Sugarcane streak virus


Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000840065.1
Release date 2015/2/12
Submitter Hughes,F.L.
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_003744
ATGGATAGCTTTGGCAGAGCTCCTCCTCTTTGGCCGCAGTCAGCTTTGCCTCGGGTCCCTGGTGCTGCTCCGTCGTCCTCTGGACTGCCGTGGAGCCGCGTCGGTGAGATAGCTATCTTTACCTTTGTTGCAGTATTGGCGCTTTACCTGCTCTGGAGTTGGGTGGGTAGAGATCTTCTCTTGGTTCTTAAGGCTCGCCGCGGAGGCACTACGGAGGAGCTGACATTTGGGCCCAGGGAGCGCCACAGTTTACCAGCTGTAGCTGTTGCTCGGGTGGAAAATCCTCCGTGTCCCAGTGGTTCAGTGGAAGCTAGACCGTTCACCGGTTAGCTGTGCCCTCAGCATGCCTCTCTCTGGAATGAAGCGTAAGAGGTCCGATGAGACGGGTCGCCGTAAGAGATCTTCTGGGGTGAAGCAGGGGCGTACATCTGCCGCCCGTGCTGGTTCTGCTGTTCGCAGGACTCGTCCCTCTCTGCAGATCCAGACGCTGCAGGCGGCTGGTACTTCAATGATCGAAGTGCCATCCGGTGGCGTTTGTGACCTTCTTGGTTCCTTCTCCCGTGGCTCTGACGAGGGGAACAGGCACACCAACGAGACTGTCATCTACAAGGTGGCACTGGACTACCACTTCATTGCTACCGCTGCTGCCTGCAAGTATTCATCTATTGGCACTGGCGTGGTGTGGTTGGTGTATGACGCACAGCCTTCGGGGAATCCCCCGACAGTGAAGGATATTTTCCCTCACCCTGATACTTTGACAGCGTTCCCGTACACCTGGAAGGTTGGTCGTGAAGTGTGTCATCGGTTCGTGGTGAAGCGGAGGTGGACTTTCACGATGGAAGTTAACGGGCGTATCGGTTCCGATATACCTCCTAGTACCAGCTGTTGGCCCCCGTGCCGTAAGAACATTTACTTCCACAAGTTTGTCACCGGCTTAGGTGTTAAAACGGAGTGGAAGAACACTACCGGCGGTGAAGTCGGTGACATTAAGAAGGGTGCCCTGTATATTGTAATTGCCCCTGGCAATGGGTTAGATTTTACGGTGCATGGTAATGCCCGTTTGTATTTCAAGTCAGTCGGGAACCAGTAGGTCCTGAGTTTAATAAAATTCCATTTTATTTCATGATAAGTCTAGCCTTGTCTCTGACAAGGTGGGTTACACAGGCAGCCGCTTGGCTGACAAAAACACTAAACTGATACAAACGGCGGCAGATCGTAGGCGGCTAAGGGATAGGAATATGAAAAAAAAAACACATCCAAACTGACATTATTGAAATTGGTCGGCGCTCAGACTTCGCTAGAAGGATGGGCTGTAGCTGACACCGCTGGCAGGCTGAAGAACCGCTCTCCCGGTTCTAGCATGTATGTCTCACAGTTTGCATTGAAATAGTCCTGCTGGGCAGGCGTCATGTCTCTCAACCAGTCCTCATCCTCATTGGCTAGCACTATAGTGGGGATGGATTTACTAGCTACTTTCTTACGCTTGCCGTACTTTGGATTTACAATATAATCCTTCTGGCAGCCAATCAGTTGCTTCCAGCATGGACAGTACTTGAAGGGTATGTCGTCGATGATGTTGTATTCTGCGTCCTCGTCGTAGGAGGACCAGTCGACGTTGTTCTGCCAGTAATTATGTCTTCCCAGGCTCCTGGCCCAGGAGGACTTGCCTGTTCTTGTTGGCCCGAGGATGTACAGGCTGAGCTTCCTGTTGGAATTAGAGTTCTGGATGTTTCATGCATCCATATCAGATCAGAAGTTGCTTCTTCCAGGGTTAAGCAACTGGGATTAGCTAGCATGTATGCAGAAGGACTAACCTGGTAGAGGTTGTTCTCAAGCCAGGTATTTATTGCCGTAGGATCGAGGAGTGCTGGTGTGCTTTGAGGGAAAGGACTGGTGTATATTTCCTGGATGTCAGGAAACAGTTTATTTGCCGAATACTCAAAGTATTGTAGTTTGGTGGCCCACTCGTAAGGTAGAGCTTTCTGTATCATGGAGAGGTACTCTTGCTTGTTGGTGGAATGTTCTATGATATCTCTTACGATATCATCCTTGGATTGCTTCTTGGAATTTGGCTCAGTCGAATCTCCTAGGAAGGAGGTCTTCCTAGGTATGAACGTACCTCTCTCCCAGTATGTAACCGGGTTCTTCATGGCGTATGCTCTGACCTTGTTGGCACTCTTTGCACTCTGAATGTTGGGATGGAAGCCATCAATGTCGAAGAAGCCGGAGTCAGTTGTGTAGACAGGTTTTGCACTCTGAGCGAGTACGTGGATGTGATACCCTCCGTCTTCATGTGTCTCCCTGACAGATAGGACATACACTGGTGTCCAGTGTGCAATGAGGCTCCATATGTGTAGACCTACAGCTTCAGGTTCTAATGGACAGCGAGAGTAGGTGAGGAACGTGTTCACGTTGCGGTGTTTGAAGCGACGGCTAGGAGTGGAAGACACAGTTGATCCTACGGTCGACATCTCTTTGGGCAGTGTCTGATTTGGAGCCTCAACCAACCTCCTACAGGTTTGCGATTTAGAATCACGCACTCCCCCTGCCCTCTTATAGGAGTGCTAAATGGGCTGGGCCGAATTTTTTCTTGGGCCGCAATGAAAAAGCGCAAACCAATAATATTACAGCGCTTTTTCATGCGAGGCCCACCAGGCCGACGGGTCCCGGTTCTGGGTGCGTTTTGTTCTTTATTGCCGGCTGCTTTGAAACGCCGGCTTTGGATCGCACTATAAGGGGGTTGTGTCATGTGTTCGAC

