ATGGATTCACGCACAGAGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATACCTGGGAGGTTCCAAATCCCCTGTATTTCAAGATAACAGAGCACCACAACAGGCCATTCCTGATGAACAAAGACATCATAACCGTCCAAGTCCAGTTCAACCACAACCTGAGGAAAGCGTTGGGGATTCACAAATGTTTCATAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAAGACCCAAGTTATTAAGTATTTAGATAATTTAGGAGTTATCAGTATTAACAATGTAGTTAGAGCAGTTGATCATGTATTATGGAATGTATTACATCATGTTGTATATGTAGAACAATCATATTCAATAAAATTTAATCTTTATTAA |
Protein Sequence | MDSRTEEPITAAQAENGVYTWEVPNPLYFKITEHHNRPFLMNKDIITVQVQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFKTQVIKYLDNLGVISINNVVRAVDHVLWNVLHHVVYVEQSYSIKFNLY |
NCBI Accession | YP_009508110.1 |
---|---|
Location | 1217-1624 |
Gene Name | AC2 |
Protein Name | transcriptional activator protein |
Coding Region | ATGCAACCTTCATCACCCTCGAAGAGCCACTATACTCAGGTACCAATCAAGGTCCAACACAGAGCTGCTAAGCGTAGAGCCATCCGGCGTAAGAGGGTTGATCTAAACTGTGGGTGCTCATACTACGTACACATCGACTGCCACAAATATGGATTCACGCACAGAGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATACCTGGGAGGTTCCAAATCCCCTGTATTTCAAGATAACAGAGCACCACAACAGGCCATTCCTGATGAACAAAGACATCATAACCGTCCAAGTCCAGTTCAACCACAACCTGAGGAAAGCGTTGGGGATTCACAAATGTTTCATAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAA |
Protein Sequence | MQPSSPSKSHYTQVPIKVQHRAAKRRAIRRKRVDLNCGCSYYVHIDCHKYGFTHRGTHHCSSSREWRVYLGGSKSPVFQDNRAPQQAIPDEQRHHNRPSPVQPQPEESVGDSQMFHSLPNLDDLTASDWSFLKGL |
NCBI Accession | YP_009508111.1 |
---|---|
Location | 1554-2612 |
Gene Name | AC1 |
Protein Name | replication initiator protein |
Coding Region | ATGCCTCGTGCTCATCAGTTCCAAGTTAAAGCCAAAAATATCTTCCTTACTTATCCAAAATGCCCAATACCCAAAGAGCAAATGCTCGAACTCCTAAAAAACGTTTCTTGTCCTTCTGATAAATTATTTATCAGAGTGTCACAGGAAAAACACCAAGATGGGTCTCTGCATATCCATGCCCTCATCCAATTCAAAGGTAAATCCCAATTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATACATCAACCCAATTCCACCCAAACTTCCAGGGAGCAAAGTCCAGCTCCGATGTCAAGTCCTATATCGAGAAGGACGGTGATTACATCGACTGGGGTCAGTTTCAGGTCGATGGACGATCTGCTCGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCCTAAATGCAGGTTCAGCTGAAGCAGCTCTAGCAATTATTAGGGAGAAACTCCCGAAAGATTTTATTTTTCAATATCATAATTTAAAAACTAATTTAGATAGGATTTTTACACCTCCAGTGGAGGTTTATGTTCCCCCATTTCTTTCTTCTTCGTTCGATCAGGTTCCAGAGGCCATAGAGGAATGGGCCTCTGAAAATGTGATGGGTCCCGCTGCGCGGCCATTGAGACCTAAAAGTATCGTCATTGAGGGTGATAGTCGTACAGGCAAGACAATGTGGGCCAGGTCTTTGGGACCACACAATTATTTATGCGGCCATTTAGATCTGAGTCCCAAGATATATTCAAATGATGCCTGGTACAACGTCATTGATGACGTAGATCCCCACTACCTAAAGCACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACCAAGTACGGGAAGCCAGTTCAAATTAAAGGGGGCATTCCCACTATCTTCCTCTGCAATCCTGGGCCCAATTCCAGCTATAAAGAATTCCTCGATGAGGAAAAGAACTCAGCACTGAGGTCGTGGGCAATACATAATGCAACCTTCATCACCCTCGAAGAGCCACTATACTCAGGTACCAATCAAGGTCCAACACAGAGCTGCTAA |
