Tobacco yellow dwarf virus

Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000840085.1
Release date 2015/2/12
Submitter Morris,B.A., Richardson,K.A., Haley,A., Zhan,X., Thomas,J.E.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_003822
ATTAAGGCTCAAGTACCGTACGATGAAACTCTATTCTTAACTAGTGAGTGAGCCAGTGAGCCAGGTTTATGTGGCATTTATATTGGTAGGTGGACCGTTAGGATCTTGACGCGTGGGGCACACTCACGGATTTTAATATTACCCGTGAGTGCTCTCTTGGCCCCACGCGAGCCCTTTAGGGCGAGCGAAAGTGCGCCGTAGTTTCCTTTAGTGGTTCATGAGTCATTATAGTGCTATATAAAGATGATGTGACATCCCAAAGTTGAAAATGTATCCCGCCAAATACCAAGTGGTCCCATCTGGTATAAATTACTCAGATACCCCTGTTGGTACTTTTGAGCAATATCAGCCGCAGAAAGCGGGTGAGTCATCGGAGCACTTCTTTTCGAAAGTTGTTGTTGCTTTGATTGTTATCCTTTTTGCTGTAGGTATCGTATACTTAGCGTATACGTTATTCTTGAAGGATTTGATCCTTCTTTTGAAAGCAAAGAAGCAGAAGACGACAACTGAGATAGGGTTTGGTAATACCCCTCTCAGAAGACCTGGTGAAGGAAACCCTAATGGCGGGCCGGTATAAGGGTTTGGTTTATTCCCGGAAAAGGGGACGTTATGGCAAGACCTATCAGGCTCTTGGCGTGAAATCACAAAGAGAATTGGAGCAGCTAGTTAACCAACCAGGCCGTCCTGTTTCTAACAGGCGTCCTGCTCTACAGGTCGCAGAGTATCTGTGGACGACGAATAAAACAGGAATGACGTTTTCTCCTGGTGGGTCTACTTTCCTCATCACTAATTTCCCTCAAGGGGCGAACGAGAACTGTAGGCACACCAACCGGACAATTACCTACAAGATGGCTGTGAAGACGTGGGTTGCTTTGGATGGCTCGATGTTCTCTAGGGTTTCAAAATTCCCAATCTATTTCTGGTTGGTGTATGATAAAAACCCTGGCGAGAGTAATCCATCGCCTTCCGCTATTTTTGATAGTCTATATCAAGATCAGCCTGGGACTTGGACTGTGACTCGTAATGTATGTCACAGGTTTGTCGTTAAAAAAACCTGGTCATGTATGTTGGAGTCTAATGGAGTTGACCCTAATGCTAAACAAGGGTCTTCTTACTATGGTCCTGGGCCTTGTTATCAGTGGAGGCATGTTACTAAGTTTTTTAAACGTTTAGGGGTTAGCACAGAGTGGAAGAATTCTTCCACTGGTGATGTTGCTGATATTAAGGAAGGAGCACTATACCTTGTATGTGCTCCTGGTGGTGGTGCTACTGTAAGAGTTGGCGGTAGATTCCGCATGTATTTCAAATCAGTTGGCAATCAATAAAAATGTCGTTATTTTGATTTCATATTAATGAGCTTCAGTGTAGAGAAATTCAAATCTTATTAATAAAAACCCGGAATACAAAAACACACGAAAACGAAAAAAAGACACCTTACAATCATTACACACTATATACCCTCCTATGAGGAGAGGCACGTTCAGTGACTCGACGATTCAGGAGCAAAAAATGTTTCCGCCGCATACATAAAATGCGTAATACAATTGGCTTCAAAGTATTCAATCTGAGCGGGAGACATATTCTTCAGCCAGTCTTCATCGTCGTTACATAGTATAATACATGGCACTCCTCCCTTTATTTTCTTCTTTTTTCCATACTTAGGGTTGACAGTAAAATCAGACTGGCAACCTATTAATTGCTTCCAGAGTGGGACGAATTTGAAGGGGATGTCGTCGATGACGTTGTAGGTCGCGTGGTCATCATAGACAGTGAAGTCGATGGTCCCATTCCAGTAATTGTGCCTTCCGAGGCTTCTGGCCCATGTTGTCTTTCCGGTACGACTTGGTCCGCAGATGTAGAGGGAGGGGATCCTGGTTCCAGCCCTTCTAGGTTCCTGGATATGTCGTCCATCCAAACTAAGTCAGAGTGTGCTTCAACAAGTGTGACGTTATGAACTAGACGGTAAGCATCTACACTTACGTGGTATAGATGCTGGTCTCTCCATAACTGCAGATCTTCATGACATTGGAGATCTTCCTCAGTGAATGTGGCCTGGTAGATTTCAGGTTGTGGTGGAAATAGTTTATTTGCAGAGTATTCCAACCACTGTAATTTTGTTGCCCATTCATGAGGAAATTCATCCTTTATCATGTCCAGATATTCCTCTTTAGAAGTCGCAGTCTGGATAATAGTTCGCCATCGCTCATCAGATTTGGAAGGGGAGACTCTGTGTTTCTTGAACTCTCCTTTGGTGATGACGTTTCCGTCTTTGGAGATGTATTCAAGAACTTGTTCAGAGTTTTTAGCTGGTTGGATATTTGGATGGTTTCCTTCAAGATCAAAAAAAGAAGGGTCACGTATATTGCTTCTTTTGTCAAGCTGTATAAGGCAGTGAAGATGGGGAGTACCATCCTGGTGGAGTTCAGTAGCAATAGCGATAAAGAAAATAGCAAAACGTGAAAGTTTATCCCAGAGGAAATCTCTGAGATTTTCTGCACTAGAGCTGCAGCGTGGATAAGTAAGGAAGACATATTTGGTTTGGAGTCTGAAGGATTTGGTTTTCTGGGGGGCTGAAGGCAT

