Tobacco yellow dwarf virus

Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000840085.1
Release date 2015/2/12
Submitter Morris,B.A., Richardson,K.A., Haley,A., Zhan,X., Thomas,J.E.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_003822
ATTAAGGCTCAAGTACCGTACGATGAAACTCTATTCTTAACTAGTGAGTGAGCCAGTGAGCCAGGTTTATGTGGCATTTATATTGGTAGGTGGACCGTTAGGATCTTGACGCGTGGGGCACACTCACGGATTTTAATATTACCCGTGAGTGCTCTCTTGGCCCCACGCGAGCCCTTTAGGGCGAGCGAAAGTGCGCCGTAGTTTCCTTTAGTGGTTCATGAGTCATTATAGTGCTATATAAAGATGATGTGACATCCCAAAGTTGAAAATGTATCCCGCCAAATACCAAGTGGTCCCATCTGGTATAAATTACTCAGATACCCCTGTTGGTACTTTTGAGCAATATCAGCCGCAGAAAGCGGGTGAGTCATCGGAGCACTTCTTTTCGAAAGTTGTTGTTGCTTTGATTGTTATCCTTTTTGCTGTAGGTATCGTATACTTAGCGTATACGTTATTCTTGAAGGATTTGATCCTTCTTTTGAAAGCAAAGAAGCAGAAGACGACAACTGAGATAGGGTTTGGTAATACCCCTCTCAGAAGACCTGGTGAAGGAAACCCTAATGGCGGGCCGGTATAAGGGTTTGGTTTATTCCCGGAAAAGGGGACGTTATGGCAAGACCTATCAGGCTCTTGGCGTGAAATCACAAAGAGAATTGGAGCAGCTAGTTAACCAACCAGGCCGTCCTGTTTCTAACAGGCGTCCTGCTCTACAGGTCGCAGAGTATCTGTGGACGACGAATAAAACAGGAATGACGTTTTCTCCTGGTGGGTCTACTTTCCTCATCACTAATTTCCCTCAAGGGGCGAACGAGAACTGTAGGCACACCAACCGGACAATTACCTACAAGATGGCTGTGAAGACGTGGGTTGCTTTGGATGGCTCGATGTTCTCTAGGGTTTCAAAATTCCCAATCTATTTCTGGTTGGTGTATGATAAAAACCCTGGCGAGAGTAATCCATCGCCTTCCGCTATTTTTGATAGTCTATATCAAGATCAGCCTGGGACTTGGACTGTGACTCGTAATGTATGTCACAGGTTTGTCGTTAAAAAAACCTGGTCATGTATGTTGGAGTCTAATGGAGTTGACCCTAATGCTAAACAAGGGTCTTCTTACTATGGTCCTGGGCCTTGTTATCAGTGGAGGCATGTTACTAAGTTTTTTAAACGTTTAGGGGTTAGCACAGAGTGGAAGAATTCTTCCACTGGTGATGTTGCTGATATTAAGGAAGGAGCACTATACCTTGTATGTGCTCCTGGTGGTGGTGCTACTGTAAGAGTTGGCGGTAGATTCCGCATGTATTTCAAATCAGTTGGCAATCAATAAAAATGTCGTTATTTTGATTTCATATTAATGAGCTTCAGTGTAGAGAAATTCAAATCTTATTAATAAAAACCCGGAATACAAAAACACACGAAAACGAAAAAAAGACACCTTACAATCATTACACACTATATACCCTCCTATGAGGAGAGGCACGTTCAGTGACTCGACGATTCAGGAGCAAAAAATGTTTCCGCCGCATACATAAAATGCGTAATACAATTGGCTTCAAAGTATTCAATCTGAGCGGGAGACATATTCTTCAGCCAGTCTTCATCGTCGTTACATAGTATAATACATGGCACTCCTCCCTTTATTTTCTTCTTTTTTCCATACTTAGGGTTGACAGTAAAATCAGACTGGCAACCTATTAATTGCTTCCAGAGTGGGACGAATTTGAAGGGGATGTCGTCGATGACGTTGTAGGTCGCGTGGTCATCATAGACAGTGAAGTCGATGGTCCCATTCCAGTAATTGTGCCTTCCGAGGCTTCTGGCCCATGTTGTCTTTCCGGTACGACTTGGTCCGCAGATGTAGAGGGAGGGGATCCTGGTTCCAGCCCTTCTAGGTTCCTGGATATGTCGTCCATCCAAACTAAGTCAGAGTGTGCTTCAACAAGTGTGACGTTATGAACTAGACGGTAAGCATCTACACTTACGTGGTATAGATGCTGGTCTCTCCATAACTGCAGATCTTCATGACATTGGAGATCTTCCTCAGTGAATGTGGCCTGGTAGATTTCAGGTTGTGGTGGAAATAGTTTATTTGCAGAGTATTCCAACCACTGTAATTTTGTTGCCCATTCATGAGGAAATTCATCCTTTATCATGTCCAGATATTCCTCTTTAGAAGTCGCAGTCTGGATAATAGTTCGCCATCGCTCATCAGATTTGGAAGGGGAGACTCTGTGTTTCTTGAACTCTCCTTTGGTGATGACGTTTCCGTCTTTGGAGATGTATTCAAGAACTTGTTCAGAGTTTTTAGCTGGTTGGATATTTGGATGGTTTCCTTCAAGATCAAAAAAAGAAGGGTCACGTATATTGCTTCTTTTGTCAAGCTGTATAAGGCAGTGAAGATGGGGAGTACCATCCTGGTGGAGTTCAGTAGCAATAGCGATAAAGAAAATAGCAAAACGTGAAAGTTTATCCCAGAGGAAATCTCTGAGATTTTCTGCACTAGAGCTGCAGCGTGGATAAGTAAGGAAGACATATTTGGTTTGGAGTCTGAAGGATTTGGTTTTCTGGGGGGCTGAAGGCAT

