Sugarcane streak virus
Basic Information
| Genus | Mastrevirus |
|---|---|
| NCBI Assembly | GCF_000840065.1 |
| Release date | 2015/2/12 |
| Submitter | Hughes,F.L. |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_003744
Gene Information
| NCBI Accession | NP_620490.1 |
|---|---|
| Location | 1-330 |
| Protein Name | movement protein |
| Coding Region | ATGGATAGCTTTGGCAGAGCTCCTCCTCTTTGGCCGCAGTCAGCTTTGCCTCGGGTCCCTGGTGCTGCTCCGTCGTCCTCTGGACTGCCGTGGAGCCGCGTCGGTGAGATAGCTATCTTTACCTTTGTTGCAGTATTGGCGCTTTACCTGCTCTGGAGTTGGGTGGGTAGAGATCTTCTCTTGGTTCTTAAGGCTCGCCGCGGAGGCACTACGGAGGAGCTGACATTTGGGCCCAGGGAGCGCCACAGTTTACCAGCTGTAGCTGTTGCTCGGGTGGAAAATCCTCCGTGTCCCAGTGGTTCAGTGGAAGCTAGACCGTTCACCGGTTAG |
| Protein Sequence | MDSFGRAPPLWPQSALPRVPGAAPSSSGLPWSRVGEIAIFTFVAVLALYLLWSWVGRDLLLVLKARRGGTTEELTFGPRERHSLPAVAVARVENPPCPSGSVEARPFTG |
| NCBI Accession | NP_620491.1 |
|---|---|
| Location | 344-1090 |
| Protein Name | coat protein |
| Coding Region | ATGCCTCTCTCTGGAATGAAGCGTAAGAGGTCCGATGAGACGGGTCGCCGTAAGAGATCTTCTGGGGTGAAGCAGGGGCGTACATCTGCCGCCCGTGCTGGTTCTGCTGTTCGCAGGACTCGTCCCTCTCTGCAGATCCAGACGCTGCAGGCGGCTGGTACTTCAATGATCGAAGTGCCATCCGGTGGCGTTTGTGACCTTCTTGGTTCCTTCTCCCGTGGCTCTGACGAGGGGAACAGGCACACCAACGAGACTGTCATCTACAAGGTGGCACTGGACTACCACTTCATTGCTACCGCTGCTGCCTGCAAGTATTCATCTATTGGCACTGGCGTGGTGTGGTTGGTGTATGACGCACAGCCTTCGGGGAATCCCCCGACAGTGAAGGATATTTTCCCTCACCCTGATACTTTGACAGCGTTCCCGTACACCTGGAAGGTTGGTCGTGAAGTGTGTCATCGGTTCGTGGTGAAGCGGAGGTGGACTTTCACGATGGAAGTTAACGGGCGTATCGGTTCCGATATACCTCCTAGTACCAGCTGTTGGCCCCCGTGCCGTAAGAACATTTACTTCCACAAGTTTGTCACCGGCTTAGGTGTTAAAACGGAGTGGAAGAACACTACCGGCGGTGAAGTCGGTGACATTAAGAAGGGTGCCCTGTATATTGTAATTGCCCCTGGCAATGGGTTAGATTTTACGGTGCATGGTAATGCCCGTTTGTATTTCAAGTCAGTCGGGAACCAGTAG |
| Protein Sequence | MPLSGMKRKRSDETGRRKRSSGVKQGRTSAARAGSAVRRTRPSLQIQTLQAAGTSMIEVPSGGVCDLLGSFSRGSDEGNRHTNETVIYKVALDYHFIATAAACKYSSIGTGVVWLVYDAQPSGNPPTVKDIFPHPDTLTAFPYTWKVGREVCHRFVVKRRWTFTMEVNGRIGSDIPPSTSCWPPCRKNIYFHKFVTGLGVKTEWKNTTGGEVGDIKKGALYIVIAPGNGLDFTVHGNARLYFKSVGNQ |
| NCBI Accession | NP_620492.1 |
|---|---|
| Location | 1527-2471 |
| Protein Name | replicase A |
| Coding Region | ATGTCGACCGTAGGATCAACTGTGTCTTCCACTCCTAGCCGTCGCTTCAAACACCGCAACGTGAACACGTTCCTCACCTACTCTCGCTGTCCATTAGAACCTGAAGCTGTAGGTCTACACATATGGAGCCTCATTGCACACTGGACACCAGTGTATGTCCTATCTGTCAGGGAGACACATGAAGACGGAGGGTATCACATCCACGTACTCGCTCAGAGTGCAAAACCTGTCTACACAACTGACTCCGGCTTCTTCGACATTGATGGCTTCCATCCCAACATTCAGAGTGCAAAGAGTGCCAACAAGGTCAGAGCATACGCCATGAAGAACCCGGTTACATACTGGGAGAGAGGTACGTTCATACCTAGGAAGACCTCCTTCCTAGGAGATTCGACTGAGCCAAATTCCAAGAAGCAATCCAAGGATGATATCGTAAGAGATATCATAGAACATTCCACCAACAAGCAAGAGTACCTCTCCATGATACAGAAAGCTCTACCTTACGAGTGGGCCACCAAACTACAATACTTTGAGTATTCGGCAAATAAACTGTTTCCTGACATCCAGGAAATATACACCAGTCCTTTCCCTCAAAGCACACCAGCACTCCTCGATCCTACGGCAATAAATACCTGGCTTGAGAACAACCTCTACCAGGTTAGTCCTTCTGCATACATGCTAGCTAATCCCAGTTGCTTAACCCTGGAAGAAGCAACTTCTGATCTGATATGGATGCATGAAACATCCAGAACTCTAATTCCAACAGGAAGCTCAGCCTGTACATCCTCGGGCCAACAAGAACAGGCAAGTCCTCCTGGGCCAGGAGCCTGGGAAGACATAATTACTGGCAGAACAACGTCGACTGGTCCTCCTACGACGAGGACGCAGAATACAACATCATCGACGACATACCCTTCAAGTACTGTCCATGCTGGAAGCAACTGA |
| Protein Sequence | MSTVGSTVSSTPSRRFKHRNVNTFLTYSRCPLEPEAVGLHIWSLIAHWTPVYVLSVRETHEDGGYHIHVLAQSAKPVYTTDSGFFDIDGFHPNIQSAKSANKVRAYAMKNPVTYWERGTFIPRKTSFLGDSTEPNSKKQSKDDIVRDIIEHSTNKQEYLSMIQKALPYEWATKLQYFEYSANKLFPDIQEIYTSPFPQSTPALLDPTAINTWLENNLYQVSPSAYMLANPSCLTLEEATSDLIWMHETSRTLIPTGSSACTSSGQQEQASPPGPGAWEDIITGRTTSTGPPTTRTQNTTSSTTYPSSTVHAGSN |
References More References in PubMed
| 1 |
First report of Sugarcane Streak Mosaic Virus (SCSMV) infecting sugarcane in Côte d'Ivoire. Sorho F, et al. Plant Dis. 2020 Aug 25. doi: 10.1094/PDIS-07-19-1398-PDN. Online ahead of print. PMID: 32840438 |
|---|---|
| 2 |
Zhang K, et al. Cells. 2022 Sep 14;11(18):2870. doi: 10.3390/cells11182870. PMID: 36139443 |
| 3 |
Historical Review on Sugarcane Streak Mosaic Virus That Has Recently Emerged in Africa. Daugrois JH, et al. Phytopathology. 2023 Nov 15. doi: 10.1094/PHYTO-08-23-0291-RVW. Online ahead of print. PMID: 37966994 |
| 4 |
Relationship between Sugarcane eIF4E Gene and Resistance against Sugarcane Streak Mosaic Virus. Shan H, et al. Plants (Basel). 2023 Jul 28;12(15):2805. doi: 10.3390/plants12152805. PMID: 37570959 |
| 5 |
Identification of the RNA silencing suppressor activity of sugarcane streak mosaic virus P1 gene. Bagyalakshmi K, et al. Virusdisease. 2020 Sep;31(3):333-340. doi: 10.1007/s13337-020-00618-7. Epub 2020 Aug 12. PMID: 32904853 |
| 6 |
Zhang K, et al. PLoS Pathog. 2023 Oct 26;19(10):e1011738. doi: 10.1371/journal.ppat.1011738. Online ahead of print. PMID: 37883577 |
| 7 |
Yahaya A, et al. Arch Virol. 2017 Feb;162(2):597-602. doi: 10.1007/s00705-016-3148-5. Epub 2016 Nov 4. PMID: 27815694 |
| 8 |
Su XL, et al. Genes (Basel). 2023 Aug 28;14(9):1713. doi: 10.3390/genes14091713. PMID: 37761853 |
| 9 |
First Report of Maize streak virus Field Infection of Sugarcane in South Africa. van Antwerpen T, et al. Plant Dis. 2008 Jun;92(6):982. doi: 10.1094/PDIS-92-6-0982A. PMID: 30769738 |
| 10 |
Vamsi Krishna G, et al. Front Microbiol. 2023 Oct 20;14:1276932. doi: 10.3389/fmicb.2023.1276932. eCollection 2023. PMID: 37928678 |