Sweet potato symptomless virus 1

Basic Information

Genus Mastrevirus
NCBI Assembly GCF_002158695.1
Isolate Taiwan
Release date 2017/5/28
Submitter Cao,M., Lan,P., Li,F., Abad,J., Zhou,C., Li,R.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_034630
ATGAATTCATCTGTCCCTATCTTTGATCCCTTTCCGGTATATTCTCCGACGAACCCTAAGTCGTCGTCCGATAGTCGTTTAAATTCGTTAATTACAGTTATTGTTGTGACTCTGTTATTTGTTGGTATTGTATACCTAGCTTATGTGCTGTTTTTGAAAGATGTGATTTTGCTGTTGAAGGCGAAACGACAGAGAACGACGACGGAGATAGGGTTCGGTCAGACCCCTAGGGTGAATACACAAGGTGGAGGCGTGGGATAATTACAAGTATAACCGGTGGTTGGAAATCATGTCTACGAGGGGTAAGCGGATTGTTACCTACAAGCGAGATCCGGAAAGGCAGAAACGCCAGAGAATAAAAAAAGCTCTGGGCGTTTCTACCTGGGATGATGTGGCTAGACTTGCAGCCACACCTGCAATATCACTACGAGATCGACCGAGTCTGCAGGTAGCTCAGTTTACCTGGACTCAAAATAAAGTGCCTGTTGTGTTCAACCCAGGGGGTACCGTGTATTTGATGACGATGTACCCCTTTGGGGGATCTGAGGCTCAGAGACATGCTAATACGACCATGACGTACAAGATGTCAATTGGCCAGGAAGTGCAACTTGATAAGGCTTTCTATGCGAGTTGTGGCATGTACTATATGCAGTGGTGGTTAGTTTACGATAAGGCGTCAACGGGTACGCTGCCAGCGACCTCAACCATTTTCGATACGTTCTACCAGAACTTCCCAAATACGTGGACTGTTGCAAGAGATGTGTGTCACAGATTCATAGTAAAAAGAAAATGGAAGACGATTCTGACGTCGAATGGTGTGGATATTGGTAAACCTGGTCAGATCTGCGCTCCGGCCAAACAACGTGTGGGTGTTAATAAGTTCTTTAAAAAACTCGGTGTAAAAACCGAGTGGAAGAACAGCAGTACCGGTGACATAGGAGATATAAAATCTGGTGCATTATACCTGATAGGTGCGCCAAGTCATGGAGTTGTTTGTAATGTATACGGCAGATTTAGGGTATACTTTAAGTCTGTCGGAAATCAATGATATTTTATTTTAATAAAATTTTACTCCCTCCGTCCCTAATTGTTTGTCTCATTTACTTTTTGCACGGTTTTTAATACAACACAACAAATGATACTCACTTTCCAATTTTGCCCTTCAAAAGTAGGTGTTATTTGTACAAAGTACAATTGTACATTTGTACTTATCTCATTAATGGTCTAAAAAGTTGAAAAGTCAAAAGGGTAAATTGGGAAATGTAAAATGATAGTTATGTTTAATTTTAGAAAGTGGACACTATTTTGGGACAAGCTAAAAAGGAAAGTAAGACAAGTAAAATGGGACGGAGGGAGTATGTTGTTTGAGTATGAAGCGTCGCGTAATGTATGAGAAGTGTCGCCGAAAAACCCATGCCGAGAGAACTTATGCAATAAAACACGAAAAACGCTTGAGTTTATTAATATACTTAGGCCGAAGGCCTAATAAATGTCTCCGTAGGAGACATATAATGGACAGTACAATTGGCTAAGAAATATGATTTCTGGTCTGGTGACATATCGCGAAGCCAATCTTCGTCTTGATTAACTAGTATTATACATGGTATACCCCCTGGGATGACCTTCTTCTTGCCGTATTTGGGGTTGACTGTGAAATCCTTCTGGCCGCCGATCAATTGCTTCCAGCTTGGGAAGAATTTGAATGGGATGTCGTCGGCGATGTTGTATGTGGCATGACAGTCGTACGTGGAGAAGTCAACCCCACCGTTCCAGTAGTTGTGCCGCCCGAGTTGTCTTGCCCAGGTTGTCTTTGCTGTGCGGGTGGGACCACATATGTAGAGGGACCTGGGTCTTCGGAGGGCTCTTTCACTGGGTTCCTAGCAAGATCATCCAGCCATTCAAGATCTTGTCTTGCAGTATCATAAGAACAATTATGTATGAGGATATAGTCTTCGAGGTGTACCAGGTATAGTTCACGATTGATCCAGTCCTGGATGTCCTCATGGCACTGCAAGGTGAGAGGATCGAAAGGGGAAACATATGGGGGGGCAGTTGAAGGGAATAGCCTTTCAGCAAAATATTCCAGTTGTTGCAGACGAGTTGCGTAGTCTGCGGGGAATTCCTGCTTCACTCGGTTAAGGTACTCCGCCTTAGACGTCGACGTAAAGATGATATCTCTCCATCGGTCATCCCTTCGTGAAGGCGATACTTTATGATTCTGGAATTCCCCCCAGACGATAGGAGGTTGTTCCTTTGATATGTATTCAAGGACTGCTGCAGAGTCACGAGCAGGTTGTATGTTTGGATGGTAATTATTAAGATCAAAGAAATCGACCCGACGAGTGATAATCCGACGAGCACATTGAAAGAGAACGTGAAAATGGAGGGAACCATCCTGATGATGTTCAGGAGCAACAGCGAGAAAGAGAAGATTAAAAGGTGTGAGGAGAGTGATAAGCATTTGCTGAATGATCTCAGCTGTGAGATCACATTGAGAGTAGGTGAGAAAACCATATTTGGAACTGAATGAGAAAACTGATCTTGCTCTGGGTTGACGAGGCATGATGTATTTGTAGAGGGGAGGTAACGTGCACTCTGAAAAACTCTATCCTATATACTCAAATGTAACACCCCTATTTATAGGGGTGGGCCTTGTGCCGAATTGGGCCTCGTGGCTGGGTAATAAGATTCCCCCAGCCACGAGGGCCACTTCGGCGGGAATTTTCCCGCCGAAAAAATTAAAAGAAGGGCAAAATAGTCATTTGCCAATGTGAACGCGTTCAAAGTAAAGTTGACGTTGACGTTTGTGTTACGTGTTAAAGTATTTCTTTTTAAAAAGGAAGATAAGACGTCGTCATCTTATCTTATCAGAAGATGACATGACTG