Gene Information

NCBI Accession NP_620724.1
Location 269-577
Gene Name V1
Protein Name movement protein
Coding Region ATGTATCCCGCCAAATACCAAGTGGTCCCATCTGGTATAAATTACTCAGATACCCCTGTTGGTACTTTTGAGCAATATCAGCCGCAGAAAGCGGGTGAGTCATCGGAGCACTTCTTTTCGAAAGTTGTTGTTGCTTTGATTGTTATCCTTTTTGCTGTAGGTATCGTATACTTAGCGTATACGTTATTCTTGAAGGATTTGATCCTTCTTTTGAAAGCAAAGAAGCAGAAGACGACAACTGAGATAGGGTTTGGTAATACCCCTCTCAGAAGACCTGGTGAAGGAAACCCTAATGGCGGGCCGGTATAA
Protein Sequence MYPAKYQVVPSGINYSDTPVGTFEQYQPQKAGESSEHFFSKVVVALIVILFAVGIVYLAYTLFLKDLILLLKAKKQKTTTEIGFGNTPLRRPGEGNPNGGPV

NCBI Accession NP_620725.1
Location 561-1325
Gene Name V2
Protein Name coat protein
Coding Region ATGGCGGGCCGGTATAAGGGTTTGGTTTATTCCCGGAAAAGGGGACGTTATGGCAAGACCTATCAGGCTCTTGGCGTGAAATCACAAAGAGAATTGGAGCAGCTAGTTAACCAACCAGGCCGTCCTGTTTCTAACAGGCGTCCTGCTCTACAGGTCGCAGAGTATCTGTGGACGACGAATAAAACAGGAATGACGTTTTCTCCTGGTGGGTCTACTTTCCTCATCACTAATTTCCCTCAAGGGGCGAACGAGAACTGTAGGCACACCAACCGGACAATTACCTACAAGATGGCTGTGAAGACGTGGGTTGCTTTGGATGGCTCGATGTTCTCTAGGGTTTCAAAATTCCCAATCTATTTCTGGTTGGTGTATGATAAAAACCCTGGCGAGAGTAATCCATCGCCTTCCGCTATTTTTGATAGTCTATATCAAGATCAGCCTGGGACTTGGACTGTGACTCGTAATGTATGTCACAGGTTTGTCGTTAAAAAAACCTGGTCATGTATGTTGGAGTCTAATGGAGTTGACCCTAATGCTAAACAAGGGTCTTCTTACTATGGTCCTGGGCCTTGTTATCAGTGGAGGCATGTTACTAAGTTTTTTAAACGTTTAGGGGTTAGCACAGAGTGGAAGAATTCTTCCACTGGTGATGTTGCTGATATTAAGGAAGGAGCACTATACCTTGTATGTGCTCCTGGTGGTGGTGCTACTGTAAGAGTTGGCGGTAGATTCCGCATGTATTTCAAATCAGTTGGCAATCAATAA
Protein Sequence MAGRYKGLVYSRKRGRYGKTYQALGVKSQRELEQLVNQPGRPVSNRRPALQVAEYLWTTNKTGMTFSPGGSTFLITNFPQGANENCRHTNRTITYKMAVKTWVALDGSMFSRVSKFPIYFWLVYDKNPGESNPSPSAIFDSLYQDQPGTWTVTRNVCHRFVVKKTWSCMLESNGVDPNAKQGSSYYGPGPCYQWRHVTKFFKRLGVSTEWKNSSTGDVADIKEGALYLVCAPGGGATVRVGGRFRMYFKSVGNQ

