Sugarcane striate virus

Basic Information

Genus Mastrevirus
NCBI Assembly GCF_002237255.1
Isolate USA
Release date 2017/7/29
Submitter Wardatou,B., Roumagnac,P., Filloux,D., Alcala-Briseno,R.I., Kraberger,S., Fernandez,E., Daugrois,J.-H., Martin,D.P., Lett,J.-M., Comstock,J.C., Varsani,A., Polston,J.E., Rott,P.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_035179
ATGTCTCCACAAGAAGCATTTCAGGTATCAGGGGGAACCCTACCTTTGGTCCTATCTCCGCCGCCGGCGGACCCGCCGGCTACCCCGTGGTTCAAGCTTATCTTTGGGTTAACAGTCTGTCTATGTGTTGTAGGGTCGATATATCTGACATATCGTTGGTTCCTACGGGATGTCATCATCTTGATTAGAGCGAAGAGACAGCGCACCACGGAGGAGATAGGGTTTGGGAATACCCCCCATAGGCCTGGATCTACTGCTAGCCAAGTGGTCGGCACAGGACCCGGAGGGTGAGGGTTCATCGTGGTCAGGTAATTACAAGGATTTCAGGAGGGCGTTGGCCATGTCGTCTCGCGGACCTAGTAGAAAACGGCCACGTTCTTCTACTCGAGTTGTTAAGTGGCCTTCAGAGGCGCTTAGGAAGGGGTATACGCCTTACAATTCATACCTTCGGGGTACTAAATCGGGTCGCTCAGATAAGAGACCTAATCTGCAGGTGCAGACTTTTTATGCCTGTGGACCAACACAGGTGCAGGTGAAGAAAGGTGGAATTGTTAATCTATTAAATGGTTACACCCGAGGCTCTGATGACAATCAGAGGCACACGTGCGAGACTATAACGTACAAATTGTCGCTGGATTTGCATATAAATATTGCTACTGATTTGTTCAAAAATTGTGCAAGAGGAACAGGTGTCATATGGTTGATTTATGACACTTCCCCTACAGGAACGCAGTTGACGACTCAGCAGATCTTCGCTTATCCGGATGCGCTGTCGTTGTATCCGTATACGTGGAAGGTGGCGAGGGATCAGTGTCATCGATTCATCATCAAGAGGAGATGGACTTTCAGGTTGGAAAGTAATGGGACTTTGGGTTCTTCTGATTATAGTTCGAAGCCTATTGCTCCCTGCAATAATAATGTGTATTTTTCGAAGTTCGTAAAGCGTCTCGGGGTCCGAACTGAATGGAAAAATACGACAGGAGGCGACGCTGGAGATATGAAATCCGGAGGATTATTTCTAGCGTTTGCTGCTGGCAACGGAATGTTGTTTAATGTAGACGGCACTACCAGATTGTATTTCAAGAGTACTGGAAATCAATAAAGAGATATATGATTACAATACAGATAAACGCAGTTTATTCAATATACGTTTGGAAGGTCCGGCTTCTGGGGGAAATACAATATAGGGGGGACAGGACAAAGCAGGCGGCATAGGGCGCGCAAGGGGCAACATATTAAAAAAAAACTGACAATAGTAACTATTATGACTGGCCGAATGGAGTGAAGAACTTCTCCGAAGCTTGCATCCTGTAGACAACGCAGTTGGCGTTGAAGTAGTCCTTCTGGTCTTCTGTCATCTTCTGTAGCCAGTCTTCGTCGTAGTTACAAAGGATTATACTAGGTATGCCGCCTTTAATGCGACGCTTACGACAATACTTTGGATTTACAGTGAAGTCGATTTGACAACCGACCAATTGTTTCCAACAAGGACAGAATTTAAATGGAATATCATCTATTACATTATAATCAGCAGCTATATCATAGCTGCTAAAATCAATATTGTTCTGCCAATAATTATGAGTACCTAGGCTTCTGGCCCAGGTTGTCTTTCCTGTCCTTGAAGGTCCAACGATGTAGAGGCTCTGTTTCCGATAGTGGAAGACCTCAGGGTCCTGGCATGATCGGCCATCCACTGAAGGTCAGATGTTGCCTCTTCTATGCTCGTACAATGATGATTGGCCAACATGTAGGTGTACGGAGTTACCTGGAAGAGATTGTCGTGTTGCCACTCGTCGAGAACTTCTCGACAGATTAGATCGGGTTCAGTCTCAGGGAAATCATTATTGAAGGGCTCTGGCACTGGAGGAAATAGGTAGTTTGCACTATACTCGAATTGGCTAAGATGCTTAGCCCATTCGAAGGGGAATGATTTCTGAATCATTCTTAGGTAGTCCTCTTTAGAGGTGGCAGTTCTGAAGATTTCTTTCATTATGGCGTCCTTGGAACCGGAACCCCGATCACCGGGGTTCCTTGTGTTCCCTCGCCTTGGTTGGAAAGTTCCTCTCTCAACATGTGATATTGGATCCTTAAGGATATAATCTCTAGTGTTATCAGGACTGCGTGCAGCTTGAATATTAGGATGATATTGGTTATCAAGATCAAAGAAAGCAGGATCACGGGTAGTGATCCTGCCCAGAGTCTGAATAAGACAATGAAGGTGTATACCACCGTCCTGGTGATTTTCGGCGCTAACAAGAGCGTAAATAGGACTCCAGCGAAATACATAGGAGCCCACAGGGAGATCGAGGACATACTCACAGTCGAGCGCGCAGCGCGGGTAAGTGAGAAAGGCGTTGCAGCTCCGGAATTCGAAGTTCCTCTTCCACGTGGTTTGGTGGGTGTGGATTGGCTCTGAAGGACTGTCTGAGCTCTCCTGTGTGCCACTCTGGAAGGCATCTTCGGTAGTTGCGGGGGTAGTCATGAACTCTACTCTTCTTACCGCATTTGCGTTCGTGCGCATATATGGGCCGGGCTTTTATAGTCGACGCCCCGGCCTTCCGGTCCATCACTGGGCAAATGCGTAATAATATTACAGCATTTGCCCAGCGAGGCGGGCGATAGCCCGCCGAGCGAAATTTCCACTACGTTAAAGTTGACAGCGACTAAAGTGCTTTGCGCACTGAGTGCTTTTTTCAGTGCGTTCACATTGCTGTCGCCCTTTATATACAGACGCGACGCGGTTAGATGT