Gene Information

NCBI Accession NP_620490.1
Location 1-330
Protein Name movement protein
Coding Region ATGGATAGCTTTGGCAGAGCTCCTCCTCTTTGGCCGCAGTCAGCTTTGCCTCGGGTCCCTGGTGCTGCTCCGTCGTCCTCTGGACTGCCGTGGAGCCGCGTCGGTGAGATAGCTATCTTTACCTTTGTTGCAGTATTGGCGCTTTACCTGCTCTGGAGTTGGGTGGGTAGAGATCTTCTCTTGGTTCTTAAGGCTCGCCGCGGAGGCACTACGGAGGAGCTGACATTTGGGCCCAGGGAGCGCCACAGTTTACCAGCTGTAGCTGTTGCTCGGGTGGAAAATCCTCCGTGTCCCAGTGGTTCAGTGGAAGCTAGACCGTTCACCGGTTAG
Protein Sequence MDSFGRAPPLWPQSALPRVPGAAPSSSGLPWSRVGEIAIFTFVAVLALYLLWSWVGRDLLLVLKARRGGTTEELTFGPRERHSLPAVAVARVENPPCPSGSVEARPFTG

NCBI Accession NP_620491.1
Location 344-1090
Protein Name coat protein
Coding Region ATGCCTCTCTCTGGAATGAAGCGTAAGAGGTCCGATGAGACGGGTCGCCGTAAGAGATCTTCTGGGGTGAAGCAGGGGCGTACATCTGCCGCCCGTGCTGGTTCTGCTGTTCGCAGGACTCGTCCCTCTCTGCAGATCCAGACGCTGCAGGCGGCTGGTACTTCAATGATCGAAGTGCCATCCGGTGGCGTTTGTGACCTTCTTGGTTCCTTCTCCCGTGGCTCTGACGAGGGGAACAGGCACACCAACGAGACTGTCATCTACAAGGTGGCACTGGACTACCACTTCATTGCTACCGCTGCTGCCTGCAAGTATTCATCTATTGGCACTGGCGTGGTGTGGTTGGTGTATGACGCACAGCCTTCGGGGAATCCCCCGACAGTGAAGGATATTTTCCCTCACCCTGATACTTTGACAGCGTTCCCGTACACCTGGAAGGTTGGTCGTGAAGTGTGTCATCGGTTCGTGGTGAAGCGGAGGTGGACTTTCACGATGGAAGTTAACGGGCGTATCGGTTCCGATATACCTCCTAGTACCAGCTGTTGGCCCCCGTGCCGTAAGAACATTTACTTCCACAAGTTTGTCACCGGCTTAGGTGTTAAAACGGAGTGGAAGAACACTACCGGCGGTGAAGTCGGTGACATTAAGAAGGGTGCCCTGTATATTGTAATTGCCCCTGGCAATGGGTTAGATTTTACGGTGCATGGTAATGCCCGTTTGTATTTCAAGTCAGTCGGGAACCAGTAG