NCBI Accession NP_620726.1
Location 1481-1894,1981-2580
Gene Name C2
Protein Name polymerase
Coding Region ATGCCTTCAGCCCCCCAGAAAACCAAATCCTTCAGACTCCAAACCAAATATGTCTTCCTTACTTATCCACGCTGCAGCTCTAGTGCAGAAAATCTCAGAGATTTCCTCTGGGATAAACTTTCACGTTTTGCTATTTTCTTTATCGCTATTGCTACTGAACTCCACCAGGATGGTACTCCCCATCTTCACTGCCTTATACAGCTTGACAAAAGAAGCAATATACGTGACCCTTCTTTTTTTGATCTTGAAGGAAACCATCCAAATATCCAACCAGCTAAAAACTCTGAACAAGTTCTTGAATACATCTCCAAAGACGGAAACGTCATCACCAAAGGAGAGTTCAAGAAACACAGAGTCTCCCCTTCCAAATCTGATGAGCGATGGCGAACTATTATCCAGACTGCGACTTCTAAAGAGGAATATCTGGACATGATAAAGGATGAATTTCCTCATGAATGGGCAACAAAATTACAGTGGTTGGAATACTCTGCAAATAAACTATTTCCACCACAACCTGAAATCTACCAGGCCACATTCACTGAGGAAGATCTCCAATGTCATGAAGATCTGCAGTTATGGAGAGACCAGCATCTATACCACGAACCTAGAAGGGCTGGAACCAGGATCCCCTCCCTCTACATCTGCGGACCAAGTCGTACCGGAAAGACAACATGGGCCAGAAGCCTCGGAAGGCACAATTACTGGAATGGGACCATCGACTTCACTGTCTATGATGACCACGCGACCTACAACGTCATCGACGACATCCCCTTCAAATTCGTCCCACTCTGGAAGCAATTAATAGGTTGCCAGTCTGATTTTACTGTCAACCCTAAGTATGGAAAAAAGAAGAAAATAAAGGGAGGAGTGCCATGTATTATACTATGTAACGACGATGAAGACTGGCTGAAGAATATGTCTCCCGCTCAGATTGAATACTTTGAAGCCAATTGTATTACGCATTTTATGTATGCGGCGGAAACATTTTTTGCTCCTGAATCGTCGAGTCACTGA
Protein Sequence MPSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAIFFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISKDGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYSANKLFPPQPEIYQATFTEEDLQCHEDLQLWRDQHLYHEPRRAGTRIPSLYICGPSRTGKTTWARSLGRHNYWNGTIDFTVYDDHATYNVIDDIPFKFVPLWKQLIGCQSDFTVNPKYGKKKKIKGGVPCIILCNDDEDWLKNMSPAQIEYFEANCITHFMYAAETFFAPESSSH

