Sugarcane white streak virus
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_000919135.1 |
| Isolate |
Sudan |
| Release date |
2015/2/22 |
| Submitter |
Candresse,T., Filloux,D., Muhire,B., Julian,C., Galzi,S., Fort,G., Bernardo,P., Daugrois,J.H., Fernandez,E., Martin,D.P., Varsani,A., Roumagnac,P. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
TAATATTACCGCTTTCCCCCGCAAGGCCCGCGAGCCGGCCCGTGTGCGCTCTATGGGCCGGCGAGCTTTAGACCAAAGATCGTGACTGTCAACGTCGTGACGTGATTCGTTTGACTTTAGCCTTCCTTGGCCTGGAAGAAATATTCTTTATATAAAGCATCGTCGTGTCTTTCTGGTTAATGGCGCATCATATGAAGCTTTTACAGGTATCACCAACTGTTGTGTATACCCCATCTCCTCGTCCACCGTCGACAGACGGTGATTCGTGGTCCCATCTGATCTTCGCTCTCGTAGTGACTATTTGTGTAGTCCTCACAATTTACGTGGTTTATCGTTGGTTTGGCAGGGATTTAATAATCCTATTCCGTGCCAGAAGACAGAGATCCACGGAGGAGATCGGATTTGGTAATACGCCGGTAAATCCACGTGCTGGACCGGGTGTTCAGGTCGTGGGCGGAGCAATCCCAGGATAAGGGATTAACGTGGTCTGGAACCTACTCAGATTTTCGACGCGCTTTGGATATGGCTGGACCGATGCGTAGAAAACCTGCTAGGTCTTCACGCAGGATTGTACCGTGGCCTGCTGAGGCGCTGCGTCGGGGTTATACCCCGAGGAATTCAGTACTTCGGGGTACTCGTTCCGGCCGGTCTGATCGCAGACCATCTCTACAGGTGATAAACTACAGGTGGTCGGGTCAGTCAGCACCAATATTTAAAACCGGAGGGGCGACATATTTATCGTCGACCTTTGCCAGAGGCAATGGAGAAGACCAAAGACGGGGAGCGGAAACGATCATATACAAGATAGCGTTCAAGCTCGTGTTTGCTGTGACCTCGTCGCAGTTAAAATACGTATCACGTGGGATGTGCGTCCTTTGGTTGGTCTACGACGCACAGCCTACTGGGATTAAACCGGAACCGAAGGATATCTTCGACTACGATACGGGGTTATCGCAATCTCCTATGACTTGGTCTGTACAGAGAGCGCTGTGCAACAGATTCGTCGTCAAAAGACGATGGAAGTTCGAGCTATCGGTGAATGGTGTATCTGCGGCTGATGACTCTAGTGATGCACAGCTTAGCGGGAAGACAATTCCCTATTCCCGGAGGGGTTTTGACAAGTTCTGTAAGCGTCTTGCAACGCGTACAGAATGGAAAAACACCGAAGGGGGTGACATAGGCGACATACAGAAGGGGGCATTATATGTAATAGCGGCACCTGGTAACGCGATGGAATTTCAAGCCATCGGAAATATTAGGGTATATTTTAAATCCGTAGGATTGCAGTAGTTGTTAGGAAATAATTGTAATTTTCACGGCAGTGAAATATTAAAATAGTTGTACTATTTTATTCATTATGCCAGCAACGCTCACTTACAAATTACACACATATACAATATAGGGGGGTAGGACAAAGCAGGCGGCTATGGGCGCGATAGAGGGCAACACACTAAAAAAAAACTGGAACTAGGACGACCCTGTCCCGTCAGGGACATCCTCCTGTGCCTCAGGCACAGGAGTATCACCTCCGAAGAATTTTTCACCAGGCTTCATCACGTAGACATCACAGTTGTTCACAAAGTAGTCCATCTGGGATGGACTAAGAACCGGGAGCCAGTCATCGTCAGGGTTCTGAAGTATTATGCATGGGATTCCTCCCGGGATCTCTTTGCGTTTCGCGTACTTAGGGTTGACGATGAAGTCCCTCTGACAGCCGACGAGTTGTTTCCAATTTGGACAGAATTTGAAGGGTACATCATCGAGAATGTTGTATTTGGCGAGGGTATCATACGCTGTGAAGTCCACCATGTGTTGCCAGTAATTGTGTCGTCCGAGGCTCCTAGCCCACGTAGATTTACCAGTTCTTGTAGGTCCAACGATGTACAGGCTCCGTCGGCGTTGTGCGGCGTCAAATGCGTCGGTGATATCCTACAATGAATATAGTGATAAGTATATTGCGTAACGAAAATGAATAGAACCGGAATCAGAACTTACCATATCAAGTTCGTCATAGACCCACCTGTCAATGATTTCCCTGCAAAATAAGTCGGGTTCCGAAGGAGGAAATGGATTAACGTATTCACGGACCGGTTCTGGGAATAACTTGGATGCACTGTATTCAAACTGCTGCAAACGTGTGGCCCAATCAAATGGGAATGTATTCCTCACACGAGTAAGGTAGTCGTCCTTACTCGTTGAGGTATTGATGATGTCCCTCATCAGGGAGTCCTTGGTACCGGAATTCCCAGAGCGTGGTATTGCGGAAGTATTGGATCTTGACCCACGTGGTTGAAATGACCCCTCCTCGAAAGACGTGATAGGGTCCTTGAGAATGTATGCACGGACGTTGTCAGGGCTTTTAGCTGGTTGTATATTGGGATGGTGACCACAAATATCGAAGTAATGAGGATTTCGAGTGTACATGGTCTTATCAGTCTGAAGAAGGATATGCAGATGGTTTGAACCATCTGCATGATGCTCTTGAGAGCATAAGATGTAGAGAGGCTGAAACCTATGGCAAAGAGTAAGGAGAGTGCGTGCCGCGACATCTACAGATATGTCGCACCTTGGATATGTAAGAAAAATATTCTGGGCTTTGAATTGAAAGACTCTTGGCTGGGAAGTTGATCCTGCTCTAGGATCAGGCCAACTAGTGGTGAACTCCTCTAAGCCAGGACTTAGTCGCTGAGCGGCTATTCCCTGGTTGCTACTATCCGTACTCATTGCAAACTCTCTCGCTACTTGAAATCAGAATCCTCCACCCTACGTGGCGTTTTTATAGCCCCTATAGGGGCTATTGGGCTACTGGGCCTTGCGGGGGAAAGCGTAT
Gene Information
|
NCBI Accession
|
YP_009026386.1
|
|
Location
|
180-473 |
|
Protein Name
|
movement protein |
|
Coding Region
|
ATGGCGCATCATATGAAGCTTTTACAGGTATCACCAACTGTTGTGTATACCCCATCTCCTCGTCCACCGTCGACAGACGGTGATTCGTGGTCCCATCTGATCTTCGCTCTCGTAGTGACTATTTGTGTAGTCCTCACAATTTACGTGGTTTATCGTTGGTTTGGCAGGGATTTAATAATCCTATTCCGTGCCAGAAGACAGAGATCCACGGAGGAGATCGGATTTGGTAATACGCCGGTAAATCCACGTGCTGGACCGGGTGTTCAGGTCGTGGGCGGAGCAATCCCAGGATAA |
|
Protein Sequence
|
MAHHMKLLQVSPTVVYTPSPRPPSTDGDSWSHLIFALVVTICVVLTIYVVYRWFGRDLIILFRARRQRSTEEIGFGNTPVNPRAGPGVQVVGGAIPG |
|
NCBI Accession
|
YP_009026387.1
|
|
Location
|
523-1290 |
|
Protein Name
|
capsid protein |
|
Coding Region
|
