Tobacco yellow dwarf virus
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_000840085.1 |
| Release date |
2015/2/12 |
| Submitter |
Morris,B.A., Richardson,K.A., Haley,A., Zhan,X., Thomas,J.E. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ATTAAGGCTCAAGTACCGTACGATGAAACTCTATTCTTAACTAGTGAGTGAGCCAGTGAGCCAGGTTTATGTGGCATTTATATTGGTAGGTGGACCGTTAGGATCTTGACGCGTGGGGCACACTCACGGATTTTAATATTACCCGTGAGTGCTCTCTTGGCCCCACGCGAGCCCTTTAGGGCGAGCGAAAGTGCGCCGTAGTTTCCTTTAGTGGTTCATGAGTCATTATAGTGCTATATAAAGATGATGTGACATCCCAAAGTTGAAAATGTATCCCGCCAAATACCAAGTGGTCCCATCTGGTATAAATTACTCAGATACCCCTGTTGGTACTTTTGAGCAATATCAGCCGCAGAAAGCGGGTGAGTCATCGGAGCACTTCTTTTCGAAAGTTGTTGTTGCTTTGATTGTTATCCTTTTTGCTGTAGGTATCGTATACTTAGCGTATACGTTATTCTTGAAGGATTTGATCCTTCTTTTGAAAGCAAAGAAGCAGAAGACGACAACTGAGATAGGGTTTGGTAATACCCCTCTCAGAAGACCTGGTGAAGGAAACCCTAATGGCGGGCCGGTATAAGGGTTTGGTTTATTCCCGGAAAAGGGGACGTTATGGCAAGACCTATCAGGCTCTTGGCGTGAAATCACAAAGAGAATTGGAGCAGCTAGTTAACCAACCAGGCCGTCCTGTTTCTAACAGGCGTCCTGCTCTACAGGTCGCAGAGTATCTGTGGACGACGAATAAAACAGGAATGACGTTTTCTCCTGGTGGGTCTACTTTCCTCATCACTAATTTCCCTCAAGGGGCGAACGAGAACTGTAGGCACACCAACCGGACAATTACCTACAAGATGGCTGTGAAGACGTGGGTTGCTTTGGATGGCTCGATGTTCTCTAGGGTTTCAAAATTCCCAATCTATTTCTGGTTGGTGTATGATAAAAACCCTGGCGAGAGTAATCCATCGCCTTCCGCTATTTTTGATAGTCTATATCAAGATCAGCCTGGGACTTGGACTGTGACTCGTAATGTATGTCACAGGTTTGTCGTTAAAAAAACCTGGTCATGTATGTTGGAGTCTAATGGAGTTGACCCTAATGCTAAACAAGGGTCTTCTTACTATGGTCCTGGGCCTTGTTATCAGTGGAGGCATGTTACTAAGTTTTTTAAACGTTTAGGGGTTAGCACAGAGTGGAAGAATTCTTCCACTGGTGATGTTGCTGATATTAAGGAAGGAGCACTATACCTTGTATGTGCTCCTGGTGGTGGTGCTACTGTAAGAGTTGGCGGTAGATTCCGCATGTATTTCAAATCAGTTGGCAATCAATAAAAATGTCGTTATTTTGATTTCATATTAATGAGCTTCAGTGTAGAGAAATTCAAATCTTATTAATAAAAACCCGGAATACAAAAACACACGAAAACGAAAAAAAGACACCTTACAATCATTACACACTATATACCCTCCTATGAGGAGAGGCACGTTCAGTGACTCGACGATTCAGGAGCAAAAAATGTTTCCGCCGCATACATAAAATGCGTAATACAATTGGCTTCAAAGTATTCAATCTGAGCGGGAGACATATTCTTCAGCCAGTCTTCATCGTCGTTACATAGTATAATACATGGCACTCCTCCCTTTATTTTCTTCTTTTTTCCATACTTAGGGTTGACAGTAAAATCAGACTGGCAACCTATTAATTGCTTCCAGAGTGGGACGAATTTGAAGGGGATGTCGTCGATGACGTTGTAGGTCGCGTGGTCATCATAGACAGTGAAGTCGATGGTCCCATTCCAGTAATTGTGCCTTCCGAGGCTTCTGGCCCATGTTGTCTTTCCGGTACGACTTGGTCCGCAGATGTAGAGGGAGGGGATCCTGGTTCCAGCCCTTCTAGGTTCCTGGATATGTCGTCCATCCAAACTAAGTCAGAGTGTGCTTCAACAAGTGTGACGTTATGAACTAGACGGTAAGCATCTACACTTACGTGGTATAGATGCTGGTCTCTCCATAACTGCAGATCTTCATGACATTGGAGATCTTCCTCAGTGAATGTGGCCTGGTAGATTTCAGGTTGTGGTGGAAATAGTTTATTTGCAGAGTATTCCAACCACTGTAATTTTGTTGCCCATTCATGAGGAAATTCATCCTTTATCATGTCCAGATATTCCTCTTTAGAAGTCGCAGTCTGGATAATAGTTCGCCATCGCTCATCAGATTTGGAAGGGGAGACTCTGTGTTTCTTGAACTCTCCTTTGGTGATGACGTTTCCGTCTTTGGAGATGTATTCAAGAACTTGTTCAGAGTTTTTAGCTGGTTGGATATTTGGATGGTTTCCTTCAAGATCAAAAAAAGAAGGGTCACGTATATTGCTTCTTTTGTCAAGCTGTATAAGGCAGTGAAGATGGGGAGTACCATCCTGGTGGAGTTCAGTAGCAATAGCGATAAAGAAAATAGCAAAACGTGAAAGTTTATCCCAGAGGAAATCTCTGAGATTTTCTGCACTAGAGCTGCAGCGTGGATAAGTAAGGAAGACATATTTGGTTTGGAGTCTGAAGGATTTGGTTTTCTGGGGGGCTGAAGGCAT
