Sugarcane white streak virus

Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000919135.1
Isolate Sudan
Release date 2015/2/22
Submitter Candresse,T., Filloux,D., Muhire,B., Julian,C., Galzi,S., Fort,G., Bernardo,P., Daugrois,J.H., Fernandez,E., Martin,D.P., Varsani,A., Roumagnac,P.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_023989
TAATATTACCGCTTTCCCCCGCAAGGCCCGCGAGCCGGCCCGTGTGCGCTCTATGGGCCGGCGAGCTTTAGACCAAAGATCGTGACTGTCAACGTCGTGACGTGATTCGTTTGACTTTAGCCTTCCTTGGCCTGGAAGAAATATTCTTTATATAAAGCATCGTCGTGTCTTTCTGGTTAATGGCGCATCATATGAAGCTTTTACAGGTATCACCAACTGTTGTGTATACCCCATCTCCTCGTCCACCGTCGACAGACGGTGATTCGTGGTCCCATCTGATCTTCGCTCTCGTAGTGACTATTTGTGTAGTCCTCACAATTTACGTGGTTTATCGTTGGTTTGGCAGGGATTTAATAATCCTATTCCGTGCCAGAAGACAGAGATCCACGGAGGAGATCGGATTTGGTAATACGCCGGTAAATCCACGTGCTGGACCGGGTGTTCAGGTCGTGGGCGGAGCAATCCCAGGATAAGGGATTAACGTGGTCTGGAACCTACTCAGATTTTCGACGCGCTTTGGATATGGCTGGACCGATGCGTAGAAAACCTGCTAGGTCTTCACGCAGGATTGTACCGTGGCCTGCTGAGGCGCTGCGTCGGGGTTATACCCCGAGGAATTCAGTACTTCGGGGTACTCGTTCCGGCCGGTCTGATCGCAGACCATCTCTACAGGTGATAAACTACAGGTGGTCGGGTCAGTCAGCACCAATATTTAAAACCGGAGGGGCGACATATTTATCGTCGACCTTTGCCAGAGGCAATGGAGAAGACCAAAGACGGGGAGCGGAAACGATCATATACAAGATAGCGTTCAAGCTCGTGTTTGCTGTGACCTCGTCGCAGTTAAAATACGTATCACGTGGGATGTGCGTCCTTTGGTTGGTCTACGACGCACAGCCTACTGGGATTAAACCGGAACCGAAGGATATCTTCGACTACGATACGGGGTTATCGCAATCTCCTATGACTTGGTCTGTACAGAGAGCGCTGTGCAACAGATTCGTCGTCAAAAGACGATGGAAGTTCGAGCTATCGGTGAATGGTGTATCTGCGGCTGATGACTCTAGTGATGCACAGCTTAGCGGGAAGACAATTCCCTATTCCCGGAGGGGTTTTGACAAGTTCTGTAAGCGTCTTGCAACGCGTACAGAATGGAAAAACACCGAAGGGGGTGACATAGGCGACATACAGAAGGGGGCATTATATGTAATAGCGGCACCTGGTAACGCGATGGAATTTCAAGCCATCGGAAATATTAGGGTATATTTTAAATCCGTAGGATTGCAGTAGTTGTTAGGAAATAATTGTAATTTTCACGGCAGTGAAATATTAAAATAGTTGTACTATTTTATTCATTATGCCAGCAACGCTCACTTACAAATTACACACATATACAATATAGGGGGGTAGGACAAAGCAGGCGGCTATGGGCGCGATAGAGGGCAACACACTAAAAAAAAACTGGAACTAGGACGACCCTGTCCCGTCAGGGACATCCTCCTGTGCCTCAGGCACAGGAGTATCACCTCCGAAGAATTTTTCACCAGGCTTCATCACGTAGACATCACAGTTGTTCACAAAGTAGTCCATCTGGGATGGACTAAGAACCGGGAGCCAGTCATCGTCAGGGTTCTGAAGTATTATGCATGGGATTCCTCCCGGGATCTCTTTGCGTTTCGCGTACTTAGGGTTGACGATGAAGTCCCTCTGACAGCCGACGAGTTGTTTCCAATTTGGACAGAATTTGAAGGGTACATCATCGAGAATGTTGTATTTGGCGAGGGTATCATACGCTGTGAAGTCCACCATGTGTTGCCAGTAATTGTGTCGTCCGAGGCTCCTAGCCCACGTAGATTTACCAGTTCTTGTAGGTCCAACGATGTACAGGCTCCGTCGGCGTTGTGCGGCGTCAAATGCGTCGGTGATATCCTACAATGAATATAGTGATAAGTATATTGCGTAACGAAAATGAATAGAACCGGAATCAGAACTTACCATATCAAGTTCGTCATAGACCCACCTGTCAATGATTTCCCTGCAAAATAAGTCGGGTTCCGAAGGAGGAAATGGATTAACGTATTCACGGACCGGTTCTGGGAATAACTTGGATGCACTGTATTCAAACTGCTGCAAACGTGTGGCCCAATCAAATGGGAATGTATTCCTCACACGAGTAAGGTAGTCGTCCTTACTCGTTGAGGTATTGATGATGTCCCTCATCAGGGAGTCCTTGGTACCGGAATTCCCAGAGCGTGGTATTGCGGAAGTATTGGATCTTGACCCACGTGGTTGAAATGACCCCTCCTCGAAAGACGTGATAGGGTCCTTGAGAATGTATGCACGGACGTTGTCAGGGCTTTTAGCTGGTTGTATATTGGGATGGTGACCACAAATATCGAAGTAATGAGGATTTCGAGTGTACATGGTCTTATCAGTCTGAAGAAGGATATGCAGATGGTTTGAACCATCTGCATGATGCTCTTGAGAGCATAAGATGTAGAGAGGCTGAAACCTATGGCAAAGAGTAAGGAGAGTGCGTGCCGCGACATCTACAGATATGTCGCACCTTGGATATGTAAGAAAAATATTCTGGGCTTTGAATTGAAAGACTCTTGGCTGGGAAGTTGATCCTGCTCTAGGATCAGGCCAACTAGTGGTGAACTCCTCTAAGCCAGGACTTAGTCGCTGAGCGGCTATTCCCTGGTTGCTACTATCCGTACTCATTGCAAACTCTCTCGCTACTTGAAATCAGAATCCTCCACCCTACGTGGCGTTTTTATAGCCCCTATAGGGGCTATTGGGCTACTGGGCCTTGCGGGGGAAAGCGTAT