ATGGCTGGACCGATGCGTAGAAAACCTGCTAGGTCTTCACGCAGGATTGTACCGTGGCCTGCTGAGGCGCTGCGTCGGGGTTATACCCCGAGGAATTCAGTACTTCGGGGTACTCGTTCCGGCCGGTCTGATCGCAGACCATCTCTACAGGTGATAAACTACAGGTGGTCGGGTCAGTCAGCACCAATATTTAAAACCGGAGGGGCGACATATTTATCGTCGACCTTTGCCAGAGGCAATGGAGAAGACCAAAGACGGGGAGCGGAAACGATCATATACAAGATAGCGTTCAAGCTCGTGTTTGCTGTGACCTCGTCGCAGTTAAAATACGTATCACGTGGGATGTGCGTCCTTTGGTTGGTCTACGACGCACAGCCTACTGGGATTAAACCGGAACCGAAGGATATCTTCGACTACGATACGGGGTTATCGCAATCTCCTATGACTTGGTCTGTACAGAGAGCGCTGTGCAACAGATTCGTCGTCAAAAGACGATGGAAGTTCGAGCTATCGGTGAATGGTGTATCTGCGGCTGATGACTCTAGTGATGCACAGCTTAGCGGGAAGACAATTCCCTATTCCCGGAGGGGTTTTGACAAGTTCTGTAAGCGTCTTGCAACGCGTACAGAATGGAAAAACACCGAAGGGGGTGACATAGGCGACATACAGAAGGGGGCATTATATGTAATAGCGGCACCTGGTAACGCGATGGAATTTCAAGCCATCGGAAATATTAGGGTATATTTTAAATCCGTAGGATTGCAGTAG |
|
Protein Sequence
|
MAGPMRRKPARSSRRIVPWPAEALRRGYTPRNSVLRGTRSGRSDRRPSLQVINYRWSGQSAPIFKTGGATYLSSTFARGNGEDQRRGAETIIYKIAFKLVFAVTSSQLKYVSRGMCVLWLVYDAQPTGIKPEPKDIFDYDTGLSQSPMTWSVQRALCNRFVVKRRWKFELSVNGVSAADDSSDAQLSGKTIPYSRRGFDKFCKRLATRTEWKNTEGGDIGDIQKGALYVIAAPGNAMEFQAIGNIRVYFKSVGLQ |
|
NCBI Accession
|
YP_009026388.1
|
|
Location
|
1468-1929,1996-2724 |
|
Protein Name
|
replication associated protein |
|
Coding Region
|
ATGAGTACGGATAGTAGCAACCAGGGAATAGCCGCTCAGCGACTAAGTCCTGGCTTAGAGGAGTTCACCACTAGTTGGCCTGATCCTAGAGCAGGATCAACTTCCCAGCCAAGAGTCTTTCAATTCAAAGCCCAGAATATTTTTCTTACATATCCAAGGTGCGACATATCTGTAGATGTCGCGGCACGCACTCTCCTTACTCTTTGCCATAGGTTTCAGCCTCTCTACATCTTATGCTCTCAAGAGCATCATGCAGATGGTTCAAACCATCTGCATATCCTTCTTCAGACTGATAAGACCATGTACACTCGAAATCCTCATTACTTCGATATTTGTGGTCACCATCCCAATATACAACCAGCTAAAAGCCCTGACAACGTCCGTGCATACATTCTCAAGGACCCTATCACGTCTTTCGAGGAGGGGTCATTTCAACCACGTGGGTCAAGATCCAATACTTCCGCAATACCACGCTCTGGGAATTCCGGTACCAAGGACTCCCTGATGAGGGACATCATCAATACCTCAACGAGTAAGGACGACTACCTTACTCGTGTGAGGAATACATTCCCATTTGATTGGGCCACACGTTTGCAGCAGTTTGAATACAGTGCATCCAAGTTATTCCCAGAACCGGTCCGTGAATACGTTAATCCATTTCCTCCTTCGGAACCCGACTTATTTTGCAGGGAAATCATTGACAGGTGGGTCTATGACGAACTTGATATGGATATCACCGACGCATTTGACGCCGCACAACGCCGACGGAGCCTGTACATCGTTGGACCTACAAGAACTGGTAAATCTACGTGGGCTAGGAGCCTCGGACGACACAATTACTGGCAACACATGGTGGACTTCACAGCGTATGATACCCTCGCCAAATACAACATTCTCGATGATGTACCCTTCAAATTCTGTCCAAATTGGAAACAACTCGTCGGCTGTCAGAGGGACTTCATCGTCAACCCTAAGTACGCGAAACGCAAAGAGATCCCGGGAGGAATCCCATGCATAATACTTCAGAACCCTGACGATGACTGGCTCCCGGTTCTTAGTCCATCCCAGATGGACTACTTTGTGAACAACTGTGATGTCTACGTGATGAAGCCTGGTGAAAAATTCTTCGGAGGTGATACTCCTGTGCCTGAGGCACAGGAGGATGTCCCTGACGGGACAGGGTCGTCCTAG |
|
Protein Sequence
|
MSTDSSNQGIAAQRLSPGLEEFTTSWPDPRAGSTSQPRVFQFKAQNIFLTYPRCDISVDVAARTLLTLCHRFQPLYILCSQEHHADGSNHLHILLQTDKTMYTRNPHYFDICGHHPNIQPAKSPDNVRAYILKDPITSFEEGSFQPRGSRSNTSAIPRSGNSGTKDSLMRDIINTSTSKDDYLTRVRNTFPFDWATRLQQFEYSASKLFPEPVREYVNPFPPSEPDLFCREIIDRWVYDELDMDITDAFDAAQRRRSLYIVGPTRTGKSTWARSLGRHNYWQHMVDFTAYDTLAKYNILDDVPFKFCPNWKQLVGCQRDFIVNPKYAKRKEIPGGIPCIILQNPDDDWLPVLSPSQMDYFVNNCDVYVMKPGEKFFGGDTPVPEAQEDVPDGTGSS |
|
NCBI Accession
|
YP_009026389.1
|
|
Location
|
1930-2724 |
|
Protein Name
|
RepA |
|
Coding Region
|
ATGAGTACGGATAGTAGCAACCAGGGAATAGCCGCTCAGCGACTAAGTCCTGGCTTAGAGGAGTTCACCACTAGTTGGCCTGATCCTAGAGCAGGATCAACTTCCCAGCCAAGAGTCTTTCAATTCAAAGCCCAGAATATTTTTCTTACATATCCAAGGTGCGACATATCTGTAGATGTCGCGGCACGCACTCTCCTTACTCTTTGCCATAGGTTTCAGCCTCTCTACATCTTATGCTCTCAAGAGCATCATGCAGATGGTTCAAACCATCTGCATATCCTTCTTCAGACTGATAAGACCATGTACACTCGAAATCCTCATTACTTCGATATTTGTGGTCACCATCCCAATATACAACCAGCTAAAAGCCCTGACAACGTCCGTGCATACATTCTCAAGGACCCTATCACGTCTTTCGAGGAGGGGTCATTTCAACCACGTGGGTCAAGATCCAATACTTCCGCAATACCACGCTCTGGGAATTCCGGTACCAAGGACTCCCTGATGAGGGACATCATCAATACCTCAACGAGTAAGGACGACTACCTTACTCGTGTGAGGAATACATTCCCATTTGATTGGGCCACACGTTTGCAGCAGTTTGAATACAGTGCATCCAAGTTATTCCCAGAACCGGTCCGTGAATACGTTAATCCATTTCCTCCTTCGGAACCCGACTTATTTTGCAGGGAAATCATTGACAGGTGGGTCTATGACGAACTTGATATGGTAAGTTCTGATTCCGGTTCTATTCATTTTCGTTACGCAATATACTTATCACTATATTCATTGTAG |
|
Protein Sequence
|
MSTDSSNQGIAAQRLSPGLEEFTTSWPDPRAGSTSQPRVFQFKAQNIFLTYPRCDISVDVAARTLLTLCHRFQPLYILCSQEHHADGSNHLHILLQTDKTMYTRNPHYFDICGHHPNIQPAKSPDNVRAYILKDPITSFEEGSFQPRGSRSNTSAIPRSGNSGTKDSLMRDIINTSTSKDDYLTRVRNTFPFDWATRLQQFEYSASKLFPEPVREYVNPFPPSEPDLFCREIIDRWVYDELDMVSSDSGSIHFRYAIYLSLYSL |