Gene Information
|
NCBI Accession
|
NP_620724.1
|
|
Location
|
269-577 |
|
Gene Name
|
V1 |
|
Protein Name
|
movement protein |
|
Coding Region
|
ATGTATCCCGCCAAATACCAAGTGGTCCCATCTGGTATAAATTACTCAGATACCCCTGTTGGTACTTTTGAGCAATATCAGCCGCAGAAAGCGGGTGAGTCATCGGAGCACTTCTTTTCGAAAGTTGTTGTTGCTTTGATTGTTATCCTTTTTGCTGTAGGTATCGTATACTTAGCGTATACGTTATTCTTGAAGGATTTGATCCTTCTTTTGAAAGCAAAGAAGCAGAAGACGACAACTGAGATAGGGTTTGGTAATACCCCTCTCAGAAGACCTGGTGAAGGAAACCCTAATGGCGGGCCGGTATAA |
|
Protein Sequence
|
MYPAKYQVVPSGINYSDTPVGTFEQYQPQKAGESSEHFFSKVVVALIVILFAVGIVYLAYTLFLKDLILLLKAKKQKTTTEIGFGNTPLRRPGEGNPNGGPV |
|
NCBI Accession
|
NP_620725.1
|
|
Location
|
561-1325 |
|
Gene Name
|
V2 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGGCGGGCCGGTATAAGGGTTTGGTTTATTCCCGGAAAAGGGGACGTTATGGCAAGACCTATCAGGCTCTTGGCGTGAAATCACAAAGAGAATTGGAGCAGCTAGTTAACCAACCAGGCCGTCCTGTTTCTAACAGGCGTCCTGCTCTACAGGTCGCAGAGTATCTGTGGACGACGAATAAAACAGGAATGACGTTTTCTCCTGGTGGGTCTACTTTCCTCATCACTAATTTCCCTCAAGGGGCGAACGAGAACTGTAGGCACACCAACCGGACAATTACCTACAAGATGGCTGTGAAGACGTGGGTTGCTTTGGATGGCTCGATGTTCTCTAGGGTTTCAAAATTCCCAATCTATTTCTGGTTGGTGTATGATAAAAACCCTGGCGAGAGTAATCCATCGCCTTCCGCTATTTTTGATAGTCTATATCAAGATCAGCCTGGGACTTGGACTGTGACTCGTAATGTATGTCACAGGTTTGTCGTTAAAAAAACCTGGTCATGTATGTTGGAGTCTAATGGAGTTGACCCTAATGCTAAACAAGGGTCTTCTTACTATGGTCCTGGGCCTTGTTATCAGTGGAGGCATGTTACTAAGTTTTTTAAACGTTTAGGGGTTAGCACAGAGTGGAAGAATTCTTCCACTGGTGATGTTGCTGATATTAAGGAAGGAGCACTATACCTTGTATGTGCTCCTGGTGGTGGTGCTACTGTAAGAGTTGGCGGTAGATTCCGCATGTATTTCAAATCAGTTGGCAATCAATAA |
|
Protein Sequence
|
MAGRYKGLVYSRKRGRYGKTYQALGVKSQRELEQLVNQPGRPVSNRRPALQVAEYLWTTNKTGMTFSPGGSTFLITNFPQGANENCRHTNRTITYKMAVKTWVALDGSMFSRVSKFPIYFWLVYDKNPGESNPSPSAIFDSLYQDQPGTWTVTRNVCHRFVVKKTWSCMLESNGVDPNAKQGSSYYGPGPCYQWRHVTKFFKRLGVSTEWKNSSTGDVADIKEGALYLVCAPGGGATVRVGGRFRMYFKSVGNQ |
|
NCBI Accession
|
NP_620726.1
|
|
Location
|
1481-1894,1981-2580 |
|
Gene Name
|
C2 |
|
Protein Name
|
polymerase |
|
Coding Region
|
