Sugarcane streak virus


Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000840065.1
Release date 2015/2/12
Submitter Hughes,F.L.
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_003744
ATGGATAGCTTTGGCAGAGCTCCTCCTCTTTGGCCGCAGTCAGCTTTGCCTCGGGTCCCTGGTGCTGCTCCGTCGTCCTCTGGACTGCCGTGGAGCCGCGTCGGTGAGATAGCTATCTTTACCTTTGTTGCAGTATTGGCGCTTTACCTGCTCTGGAGTTGGGTGGGTAGAGATCTTCTCTTGGTTCTTAAGGCTCGCCGCGGAGGCACTACGGAGGAGCTGACATTTGGGCCCAGGGAGCGCCACAGTTTACCAGCTGTAGCTGTTGCTCGGGTGGAAAATCCTCCGTGTCCCAGTGGTTCAGTGGAAGCTAGACCGTTCACCGGTTAGCTGTGCCCTCAGCATGCCTCTCTCTGGAATGAAGCGTAAGAGGTCCGATGAGACGGGTCGCCGTAAGAGATCTTCTGGGGTGAAGCAGGGGCGTACATCTGCCGCCCGTGCTGGTTCTGCTGTTCGCAGGACTCGTCCCTCTCTGCAGATCCAGACGCTGCAGGCGGCTGGTACTTCAATGATCGAAGTGCCATCCGGTGGCGTTTGTGACCTTCTTGGTTCCTTCTCCCGTGGCTCTGACGAGGGGAACAGGCACACCAACGAGACTGTCATCTACAAGGTGGCACTGGACTACCACTTCATTGCTACCGCTGCTGCCTGCAAGTATTCATCTATTGGCACTGGCGTGGTGTGGTTGGTGTATGACGCACAGCCTTCGGGGAATCCCCCGACAGTGAAGGATATTTTCCCTCACCCTGATACTTTGACAGCGTTCCCGTACACCTGGAAGGTTGGTCGTGAAGTGTGTCATCGGTTCGTGGTGAAGCGGAGGTGGACTTTCACGATGGAAGTTAACGGGCGTATCGGTTCCGATATACCTCCTAGTACCAGCTGTTGGCCCCCGTGCCGTAAGAACATTTACTTCCACAAGTTTGTCACCGGCTTAGGTGTTAAAACGGAGTGGAAGAACACTACCGGCGGTGAAGTCGGTGACATTAAGAAGGGTGCCCTGTATATTGTAATTGCCCCTGGCAATGGGTTAGATTTTACGGTGCATGGTAATGCCCGTTTGTATTTCAAGTCAGTCGGGAACCAGTAGGTCCTGAGTTTAATAAAATTCCATTTTATTTCATGATAAGTCTAGCCTTGTCTCTGACAAGGTGGGTTACACAGGCAGCCGCTTGGCTGACAAAAACACTAAACTGATACAAACGGCGGCAGATCGTAGGCGGCTAAGGGATAGGAATATGAAAAAAAAAACACATCCAAACTGACATTATTGAAATTGGTCGGCGCTCAGACTTCGCTAGAAGGATGGGCTGTAGCTGACACCGCTGGCAGGCTGAAGAACCGCTCTCCCGGTTCTAGCATGTATGTCTCACAGTTTGCATTGAAATAGTCCTGCTGGGCAGGCGTCATGTCTCTCAACCAGTCCTCATCCTCATTGGCTAGCACTATAGTGGGGATGGATTTACTAGCTACTTTCTTACGCTTGCCGTACTTTGGATTTACAATATAATCCTTCTGGCAGCCAATCAGTTGCTTCCAGCATGGACAGTACTTGAAGGGTATGTCGTCGATGATGTTGTATTCTGCGTCCTCGTCGTAGGAGGACCAGTCGACGTTGTTCTGCCAGTAATTATGTCTTCCCAGGCTCCTGGCCCAGGAGGACTTGCCTGTTCTTGTTGGCCCGAGGATGTACAGGCTGAGCTTCCTGTTGGAATTAGAGTTCTGGATGTTTCATGCATCCATATCAGATCAGAAGTTGCTTCTTCCAGGGTTAAGCAACTGGGATTAGCTAGCATGTATGCAGAAGGACTAACCTGGTAGAGGTTGTTCTCAAGCCAGGTATTTATTGCCGTAGGATCGAGGAGTGCTGGTGTGCTTTGAGGGAAAGGACTGGTGTATATTTCCTGGATGTCAGGAAACAGTTTATTTGCCGAATACTCAAAGTATTGTAGTTTGGTGGCCCACTCGTAAGGTAGAGCTTTCTGTATCATGGAGAGGTACTCTTGCTTGTTGGTGGAATGTTCTATGATATCTCTTACGATATCATCCTTGGATTGCTTCTTGGAATTTGGCTCAGTCGAATCTCCTAGGAAGGAGGTCTTCCTAGGTATGAACGTACCTCTCTCCCAGTATGTAACCGGGTTCTTCATGGCGTATGCTCTGACCTTGTTGGCACTCTTTGCACTCTGAATGTTGGGATGGAAGCCATCAATGTCGAAGAAGCCGGAGTCAGTTGTGTAGACAGGTTTTGCACTCTGAGCGAGTACGTGGATGTGATACCCTCCGTCTTCATGTGTCTCCCTGACAGATAGGACATACACTGGTGTCCAGTGTGCAATGAGGCTCCATATGTGTAGACCTACAGCTTCAGGTTCTAATGGACAGCGAGAGTAGGTGAGGAACGTGTTCACGTTGCGGTGTTTGAAGCGACGGCTAGGAGTGGAAGACACAGTTGATCCTACGGTCGACATCTCTTTGGGCAGTGTCTGATTTGGAGCCTCAACCAACCTCCTACAGGTTTGCGATTTAGAATCACGCACTCCCCCTGCCCTCTTATAGGAGTGCTAAATGGGCTGGGCCGAATTTTTTCTTGGGCCGCAATGAAAAAGCGCAAACCAATAATATTACAGCGCTTTTTCATGCGAGGCCCACCAGGCCGACGGGTCCCGGTTCTGGGTGCGTTTTGTTCTTTATTGCCGGCTGCTTTGAAACGCCGGCTTTGGATCGCACTATAAGGGGGTTGTGTCATGTGTTCGAC