Gene Information

NCBI Accession YP_009026386.1
Location 180-473
Protein Name movement protein
Coding Region ATGGCGCATCATATGAAGCTTTTACAGGTATCACCAACTGTTGTGTATACCCCATCTCCTCGTCCACCGTCGACAGACGGTGATTCGTGGTCCCATCTGATCTTCGCTCTCGTAGTGACTATTTGTGTAGTCCTCACAATTTACGTGGTTTATCGTTGGTTTGGCAGGGATTTAATAATCCTATTCCGTGCCAGAAGACAGAGATCCACGGAGGAGATCGGATTTGGTAATACGCCGGTAAATCCACGTGCTGGACCGGGTGTTCAGGTCGTGGGCGGAGCAATCCCAGGATAA
Protein Sequence MAHHMKLLQVSPTVVYTPSPRPPSTDGDSWSHLIFALVVTICVVLTIYVVYRWFGRDLIILFRARRQRSTEEIGFGNTPVNPRAGPGVQVVGGAIPG

NCBI Accession YP_009026387.1
Location 523-1290
Protein Name capsid protein
Coding Region ATGGCTGGACCGATGCGTAGAAAACCTGCTAGGTCTTCACGCAGGATTGTACCGTGGCCTGCTGAGGCGCTGCGTCGGGGTTATACCCCGAGGAATTCAGTACTTCGGGGTACTCGTTCCGGCCGGTCTGATCGCAGACCATCTCTACAGGTGATAAACTACAGGTGGTCGGGTCAGTCAGCACCAATATTTAAAACCGGAGGGGCGACATATTTATCGTCGACCTTTGCCAGAGGCAATGGAGAAGACCAAAGACGGGGAGCGGAAACGATCATATACAAGATAGCGTTCAAGCTCGTGTTTGCTGTGACCTCGTCGCAGTTAAAATACGTATCACGTGGGATGTGCGTCCTTTGGTTGGTCTACGACGCACAGCCTACTGGGATTAAACCGGAACCGAAGGATATCTTCGACTACGATACGGGGTTATCGCAATCTCCTATGACTTGGTCTGTACAGAGAGCGCTGTGCAACAGATTCGTCGTCAAAAGACGATGGAAGTTCGAGCTATCGGTGAATGGTGTATCTGCGGCTGATGACTCTAGTGATGCACAGCTTAGCGGGAAGACAATTCCCTATTCCCGGAGGGGTTTTGACAAGTTCTGTAAGCGTCTTGCAACGCGTACAGAATGGAAAAACACCGAAGGGGGTGACATAGGCGACATACAGAAGGGGGCATTATATGTAATAGCGGCACCTGGTAACGCGATGGAATTTCAAGCCATCGGAAATATTAGGGTATATTTTAAATCCGTAGGATTGCAGTAG
Protein Sequence MAGPMRRKPARSSRRIVPWPAEALRRGYTPRNSVLRGTRSGRSDRRPSLQVINYRWSGQSAPIFKTGGATYLSSTFARGNGEDQRRGAETIIYKIAFKLVFAVTSSQLKYVSRGMCVLWLVYDAQPTGIKPEPKDIFDYDTGLSQSPMTWSVQRALCNRFVVKRRWKFELSVNGVSAADDSSDAQLSGKTIPYSRRGFDKFCKRLATRTEWKNTEGGDIGDIQKGALYVIAAPGNAMEFQAIGNIRVYFKSVGLQ

NCBI Accession YP_009026388.1