Protein Sequence MPLSGMKRKRSDETGRRKRSSGVKQGRTSAARAGSAVRRTRPSLQIQTLQAAGTSMIEVPSGGVCDLLGSFSRGSDEGNRHTNETVIYKVALDYHFIATAAACKYSSIGTGVVWLVYDAQPSGNPPTVKDIFPHPDTLTAFPYTWKVGREVCHRFVVKRRWTFTMEVNGRIGSDIPPSTSCWPPCRKNIYFHKFVTGLGVKTEWKNTTGGEVGDIKKGALYIVIAPGNGLDFTVHGNARLYFKSVGNQ

NCBI Accession NP_620492.1
Location 1527-2471
Protein Name replicase A
Coding Region ATGTCGACCGTAGGATCAACTGTGTCTTCCACTCCTAGCCGTCGCTTCAAACACCGCAACGTGAACACGTTCCTCACCTACTCTCGCTGTCCATTAGAACCTGAAGCTGTAGGTCTACACATATGGAGCCTCATTGCACACTGGACACCAGTGTATGTCCTATCTGTCAGGGAGACACATGAAGACGGAGGGTATCACATCCACGTACTCGCTCAGAGTGCAAAACCTGTCTACACAACTGACTCCGGCTTCTTCGACATTGATGGCTTCCATCCCAACATTCAGAGTGCAAAGAGTGCCAACAAGGTCAGAGCATACGCCATGAAGAACCCGGTTACATACTGGGAGAGAGGTACGTTCATACCTAGGAAGACCTCCTTCCTAGGAGATTCGACTGAGCCAAATTCCAAGAAGCAATCCAAGGATGATATCGTAAGAGATATCATAGAACATTCCACCAACAAGCAAGAGTACCTCTCCATGATACAGAAAGCTCTACCTTACGAGTGGGCCACCAAACTACAATACTTTGAGTATTCGGCAAATAAACTGTTTCCTGACATCCAGGAAATATACACCAGTCCTTTCCCTCAAAGCACACCAGCACTCCTCGATCCTACGGCAATAAATACCTGGCTTGAGAACAACCTCTACCAGGTTAGTCCTTCTGCATACATGCTAGCTAATCCCAGTTGCTTAACCCTGGAAGAAGCAACTTCTGATCTGATATGGATGCATGAAACATCCAGAACTCTAATTCCAACAGGAAGCTCAGCCTGTACATCCTCGGGCCAACAAGAACAGGCAAGTCCTCCTGGGCCAGGAGCCTGGGAAGACATAATTACTGGCAGAACAACGTCGACTGGTCCTCCTACGACGAGGACGCAGAATACAACATCATCGACGACATACCCTTCAAGTACTGTCCATGCTGGAAGCAACTGA
Protein Sequence MSTVGSTVSSTPSRRFKHRNVNTFLTYSRCPLEPEAVGLHIWSLIAHWTPVYVLSVRETHEDGGYHIHVLAQSAKPVYTTDSGFFDIDGFHPNIQSAKSANKVRAYAMKNPVTYWERGTFIPRKTSFLGDSTEPNSKKQSKDDIVRDIIEHSTNKQEYLSMIQKALPYEWATKLQYFEYSANKLFPDIQEIYTSPFPQSTPALLDPTAINTWLENNLYQVSPSAYMLANPSCLTLEEATSDLIWMHETSRTLIPTGSSACTSSGQQEQASPPGPGAWEDIITGRTTSTGPPTTRTQNTTSSTTYPSSTVHAGSN