Gene Information

NCBI Accession NP_620490.1
Location 1-330
Protein Name movement protein
Coding Region ATGGATAGCTTTGGCAGAGCTCCTCCTCTTTGGCCGCAGTCAGCTTTGCCTCGGGTCCCTGGTGCTGCTCCGTCGTCCTCTGGACTGCCGTGGAGCCGCGTCGGTGAGATAGCTATCTTTACCTTTGTTGCAGTATTGGCGCTTTACCTGCTCTGGAGTTGGGTGGGTAGAGATCTTCTCTTGGTTCTTAAGGCTCGCCGCGGAGGCACTACGGAGGAGCTGACATTTGGGCCCAGGGAGCGCCACAGTTTACCAGCTGTAGCTGTTGCTCGGGTGGAAAATCCTCCGTGTCCCAGTGGTTCAGTGGAAGCTAGACCGTTCACCGGTTAG
Protein Sequence MDSFGRAPPLWPQSALPRVPGAAPSSSGLPWSRVGEIAIFTFVAVLALYLLWSWVGRDLLLVLKARRGGTTEELTFGPRERHSLPAVAVARVENPPCPSGSVEARPFTG

NCBI Accession NP_620491.1
Location 344-1090
Protein Name coat protein
Coding Region ATGCCTCTCTCTGGAATGAAGCGTAAGAGGTCCGATGAGACGGGTCGCCGTAAGAGATCTTCTGGGGTGAAGCAGGGGCGTACATCTGCCGCCCGTGCTGGTTCTGCTGTTCGCAGGACTCGTCCCTCTCTGCAGATCCAGACGCTGCAGGCGGCTGGTACTTCAATGATCGAAGTGCCATCCGGTGGCGTTTGTGACCTTCTTGGTTCCTTCTCCCGTGGCTCTGACGAGGGGAACAGGCACACCAACGAGACTGTCATCTACAAGGTGGCACTGGACTACCACTTCATTGCTACCGCTGCTGCCTGCAAGTATTCATCTATTGGCACTGGCGTGGTGTGGTTGGTGTATGACGCACAGCCTTCGGGGAATCCCCCGACAGTGAAGGATATTTTCCCTCACCCTGATACTTTGACAGCGTTCCCGTACACCTGGAAGGTTGGTCGTGAAGTGTGTCATCGGTTCGTGGTGAAGCGGAGGTGGACTTTCACGATGGAAGTTAACGGGCGTATCGGTTCCGATATACCTCCTAGTACCAGCTGTTGGCCCCCGTGCCGTAAGAACATTTACTTCCACAAGTTTGTCACCGGCTTAGGTGTTAAAACGGAGTGGAAGAACACTACCGGCGGTGAAGTCGGTGACATTAAGAAGGGTGCCCTGTATATTGTAATTGCCCCTGGCAATGGGTTAGATTTTACGGTGCATGGTAATGCCCGTTTGTATTTCAAGTCAGTCGGGAACCAGTAG
