Tobacco yellow dwarf virus


Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000840085.1
Release date 2015/2/12
Submitter Morris,B.A., Richardson,K.A., Haley,A., Zhan,X., Thomas,J.E.
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_003822
ATTAAGGCTCAAGTACCGTACGATGAAACTCTATTCTTAACTAGTGAGTGAGCCAGTGAGCCAGGTTTATGTGGCATTTATATTGGTAGGTGGACCGTTAGGATCTTGACGCGTGGGGCACACTCACGGATTTTAATATTACCCGTGAGTGCTCTCTTGGCCCCACGCGAGCCCTTTAGGGCGAGCGAAAGTGCGCCGTAGTTTCCTTTAGTGGTTCATGAGTCATTATAGTGCTATATAAAGATGATGTGACATCCCAAAGTTGAAAATGTATCCCGCCAAATACCAAGTGGTCCCATCTGGTATAAATTACTCAGATACCCCTGTTGGTACTTTTGAGCAATATCAGCCGCAGAAAGCGGGTGAGTCATCGGAGCACTTCTTTTCGAAAGTTGTTGTTGCTTTGATTGTTATCCTTTTTGCTGTAGGTATCGTATACTTAGCGTATACGTTATTCTTGAAGGATTTGATCCTTCTTTTGAAAGCAAAGAAGCAGAAGACGACAACTGAGATAGGGTTTGGTAATACCCCTCTCAGAAGACCTGGTGAAGGAAACCCTAATGGCGGGCCGGTATAAGGGTTTGGTTTATTCCCGGAAAAGGGGACGTTATGGCAAGACCTATCAGGCTCTTGGCGTGAAATCACAAAGAGAATTGGAGCAGCTAGTTAACCAACCAGGCCGTCCTGTTTCTAACAGGCGTCCTGCTCTACAGGTCGCAGAGTATCTGTGGACGACGAATAAAACAGGAATGACGTTTTCTCCTGGTGGGTCTACTTTCCTCATCACTAATTTCCCTCAAGGGGCGAACGAGAACTGTAGGCACACCAACCGGACAATTACCTACAAGATGGCTGTGAAGACGTGGGTTGCTTTGGATGGCTCGATGTTCTCTAGGGTTTCAAAATTCCCAATCTATTTCTGGTTGGTGTATGATAAAAACCCTGGCGAGAGTAATCCATCGCCTTCCGCTATTTTTGATAGTCTATATCAAGATCAGCCTGGGACTTGGACTGTGACTCGTAATGTATGTCACAGGTTTGTCGTTAAAAAAACCTGGTCATGTATGTTGGAGTCTAATGGAGTTGACCCTAATGCTAAACAAGGGTCTTCTTACTATGGTCCTGGGCCTTGTTATCAGTGGAGGCATGTTACTAAGTTTTTTAAACGTTTAGGGGTTAGCACAGAGTGGAAGAATTCTTCCACTGGTGATGTTGCTGATATTAAGGAAGGAGCACTATACCTTGTATGTGCTCCTGGTGGTGGTGCTACTGTAAGAGTTGGCGGTAGATTCCGCATGTATTTCAAATCAGTTGGCAATCAATAAAAATGTCGTTATTTTGATTTCATATTAATGAGCTTCAGTGTAGAGAAATTCAAATCTTATTAATAAAAACCCGGAATACAAAAACACACGAAAACGAAAAAAAGACACCTTACAATCATTACACACTATATACCCTCCTATGAGGAGAGGCACGTTCAGTGACTCGACGATTCAGGAGCAAAAAATGTTTCCGCCGCATACATAAAATGCGTAATACAATTGGCTTCAAAGTATTCAATCTGAGCGGGAGACATATTCTTCAGCCAGTCTTCATCGTCGTTACATAGTATAATACATGGCACTCCTCCCTTTATTTTCTTCTTTTTTCCATACTTAGGGTTGACAGTAAAATCAGACTGGCAACCTATTAATTGCTTCCAGAGTGGGACGAATTTGAAGGGGATGTCGTCGATGACGTTGTAGGTCGCGTGGTCATCATAGACAGTGAAGTCGATGGTCCCATTCCAGTAATTGTGCCTTCCGAGGCTTCTGGCCCATGTTGTCTTTCCGGTACGACTTGGTCCGCAGATGTAGAGGGAGGGGATCCTGGTTCCAGCCCTTCTAGGTTCCTGGATATGTCGTCCATCCAAACTAAGTCAGAGTGTGCTTCAACAAGTGTGACGTTATGAACTAGACGGTAAGCATCTACACTTACGTGGTATAGATGCTGGTCTCTCCATAACTGCAGATCTTCATGACATTGGAGATCTTCCTCAGTGAATGTGGCCTGGTAGATTTCAGGTTGTGGTGGAAATAGTTTATTTGCAGAGTATTCCAACCACTGTAATTTTGTTGCCCATTCATGAGGAAATTCATCCTTTATCATGTCCAGATATTCCTCTTTAGAAGTCGCAGTCTGGATAATAGTTCGCCATCGCTCATCAGATTTGGAAGGGGAGACTCTGTGTTTCTTGAACTCTCCTTTGGTGATGACGTTTCCGTCTTTGGAGATGTATTCAAGAACTTGTTCAGAGTTTTTAGCTGGTTGGATATTTGGATGGTTTCCTTCAAGATCAAAAAAAGAAGGGTCACGTATATTGCTTCTTTTGTCAAGCTGTATAAGGCAGTGAAGATGGGGAGTACCATCCTGGTGGAGTTCAGTAGCAATAGCGATAAAGAAAATAGCAAAACGTGAAAGTTTATCCCAGAGGAAATCTCTGAGATTTTCTGCACTAGAGCTGCAGCGTGGATAAGTAAGGAAGACATATTTGGTTTGGAGTCTGAAGGATTTGGTTTTCTGGGGGGCTGAAGGCAT

