Sugarcane streak virus
Basic Information
| Genus | Mastrevirus |
|---|---|
| NCBI Assembly | GCF_000840065.1 |
| Release date | 2015/2/12 |
| Submitter | Hughes,F.L. |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_003744
Gene Information
| NCBI Accession | NP_620490.1 |
|---|---|
| Location | 1-330 |
| Protein Name | movement protein |
| Coding Region | ATGGATAGCTTTGGCAGAGCTCCTCCTCTTTGGCCGCAGTCAGCTTTGCCTCGGGTCCCTGGTGCTGCTCCGTCGTCCTCTGGACTGCCGTGGAGCCGCGTCGGTGAGATAGCTATCTTTACCTTTGTTGCAGTATTGGCGCTTTACCTGCTCTGGAGTTGGGTGGGTAGAGATCTTCTCTTGGTTCTTAAGGCTCGCCGCGGAGGCACTACGGAGGAGCTGACATTTGGGCCCAGGGAGCGCCACAGTTTACCAGCTGTAGCTGTTGCTCGGGTGGAAAATCCTCCGTGTCCCAGTGGTTCAGTGGAAGCTAGACCGTTCACCGGTTAG |
| Protein Sequence | MDSFGRAPPLWPQSALPRVPGAAPSSSGLPWSRVGEIAIFTFVAVLALYLLWSWVGRDLLLVLKARRGGTTEELTFGPRERHSLPAVAVARVENPPCPSGSVEARPFTG |
| NCBI Accession | NP_620491.1 |
|---|---|
| Location | 344-1090 |
| Protein Name | coat protein |
| Coding Region | ATGCCTCTCTCTGGAATGAAGCGTAAGAGGTCCGATGAGACGGGTCGCCGTAAGAGATCTTCTGGGGTGAAGCAGGGGCGTACATCTGCCGCCCGTGCTGGTTCTGCTGTTCGCAGGACTCGTCCCTCTCTGCAGATCCAGACGCTGCAGGCGGCTGGTACTTCAATGATCGAAGTGCCATCCGGTGGCGTTTGTGACCTTCTTGGTTCCTTCTCCCGTGGCTCTGACGAGGGGAACAGGCACACCAACGAGACTGTCATCTACAAGGTGGCACTGGACTACCACTTCATTGCTACCGCTGCTGCCTGCAAGTATTCATCTATTGGCACTGGCGTGGTGTGGTTGGTGTATGACGCACAGCCTTCGGGGAATCCCCCGACAGTGAAGGATATTTTCCCTCACCCTGATACTTTGACAGCGTTCCCGTACACCTGGAAGGTTGGTCGTGAAGTGTGTCATCGGTTCGTGGTGAAGCGGAGGTGGACTTTCACGATGGAAGTTAACGGGCGTATCGGTTCCGATATACCTCCTAGTACCAGCTGTTGGCCCCCGTGCCGTAAGAACATTTACTTCCACAAGTTTGTCACCGGCTTAGGTGTTAAAACGGAGTGGAAGAACACTACCGGCGGTGAAGTCGGTGACATTAAGAAGGGTGCCCTGTATATTGTAATTGCCCCTGGCAATGGGTTAGATTTTACGGTGCATGGTAATGCCCGTTTGTATTTCAAGTCAGTCGGGAACCAGTAG |
| Protein Sequence | MPLSGMKRKRSDETGRRKRSSGVKQGRTSAARAGSAVRRTRPSLQIQTLQAAGTSMIEVPSGGVCDLLGSFSRGSDEGNRHTNETVIYKVALDYHFIATAAACKYSSIGTGVVWLVYDAQPSGNPPTVKDIFPHPDTLTAFPYTWKVGREVCHRFVVKRRWTFTMEVNGRIGSDIPPSTSCWPPCRKNIYFHKFVTGLGVKTEWKNTTGGEVGDIKKGALYIVIAPGNGLDFTVHGNARLYFKSVGNQ |
| NCBI Accession | NP_620492.1 |
|---|---|
| Location | 1527-2471 |
| Protein Name | replicase A |
| Coding Region | ATGTCGACCGTAGGATCAACTGTGTCTTCCACTCCTAGCCGTCGCTTCAAACACCGCAACGTGAACACGTTCCTCACCTACTCTCGCTGTCCATTAGAACCTGAAGCTGTAGGTCTACACATATGGAGCCTCATTGCACACTGGACACCAGTGTATGTCCTATCTGTCAGGGAGACACATGAAGACGGAGGGTATCACATCCACGTACTCGCTCAGAGTGCAAAACCTGTCTACACAACTGACTCCGGCTTCTTCGACATTGATGGCTTCCATCCCAACATTCAGAGTGCAAAGAGTGCCAACAAGGTCAGAGCATACGCCATGAAGAACCCGGTTACATACTGGGAGAGAGGTACGTTCATACCTAGGAAGACCTCCTTCCTAGGAGATTCGACTGAGCCAAATTCCAAGAAGCAATCCAAGGATGATATCGTAAGAGATATCATAGAACATTCCACCAACAAGCAAGAGTACCTCTCCATGATACAGAAAGCTCTACCTTACGAGTGGGCCACCAAACTACAATACTTTGAGTATTCGGCAAATAAACTGTTTCCTGACATCCAGGAAATATACACCAGTCCTTTCCCTCAAAGCACACCAGCACTCCTCGATCCTACGGCAATAAATACCTGGCTTGAGAACAACCTCTACCAGGTTAGTCCTTCTGCATACATGCTAGCTAATCCCAGTTGCTTAACCCTGGAAGAAGCAACTTCTGATCTGATATGGATGCATGAAACATCCAGAACTCTAATTCCAACAGGAAGCTCAGCCTGTACATCCTCGGGCCAACAAGAACAGGCAAGTCCTCCTGGGCCAGGAGCCTGGGAAGACATAATTACTGGCAGAACAACGTCGACTGGTCCTCCTACGACGAGGACGCAGAATACAACATCATCGACGACATACCCTTCAAGTACTGTCCATGCTGGAAGCAACTGA |
| Protein Sequence | MSTVGSTVSSTPSRRFKHRNVNTFLTYSRCPLEPEAVGLHIWSLIAHWTPVYVLSVRETHEDGGYHIHVLAQSAKPVYTTDSGFFDIDGFHPNIQSAKSANKVRAYAMKNPVTYWERGTFIPRKTSFLGDSTEPNSKKQSKDDIVRDIIEHSTNKQEYLSMIQKALPYEWATKLQYFEYSANKLFPDIQEIYTSPFPQSTPALLDPTAINTWLENNLYQVSPSAYMLANPSCLTLEEATSDLIWMHETSRTLIPTGSSACTSSGQQEQASPPGPGAWEDIITGRTTSTGPPTTRTQNTTSSTTYPSSTVHAGSN |
References More References in PubMed
| 1 |
Historical Review of Sugarcane Streak Mosaic Virus that Has Recently Emerged in Africa. Daugrois J, et al. Phytopathology. 2024 Apr;114(4):668-680. doi: 10.1094/PHYTO-08-23-0291-RVW. Epub 2024 Apr 22. PMID: 37966994 |
|---|---|
| 2 |
Development and application of sugarcane streak mosaic virus vectors. Yin Y, et al. Virology. 2024 May;593:110028. doi: 10.1016/j.virol.2024.110028. Epub 2024 Feb 15. PMID: 38394980 |
| 3 |
Zhang K, et al. Cells. 2022 Sep 14;11(18):2870. doi: 10.3390/cells11182870. PMID: 36139443 |
| 4 |
Su XL, et al. Genes (Basel). 2023 Aug 28;14(9):1713. doi: 10.3390/genes14091713. PMID: 37761853 |
| 5 |
Zhang K, et al. PLoS Pathog. 2023 Oct 26;19(10):e1011738. doi: 10.1371/journal.ppat.1011738. eCollection 2023 Oct. PMID: 37883577 |
| 6 |
Relationship between Sugarcane eIF4E Gene and Resistance against Sugarcane Streak Mosaic Virus. Shan H, et al. Plants (Basel). 2023 Jul 28;12(15):2805. doi: 10.3390/plants12152805. PMID: 37570959 |
| 7 |
Identification of the RNA silencing suppressor activity of sugarcane streak mosaic virus P1 gene. Bagyalakshmi K, et al. Virusdisease. 2020 Sep;31(3):333-340. doi: 10.1007/s13337-020-00618-7. Epub 2020 Aug 12. PMID: 32904853 |
| 8 |
Srivastava N, et al. J Genet Eng Biotechnol. 2024 Dec;22(4):100442. doi: 10.1016/j.jgeb.2024.100442. Epub 2024 Nov 26. PMID: 39674653 |
| 9 |
Gao S, et al. Talanta. 2025 Aug 15;291:127888. doi: 10.1016/j.talanta.2025.127888. Epub 2025 Mar 3. PMID: 40049000 |
| 10 |
He Z, et al. Virus Res. 2016 Jan 4;211:103-16. doi: 10.1016/j.virusres.2015.09.020. Epub 2015 Sep 30. PMID: 26432446 |