Gene Information

NCBI Accession YP_009389274.1
Location 1-291
Protein Name movement protein
Coding Region ATGTCTCCACAAGAAGCATTTCAGGTATCAGGGGGAACCCTACCTTTGGTCCTATCTCCGCCGCCGGCGGACCCGCCGGCTACCCCGTGGTTCAAGCTTATCTTTGGGTTAACAGTCTGTCTATGTGTTGTAGGGTCGATATATCTGACATATCGTTGGTTCCTACGGGATGTCATCATCTTGATTAGAGCGAAGAGACAGCGCACCACGGAGGAGATAGGGTTTGGGAATACCCCCCATAGGCCTGGATCTACTGCTAGCCAAGTGGTCGGCACAGGACCCGGAGGGTGA
Protein Sequence MSPQEAFQVSGGTLPLVLSPPPADPPATPWFKLIFGLTVCLCVVGSIYLTYRWFLRDVIILIRAKRQRTTEEIGFGNTPHRPGSTASQVVGTGPGG

NCBI Accession YP_009389275.1
Location 341-1102
Protein Name capsid protein
Coding Region ATGTCGTCTCGCGGACCTAGTAGAAAACGGCCACGTTCTTCTACTCGAGTTGTTAAGTGGCCTTCAGAGGCGCTTAGGAAGGGGTATACGCCTTACAATTCATACCTTCGGGGTACTAAATCGGGTCGCTCAGATAAGAGACCTAATCTGCAGGTGCAGACTTTTTATGCCTGTGGACCAACACAGGTGCAGGTGAAGAAAGGTGGAATTGTTAATCTATTAAATGGTTACACCCGAGGCTCTGATGACAATCAGAGGCACACGTGCGAGACTATAACGTACAAATTGTCGCTGGATTTGCATATAAATATTGCTACTGATTTGTTCAAAAATTGTGCAAGAGGAACAGGTGTCATATGGTTGATTTATGACACTTCCCCTACAGGAACGCAGTTGACGACTCAGCAGATCTTCGCTTATCCGGATGCGCTGTCGTTGTATCCGTATACGTGGAAGGTGGCGAGGGATCAGTGTCATCGATTCATCATCAAGAGGAGATGGACTTTCAGGTTGGAAAGTAATGGGACTTTGGGTTCTTCTGATTATAGTTCGAAGCCTATTGCTCCCTGCAATAATAATGTGTATTTTTCGAAGTTCGTAAAGCGTCTCGGGGTCCGAACTGAATGGAAAAATACGACAGGAGGCGACGCTGGAGATATGAAATCCGGAGGATTATTTCTAGCGTTTGCTGCTGGCAACGGAATGTTGTTTAATGTAGACGGCACTACCAGATTGTATTTCAAGAGTACTGGAAATCAATAA
Protein Sequence MSSRGPSRKRPRSSTRVVKWPSEALRKGYTPYNSYLRGTKSGRSDKRPNLQVQTFYACGPTQVQVKKGGIVNLLNGYTRGSDDNQRHTCETITYKLSLDLHINIATDLFKNCARGTGVIWLIYDTSPTGTQLTTQQIFAYPDALSLYPYTWKVARDQCHRFIIKRRWTFRLESNGTLGSSDYSSKPIAPCNNNVYFSKFVKRLGVRTEWKNTTGGDAGDMKSGGLFLAFAAGNGMLFNVDGTTRLYFKSTGNQ

