Sugarcane striate virus
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_002237255.1 |
| Isolate |
USA |
| Release date |
2017/7/29 |
| Submitter |
Wardatou,B., Roumagnac,P., Filloux,D., Alcala-Briseno,R.I., Kraberger,S., Fernandez,E., Daugrois,J.-H., Martin,D.P., Lett,J.-M., Comstock,J.C., Varsani,A., Polston,J.E., Rott,P. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ATGTCTCCACAAGAAGCATTTCAGGTATCAGGGGGAACCCTACCTTTGGTCCTATCTCCGCCGCCGGCGGACCCGCCGGCTACCCCGTGGTTCAAGCTTATCTTTGGGTTAACAGTCTGTCTATGTGTTGTAGGGTCGATATATCTGACATATCGTTGGTTCCTACGGGATGTCATCATCTTGATTAGAGCGAAGAGACAGCGCACCACGGAGGAGATAGGGTTTGGGAATACCCCCCATAGGCCTGGATCTACTGCTAGCCAAGTGGTCGGCACAGGACCCGGAGGGTGAGGGTTCATCGTGGTCAGGTAATTACAAGGATTTCAGGAGGGCGTTGGCCATGTCGTCTCGCGGACCTAGTAGAAAACGGCCACGTTCTTCTACTCGAGTTGTTAAGTGGCCTTCAGAGGCGCTTAGGAAGGGGTATACGCCTTACAATTCATACCTTCGGGGTACTAAATCGGGTCGCTCAGATAAGAGACCTAATCTGCAGGTGCAGACTTTTTATGCCTGTGGACCAACACAGGTGCAGGTGAAGAAAGGTGGAATTGTTAATCTATTAAATGGTTACACCCGAGGCTCTGATGACAATCAGAGGCACACGTGCGAGACTATAACGTACAAATTGTCGCTGGATTTGCATATAAATATTGCTACTGATTTGTTCAAAAATTGTGCAAGAGGAACAGGTGTCATATGGTTGATTTATGACACTTCCCCTACAGGAACGCAGTTGACGACTCAGCAGATCTTCGCTTATCCGGATGCGCTGTCGTTGTATCCGTATACGTGGAAGGTGGCGAGGGATCAGTGTCATCGATTCATCATCAAGAGGAGATGGACTTTCAGGTTGGAAAGTAATGGGACTTTGGGTTCTTCTGATTATAGTTCGAAGCCTATTGCTCCCTGCAATAATAATGTGTATTTTTCGAAGTTCGTAAAGCGTCTCGGGGTCCGAACTGAATGGAAAAATACGACAGGAGGCGACGCTGGAGATATGAAATCCGGAGGATTATTTCTAGCGTTTGCTGCTGGCAACGGAATGTTGTTTAATGTAGACGGCACTACCAGATTGTATTTCAAGAGTACTGGAAATCAATAAAGAGATATATGATTACAATACAGATAAACGCAGTTTATTCAATATACGTTTGGAAGGTCCGGCTTCTGGGGGAAATACAATATAGGGGGGACAGGACAAAGCAGGCGGCATAGGGCGCGCAAGGGGCAACATATTAAAAAAAAACTGACAATAGTAACTATTATGACTGGCCGAATGGAGTGAAGAACTTCTCCGAAGCTTGCATCCTGTAGACAACGCAGTTGGCGTTGAAGTAGTCCTTCTGGTCTTCTGTCATCTTCTGTAGCCAGTCTTCGTCGTAGTTACAAAGGATTATACTAGGTATGCCGCCTTTAATGCGACGCTTACGACAATACTTTGGATTTACAGTGAAGTCGATTTGACAACCGACCAATTGTTTCCAACAAGGACAGAATTTAAATGGAATATCATCTATTACATTATAATCAGCAGCTATATCATAGCTGCTAAAATCAATATTGTTCTGCCAATAATTATGAGTACCTAGGCTTCTGGCCCAGGTTGTCTTTCCTGTCCTTGAAGGTCCAACGATGTAGAGGCTCTGTTTCCGATAGTGGAAGACCTCAGGGTCCTGGCATGATCGGCCATCCACTGAAGGTCAGATGTTGCCTCTTCTATGCTCGTACAATGATGATTGGCCAACATGTAGGTGTACGGAGTTACCTGGAAGAGATTGTCGTGTTGCCACTCGTCGAGAACTTCTCGACAGATTAGATCGGGTTCAGTCTCAGGGAAATCATTATTGAAGGGCTCTGGCACTGGAGGAAATAGGTAGTTTGCACTATACTCGAATTGGCTAAGATGCTTAGCCCATTCGAAGGGGAATGATTTCTGAATCATTCTTAGGTAGTCCTCTTTAGAGGTGGCAGTTCTGAAGATTTCTTTCATTATGGCGTCCTTGGAACCGGAACCCCGATCACCGGGGTTCCTTGTGTTCCCTCGCCTTGGTTGGAAAGTTCCTCTCTCAACATGTGATATTGGATCCTTAAGGATATAATCTCTAGTGTTATCAGGACTGCGTGCAGCTTGAATATTAGGATGATATTGGTTATCAAGATCAAAGAAAGCAGGATCACGGGTAGTGATCCTGCCCAGAGTCTGAATAAGACAATGAAGGTGTATACCACCGTCCTGGTGATTTTCGGCGCTAACAAGAGCGTAAATAGGACTCCAGCGAAATACATAGGAGCCCACAGGGAGATCGAGGACATACTCACAGTCGAGCGCGCAGCGCGGGTAAGTGAGAAAGGCGTTGCAGCTCCGGAATTCGAAGTTCCTCTTCCACGTGGTTTGGTGGGTGTGGATTGGCTCTGAAGGACTGTCTGAGCTCTCCTGTGTGCCACTCTGGAAGGCATCTTCGGTAGTTGCGGGGGTAGTCATGAACTCTACTCTTCTTACCGCATTTGCGTTCGTGCGCATATATGGGCCGGGCTTTTATAGTCGACGCCCCGGCCTTCCGGTCCATCACTGGGCAAATGCGTAATAATATTACAGCATTTGCCCAGCGAGGCGGGCGATAGCCCGCCGAGCGAAATTTCCACTACGTTAAAGTTGACAGCGACTAAAGTGCTTTGCGCACTGAGTGCTTTTTTCAGTGCGTTCACATTGCTGTCGCCCTTTATATACAGACGCGACGCGGTTAGATGT
Gene Information
|
NCBI Accession
|
YP_009389274.1
|
|
Location
|
1-291 |
|
Protein Name
|
movement protein |
|
Coding Region
|
ATGTCTCCACAAGAAGCATTTCAGGTATCAGGGGGAACCCTACCTTTGGTCCTATCTCCGCCGCCGGCGGACCCGCCGGCTACCCCGTGGTTCAAGCTTATCTTTGGGTTAACAGTCTGTCTATGTGTTGTAGGGTCGATATATCTGACATATCGTTGGTTCCTACGGGATGTCATCATCTTGATTAGAGCGAAGAGACAGCGCACCACGGAGGAGATAGGGTTTGGGAATACCCCCCATAGGCCTGGATCTACTGCTAGCCAAGTGGTCGGCACAGGACCCGGAGGGTGA |
|
Protein Sequence
|
MSPQEAFQVSGGTLPLVLSPPPADPPATPWFKLIFGLTVCLCVVGSIYLTYRWFLRDVIILIRAKRQRTTEEIGFGNTPHRPGSTASQVVGTGPGG |
|
NCBI Accession
|
YP_009389275.1
|
|
Location
|
341-1102 |
|
Protein Name
|
capsid protein |
|
Coding Region
|