NCBI Accession NP_620727.1
Location 1693-2580
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGCCTTCAGCCCCCCAGAAAACCAAATCCTTCAGACTCCAAACCAAATATGTCTTCCTTACTTATCCACGCTGCAGCTCTAGTGCAGAAAATCTCAGAGATTTCCTCTGGGATAAACTTTCACGTTTTGCTATTTTCTTTATCGCTATTGCTACTGAACTCCACCAGGATGGTACTCCCCATCTTCACTGCCTTATACAGCTTGACAAAAGAAGCAATATACGTGACCCTTCTTTTTTTGATCTTGAAGGAAACCATCCAAATATCCAACCAGCTAAAAACTCTGAACAAGTTCTTGAATACATCTCCAAAGACGGAAACGTCATCACCAAAGGAGAGTTCAAGAAACACAGAGTCTCCCCTTCCAAATCTGATGAGCGATGGCGAACTATTATCCAGACTGCGACTTCTAAAGAGGAATATCTGGACATGATAAAGGATGAATTTCCTCATGAATGGGCAACAAAATTACAGTGGTTGGAATACTCTGCAAATAAACTATTTCCACCACAACCTGAAATCTACCAGGCCACATTCACTGAGGAAGATCTCCAATGTCATGAAGATCTGCAGTTATGGAGAGACCAGCATCTATACCACGTAAGTGTAGATGCTTACCGTCTAGTTCATAACGTCACACTTGTTGAAGCACACTCTGACTTAGTTTGGATGGACGACATATCCAGGAACCTAGAAGGGCTGGAACCAGGATCCCCTCCCTCTACATCTGCGGACCAAGTCGTACCGGAAAGACAACATGGGCCAGAAGCCTCGGAAGGCACAATTACTGGAATGGGACCATCGACTTCACTGTCTATGATGACCACGCGACCTACAACGTCATCGACGACATCCCCTTCAAATTCGTCCCACTCTGGAAGCAATTAA
Protein Sequence MPSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAIFFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYISKDGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWLEYSANKLFPPQPEIYQATFTEEDLQCHEDLQLWRDQHLYHVSVDAYRLVHNVTLVEAHSDLVWMDDISRNLEGLEPGSPPSTSADQVVPERQHGPEASEGTITGMGPSTSLSMMTTRPTTSSTTSPSNSSHSGSN

References More References in PubMed

1

Localization of Tobacco Yellow Dwarf Virus Replication Using the In Plant Activation (INPACT) Expression Platform.

Kato M, et al.  Viruses. 2020 Jun 26;12(6):688. doi: 10.3390/v12060688.

PMID: 32604765
2

Localization of Barley yellow dwarf virus Movement Protein Modulating Programmed Cell Death in Nicotiana benthamiana.

Ju J, et al.  Plant Pathol J. 2017 Feb;33(1):53-65. doi: 10.5423/PPJ.FT.10.2016.0233. Epub 2017 Feb 1.

PMID: 28167888
3

Comparison of Tomato Yellow Leaf Curl Virus-Induced Gene Expression Pattern in Tomato and Tobacco Plants.

Zhang C, et al.  Plant Pathol J. 2025 Jun;41(3):293-310. doi: 10.5423/PPJ.OA.12.2024.0191. Epub 2025 Apr 3.

PMID: 40176574
4

Rescue of an Infectious cDNA Clone of Barley Yellow Dwarf Virus-GAV.

Hao X, et al.  Phytopathology. 2021 Dec;111(12):2383-2391. doi: 10.1094/PHYTO-11-20-0522-R. Epub 2021 Dec 6.

PMID: 33961494
5

PURIFICATION OF BARLEY YELLOW DWARF VIRUS.

ROCHOW WF, et al.  Virology. 1964 Nov;24:310-22. doi: 10.1016/0042-6822(64)90169-2.

PMID: 14227033
6

Viral Vectors for Plant Genome Engineering.

Zaidi SS, et al.  Front Plant Sci. 2017 Apr 11;8:539. doi: 10.3389/fpls.2017.00539. eCollection 2017.

PMID: 28443125
7

The begomoviruses Honeysuckle yellow vein mosaic virus and Tobacco leaf curl Japan virus with DNAbeta satellites cause yellow dwarf disease of tomato.

Ogawa T, et al.  Virus Res. 2008 Nov;137(2):235-44. doi: 10.1016/j.virusres.2008.07.021. Epub 2008 Sep 13.

PMID: 18722488
8

Characterization of an RNA silencing suppressor encoded by maize yellow dwarf virus-RMV2.

Wang F, et al.  Virus Genes. 2018 Aug;54(4):570-577. doi: 10.1007/s11262-018-1565-0. Epub 2018 May 11.

PMID: 29752617
9

Bean Yellow Dwarf Virus replicons for high-level transgene expression in transgenic plants and cell cultures.

Zhang X, et al.  Biotechnol Bioeng. 2006 Feb 5;93(2):271-9. doi: 10.1002/bit.20695.

PMID: 16187337
10

Full genome sequence analysis and putative host-shifting of Milk vetch dwarf virus infecting tobacco (Nicotiana tabacum) in China.

Kamran A, et al.  Virol J. 2019 Mar 27;16(1):38. doi: 10.1186/s12985-019-1129-5.

PMID: 30917832