NCBI Accession YP_009389276.1
Location 1263-1673,1766-2521
Protein Name replication associated protein
Coding Region ATGCGCACGAACGCAAATGCGGTAAGAAGAGTAGAGTTCATGACTACCCCCGCAACTACCGAAGATGCCTTCCAGAGTGGCACACAGGAGAGCTCAGACAGTCCTTCAGAGCCAATCCACACCCACCAAACCACGTGGAAGAGGAACTTCGAATTCCGGAGCTGCAACGCCTTTCTCACTTACCCGCGCTGCGCGCTCGACTGTGAGTATGTCCTCGATCTCCCTGTGGGCTCCTATGTATTTCGCTGGAGTCCTATTTACGCTCTTGTTAGCGCCGAAAATCACCAGGACGGTGGTATACACCTTCATTGTCTTATTCAGACTCTGGGCAGGATCACTACCCGTGATCCTGCTTTCTTTGATCTTGATAACCAATATCATCCTAATATTCAAGCTGCACGCAGTCCTGATAACACTAGAGATTATATCCTTAAGGATCCAATATCACATGTTGAGAGAGGAACTTTCCAACCAAGGCGAGGGAACACAAGGAACCCCGGTGATCGGGGTTCCGGTTCCAAGGACGCCATAATGAAAGAAATCTTCAGAACTGCCACCTCTAAAGAGGACTACCTAAGAATGATTCAGAAATCATTCCCCTTCGAATGGGCTAAGCATCTTAGCCAATTCGAGTATAGTGCAAACTACCTATTTCCTCCAGTGCCAGAGCCCTTCAATAATGATTTCCCTGAGACTGAACCCGATCTAATCTGTCGAGAAGTTCTCGACGAGTGGCAACACGACAATCTCTTCCAGGACCCTGAGGTCTTCCACTATCGGAAACAGAGCCTCTACATCGTTGGACCTTCAAGGACAGGAAAGACAACCTGGGCCAGAAGCCTAGGTACTCATAATTATTGGCAGAACAATATTGATTTTAGCAGCTATGATATAGCTGCTGATTATAATGTAATAGATGATATTCCATTTAAATTCTGTCCTTGTTGGAAACAATTGGTCGGTTGTCAAATCGACTTCACTGTAAATCCAAAGTATTGTCGTAAGCGTCGCATTAAAGGCGGCATACCTAGTATAATCCTTTGTAACTACGACGAAGACTGGCTACAGAAGATGACAGAAGACCAGAAGGACTACTTCAACGCCAACTGCGTTGTCTACAGGATGCAAGCTTCGGAGAAGTTCTTCACTCCATTCGGCCAGTCATAA
Protein Sequence MRTNANAVRRVEFMTTPATTEDAFQSGTQESSDSPSEPIHTHQTTWKRNFEFRSCNAFLTYPRCALDCEYVLDLPVGSYVFRWSPIYALVSAENHQDGGIHLHCLIQTLGRITTRDPAFFDLDNQYHPNIQAARSPDNTRDYILKDPISHVERGTFQPRRGNTRNPGDRGSGSKDAIMKEIFRTATSKEDYLRMIQKSFPFEWAKHLSQFEYSANYLFPPVPEPFNNDFPETEPDLICREVLDEWQHDNLFQDPEVFHYRKQSLYIVGPSRTGKTTWARSLGTHNYWQNNIDFSSYDIAADYNVIDDIPFKFCPCWKQLVGCQIDFTVNPKYCRKRRIKGGIPSIILCNYDEDWLQKMTEDQKDYFNANCVVYRMQASEKFFTPFGQS