Gene Information

NCBI Accession NP_620724.1
Location 269-577
Gene Name V1
Protein Name movement protein
Coding Region ATGTATCCCGCCAAATACCAAGTGGTCCCATCTGGTATAAATTACTCAGATACCCCTGTTGGTACTTTTGAGCAATATCAGCCGCAGAAAGCGGGTGAGTCATCGGAGCACTTCTTTTCGAAAGTTGTTGTTGCTTTGATTGTTATCCTTTTTGCTGTAGGTATCGTATACTTAGCGTATACGTTATTCTTGAAGGATTTGATCCTTCTTTTGAAAGCAAAGAAGCAGAAGACGACAACTGAGATAGGGTTTGGTAATACCCCTCTCAGAAGACCTGGTGAAGGAAACCCTAATGGCGGGCCGGTATAA
Protein Sequence MYPAKYQVVPSGINYSDTPVGTFEQYQPQKAGESSEHFFSKVVVALIVILFAVGIVYLAYTLFLKDLILLLKAKKQKTTTEIGFGNTPLRRPGEGNPNGGPV

NCBI Accession NP_620725.1
Location 561-1325
Gene Name V2
Protein Name coat protein
Coding Region ATGGCGGGCCGGTATAAGGGTTTGGTTTATTCCCGGAAAAGGGGACGTTATGGCAAGACCTATCAGGCTCTTGGCGTGAAATCACAAAGAGAATTGGAGCAGCTAGTTAACCAACCAGGCCGTCCTGTTTCTAACAGGCGTCCTGCTCTACAGGTCGCAGAGTATCTGTGGACGACGAATAAAACAGGAATGACGTTTTCTCCTGGTGGGTCTACTTTCCTCATCACTAATTTCCCTCAAGGGGCGAACGAGAACTGTAGGCACACCAACCGGACAATTACCTACAAGATGGCTGTGAAGACGTGGGTTGCTTTGGATGGCTCGATGTTCTCTAGGGTTTCAAAATTCCCAATCTATTTCTGGTTGGTGTATGATAAAAACCCTGGCGAGAGTAATCCATCGCCTTCCGCTATTTTTGATAGTCTATATCAAGATCAGCCTGGGACTTGGACTGTGACTCGTAATGTATGTCACAGGTTTGTCGTTAAAAAAACCTGGTCATGTATGTTGGAGTCTAATGGAGTTGACCCTAATGCTAAACAAGGGTCTTCTTACTATGGTCCTGGGCCTTGTTATCAGTGGAGGCATGTTACTAAGTTTTTTAAACGTTTAGGGGTTAGCACAGAGTGGAAGAATTCTTCCACTGGTGATGTTGCTGATATTAAGGAAGGAGCACTATACCTTGTATGTGCTCCTGGTGGTGGTGCTACTGTAAGAGTTGGCGGTAGATTCCGCATGTATTTCAAATCAGTTGGCAATCAATAA
Protein Sequence MAGRYKGLVYSRKRGRYGKTYQALGVKSQRELEQLVNQPGRPVSNRRPALQVAEYLWTTNKTGMTFSPGGSTFLITNFPQGANENCRHTNRTITYKMAVKTWVALDGSMFSRVSKFPIYFWLVYDKNPGESNPSPSAIFDSLYQDQPGTWTVTRNVCHRFVVKKTWSCMLESNGVDPNAKQGSSYYGPGPCYQWRHVTKFFKRLGVSTEWKNSSTGDVADIKEGALYLVCAPGGGATVRVGGRFRMYFKSVGNQ