Gene Information

NCBI Accession NP_620724.1
Location 269-577
Gene Name V1
Protein Name movement protein
Coding Region ATGTATCCCGCCAAATACCAAGTGGTCCCATCTGGTATAAATTACTCAGATACCCCTGTTGGTACTTTTGAGCAATATCAGCCGCAGAAAGCGGGTGAGTCATCGGAGCACTTCTTTTCGAAAGTTGTTGTTGCTTTGATTGTTATCCTTTTTGCTGTAGGTATCGTATACTTAGCGTATACGTTATTCTTGAAGGATTTGATCCTTCTTTTGAAAGCAAAGAAGCAGAAGACGACAACTGAGATAGGGTTTGGTAATACCCCTCTCAGAAGACCTGGTGAAGGAAACCCTAATGGCGGGCCGGTATAA
Protein Sequence MYPAKYQVVPSGINYSDTPVGTFEQYQPQKAGESSEHFFSKVVVALIVILFAVGIVYLAYTLFLKDLILLLKAKKQKTTTEIGFGNTPLRRPGEGNPNGGPV

NCBI Accession NP_620725.1
Location 561-1325
Gene Name V2
Protein Name coat protein
Coding Region ATGGCGGGCCGGTATAAGGGTTTGGTTTATTCCCGGAAAAGGGGACGTTATGGCAAGACCTATCAGGCTCTTGGCGTGAAATCACAAAGAGAATTGGAGCAGCTAGTTAACCAACCAGGCCGTCCTGTTTCTAACAGGCGTCCTGCTCTACAGGTCGCAGAGTATCTGTGGACGACGAATAAAACAGGAATGACGTTTTCTCCTGGTGGGTCTACTTTCCTCATCACTAATTTCCCTCAAGGGGCGAACGAGAACTGTAGGCACACCAACCGGACAATTACCTACAAGATGGCTGTGAAGACGTGGGTTGCTTTGGATGGCTCGATGTTCTCTAGGGTTTCAAAATTCCCAATCTATTTCTGGTTGGTGTATGATAAAAACCCTGGCGAGAGTAATCCATCGCCTTCCGCTATTTTTGATAGTCTATATCAAGATCAGCCTGGGACTTGGACTGTGACTCGTAATGTATGTCACAGGTTTGTCGTTAAAAAAACCTGGTCATGTATGTTGGAGTCTAATGGAGTTGACCCTAATGCTAAACAAGGGTCTTCTTACTATGGTCCTGGGCCTTGTTATCAGTGGAGGCATGTTACTAAGTTTTTTAAACGTTTAGGGGTTAGCACAGAGTGGAAGAATTCTTCCACTGGTGATGTTGCTGATATTAAGGAAGGAGCACTATACCTTGTATGTGCTCCTGGTGGTGGTGCTACTGTAAGAGTTGGCGGTAGATTCCGCATGTATTTCAAATCAGTTGGCAATCAATAA
Protein Sequence MAGRYKGLVYSRKRGRYGKTYQALGVKSQRELEQLVNQPGRPVSNRRPALQVAEYLWTTNKTGMTFSPGGSTFLITNFPQGANENCRHTNRTITYKMAVKTWVALDGSMFSRVSKFPIYFWLVYDKNPGESNPSPSAIFDSLYQDQPGTWTVTRNVCHRFVVKKTWSCMLESNGVDPNAKQGSSYYGPGPCYQWRHVTKFFKRLGVSTEWKNSSTGDVADIKEGALYLVCAPGGGATVRVGGRFRMYFKSVGNQ

