Sugarcane streak virus
Basic Information
Genomic Organization
JBrowse
Genome
ATGGATAGCTTTGGCAGAGCTCCTCCTCTTTGGCCGCAGTCAGCTTTGCCTCGGGTCCCTGGTGCTGCTCCGTCGTCCTCTGGACTGCCGTGGAGCCGCGTCGGTGAGATAGCTATCTTTACCTTTGTTGCAGTATTGGCGCTTTACCTGCTCTGGAGTTGGGTGGGTAGAGATCTTCTCTTGGTTCTTAAGGCTCGCCGCGGAGGCACTACGGAGGAGCTGACATTTGGGCCCAGGGAGCGCCACAGTTTACCAGCTGTAGCTGTTGCTCGGGTGGAAAATCCTCCGTGTCCCAGTGGTTCAGTGGAAGCTAGACCGTTCACCGGTTAGCTGTGCCCTCAGCATGCCTCTCTCTGGAATGAAGCGTAAGAGGTCCGATGAGACGGGTCGCCGTAAGAGATCTTCTGGGGTGAAGCAGGGGCGTACATCTGCCGCCCGTGCTGGTTCTGCTGTTCGCAGGACTCGTCCCTCTCTGCAGATCCAGACGCTGCAGGCGGCTGGTACTTCAATGATCGAAGTGCCATCCGGTGGCGTTTGTGACCTTCTTGGTTCCTTCTCCCGTGGCTCTGACGAGGGGAACAGGCACACCAACGAGACTGTCATCTACAAGGTGGCACTGGACTACCACTTCATTGCTACCGCTGCTGCCTGCAAGTATTCATCTATTGGCACTGGCGTGGTGTGGTTGGTGTATGACGCACAGCCTTCGGGGAATCCCCCGACAGTGAAGGATATTTTCCCTCACCCTGATACTTTGACAGCGTTCCCGTACACCTGGAAGGTTGGTCGTGAAGTGTGTCATCGGTTCGTGGTGAAGCGGAGGTGGACTTTCACGATGGAAGTTAACGGGCGTATCGGTTCCGATATACCTCCTAGTACCAGCTGTTGGCCCCCGTGCCGTAAGAACATTTACTTCCACAAGTTTGTCACCGGCTTAGGTGTTAAAACGGAGTGGAAGAACACTACCGGCGGTGAAGTCGGTGACATTAAGAAGGGTGCCCTGTATATTGTAATTGCCCCTGGCAATGGGTTAGATTTTACGGTGCATGGTAATGCCCGTTTGTATTTCAAGTCAGTCGGGAACCAGTAGGTCCTGAGTTTAATAAAATTCCATTTTATTTCATGATAAGTCTAGCCTTGTCTCTGACAAGGTGGGTTACACAGGCAGCCGCTTGGCTGACAAAAACACTAAACTGATACAAACGGCGGCAGATCGTAGGCGGCTAAGGGATAGGAATATGAAAAAAAAAACACATCCAAACTGACATTATTGAAATTGGTCGGCGCTCAGACTTCGCTAGAAGGATGGGCTGTAGCTGACACCGCTGGCAGGCTGAAGAACCGCTCTCCCGGTTCTAGCATGTATGTCTCACAGTTTGCATTGAAATAGTCCTGCTGGGCAGGCGTCATGTCTCTCAACCAGTCCTCATCCTCATTGGCTAGCACTATAGTGGGGATGGATTTACTAGCTACTTTCTTACGCTTGCCGTACTTTGGATTTACAATATAATCCTTCTGGCAGCCAATCAGTTGCTTCCAGCATGGACAGTACTTGAAGGGTATGTCGTCGATGATGTTGTATTCTGCGTCCTCGTCGTAGGAGGACCAGTCGACGTTGTTCTGCCAGTAATTATGTCTTCCCAGGCTCCTGGCCCAGGAGGACTTGCCTGTTCTTGTTGGCCCGAGGATGTACAGGCTGAGCTTCCTGTTGGAATTAGAGTTCTGGATGTTTCATGCATCCATATCAGATCAGAAGTTGCTTCTTCCAGGGTTAAGCAACTGGGATTAGCTAGCATGTATGCAGAAGGACTAACCTGGTAGAGGTTGTTCTCAAGCCAGGTATTTATTGCCGTAGGATCGAGGAGTGCTGGTGTGCTTTGAGGGAAAGGACTGGTGTATATTTCCTGGATGTCAGGAAACAGTTTATTTGCCGAATACTCAAAGTATTGTAGTTTGGTGGCCCACTCGTAAGGTAGAGCTTTCTGTATCATGGAGAGGTACTCTTGCTTGTTGGTGGAATGTTCTATGATATCTCTTACGATATCATCCTTGGATTGCTTCTTGGAATTTGGCTCAGTCGAATCTCCTAGGAAGGAGGTCTTCCTAGGTATGAACGTACCTCTCTCCCAGTATGTAACCGGGTTCTTCATGGCGTATGCTCTGACCTTGTTGGCACTCTTTGCACTCTGAATGTTGGGATGGAAGCCATCAATGTCGAAGAAGCCGGAGTCAGTTGTGTAGACAGGTTTTGCACTCTGAGCGAGTACGTGGATGTGATACCCTCCGTCTTCATGTGTCTCCCTGACAGATAGGACATACACTGGTGTCCAGTGTGCAATGAGGCTCCATATGTGTAGACCTACAGCTTCAGGTTCTAATGGACAGCGAGAGTAGGTGAGGAACGTGTTCACGTTGCGGTGTTTGAAGCGACGGCTAGGAGTGGAAGACACAGTTGATCCTACGGTCGACATCTCTTTGGGCAGTGTCTGATTTGGAGCCTCAACCAACCTCCTACAGGTTTGCGATTTAGAATCACGCACTCCCCCTGCCCTCTTATAGGAGTGCTAAATGGGCTGGGCCGAATTTTTTCTTGGGCCGCAATGAAAAAGCGCAAACCAATAATATTACAGCGCTTTTTCATGCGAGGCCCACCAGGCCGACGGGTCCCGGTTCTGGGTGCGTTTTGTTCTTTATTGCCGGCTGCTTTGAAACGCCGGCTTTGGATCGCACTATAAGGGGGTTGTGTCATGTGTTCGAC