Location 1468-1929,1996-2724
Protein Name replication associated protein
Coding Region ATGAGTACGGATAGTAGCAACCAGGGAATAGCCGCTCAGCGACTAAGTCCTGGCTTAGAGGAGTTCACCACTAGTTGGCCTGATCCTAGAGCAGGATCAACTTCCCAGCCAAGAGTCTTTCAATTCAAAGCCCAGAATATTTTTCTTACATATCCAAGGTGCGACATATCTGTAGATGTCGCGGCACGCACTCTCCTTACTCTTTGCCATAGGTTTCAGCCTCTCTACATCTTATGCTCTCAAGAGCATCATGCAGATGGTTCAAACCATCTGCATATCCTTCTTCAGACTGATAAGACCATGTACACTCGAAATCCTCATTACTTCGATATTTGTGGTCACCATCCCAATATACAACCAGCTAAAAGCCCTGACAACGTCCGTGCATACATTCTCAAGGACCCTATCACGTCTTTCGAGGAGGGGTCATTTCAACCACGTGGGTCAAGATCCAATACTTCCGCAATACCACGCTCTGGGAATTCCGGTACCAAGGACTCCCTGATGAGGGACATCATCAATACCTCAACGAGTAAGGACGACTACCTTACTCGTGTGAGGAATACATTCCCATTTGATTGGGCCACACGTTTGCAGCAGTTTGAATACAGTGCATCCAAGTTATTCCCAGAACCGGTCCGTGAATACGTTAATCCATTTCCTCCTTCGGAACCCGACTTATTTTGCAGGGAAATCATTGACAGGTGGGTCTATGACGAACTTGATATGGATATCACCGACGCATTTGACGCCGCACAACGCCGACGGAGCCTGTACATCGTTGGACCTACAAGAACTGGTAAATCTACGTGGGCTAGGAGCCTCGGACGACACAATTACTGGCAACACATGGTGGACTTCACAGCGTATGATACCCTCGCCAAATACAACATTCTCGATGATGTACCCTTCAAATTCTGTCCAAATTGGAAACAACTCGTCGGCTGTCAGAGGGACTTCATCGTCAACCCTAAGTACGCGAAACGCAAAGAGATCCCGGGAGGAATCCCATGCATAATACTTCAGAACCCTGACGATGACTGGCTCCCGGTTCTTAGTCCATCCCAGATGGACTACTTTGTGAACAACTGTGATGTCTACGTGATGAAGCCTGGTGAAAAATTCTTCGGAGGTGATACTCCTGTGCCTGAGGCACAGGAGGATGTCCCTGACGGGACAGGGTCGTCCTAG
Protein Sequence MSTDSSNQGIAAQRLSPGLEEFTTSWPDPRAGSTSQPRVFQFKAQNIFLTYPRCDISVDVAARTLLTLCHRFQPLYILCSQEHHADGSNHLHILLQTDKTMYTRNPHYFDICGHHPNIQPAKSPDNVRAYILKDPITSFEEGSFQPRGSRSNTSAIPRSGNSGTKDSLMRDIINTSTSKDDYLTRVRNTFPFDWATRLQQFEYSASKLFPEPVREYVNPFPPSEPDLFCREIIDRWVYDELDMDITDAFDAAQRRRSLYIVGPTRTGKSTWARSLGRHNYWQHMVDFTAYDTLAKYNILDDVPFKFCPNWKQLVGCQRDFIVNPKYAKRKEIPGGIPCIILQNPDDDWLPVLSPSQMDYFVNNCDVYVMKPGEKFFGGDTPVPEAQEDVPDGTGSS