NCBI Accession NP_620726.1
Location 1481-1894,1981-2580
Gene Name C2
Protein Name polymerase
Coding Region ATGCCTTCAGCCCCCCAGAAAACCAAATCCTTCAGACTCCAAACCAAATATGTCTTCCTTACTTATCCACGCTGCAGCTCTAGTGCAGAAAATCTCAGAGATTTCCTCTGGGATAAACTTTCACGTTTTGCTATTTTCTTTATCGCTATTGCTACTGAACTCCACCAGGATGGTACTCCCCATCTTCACTGCCTTATACAGCTTGACAAAAGAAGCAATATACGTGACCCTTCTTTTTTTGATCTTGAAGGAAACCATCCAAATATCCAACCAGCTAAAAACTCTGAACAAGTTCTTGAATACATCTCCAAAGACGGAAACGTCATCACCAAAGGAGAGTTCAAGAAACACAGAGTCTCCCCTTCCAAATCTGATGAGCGATGGCGAACTATTATCCAGACTGCGACTTCTAAAGAGGAATATCTGGACATGATAAAGGATGAATTTCCTCATGAATGGGCAACAAAATTACAGTGGTTGGAATACTCTGCAAATAAACTATTTCCACCACAACCTGAAATCTACCAGGCCACATTCACTGAGGAAGATCTCCAATGTCATGAAGATCTGCAGTTATGGAGAGACCAGCATCTATACCACGAACCTAGAAGGGCTGGAACCAGGATCCCCTCCCTCTACATCTGCGGACCAAGTCGTACCGGAAAGACAACATGGGCCAGAAGCCTCGGAAGGCACAATTACTGGAATGGGACCATCGACTTCACTGTCTATGATGACCACGCGACCTACAACGTCATCGACGACATCCCCTTCAAATTCGTCCCACTCTGGAAGCAATTAATAGGTTGCCAGTCTGATTTTACTGTCAACCCTAAGTATGGAAAAAAGAAGAAAATAAAGGGAGGAGTGCCATGTATTATACTATGTAACGACGATGAAGACTGGCTGAAGAATATGTCTCCCGCTCAGATTGAATACTTTGAAGCCAATTGTATTACGCATTTTATGTATGCGGCGGAAACATTTTTTGCTCCTGAATCGTCGAGTCACTGA
Protein Sequence MPSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAIFFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISKDGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYSANKLFPPQPEIYQATFTEEDLQCHEDLQLWRDQHLYHEPRRAGTRIPSLYICGPSRTGKTTWARSLGRHNYWNGTIDFTVYDDHATYNVIDDIPFKFVPLWKQLIGCQSDFTVNPKYGKKKKIKGGVPCIILCNDDEDWLKNMSPAQIEYFEANCITHFMYAAETFFAPESSSH