Gene Information
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NCBI Accession
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NP_620490.1
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Location
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1-330 |
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Protein Name
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movement protein |
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Coding Region
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ATGGATAGCTTTGGCAGAGCTCCTCCTCTTTGGCCGCAGTCAGCTTTGCCTCGGGTCCCTGGTGCTGCTCCGTCGTCCTCTGGACTGCCGTGGAGCCGCGTCGGTGAGATAGCTATCTTTACCTTTGTTGCAGTATTGGCGCTTTACCTGCTCTGGAGTTGGGTGGGTAGAGATCTTCTCTTGGTTCTTAAGGCTCGCCGCGGAGGCACTACGGAGGAGCTGACATTTGGGCCCAGGGAGCGCCACAGTTTACCAGCTGTAGCTGTTGCTCGGGTGGAAAATCCTCCGTGTCCCAGTGGTTCAGTGGAAGCTAGACCGTTCACCGGTTAG |
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Protein Sequence
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MDSFGRAPPLWPQSALPRVPGAAPSSSGLPWSRVGEIAIFTFVAVLALYLLWSWVGRDLLLVLKARRGGTTEELTFGPRERHSLPAVAVARVENPPCPSGSVEARPFTG |
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NCBI Accession
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NP_620491.1
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Location
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344-1090 |
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Protein Name
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coat protein |
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Coding Region
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ATGCCTCTCTCTGGAATGAAGCGTAAGAGGTCCGATGAGACGGGTCGCCGTAAGAGATCTTCTGGGGTGAAGCAGGGGCGTACATCTGCCGCCCGTGCTGGTTCTGCTGTTCGCAGGACTCGTCCCTCTCTGCAGATCCAGACGCTGCAGGCGGCTGGTACTTCAATGATCGAAGTGCCATCCGGTGGCGTTTGTGACCTTCTTGGTTCCTTCTCCCGTGGCTCTGACGAGGGGAACAGGCACACCAACGAGACTGTCATCTACAAGGTGGCACTGGACTACCACTTCATTGCTACCGCTGCTGCCTGCAAGTATTCATCTATTGGCACTGGCGTGGTGTGGTTGGTGTATGACGCACAGCCTTCGGGGAATCCCCCGACAGTGAAGGATATTTTCCCTCACCCTGATACTTTGACAGCGTTCCCGTACACCTGGAAGGTTGGTCGTGAAGTGTGTCATCGGTTCGTGGTGAAGCGGAGGTGGACTTTCACGATGGAAGTTAACGGGCGTATCGGTTCCGATATACCTCCTAGTACCAGCTGTTGGCCCCCGTGCCGTAAGAACATTTACTTCCACAAGTTTGTCACCGGCTTAGGTGTTAAAACGGAGTGGAAGAACACTACCGGCGGTGAAGTCGGTGACATTAAGAAGGGTGCCCTGTATATTGTAATTGCCCCTGGCAATGGGTTAGATTTTACGGTGCATGGTAATGCCCGTTTGTATTTCAAGTCAGTCGGGAACCAGTAG |