Gene Information

NCBI Accession YP_009362980.1
Location 1-261
Gene Name V1
Protein Name movement protein
Coding Region ATGAATTCATCTGTCCCTATCTTTGATCCCTTTCCGGTATATTCTCCGACGAACCCTAAGTCGTCGTCCGATAGTCGTTTAAATTCGTTAATTACAGTTATTGTTGTGACTCTGTTATTTGTTGGTATTGTATACCTAGCTTATGTGCTGTTTTTGAAAGATGTGATTTTGCTGTTGAAGGCGAAACGACAGAGAACGACGACGGAGATAGGGTTCGGTCAGACCCCTAGGGTGAATACACAAGGTGGAGGCGTGGGATAA
Protein Sequence MNSSVPIFDPFPVYSPTNPKSSSDSRLNSLITVIVVTLLFVGIVYLAYVLFLKDVILLLKAKRQRTTTEIGFGQTPRVNTQGGGVG

NCBI Accession YP_009362981.1
Location 290-1048
Gene Name V2
Protein Name coat protein
Coding Region ATGTCTACGAGGGGTAAGCGGATTGTTACCTACAAGCGAGATCCGGAAAGGCAGAAACGCCAGAGAATAAAAAAAGCTCTGGGCGTTTCTACCTGGGATGATGTGGCTAGACTTGCAGCCACACCTGCAATATCACTACGAGATCGACCGAGTCTGCAGGTAGCTCAGTTTACCTGGACTCAAAATAAAGTGCCTGTTGTGTTCAACCCAGGGGGTACCGTGTATTTGATGACGATGTACCCCTTTGGGGGATCTGAGGCTCAGAGACATGCTAATACGACCATGACGTACAAGATGTCAATTGGCCAGGAAGTGCAACTTGATAAGGCTTTCTATGCGAGTTGTGGCATGTACTATATGCAGTGGTGGTTAGTTTACGATAAGGCGTCAACGGGTACGCTGCCAGCGACCTCAACCATTTTCGATACGTTCTACCAGAACTTCCCAAATACGTGGACTGTTGCAAGAGATGTGTGTCACAGATTCATAGTAAAAAGAAAATGGAAGACGATTCTGACGTCGAATGGTGTGGATATTGGTAAACCTGGTCAGATCTGCGCTCCGGCCAAACAACGTGTGGGTGTTAATAAGTTCTTTAAAAAACTCGGTGTAAAAACCGAGTGGAAGAACAGCAGTACCGGTGACATAGGAGATATAAAATCTGGTGCATTATACCTGATAGGTGCGCCAAGTCATGGAGTTGTTTGTAATGTATACGGCAGATTTAGGGTATACTTTAAGTCTGTCGGAAATCAATGA
Protein Sequence MSTRGKRIVTYKRDPERQKRQRIKKALGVSTWDDVARLAATPAISLRDRPSLQVAQFTWTQNKVPVVFNPGGTVYLMTMYPFGGSEAQRHANTTMTYKMSIGQEVQLDKAFYASCGMYYMQWWLVYDKASTGTLPATSTIFDTFYQNFPNTWTVARDVCHRFIVKRKWKTILTSNGVDIGKPGQICAPAKQRVGVNKFFKKLGVKTEWKNSSTGDIGDIKSGALYLIGAPSHGVVCNVYGRFRVYFKSVGNQ

