Switchgrass mosaic-associated virus
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_000928935.1 |
| Isolate |
USA: Urbana, IL |
| Release date |
2015/2/22 |
| Submitter |
Agindotan,B.O., Domier,L.L., Bradley,C.A. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
TAATATTACCGCATTGCCCTCGCGTCCCGAGGCGACACTTGGCCCTGTAAGTGGCGCCGAGGGAAATTTGGCGGGAAATTTCGGTTGCTTTTCGAAGACGGTGCGCGGACCCATCAGCGCACTATAAAAAGACTCTCCCCCGGATACACTCCATCTATGGAGAAAGGACCTGGCCCACAACTTTATCCTGCGACAATAACAGCCGCAAACCCGGCCGGAGTGGGGAACGACGGAGCTTGGAGATCACTGGTACTCATCTTTACCATCGTGAGCATAACTTTAGCAGCAATAGCTGGATCTTACTATCTTTGTGTGAAGGATTGCCTCCTGACCTGGAGAGCGCGGCGATCCAGGACAGTGACGGAGCTAGGGTTTGGGACCACGCCGCAGCGTGCTGGAGGTAATTCGGCGGCGTCAGGTAGCGGGGGGCCCAGTAACCCTCCCTTTCCTATCTAATTCCGCCTTCGTCGTCGGAGGCCCTACTATCACTATGCCGTCCAGATCTAGGTATACATACAAGAGGAAGAGGCCTGCGAAGCGGGCCCGGGTTGAGCCGTGGCCGCCGGAACTCACGAGGCTTGGGTACACGCCTCGGGATACTGTTCTGCGGGGGACCCGCAGAAGAGATGGAAGACCCAGCTTGCAGGTCATCAACTACACTTGGAAGAACGATGGAAGTGCGGTGACGATCGGAAACGGCGGAGGCGTTTATCTTCTAACGGAGTTTCCCCGGGGAGATGCTGAGGATCAGCGTCACACCGGGGAAACTCTCACCTACAAGGTGAGCTTGAATCTGCAGTTTGCCGTTCAGGAGGATTACAGGAAATACTGTAATCGGGCCCAGAATATGGTATTTCTGGTGTACGATGCGCAGCCAACCGGGACCAATCCCAAAATTACTGATATATTCCATATTGCGGCCTCGCAATTCTTCCCAATTCCGGCCACCTGGATGGTTTCCCGGGAAAATTCGCATCGATTCGTCATCAAGAGGAAGTGGATGTTCATCACCGAAGTGAACGGGTCGGGGACAGCGAAAGACTACACTAACGCGCCGTGCTATCCGGCGCATTTCAGTTTAATTTTCAAGAGGTTCGTTCAGCGTTTGGGCGTTCGAACCGAATGGAAAAATTCAACTGAGGGTGGAATTGGAGCCATCTCCAAGGGTGCGATGTATTTAATTATAGCGCCGGGAAATGGCATGCCTCTCGAGGCTAGAGGGAATATCCGTCTGTATTTCAAATCAATTGGAAATCAATAAAGATGGATGTTTCAAATATATGAACACATTTTTATTTGTTCTGACACTCGTTATGTTCACGAGTCGNTCCGGACCAAAATTCATTTGGGCGGACAGGACAAAGCAGGCGGCTATAGGGCGCGCCTGGGGAAACACATTAAAAAAAATACAGCAATAGAATTACAAATCAGGCGAAGCCTGTTCAGGCACTGCGAAAAAGCTGTCCCCCTCGTAGAGGTAGTGCACTTCGCAGTTGGCTTCGAAGTACGACCGCTGTGCTGCGGTCATCTTTGGAAGCCAGTCTTCATCTTCATTGACGATTATTATACTTGGGATACCTCCCGCAATCTTCTTCTTCTTTCCGTATTTCGGGTTTACAATATAATCCTTCTGGCTTCCAACCAACGACTTCCAGCAATGACAGAACTTGAATGGTATGTCGTCGATGATATTATACAACGCCGTCTGGNTGTAATTTGTAAAATCCACATTATTATTATAATAATTATGTAGACCTAAAGACCTCGCCCATGTGGTCTTTCCTGTCCTTGTTGGGCCGCAGATGTAGAGGCTCTTTCTTCTTGTGCCATCATTCGGCTAGATTCAACAAGCCATTCTAAATCAGATAGTGCTCCCGCTGTGGGGTGTAATATGGAATAGGCAGCGGGAGATACCTGGAATACATTATGATTGGCCCAATCGGCTATCCGCTCCGGACAACGGAGCTGAGTAGCCCAGTCAGGAGTTTCGTACTCCGGTTCTACCTCTGGGAACAGCTTGGATGCGGAGTATTCGAATGCTTGGAGTTTGGTGGCCCAATCAAATGGAAATGTAGTTTTCACAAGCGATAGGTACTCATCTCGTGAAGTAGCTGTTGCGAAGATGGTTGCCATCTTCTGATTCTTTGATTCCCAATCTGCTGCACTCTCACCCATTCTACTGGTACTCCCATTACGAACCCCTGTTCGAGCGGAGTACCTACCGCGTGTGTACTGGTCGATCGGATTCTTGAGACAGTAGTCTCTAACCGATCGACTCGATCTAACAGGTTGAACATTAGGATGGTATTGACGATAATCAAGATGATGAGGGTTGGCAGTAACAAGGTTGTACCCCAGTTGTACAAAGGCGTGCAGATGAAACGTACCGTCTGCATGCCTTTCCCGAGTACATAATACATACTTCGGACTAAGAGTAAGCAACAAAGTCCAAAGATAATTACCGACATCCATCGGTTCGGCGGAACATCTGGGGTACGTGAGGAAAATCTCGTTGGAGTCGAATTTGAAATTCGACCCCGGATGGATTCTACGCTCGTTGGGAATTCCTCCATCGGCGCTATCGCTAGAGAATGACATGGACGGCCCACTGCTCAGAATGATGCACTGTGTATTGAGTGTTTTACTCTTGGTACCTGCGCATTGCTCAGGTTCACACAGCTTTATTTATAGGCCGGAGGCCTGGTGGGCCGGATTCGGGACGCGGGGCAATGCGCAATT
Gene Information
|
NCBI Accession
|
YP_009111307.1
|
|
Location
|
157-456 |
|
Protein Name
|
movement protein |
|
Coding Region
|
ATGGAGAAAGGACCTGGCCCACAACTTTATCCTGCGACAATAACAGCCGCAAACCCGGCCGGAGTGGGGAACGACGGAGCTTGGAGATCACTGGTACTCATCTTTACCATCGTGAGCATAACTTTAGCAGCAATAGCTGGATCTTACTATCTTTGTGTGAAGGATTGCCTCCTGACCTGGAGAGCGCGGCGATCCAGGACAGTGACGGAGCTAGGGTTTGGGACCACGCCGCAGCGTGCTGGAGGTAATTCGGCGGCGTCAGGTAGCGGGGGGCCCAGTAACCCTCCCTTTCCTATCTAA |
|
Protein Sequence
|
MEKGPGPQLYPATITAANPAGVGNDGAWRSLVLIFTIVSITLAAIAGSYYLCVKDCLLTWRARRSRTVTELGFGTTPQRAGGNSAASGSGGPSNPPFPI |
|
NCBI Accession
|
YP_009111308.1
|
|
Location
|
491-1261 |
|
Protein Name
|
capsid protein |
|
Coding Region
|