Protein Sequence MPLSGMKRKRSDETGRRKRSSGVKQGRTSAARAGSAVRRTRPSLQIQTLQAAGTSMIEVPSGGVCDLLGSFSRGSDEGNRHTNETVIYKVALDYHFIATAAACKYSSIGTGVVWLVYDAQPSGNPPTVKDIFPHPDTLTAFPYTWKVGREVCHRFVVKRRWTFTMEVNGRIGSDIPPSTSCWPPCRKNIYFHKFVTGLGVKTEWKNTTGGEVGDIKKGALYIVIAPGNGLDFTVHGNARLYFKSVGNQ

NCBI Accession NP_620492.1
Location 1527-2471
Protein Name replicase A
Coding Region ATGTCGACCGTAGGATCAACTGTGTCTTCCACTCCTAGCCGTCGCTTCAAACACCGCAACGTGAACACGTTCCTCACCTACTCTCGCTGTCCATTAGAACCTGAAGCTGTAGGTCTACACATATGGAGCCTCATTGCACACTGGACACCAGTGTATGTCCTATCTGTCAGGGAGACACATGAAGACGGAGGGTATCACATCCACGTACTCGCTCAGAGTGCAAAACCTGTCTACACAACTGACTCCGGCTTCTTCGACATTGATGGCTTCCATCCCAACATTCAGAGTGCAAAGAGTGCCAACAAGGTCAGAGCATACGCCATGAAGAACCCGGTTACATACTGGGAGAGAGGTACGTTCATACCTAGGAAGACCTCCTTCCTAGGAGATTCGACTGAGCCAAATTCCAAGAAGCAATCCAAGGATGATATCGTAAGAGATATCATAGAACATTCCACCAACAAGCAAGAGTACCTCTCCATGATACAGAAAGCTCTACCTTACGAGTGGGCCACCAAACTACAATACTTTGAGTATTCGGCAAATAAACTGTTTCCTGACATCCAGGAAATATACACCAGTCCTTTCCCTCAAAGCACACCAGCACTCCTCGATCCTACGGCAATAAATACCTGGCTTGAGAACAACCTCTACCAGGTTAGTCCTTCTGCATACATGCTAGCTAATCCCAGTTGCTTAACCCTGGAAGAAGCAACTTCTGATCTGATATGGATGCATGAAACATCCAGAACTCTAATTCCAACAGGAAGCTCAGCCTGTACATCCTCGGGCCAACAAGAACAGGCAAGTCCTCCTGGGCCAGGAGCCTGGGAAGACATAATTACTGGCAGAACAACGTCGACTGGTCCTCCTACGACGAGGACGCAGAATACAACATCATCGACGACATACCCTTCAAGTACTGTCCATGCTGGAAGCAACTGA
Protein Sequence MSTVGSTVSSTPSRRFKHRNVNTFLTYSRCPLEPEAVGLHIWSLIAHWTPVYVLSVRETHEDGGYHIHVLAQSAKPVYTTDSGFFDIDGFHPNIQSAKSANKVRAYAMKNPVTYWERGTFIPRKTSFLGDSTEPNSKKQSKDDIVRDIIEHSTNKQEYLSMIQKALPYEWATKLQYFEYSANKLFPDIQEIYTSPFPQSTPALLDPTAINTWLENNLYQVSPSAYMLANPSCLTLEEATSDLIWMHETSRTLIPTGSSACTSSGQQEQASPPGPGAWEDIITGRTTSTGPPTTRTQNTTSSTTYPSSTVHAGSN