NCBI Accession YP_009362982.1
Location 1470-1877,1964-2563
Gene Name C1/C2
Protein Name replication-associated protein
Coding Region ATGCCTCGTCAACCCAGAGCAAGATCAGTTTTCTCATTCAGTTCCAAATATGGTTTTCTCACCTACTCTCAATGTGATCTCACAGCTGAGATCATTCAGCAAATGCTTATCACTCTCCTCACACCTTTTAATCTTCTCTTTCTCGCTGTTGCTCCTGAACATCATCAGGATGGTTCCCTCCATTTTCACGTTCTCTTTCAATGTGCTCGTCGGATTATCACTCGTCGGGTCGATTTCTTTGATCTTAATAATTACCATCCAAACATACAACCTGCTCGTGACTCTGCAGCAGTCCTTGAATACATATCAAAGGAACAACCTCCTATCGTCTGGGGGGAATTCCAGAATCATAAAGTATCGCCTTCACGAAGGGATGACCGATGGAGAGATATCATCTTTACGTCGACGTCTAAGGCGGAGTACCTTAACCGAGTGAAGCAGGAATTCCCCGCAGACTACGCAACTCGTCTGCAACAACTGGAATATTTTGCTGAAAGGCTATTCCCTTCAACTGCCCCCCCATATGTTTCCCCTTTCGATCCTCTCACCTTGCAGTGCCATGAGGACATCCAGGACTGGATCAATCGTGAACTATACCTGGAACCCAGTGAAAGAGCCCTCCGAAGACCCAGGTCCCTCTACATATGTGGTCCCACCCGCACAGCAAAGACAACCTGGGCAAGACAACTCGGGCGGCACAACTACTGGAACGGTGGGGTTGACTTCTCCACGTACGACTGTCATGCCACATACAACATCGCCGACGACATCCCATTCAAATTCTTCCCAAGCTGGAAGCAATTGATCGGCGGCCAGAAGGATTTCACAGTCAACCCCAAATACGGCAAGAAGAAGGTCATCCCAGGGGGTATACCATGTATAATACTAGTTAATCAAGACGAAGATTGGCTTCGCGATATGTCACCAGACCAGAAATCATATTTCTTAGCCAATTGTACTGTCCATTATATGTCTCCTACGGAGACATTTATTAGGCCTTCGGCCTAA
Protein Sequence MPRQPRARSVFSFSSKYGFLTYSQCDLTAEIIQQMLITLLTPFNLLFLAVAPEHHQDGSLHFHVLFQCARRIITRRVDFFDLNNYHPNIQPARDSAAVLEYISKEQPPIVWGEFQNHKVSPSRRDDRWRDIIFTSTSKAEYLNRVKQEFPADYATRLQQLEYFAERLFPSTAPPYVSPFDPLTLQCHEDIQDWINRELYLEPSERALRRPRSLYICGPTRTAKTTWARQLGRHNYWNGGVDFSTYDCHATYNIADDIPFKFFPSWKQLIGGQKDFTVNPKYGKKKVIPGGIPCIILVNQDEDWLRDMSPDQKSYFLANCTVHYMSPTETFIRPSA