ATGTCGTCTCGCGGACCTAGTAGAAAACGGCCACGTTCTTCTACTCGAGTTGTTAAGTGGCCTTCAGAGGCGCTTAGGAAGGGGTATACGCCTTACAATTCATACCTTCGGGGTACTAAATCGGGTCGCTCAGATAAGAGACCTAATCTGCAGGTGCAGACTTTTTATGCCTGTGGACCAACACAGGTGCAGGTGAAGAAAGGTGGAATTGTTAATCTATTAAATGGTTACACCCGAGGCTCTGATGACAATCAGAGGCACACGTGCGAGACTATAACGTACAAATTGTCGCTGGATTTGCATATAAATATTGCTACTGATTTGTTCAAAAATTGTGCAAGAGGAACAGGTGTCATATGGTTGATTTATGACACTTCCCCTACAGGAACGCAGTTGACGACTCAGCAGATCTTCGCTTATCCGGATGCGCTGTCGTTGTATCCGTATACGTGGAAGGTGGCGAGGGATCAGTGTCATCGATTCATCATCAAGAGGAGATGGACTTTCAGGTTGGAAAGTAATGGGACTTTGGGTTCTTCTGATTATAGTTCGAAGCCTATTGCTCCCTGCAATAATAATGTGTATTTTTCGAAGTTCGTAAAGCGTCTCGGGGTCCGAACTGAATGGAAAAATACGACAGGAGGCGACGCTGGAGATATGAAATCCGGAGGATTATTTCTAGCGTTTGCTGCTGGCAACGGAATGTTGTTTAATGTAGACGGCACTACCAGATTGTATTTCAAGAGTACTGGAAATCAATAA |
|
Protein Sequence
|
MSSRGPSRKRPRSSTRVVKWPSEALRKGYTPYNSYLRGTKSGRSDKRPNLQVQTFYACGPTQVQVKKGGIVNLLNGYTRGSDDNQRHTCETITYKLSLDLHINIATDLFKNCARGTGVIWLIYDTSPTGTQLTTQQIFAYPDALSLYPYTWKVARDQCHRFIIKRRWTFRLESNGTLGSSDYSSKPIAPCNNNVYFSKFVKRLGVRTEWKNTTGGDAGDMKSGGLFLAFAAGNGMLFNVDGTTRLYFKSTGNQ |
|
NCBI Accession
|
YP_009389276.1
|
|
Location
|
1263-1673,1766-2521 |
|
Protein Name
|
replication associated protein |
|
Coding Region
|
ATGCGCACGAACGCAAATGCGGTAAGAAGAGTAGAGTTCATGACTACCCCCGCAACTACCGAAGATGCCTTCCAGAGTGGCACACAGGAGAGCTCAGACAGTCCTTCAGAGCCAATCCACACCCACCAAACCACGTGGAAGAGGAACTTCGAATTCCGGAGCTGCAACGCCTTTCTCACTTACCCGCGCTGCGCGCTCGACTGTGAGTATGTCCTCGATCTCCCTGTGGGCTCCTATGTATTTCGCTGGAGTCCTATTTACGCTCTTGTTAGCGCCGAAAATCACCAGGACGGTGGTATACACCTTCATTGTCTTATTCAGACTCTGGGCAGGATCACTACCCGTGATCCTGCTTTCTTTGATCTTGATAACCAATATCATCCTAATATTCAAGCTGCACGCAGTCCTGATAACACTAGAGATTATATCCTTAAGGATCCAATATCACATGTTGAGAGAGGAACTTTCCAACCAAGGCGAGGGAACACAAGGAACCCCGGTGATCGGGGTTCCGGTTCCAAGGACGCCATAATGAAAGAAATCTTCAGAACTGCCACCTCTAAAGAGGACTACCTAAGAATGATTCAGAAATCATTCCCCTTCGAATGGGCTAAGCATCTTAGCCAATTCGAGTATAGTGCAAACTACCTATTTCCTCCAGTGCCAGAGCCCTTCAATAATGATTTCCCTGAGACTGAACCCGATCTAATCTGTCGAGAAGTTCTCGACGAGTGGCAACACGACAATCTCTTCCAGGACCCTGAGGTCTTCCACTATCGGAAACAGAGCCTCTACATCGTTGGACCTTCAAGGACAGGAAAGACAACCTGGGCCAGAAGCCTAGGTACTCATAATTATTGGCAGAACAATATTGATTTTAGCAGCTATGATATAGCTGCTGATTATAATGTAATAGATGATATTCCATTTAAATTCTGTCCTTGTTGGAAACAATTGGTCGGTTGTCAAATCGACTTCACTGTAAATCCAAAGTATTGTCGTAAGCGTCGCATTAAAGGCGGCATACCTAGTATAATCCTTTGTAACTACGACGAAGACTGGCTACAGAAGATGACAGAAGACCAGAAGGACTACTTCAACGCCAACTGCGTTGTCTACAGGATGCAAGCTTCGGAGAAGTTCTTCACTCCATTCGGCCAGTCATAA |