NCBI Accession YP_009389277.1
Location 1586-2521
Protein Name RepA
Coding Region ATGCGCACGAACGCAAATGCGGTAAGAAGAGTAGAGTTCATGACTACCCCCGCAACTACCGAAGATGCCTTCCAGAGTGGCACACAGGAGAGCTCAGACAGTCCTTCAGAGCCAATCCACACCCACCAAACCACGTGGAAGAGGAACTTCGAATTCCGGAGCTGCAACGCCTTTCTCACTTACCCGCGCTGCGCGCTCGACTGTGAGTATGTCCTCGATCTCCCTGTGGGCTCCTATGTATTTCGCTGGAGTCCTATTTACGCTCTTGTTAGCGCCGAAAATCACCAGGACGGTGGTATACACCTTCATTGTCTTATTCAGACTCTGGGCAGGATCACTACCCGTGATCCTGCTTTCTTTGATCTTGATAACCAATATCATCCTAATATTCAAGCTGCACGCAGTCCTGATAACACTAGAGATTATATCCTTAAGGATCCAATATCACATGTTGAGAGAGGAACTTTCCAACCAAGGCGAGGGAACACAAGGAACCCCGGTGATCGGGGTTCCGGTTCCAAGGACGCCATAATGAAAGAAATCTTCAGAACTGCCACCTCTAAAGAGGACTACCTAAGAATGATTCAGAAATCATTCCCCTTCGAATGGGCTAAGCATCTTAGCCAATTCGAGTATAGTGCAAACTACCTATTTCCTCCAGTGCCAGAGCCCTTCAATAATGATTTCCCTGAGACTGAACCCGATCTAATCTGTCGAGAAGTTCTCGACGAGTGGCAACACGACAATCTCTTCCAGGTAACTCCGTACACCTACATGTTGGCCAATCATCATTGTACGAGCATAGAAGAGGCAACATCTGACCTTCAGTGGATGGCCGATCATGCCAGGACCCTGAGGTCTTCCACTATCGGAAACAGAGCCTCTACATCGTTGGACCTTCAAGGACAGGAAAGACAACCTGGGCCAGAAGCCTAG
Protein Sequence MRTNANAVRRVEFMTTPATTEDAFQSGTQESSDSPSEPIHTHQTTWKRNFEFRSCNAFLTYPRCALDCEYVLDLPVGSYVFRWSPIYALVSAENHQDGGIHLHCLIQTLGRITTRDPAFFDLDNQYHPNIQAARSPDNTRDYILKDPISHVERGTFQPRRGNTRNPGDRGSGSKDAIMKEIFRTATSKEDYLRMIQKSFPFEWAKHLSQFEYSANYLFPPVPEPFNNDFPETEPDLICREVLDEWQHDNLFQVTPYTYMLANHHCTSIEEATSDLQWMADHARTLRSSTIGNRASTSLDLQGQERQPGPEA

References More References in PubMed

1

Incidence, Geographical Distribution, and Genetic Diversity of Sugarcane Striate Virus in Saccharum Species in China.

Lin Y, et al.  Plant Dis. 2021 Nov;105(11):3531-3537. doi: 10.1094/PDIS-10-20-2307-RE. Epub 2021 Nov 18.

PMID: 34042497
2

Identification of sugarcane striate mosaic-associated virus by partial characterization of its double-stranded RNA.

Choi YG, et al.  Phytopathology. 1999 Oct;89(10):877-83. doi: 10.1094/PHYTO.1999.89.10.877.

PMID: 18944730
3

Viral Metagenomic-Based Screening of Sugarcane from Florida Reveals Occurrence of Six Sugarcane-Infecting Viruses and High Prevalence of Sugarcane yellow leaf virus.

Filloux D, et al.  Plant Dis. 2018 Nov;102(11):2317-2323. doi: 10.1094/PDIS-04-18-0581-RE. Epub 2018 Sep 10.

PMID: 30207899
4

The genome organisation and taxonomy of Sugarcane striate mosaic associated virus.

Thompson N, et al.  Arch Virol. 2001 Aug;146(8):1441-51. doi: 10.1007/s007050170070.

PMID: 11676409
5

Occurrence of a novel mastrevirus in sugarcane germplasm collections in Florida, Guadeloupe and Reunion.

Boukari W, et al.  Virol J. 2017 Jul 28;14(1):146. doi: 10.1186/s12985-017-0810-9.

PMID: 28754134
6

Characterization of the sugarcane streak agent as a distinct geminivirus.

Hughes FL, et al.  Intervirology. 1991;32(1):19-27. doi: 10.1159/000150181.

PMID: 2016148