NCBI Accession YP_009362983.1
Location 1673-2563
Gene Name C1
Protein Name replication-associated protein A
Coding Region ATGCCTCGTCAACCCAGAGCAAGATCAGTTTTCTCATTCAGTTCCAAATATGGTTTTCTCACCTACTCTCAATGTGATCTCACAGCTGAGATCATTCAGCAAATGCTTATCACTCTCCTCACACCTTTTAATCTTCTCTTTCTCGCTGTTGCTCCTGAACATCATCAGGATGGTTCCCTCCATTTTCACGTTCTCTTTCAATGTGCTCGTCGGATTATCACTCGTCGGGTCGATTTCTTTGATCTTAATAATTACCATCCAAACATACAACCTGCTCGTGACTCTGCAGCAGTCCTTGAATACATATCAAAGGAACAACCTCCTATCGTCTGGGGGGAATTCCAGAATCATAAAGTATCGCCTTCACGAAGGGATGACCGATGGAGAGATATCATCTTTACGTCGACGTCTAAGGCGGAGTACCTTAACCGAGTGAAGCAGGAATTCCCCGCAGACTACGCAACTCGTCTGCAACAACTGGAATATTTTGCTGAAAGGCTATTCCCTTCAACTGCCCCCCCATATGTTTCCCCTTTCGATCCTCTCACCTTGCAGTGCCATGAGGACATCCAGGACTGGATCAATCGTGAACTATACCTGGTACACCTCGAAGACTATATCCTCATACATAATTGTTCTTATGATACTGCAAGACAAGATCTTGAATGGCTGGATGATCTTGCTAGGAACCCAGTGAAAGAGCCCTCCGAAGACCCAGGTCCCTCTACATATGTGGTCCCACCCGCACAGCAAAGACAACCTGGGCAAGACAACTCGGGCGGCACAACTACTGGAACGGTGGGGTTGACTTCTCCACGTACGACTGTCATGCCACATACAACATCGCCGACGACATCCCATTCAAATTCTTCCCAAGCTGGAAGCAATTGA
Protein Sequence MPRQPRARSVFSFSSKYGFLTYSQCDLTAEIIQQMLITLLTPFNLLFLAVAPEHHQDGSLHFHVLFQCARRIITRRVDFFDLNNYHPNIQPARDSAAVLEYISKEQPPIVWGEFQNHKVSPSRRDDRWRDIIFTSTSKAEYLNRVKQEFPADYATRLQQLEYFAERLFPSTAPPYVSPFDPLTLQCHEDIQDWINRELYLVHLEDYILIHNCSYDTARQDLEWLDDLARNPVKEPSEDPGPSTYVVPPAQQRQPGQDNSGGTTTGTVGLTSPRTTVMPHTTSPTTSHSNSSQAGSN

NCBI Accession YP_009362984.1
Location 2128-2514
Gene Name C3
Protein Name C3 protein
Coding Region ATGGTTTTCTCACCTACTCTCAATGTGATCTCACAGCTGAGATCATTCAGCAAATGCTTATCACTCTCCTCACACCTTTTAATCTTCTCTTTCTCGCTGTTGCTCCTGAACATCATCAGGATGGTTCCCTCCATTTTCACGTTCTCTTTCAATGTGCTCGTCGGATTATCACTCGTCGGGTCGATTTCTTTGATCTTAATAATTACCATCCAAACATACAACCTGCTCGTGACTCTGCAGCAGTCCTTGAATACATATCAAAGGAACAACCTCCTATCGTCTGGGGGGAATTCCAGAATCATAAAGTATCGCCTTCACGAAGGGATGACCGATGGAGAGATATCATCTTTACGTCGACGTCTAAGGCGGAGTACCTTAACCGAGTGA
Protein Sequence MVFSPTLNVISQLRSFSKCLSLSSHLLIFSFSLLLLNIIRMVPSIFTFSFNVLVGLSLVGSISLILIITIQTYNLLVTLQQSLNTYQRNNLLSSGGNSRIIKYRLHEGMTDGEISSLRRRLRRSTLTE

References More References in PubMed

1

First Report of Sweet potato leaf curl virus in Peru.

Fuentes S, et al.  Plant Dis. 2003 Jan;87(1):98. doi: 10.1094/PDIS.2003.87.1.98C.

PMID: 30812710
2

Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: a generic method for diagnosis, discovery and sequencing of viruses.

Kreuze JF, et al.  Virology. 2009 May 25;388(1):1-7. doi: 10.1016/j.virol.2009.03.024. Epub 2009 Apr 23.

PMID: 19394993