References More References in PubMed

1

Historical Review of Sugarcane Streak Mosaic Virus that Has Recently Emerged in Africa.

Daugrois J, et al.  Phytopathology. 2024 Apr;114(4):668-680. doi: 10.1094/PHYTO-08-23-0291-RVW. Epub 2024 Apr 22.

PMID: 37966994

2

Development and application of sugarcane streak mosaic virus vectors.

Yin Y, et al.  Virology. 2024 May;593:110028. doi: 10.1016/j.virol.2024.110028. Epub 2024 Feb 15.

PMID: 38394980

3

Sugarcane Streak Mosaic Virus P1 Attenuates Plant Antiviral Immunity and Enhances Potato Virus X Infection in Nicotiana benthamiana.

Zhang K, et al.  Cells. 2022 Sep 14;11(18):2870. doi: 10.3390/cells11182870.

PMID: 36139443

4

Complete Genomic Sequence Analysis of a Sugarcane Streak Mosaic Virus Isolate from Yunnan Province of China.

Su XL, et al.  Genes (Basel). 2023 Aug 28;14(9):1713. doi: 10.3390/genes14091713.

PMID: 37761853

5

Relationship between Sugarcane eIF4E Gene and Resistance against Sugarcane Streak Mosaic Virus.

Shan H, et al.  Plants (Basel). 2023 Jul 28;12(15):2805. doi: 10.3390/plants12152805.

PMID: 37570959

6

Sugarcane streak mosaic virus P1 protein inhibits unfolded protein response through direct suppression of bZIP60U splicing.

Zhang K, et al.  PLoS Pathog. 2023 Oct 26;19(10):e1011738. doi: 10.1371/journal.ppat.1011738. eCollection 2023 Oct.

PMID: 37883577

7

Identification of the RNA silencing suppressor activity of sugarcane streak mosaic virus P1 gene.

Bagyalakshmi K, et al.  Virusdisease. 2020 Sep;31(3):333-340. doi: 10.1007/s13337-020-00618-7. Epub 2020 Aug 12.

PMID: 32904853

8

A rapid visual detection method for Sugarcane streak mosaic virus based on one-tube RPA-CRISPR/Cas12a.

Gao S, et al.  Talanta. 2025 Aug 15;291:127888. doi: 10.1016/j.talanta.2025.127888. Epub 2025 Mar 3.

PMID: 40049000

9

Comprehensive virome profiling of sugarcane and simplified duplex OneStep RT-PCR assay reveals the prevalence of sugarcane streak mosaic virus along with sugarcane yellow leaf virus in India.

Srivastava N, et al.  J Genet Eng Biotechnol. 2024 Dec;22(4):100442. doi: 10.1016/j.jgeb.2024.100442. Epub 2024 Nov 26.

PMID: 39674653

10

Identification of resistance to Sugarcane mosaic virus, Sugarcane streak mosaic virus, and Sugarcane bacilliform virus in new elite sugarcane accessions in India.

Vamsi Krishna G, et al.  Front Microbiol. 2023 Oct 20;14:1276932. doi: 10.3389/fmicb.2023.1276932. eCollection 2023.

PMID: 37928678