ATGCCGTCCAGATCTAGGTATACATACAAGAGGAAGAGGCCTGCGAAGCGGGCCCGGGTTGAGCCGTGGCCGCCGGAACTCACGAGGCTTGGGTACACGCCTCGGGATACTGTTCTGCGGGGGACCCGCAGAAGAGATGGAAGACCCAGCTTGCAGGTCATCAACTACACTTGGAAGAACGATGGAAGTGCGGTGACGATCGGAAACGGCGGAGGCGTTTATCTTCTAACGGAGTTTCCCCGGGGAGATGCTGAGGATCAGCGTCACACCGGGGAAACTCTCACCTACAAGGTGAGCTTGAATCTGCAGTTTGCCGTTCAGGAGGATTACAGGAAATACTGTAATCGGGCCCAGAATATGGTATTTCTGGTGTACGATGCGCAGCCAACCGGGACCAATCCCAAAATTACTGATATATTCCATATTGCGGCCTCGCAATTCTTCCCAATTCCGGCCACCTGGATGGTTTCCCGGGAAAATTCGCATCGATTCGTCATCAAGAGGAAGTGGATGTTCATCACCGAAGTGAACGGGTCGGGGACAGCGAAAGACTACACTAACGCGCCGTGCTATCCGGCGCATTTCAGTTTAATTTTCAAGAGGTTCGTTCAGCGTTTGGGCGTTCGAACCGAATGGAAAAATTCAACTGAGGGTGGAATTGGAGCCATCTCCAAGGGTGCGATGTATTTAATTATAGCGCCGGGAAATGGCATGCCTCTCGAGGCTAGAGGGAATATCCGTCTGTATTTCAAATCAATTGGAAATCAATAA |
|
Protein Sequence
|
MPSRSRYTYKRKRPAKRARVEPWPPELTRLGYTPRDTVLRGTRRRDGRPSLQVINYTWKNDGSAVTIGNGGGVYLLTEFPRGDAEDQRHTGETLTYKVSLNLQFAVQEDYRKYCNRAQNMVFLVYDAQPTGTNPKITDIFHIAASQFFPIPATWMVSRENSHRFVIKRKWMFITEVNGSGTAKDYTNAPCYPAHFSLIFKRFVQRLGVRTEWKNSTEGGIGAISKGAMYLIIAPGNGMPLEARGNIRLYFKSIGNQ |
|
NCBI Accession
|
YP_009111309.1
|
|
Location
|
1421-1705,1915-2598 |
|
Protein Name
|
replication-associated protein RepB |
|
Coding Region
|
ATGTCATTCTCTAGCGATAGCGCCGATGGAGGAATTCCCAACGAGCGTAGAATCCATCCGGGGTCGAATTTCAAATTCGACTCCAACGAGATTTTCCTCACGTACCCCAGATGTTCCGCCGAACCGATGGATGTCGGTAATTATCTTTGGACTTTGTTGCTTACTCTTAGTCCGAAGTATGTATTATGTACTCGGGAAAGGCATGCAGACGGTACGTTTCATCTGCACGCCTTTGTACAACTGGGGTACAACCTTGTTACTGCCAACCCTCATCATCTTGATTATCGTCAATACCATCCTAATGTTCAACCTGTTAGATCGAGTCGATCGGTTAGAGACTACTGTCTCAAGAATCCGATCGACCAGTACACACGCGGTAGGTACTCCGCTCGAACAGGGGTTCGTAATGGGAGTACCAGTAGAATGGGTGAGAGTGCAGCAGATTGGGAATCAAAGAATCAGAAGATGGCAACCATCTTCGCAACAGCTACTTCACGAGATGAGTACCTATCGCTTGTGAAAACTACATTTCCATTTGATTGGGCCACCAAACTCCAAGCATTCGAATACTCCGCATCCAAGCTGTTCCCAGAGGTAGAACCGGAGTACGAAACTCCTGACTGGGCTACTCAGCTCCGTTGTCCGGAGCGGATAGCCGATTGGGCCAATCATAATGTATTCCAGACGGCGTTGTATAATATCATCGACGACATACCATTCAAGTTCTGTCATTGCTGGAAGTCGTTGGTTGGAAGCCAGAAGGATTATATTGTAAACCCGAAATACGGAAAGAAGAAGAAGATTGCGGGAGGTATCCCAAGTATAATAATCGTCAATGAAGATGAAGACTGGCTTCCAAAGATGACCGCAGCACAGCGGTCGTACTTCGAAGCCAACTGCGAAGTGCACTACCTCTACGAGGGGGACAGCTTTTTCGCAGTGCCTGAACAGGCTTCGCCTGATTTGTAA |