NCBI Accession YP_009026389.1
Location 1930-2724
Protein Name RepA
Coding Region ATGAGTACGGATAGTAGCAACCAGGGAATAGCCGCTCAGCGACTAAGTCCTGGCTTAGAGGAGTTCACCACTAGTTGGCCTGATCCTAGAGCAGGATCAACTTCCCAGCCAAGAGTCTTTCAATTCAAAGCCCAGAATATTTTTCTTACATATCCAAGGTGCGACATATCTGTAGATGTCGCGGCACGCACTCTCCTTACTCTTTGCCATAGGTTTCAGCCTCTCTACATCTTATGCTCTCAAGAGCATCATGCAGATGGTTCAAACCATCTGCATATCCTTCTTCAGACTGATAAGACCATGTACACTCGAAATCCTCATTACTTCGATATTTGTGGTCACCATCCCAATATACAACCAGCTAAAAGCCCTGACAACGTCCGTGCATACATTCTCAAGGACCCTATCACGTCTTTCGAGGAGGGGTCATTTCAACCACGTGGGTCAAGATCCAATACTTCCGCAATACCACGCTCTGGGAATTCCGGTACCAAGGACTCCCTGATGAGGGACATCATCAATACCTCAACGAGTAAGGACGACTACCTTACTCGTGTGAGGAATACATTCCCATTTGATTGGGCCACACGTTTGCAGCAGTTTGAATACAGTGCATCCAAGTTATTCCCAGAACCGGTCCGTGAATACGTTAATCCATTTCCTCCTTCGGAACCCGACTTATTTTGCAGGGAAATCATTGACAGGTGGGTCTATGACGAACTTGATATGGTAAGTTCTGATTCCGGTTCTATTCATTTTCGTTACGCAATATACTTATCACTATATTCATTGTAG
Protein Sequence MSTDSSNQGIAAQRLSPGLEEFTTSWPDPRAGSTSQPRVFQFKAQNIFLTYPRCDISVDVAARTLLTLCHRFQPLYILCSQEHHADGSNHLHILLQTDKTMYTRNPHYFDICGHHPNIQPAKSPDNVRAYILKDPITSFEEGSFQPRGSRSNTSAIPRSGNSGTKDSLMRDIINTSTSKDDYLTRVRNTFPFDWATRLQQFEYSASKLFPEPVREYVNPFPPSEPDLFCREIIDRWVYDELDMVSSDSGSIHFRYAIYLSLYSL

References More References in PubMed

1

Maize streak virus: an old and complex 'emerging' pathogen.

Shepherd DN, et al.  Mol Plant Pathol. 2010 Jan;11(1):1-12. doi: 10.1111/j.1364-3703.2009.00568.x.

PMID: 20078771
2

Occurrence of a novel mastrevirus in sugarcane germplasm collections in Florida, Guadeloupe and Réunion.

Boukari W, et al.  Virol J. 2017 Jul 28;14(1):146. doi: 10.1186/s12985-017-0810-9.

PMID: 28754134
3

Appearances can be deceptive: revealing a hidden viral infection with deep sequencing in a plant quarantine context.

Candresse T, et al.  PLoS One. 2014 Jul 25;9(7):e102945. doi: 10.1371/journal.pone.0102945. eCollection 2014.

PMID: 25061967
4

Purification, properties, and diagnosis of banana bract mosaic potyvirus and its distinction from abaca mosaic potyvirus.

Thomas JE, et al.  Phytopathology. 1997 Jul;87(7):698-705. doi: 10.1094/PHYTO.1997.87.7.698.

PMID: 18945091