NCBI Accession NP_620727.1
Location 1693-2580
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGCCTTCAGCCCCCCAGAAAACCAAATCCTTCAGACTCCAAACCAAATATGTCTTCCTTACTTATCCACGCTGCAGCTCTAGTGCAGAAAATCTCAGAGATTTCCTCTGGGATAAACTTTCACGTTTTGCTATTTTCTTTATCGCTATTGCTACTGAACTCCACCAGGATGGTACTCCCCATCTTCACTGCCTTATACAGCTTGACAAAAGAAGCAATATACGTGACCCTTCTTTTTTTGATCTTGAAGGAAACCATCCAAATATCCAACCAGCTAAAAACTCTGAACAAGTTCTTGAATACATCTCCAAAGACGGAAACGTCATCACCAAAGGAGAGTTCAAGAAACACAGAGTCTCCCCTTCCAAATCTGATGAGCGATGGCGAACTATTATCCAGACTGCGACTTCTAAAGAGGAATATCTGGACATGATAAAGGATGAATTTCCTCATGAATGGGCAACAAAATTACAGTGGTTGGAATACTCTGCAAATAAACTATTTCCACCACAACCTGAAATCTACCAGGCCACATTCACTGAGGAAGATCTCCAATGTCATGAAGATCTGCAGTTATGGAGAGACCAGCATCTATACCACGTAAGTGTAGATGCTTACCGTCTAGTTCATAACGTCACACTTGTTGAAGCACACTCTGACTTAGTTTGGATGGACGACATATCCAGGAACCTAGAAGGGCTGGAACCAGGATCCCCTCCCTCTACATCTGCGGACCAAGTCGTACCGGAAAGACAACATGGGCCAGAAGCCTCGGAAGGCACAATTACTGGAATGGGACCATCGACTTCACTGTCTATGATGACCACGCGACCTACAACGTCATCGACGACATCCCCTTCAAATTCGTCCCACTCTGGAAGCAATTAA
Protein Sequence MPSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAIFFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISKDGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYSANKLFPPQPEIYQATFTEEDLQCHEDLQLWRDQHLYHVSVDAYRLVHNVTLVEAHSDLVWMDDISRNLEGLEPGSPPSTSADQVVPERQHGPEASEGTITGMGPSTSLSMMTTRPTTSSTTSPSNSSHSGSN

References More References in PubMed

1

Localization of Tobacco Yellow Dwarf Virus Replication Using the In Plant Activation (INPACT) Expression Platform.

Kato M, et al.  Viruses. 2020 Jun 26;12(6):688. doi: 10.3390/v12060688.

PMID: 32604765
2

The begomoviruses Honeysuckle yellow vein mosaic virus and Tobacco leaf curl Japan virus with DNAbeta satellites cause yellow dwarf disease of tomato.

Ogawa T, et al.  Virus Res. 2008 Nov;137(2):235-44. doi: 10.1016/j.virusres.2008.07.021. Epub 2008 Sep 13.

PMID: 18722488
3

Localization of Barley yellow dwarf virus Movement Protein Modulating Programmed Cell Death in Nicotiana benthamiana.

Ju J, et al.  Plant Pathol J. 2017 Feb;33(1):53-65. doi: 10.5423/PPJ.FT.10.2016.0233. Epub 2017 Feb 1.

PMID: 28167888
4

Rescue of an Infectious cDNA Clone of Barley Yellow Dwarf Virus-GAV.

Hao X, et al.  Phytopathology. 2021 Dec;111(12):2383-2391. doi: 10.1094/PHYTO-11-20-0522-R. Epub 2021 Dec 6.

PMID: 33961494
5

Viral Vectors for Plant Genome Engineering.

Zaidi SS, et al.  Front Plant Sci. 2017 Apr 11;8:539. doi: 10.3389/fpls.2017.00539. eCollection 2017.

PMID: 28443125
6

Comparison of Tomato Yellow Leaf Curl Virus-Induced Gene Expression Pattern in Tomato and Tobacco Plants.

Zhang C, et al.  Plant Pathol J. 2025 Jun;41(3):293-310. doi: 10.5423/PPJ.OA.12.2024.0191. Epub 2025 Apr 3.

PMID: 40176574
7

The 3' untranslated region of tobacco necrosis virus RNA contains a barley yellow dwarf virus-like cap-independent translation element.

Shen R, et al.  J Virol. 2004 May;78(9):4655-64. doi: 10.1128/jvi.78.9.4655-4664.2004.

PMID: 15078948
8

Next-Generation Sequencing and Genome Editing in Plant Virology.

Hadidi A, et al.  Front Microbiol. 2016 Aug 26;7:1325. doi: 10.3389/fmicb.2016.01325. eCollection 2016.

PMID: 27617007
9

The nucleotide sequence of the infectious cloned DNA component of tobacco yellow dwarf virus reveals features of geminiviruses infecting monocotyledonous plants.

Morris BA, et al.  Virology. 1992 Apr;187(2):633-42. doi: 10.1016/0042-6822(92)90466-3.

PMID: 1546458
10

PURIFICATION OF BARLEY YELLOW DWARF VIRUS.

ROCHOW WF, et al.  Virology. 1964 Nov;24:310-22. doi: 10.1016/0042-6822(64)90169-2.

PMID: 14227033