|
Protein Sequence
|
MRTNANAVRRVEFMTTPATTEDAFQSGTQESSDSPSEPIHTHQTTWKRNFEFRSCNAFLTYPRCALDCEYVLDLPVGSYVFRWSPIYALVSAENHQDGGIHLHCLIQTLGRITTRDPAFFDLDNQYHPNIQAARSPDNTRDYILKDPISHVERGTFQPRRGNTRNPGDRGSGSKDAIMKEIFRTATSKEDYLRMIQKSFPFEWAKHLSQFEYSANYLFPPVPEPFNNDFPETEPDLICREVLDEWQHDNLFQDPEVFHYRKQSLYIVGPSRTGKTTWARSLGTHNYWQNNIDFSSYDIAADYNVIDDIPFKFCPCWKQLVGCQIDFTVNPKYCRKRRIKGGIPSIILCNYDEDWLQKMTEDQKDYFNANCVVYRMQASEKFFTPFGQS |
|
NCBI Accession
|
YP_009389277.1
|
|
Location
|
1586-2521 |
|
Protein Name
|
RepA |
|
Coding Region
|
ATGCGCACGAACGCAAATGCGGTAAGAAGAGTAGAGTTCATGACTACCCCCGCAACTACCGAAGATGCCTTCCAGAGTGGCACACAGGAGAGCTCAGACAGTCCTTCAGAGCCAATCCACACCCACCAAACCACGTGGAAGAGGAACTTCGAATTCCGGAGCTGCAACGCCTTTCTCACTTACCCGCGCTGCGCGCTCGACTGTGAGTATGTCCTCGATCTCCCTGTGGGCTCCTATGTATTTCGCTGGAGTCCTATTTACGCTCTTGTTAGCGCCGAAAATCACCAGGACGGTGGTATACACCTTCATTGTCTTATTCAGACTCTGGGCAGGATCACTACCCGTGATCCTGCTTTCTTTGATCTTGATAACCAATATCATCCTAATATTCAAGCTGCACGCAGTCCTGATAACACTAGAGATTATATCCTTAAGGATCCAATATCACATGTTGAGAGAGGAACTTTCCAACCAAGGCGAGGGAACACAAGGAACCCCGGTGATCGGGGTTCCGGTTCCAAGGACGCCATAATGAAAGAAATCTTCAGAACTGCCACCTCTAAAGAGGACTACCTAAGAATGATTCAGAAATCATTCCCCTTCGAATGGGCTAAGCATCTTAGCCAATTCGAGTATAGTGCAAACTACCTATTTCCTCCAGTGCCAGAGCCCTTCAATAATGATTTCCCTGAGACTGAACCCGATCTAATCTGTCGAGAAGTTCTCGACGAGTGGCAACACGACAATCTCTTCCAGGTAACTCCGTACACCTACATGTTGGCCAATCATCATTGTACGAGCATAGAAGAGGCAACATCTGACCTTCAGTGGATGGCCGATCATGCCAGGACCCTGAGGTCTTCCACTATCGGAAACAGAGCCTCTACATCGTTGGACCTTCAAGGACAGGAAAGACAACCTGGGCCAGAAGCCTAG |
|
Protein Sequence
|
MRTNANAVRRVEFMTTPATTEDAFQSGTQESSDSPSEPIHTHQTTWKRNFEFRSCNAFLTYPRCALDCEYVLDLPVGSYVFRWSPIYALVSAENHQDGGIHLHCLIQTLGRITTRDPAFFDLDNQYHPNIQAARSPDNTRDYILKDPISHVERGTFQPRRGNTRNPGDRGSGSKDAIMKEIFRTATSKEDYLRMIQKSFPFEWAKHLSQFEYSANYLFPPVPEPFNNDFPETEPDLICREVLDEWQHDNLFQVTPYTYMLANHHCTSIEEATSDLQWMADHARTLRSSTIGNRASTSLDLQGQERQPGPEA |