NCBI Accession NP_620726.1
Location 1481-1894,1981-2580
Gene Name C2
Protein Name polymerase
Coding Region ATGCCTTCAGCCCCCCAGAAAACCAAATCCTTCAGACTCCAAACCAAATATGTCTTCCTTACTTATCCACGCTGCAGCTCTAGTGCAGAAAATCTCAGAGATTTCCTCTGGGATAAACTTTCACGTTTTGCTATTTTCTTTATCGCTATTGCTACTGAACTCCACCAGGATGGTACTCCCCATCTTCACTGCCTTATACAGCTTGACAAAAGAAGCAATATACGTGACCCTTCTTTTTTTGATCTTGAAGGAAACCATCCAAATATCCAACCAGCTAAAAACTCTGAACAAGTTCTTGAATACATCTCCAAAGACGGAAACGTCATCACCAAAGGAGAGTTCAAGAAACACAGAGTCTCCCCTTCCAAATCTGATGAGCGATGGCGAACTATTATCCAGACTGCGACTTCTAAAGAGGAATATCTGGACATGATAAAGGATGAATTTCCTCATGAATGGGCAACAAAATTACAGTGGTTGGAATACTCTGCAAATAAACTATTTCCACCACAACCTGAAATCTACCAGGCCACATTCACTGAGGAAGATCTCCAATGTCATGAAGATCTGCAGTTATGGAGAGACCAGCATCTATACCACGAACCTAGAAGGGCTGGAACCAGGATCCCCTCCCTCTACATCTGCGGACCAAGTCGTACCGGAAAGACAACATGGGCCAGAAGCCTCGGAAGGCACAATTACTGGAATGGGACCATCGACTTCACTGTCTATGATGACCACGCGACCTACAACGTCATCGACGACATCCCCTTCAAATTCGTCCCACTCTGGAAGCAATTAATAGGTTGCCAGTCTGATTTTACTGTCAACCCTAAGTATGGAAAAAAGAAGAAAATAAAGGGAGGAGTGCCATGTATTATACTATGTAACGACGATGAAGACTGGCTGAAGAATATGTCTCCCGCTCAGATTGAATACTTTGAAGCCAATTGTATTACGCATTTTATGTATGCGGCGGAAACATTTTTTGCTCCTGAATCGTCGAGTCACTGA
Protein Sequence MPSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAIFFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISKDGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYSANKLFPPQPEIYQATFTEEDLQCHEDLQLWRDQHLYHEPRRAGTRIPSLYICGPSRTGKTTWARSLGRHNYWNGTIDFTVYDDHATYNVIDDIPFKFVPLWKQLIGCQSDFTVNPKYGKKKKIKGGVPCIILCNDDEDWLKNMSPAQIEYFEANCITHFMYAAETFFAPESSSH

NCBI Accession NP_620727.1
Location 1693-2580
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGCCTTCAGCCCCCCAGAAAACCAAATCCTTCAGACTCCAAACCAAATATGTCTTCCTTACTTATCCACGCTGCAGCTCTAGTGCAGAAAATCTCAGAGATTTCCTCTGGGATAAACTTTCACGTTTTGCTATTTTCTTTATCGCTATTGCTACTGAACTCCACCAGGATGGTACTCCCCATCTTCACTGCCTTATACAGCTTGACAAAAGAAGCAATATACGTGACCCTTCTTTTTTTGATCTTGAAGGAAACCATCCAAATATCCAACCAGCTAAAAACTCTGAACAAGTTCTTGAATACATCTCCAAAGACGGAAACGTCATCACCAAAGGAGAGTTCAAGAAACACAGAGTCTCCCCTTCCAAATCTGATGAGCGATGGCGAACTATTATCCAGACTGCGACTTCTAAAGAGGAATATCTGGACATGATAAAGGATGAATTTCCTCATGAATGGGCAACAAAATTACAGTGGTTGGAATACTCTGCAAATAAACTATTTCCACCACAACCTGAAATCTACCAGGCCACATTCACTGAGGAAGATCTCCAATGTCATGAAGATCTGCAGTTATGGAGAGACCAGCATCTATACCACGTAAGTGTAGATGCTTACCGTCTAGTTCATAACGTCACACTTGTTGAAGCACACTCTGACTTAGTTTGGATGGACGACATATCCAGGAACCTAGAAGGGCTGGAACCAGGATCCCCTCCCTCTACATCTGCGGACCAAGTCGTACCGGAAAGACAACATGGGCCAGAAGCCTCGGAAGGCACAATTACTGGAATGGGACCATCGACTTCACTGTCTATGATGACCACGCGACCTACAACGTCATCGACGACATCCCCTTCAAATTCGTCCCACTCTGGAAGCAATTAA
Protein Sequence MPSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAIFFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISKDGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYSANKLFPPQPEIYQATFTEEDLQCHEDLQLWRDQHLYHVSVDAYRLVHNVTLVEAHSDLVWMDDISRNLEGLEPGSPPSTSADQVVPERQHGPEASEGTITGMGPSTSLSMMTTRPTTSSTTSPSNSSHSGSN

References More References in PubMed

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Localization of Tobacco Yellow Dwarf Virus Replication Using the In Plant Activation (INPACT) Expression Platform.

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The begomoviruses Honeysuckle yellow vein mosaic virus and Tobacco leaf curl Japan virus with DNAbeta satellites cause yellow dwarf disease of tomato.

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The 3' untranslated region of tobacco necrosis virus RNA contains a barley yellow dwarf virus-like cap-independent translation element.

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9

PURIFICATION OF BARLEY YELLOW DWARF VIRUS.

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10

The nucleotide sequence of the infectious cloned DNA component of tobacco yellow dwarf virus reveals features of geminiviruses infecting monocotyledonous plants.

Morris BA, et al.  Virology. 1992 Apr;187(2):633-42. doi: 10.1016/0042-6822(92)90466-3.

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