ATGCCTTCAGCCCCCCAGAAAACCAAATCCTTCAGACTCCAAACCAAATATGTCTTCCTTACTTATCCACGCTGCAGCTCTAGTGCAGAAAATCTCAGAGATTTCCTCTGGGATAAACTTTCACGTTTTGCTATTTTCTTTATCGCTATTGCTACTGAACTCCACCAGGATGGTACTCCCCATCTTCACTGCCTTATACAGCTTGACAAAAGAAGCAATATACGTGACCCTTCTTTTTTTGATCTTGAAGGAAACCATCCAAATATCCAACCAGCTAAAAACTCTGAACAAGTTCTTGAATACATCTCCAAAGACGGAAACGTCATCACCAAAGGAGAGTTCAAGAAACACAGAGTCTCCCCTTCCAAATCTGATGAGCGATGGCGAACTATTATCCAGACTGCGACTTCTAAAGAGGAATATCTGGACATGATAAAGGATGAATTTCCTCATGAATGGGCAACAAAATTACAGTGGTTGGAATACTCTGCAAATAAACTATTTCCACCACAACCTGAAATCTACCAGGCCACATTCACTGAGGAAGATCTCCAATGTCATGAAGATCTGCAGTTATGGAGAGACCAGCATCTATACCACGAACCTAGAAGGGCTGGAACCAGGATCCCCTCCCTCTACATCTGCGGACCAAGTCGTACCGGAAAGACAACATGGGCCAGAAGCCTCGGAAGGCACAATTACTGGAATGGGACCATCGACTTCACTGTCTATGATGACCACGCGACCTACAACGTCATCGACGACATCCCCTTCAAATTCGTCCCACTCTGGAAGCAATTAATAGGTTGCCAGTCTGATTTTACTGTCAACCCTAAGTATGGAAAAAAGAAGAAAATAAAGGGAGGAGTGCCATGTATTATACTATGTAACGACGATGAAGACTGGCTGAAGAATATGTCTCCCGCTCAGATTGAATACTTTGAAGCCAATTGTATTACGCATTTTATGTATGCGGCGGAAACATTTTTTGCTCCTGAATCGTCGAGTCACTGA |
|
Protein Sequence
|
MPSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAIFFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISKDGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYSANKLFPPQPEIYQATFTEEDLQCHEDLQLWRDQHLYHEPRRAGTRIPSLYICGPSRTGKTTWARSLGRHNYWNGTIDFTVYDDHATYNVIDDIPFKFVPLWKQLIGCQSDFTVNPKYGKKKKIKGGVPCIILCNDDEDWLKNMSPAQIEYFEANCITHFMYAAETFFAPESSSH |
|
NCBI Accession
|
NP_620727.1
|
|
Location
|
1693-2580 |
|
Gene Name
|
C1 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGCCTTCAGCCCCCCAGAAAACCAAATCCTTCAGACTCCAAACCAAATATGTCTTCCTTACTTATCCACGCTGCAGCTCTAGTGCAGAAAATCTCAGAGATTTCCTCTGGGATAAACTTTCACGTTTTGCTATTTTCTTTATCGCTATTGCTACTGAACTCCACCAGGATGGTACTCCCCATCTTCACTGCCTTATACAGCTTGACAAAAGAAGCAATATACGTGACCCTTCTTTTTTTGATCTTGAAGGAAACCATCCAAATATCCAACCAGCTAAAAACTCTGAACAAGTTCTTGAATACATCTCCAAAGACGGAAACGTCATCACCAAAGGAGAGTTCAAGAAACACAGAGTCTCCCCTTCCAAATCTGATGAGCGATGGCGAACTATTATCCAGACTGCGACTTCTAAAGAGGAATATCTGGACATGATAAAGGATGAATTTCCTCATGAATGGGCAACAAAATTACAGTGGTTGGAATACTCTGCAAATAAACTATTTCCACCACAACCTGAAATCTACCAGGCCACATTCACTGAGGAAGATCTCCAATGTCATGAAGATCTGCAGTTATGGAGAGACCAGCATCTATACCACGTAAGTGTAGATGCTTACCGTCTAGTTCATAACGTCACACTTGTTGAAGCACACTCTGACTTAGTTTGGATGGACGACATATCCAGGAACCTAGAAGGGCTGGAACCAGGATCCCCTCCCTCTACATCTGCGGACCAAGTCGTACCGGAAAGACAACATGGGCCAGAAGCCTCGGAAGGCACAATTACTGGAATGGGACCATCGACTTCACTGTCTATGATGACCACGCGACCTACAACGTCATCGACGACATCCCCTTCAAATTCGTCCCACTCTGGAAGCAATTAA |
|
Protein Sequence
|
MPSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAIFFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISKDGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYSANKLFPPQPEIYQATFTEEDLQCHEDLQLWRDQHLYHVSVDAYRLVHNVTLVEAHSDLVWMDDISRNLEGLEPGSPPSTSADQVVPERQHGPEASEGTITGMGPSTSLSMMTTRPTTSSTTSPSNSSHSGSN |