Protein Sequence | MPRAHQFQVKAKNIFLTYPKCPIPKEQMLELLKNVSCPSDKLFIRVSQEKHQDGSLHIHALIQFKGKSQFRNPRHFDVTHPNTSTQFHPNFQGAKSSSDVKSYIEKDGDYIDWGQFQVDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQYHNLKTNLDRIFTPPVEVYVPPFLSSSFDQVPEAIEEWASENVMGPAARPLRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALRSWAIHNATFITLEEPLYSGTNQGPTQSC |
NCBI Accession | YP_009508112.1 |
---|---|
Location | 2198-2455 |
Gene Name | AC4 |
Protein Name | AC4 protein |
Coding Region | ATGGGTCTCTGCATATCCATGCCCTCATCCAATTCAAAGGTAAATCCCAATTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATACATCAACCCAATTCCACCCAAACTTCCAGGGAGCAAAGTCCAGCTCCGATGTCAAGTCCTATATCGAGAAGGACGGTGATTACATCGACTGGGGTCAGTTTCAGGTCGATGGACGATCTGCTCGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCCTAA |
Protein Sequence | MGLCISMPSSNSKVNPNSETPDISMSLTLIHQPNSTQTSREQSPAPMSSPISRRTVITSTGVSFRSMDDLLEEVNRQLMMLQQRP |
1 |
Chilli leaf curl disease populations in India are highly recombinant, and rapidly segregated. Pandey V, et al. 3 Biotech. 2022 Mar;12(3):83. doi: 10.1007/s13205-022-03139-w. Epub 2022 Feb 28. PMID: 35251885 |
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2 |
Role of Diversity and Recombination in the Emergence of Chilli Leaf Curl Virus. Mishra M, et al. Pathogens. 2022 Apr 30;11(5):529. doi: 10.3390/pathogens11050529. PMID: 35631050 |
3 |
Krishnan N, et al. J Virol Methods. 2022 Apr;302:114474. doi: 10.1016/j.jviromet.2022.114474. Epub 2022 Jan 22. PMID: 35077721 |
4 |
Nalla MK, et al. Front Plant Sci. 2023 Oct 23;14:1223982. doi: 10.3389/fpls.2023.1223982. eCollection 2023. PMID: 37936944 |
5 |
Yogindran S, et al. Mol Biol Rep. 2021 Mar;48(3):2143-2152. doi: 10.1007/s11033-021-06223-1. Epub 2021 Feb 26. PMID: 33635470 |
6 |
Kushwaha NK, et al. Physiol Mol Biol Plants. 2019 Sep;25(5):1185-1196. doi: 10.1007/s12298-019-00693-1. Epub 2019 Aug 22. PMID: 31564781 |
7 |
Mishra M, et al. 3 Biotech. 2020 Apr;10(4):169. doi: 10.1007/s13205-020-2159-9. Epub 2020 Mar 16. PMID: 32206503 |
8 |
First Report of Chilli leaf curl India virus Infecting Mentha spicata (Neera) in India. Saeed ST, et al. Plant Dis. 2014 Jan;98(1):164. doi: 10.1094/PDIS-07-13-0750-PDN. PMID: 30708610 |
9 |
Sravya G, et al. Theory Biosci. 2023 Feb;142(1):47-60. doi: 10.1007/s12064-022-00383-9. Epub 2023 Jan 6. PMID: 36607541 |
10 |
Khan ZA, et al. Arch Virol. 2017 Feb;162(2):561-565. doi: 10.1007/s00705-016-3096-0. Epub 2016 Oct 13. PMID: 27738844 |