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Protein Sequence
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MPLSGMKRKRSDETGRRKRSSGVKQGRTSAARAGSAVRRTRPSLQIQTLQAAGTSMIEVPSGGVCDLLGSFSRGSDEGNRHTNETVIYKVALDYHFIATAAACKYSSIGTGVVWLVYDAQPSGNPPTVKDIFPHPDTLTAFPYTWKVGREVCHRFVVKRRWTFTMEVNGRIGSDIPPSTSCWPPCRKNIYFHKFVTGLGVKTEWKNTTGGEVGDIKKGALYIVIAPGNGLDFTVHGNARLYFKSVGNQ |
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NCBI Accession
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NP_620492.1
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Location
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1527-2471 |
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Protein Name
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replicase A |
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Coding Region
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ATGTCGACCGTAGGATCAACTGTGTCTTCCACTCCTAGCCGTCGCTTCAAACACCGCAACGTGAACACGTTCCTCACCTACTCTCGCTGTCCATTAGAACCTGAAGCTGTAGGTCTACACATATGGAGCCTCATTGCACACTGGACACCAGTGTATGTCCTATCTGTCAGGGAGACACATGAAGACGGAGGGTATCACATCCACGTACTCGCTCAGAGTGCAAAACCTGTCTACACAACTGACTCCGGCTTCTTCGACATTGATGGCTTCCATCCCAACATTCAGAGTGCAAAGAGTGCCAACAAGGTCAGAGCATACGCCATGAAGAACCCGGTTACATACTGGGAGAGAGGTACGTTCATACCTAGGAAGACCTCCTTCCTAGGAGATTCGACTGAGCCAAATTCCAAGAAGCAATCCAAGGATGATATCGTAAGAGATATCATAGAACATTCCACCAACAAGCAAGAGTACCTCTCCATGATACAGAAAGCTCTACCTTACGAGTGGGCCACCAAACTACAATACTTTGAGTATTCGGCAAATAAACTGTTTCCTGACATCCAGGAAATATACACCAGTCCTTTCCCTCAAAGCACACCAGCACTCCTCGATCCTACGGCAATAAATACCTGGCTTGAGAACAACCTCTACCAGGTTAGTCCTTCTGCATACATGCTAGCTAATCCCAGTTGCTTAACCCTGGAAGAAGCAACTTCTGATCTGATATGGATGCATGAAACATCCAGAACTCTAATTCCAACAGGAAGCTCAGCCTGTACATCCTCGGGCCAACAAGAACAGGCAAGTCCTCCTGGGCCAGGAGCCTGGGAAGACATAATTACTGGCAGAACAACGTCGACTGGTCCTCCTACGACGAGGACGCAGAATACAACATCATCGACGACATACCCTTCAAGTACTGTCCATGCTGGAAGCAACTGA |
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Protein Sequence
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MSTVGSTVSSTPSRRFKHRNVNTFLTYSRCPLEPEAVGLHIWSLIAHWTPVYVLSVRETHEDGGYHIHVLAQSAKPVYTTDSGFFDIDGFHPNIQSAKSANKVRAYAMKNPVTYWERGTFIPRKTSFLGDSTEPNSKKQSKDDIVRDIIEHSTNKQEYLSMIQKALPYEWATKLQYFEYSANKLFPDIQEIYTSPFPQSTPALLDPTAINTWLENNLYQVSPSAYMLANPSCLTLEEATSDLIWMHETSRTLIPTGSSACTSSGQQEQASPPGPGAWEDIITGRTTSTGPPTTRTQNTTSSTTYPSSTVHAGSN |