|
Protein Sequence
|
MSFSSDSADGGIPNERRIHPGSNFKFDSNEIFLTYPRCSAEPMDVGNYLWTLLLTLSPKYVLCTRERHADGTFHLHAFVQLGYNLVTANPHHLDYRQYHPNVQPVRSSRSVRDYCLKNPIDQYTRGRYSARTGVRNGSTSRMGESAADWESKNQKMATIFATATSRDEYLSLVKTTFPFDWATKLQAFEYSASKLFPEVEPEYETPDWATQLRCPERIADWANHNVFQTALYNIIDDIPFKFCHCWKSLVGSQKDYIVNPKYGKKKKIAGGIPSIIIVNEDEDWLPKMTAAQRSYFEANCEVHYLYEGDSFFAVPEQASPDL |
|
NCBI Accession
|
YP_009111310.1
|
|
Location
|
1756-2598 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGTCATTCTCTAGCGATAGCGCCGATGGAGGAATTCCCAACGAGCGTAGAATCCATCCGGGGTCGAATTTCAAATTCGACTCCAACGAGATTTTCCTCACGTACCCCAGATGTTCCGCCGAACCGATGGATGTCGGTAATTATCTTTGGACTTTGTTGCTTACTCTTAGTCCGAAGTATGTATTATGTACTCGGGAAAGGCATGCAGACGGTACGTTTCATCTGCACGCCTTTGTACAACTGGGGTACAACCTTGTTACTGCCAACCCTCATCATCTTGATTATCGTCAATACCATCCTAATGTTCAACCTGTTAGATCGAGTCGATCGGTTAGAGACTACTGTCTCAAGAATCCGATCGACCAGTACACACGCGGTAGGTACTCCGCTCGAACAGGGGTTCGTAATGGGAGTACCAGTAGAATGGGTGAGAGTGCAGCAGATTGGGAATCAAAGAATCAGAAGATGGCAACCATCTTCGCAACAGCTACTTCACGAGATGAGTACCTATCGCTTGTGAAAACTACATTTCCATTTGATTGGGCCACCAAACTCCAAGCATTCGAATACTCCGCATCCAAGCTGTTCCCAGAGGTAGAACCGGAGTACGAAACTCCTGACTGGGCTACTCAGCTCCGTTGTCCGGAGCGGATAGCCGATTGGGCCAATCATAATGTATTCCAGGTATCTCCCGCTGCCTATTCCATATTACACCCCACAGCGGGAGCACTATCTGATTTAGAATGGCTTGTTGAATCTAGCCGAATGATGGCACAAGAAGAAAGAGCCTCTACATCTGCGGCCCAACAAGGACAGGAAAGACCACATGGGCGAGGTCTTTAG |
|
Protein Sequence
|
MSFSSDSADGGIPNERRIHPGSNFKFDSNEIFLTYPRCSAEPMDVGNYLWTLLLTLSPKYVLCTRERHADGTFHLHAFVQLGYNLVTANPHHLDYRQYHPNVQPVRSSRSVRDYCLKNPIDQYTRGRYSARTGVRNGSTSRMGESAADWESKNQKMATIFATATSRDEYLSLVKTTFPFDWATKLQAFEYSASKLFPEVEPEYETPDWATQLRCPERIADWANHNVFQVSPAAYSILHPTAGALSDLEWLVESSRMMAQEERASTSAAQQGQERPHGRGL |