References More References in PubMed

1

First report of Sugarcane Streak Mosaic Virus (SCSMV) infecting sugarcane in Côte d'Ivoire.

Sorho F, et al.  Plant Dis. 2020 Aug 25. doi: 10.1094/PDIS-07-19-1398-PDN. Online ahead of print.

PMID: 32840438

2

Sugarcane Streak Mosaic Virus P1 Attenuates Plant Antiviral Immunity and Enhances Potato Virus X Infection in Nicotiana benthamiana.

Zhang K, et al.  Cells. 2022 Sep 14;11(18):2870. doi: 10.3390/cells11182870.

PMID: 36139443

3

Historical Review on Sugarcane Streak Mosaic Virus That Has Recently Emerged in Africa.

Daugrois JH, et al.  Phytopathology. 2023 Nov 15. doi: 10.1094/PHYTO-08-23-0291-RVW. Online ahead of print.

PMID: 37966994

4

Relationship between Sugarcane eIF4E Gene and Resistance against Sugarcane Streak Mosaic Virus.

Shan H, et al.  Plants (Basel). 2023 Jul 28;12(15):2805. doi: 10.3390/plants12152805.

PMID: 37570959

5

Identification of the RNA silencing suppressor activity of sugarcane streak mosaic virus P1 gene.

Bagyalakshmi K, et al.  Virusdisease. 2020 Sep;31(3):333-340. doi: 10.1007/s13337-020-00618-7. Epub 2020 Aug 12.

PMID: 32904853

6

Sugarcane streak mosaic virus P1 protein inhibits unfolded protein response through direct suppression of bZIP60U splicing.

Zhang K, et al.  PLoS Pathog. 2023 Oct 26;19(10):e1011738. doi: 10.1371/journal.ppat.1011738. Online ahead of print.

PMID: 37883577

7

Identification and molecular characterization of a novel sugarcane streak mastrevirus and an isolate of the A-strain of maize streak virus from sugarcane in Nigeria.

Yahaya A, et al.  Arch Virol. 2017 Feb;162(2):597-602. doi: 10.1007/s00705-016-3148-5. Epub 2016 Nov 4.

PMID: 27815694

8

Complete Genomic Sequence Analysis of a Sugarcane Streak Mosaic Virus Isolate from Yunnan Province of China.

Su XL, et al.  Genes (Basel). 2023 Aug 28;14(9):1713. doi: 10.3390/genes14091713.

PMID: 37761853

9

First Report of Maize streak virus Field Infection of Sugarcane in South Africa.

van Antwerpen T, et al.  Plant Dis. 2008 Jun;92(6):982. doi: 10.1094/PDIS-92-6-0982A.

PMID: 30769738

10

Identification of resistance to Sugarcane mosaic virus, Sugarcane streak mosaic virus, and Sugarcane bacilliform virus in new elite sugarcane accessions in India.

Vamsi Krishna G, et al.  Front Microbiol. 2023 Oct 20;14:1276932. doi: 10.3389/fmicb.2023.1276932. eCollection 2023.

PMID: 37928678