Sugarcane streak Reunion virus

Basic Information

Genus	Mastrevirus
NCBI Assembly	GCF_000843205.1
Release date	2015/2/12
Submitter	Bigarre,L., Salah,M., Granier,M., Frutos,R., Thouvenel,J., Peterschmitt,M., Thouvenel,J.C.
Download	Genome \|GFF3 \|PEP \|CDS

Genomic Organization

JBrowse

Genome

NC_004755

ACCGCGCTTTCTCATGCGAGCCCGTTAGGGCGAGCGGTCCCCTAGGCTTTAGGAGAGCTTGTTTTTCTCAGTCGGCCCCGATATTAAAGGGCCGCGTATGAATCGCACTATAAGTAGAGCCCTAGGTGCGATCTCTGCATGGATAGCCTTGAAGGAGCGTCCCCTGCTTTGCCCGCAGTAGCTTTGCCTCGTGTCCCCCGGGCAGCTCCGTCCGCTCCTGCGTTGCCGTGGAGCCGCGTTGGTGAAATAGCTATCTTTACCTTTGTTGCAGTGCTAGCGCTTTACTTACTTTGGGTTTGGGTGCTGAGAGATCTTGTCTTCGTTTTGAAGGCTCGACGAGGCGGATCTACGGAGGAGCTGCATTTTGGGCCCAGGGAGCGGGAGTCTGTCGCTTCTGCCGACAGTTCTCGTCCAGTCGCTGCTCCGTCGGCCCCTCCTGTAAGTGACGCTAGGCCTTTCTCGGTCTAGCTGCCGTGAGCATGCCTACTACCGCCGGGAAACGGAAGAGGACAGATGATGCCGCTTGGAGTAAGAGAGCTCGACCGAAGGCCGGGCGTACATCTGCCGCCCGGCCTGGTACTGCCGTTCGTCGGGTCCGTCCAGCTCTGCAGATCCAGACGCTCCAGGCGGCTGGCACGTCAATGATCACCGTTCCGTCGGGTGGTGTTTGTGATATCCTCGGGTCCTATTCACGAGGCTCTGACGAGTGCAATCGCCACACCAACGAGACTGTCACCTACAAGGTAGCTCTGGACTACCATTTCGTTGCTAGTGCAGCAGCCTGCAAGTATTCCAGTATTGGCACTGGCGTGGTGTGGTTGGTGTACGACGCACAGCCTCAGGGAAATTGTCCTACGGTGAAAGACATCTTCCCGCATCCTGACACTTTGAGCGCCTTCCCGTATACCTGGAAGGTCGGCCGAGAGGTGTGCCATCGGTTCGTGGTGAAGCGGCGGTGGACTTTCACGATGGAAGTCAATGGACGGATTGGATCTGATATGCCTCCTGCGACTGCCGTGTGGCCCCCGTGCCGGAAGAACATATACTTCCACAAGTTTGTCACCGGACTCGGCGTAAAAACGGAGTGGAAGAATACAACCGGCGGTGAAGTCGGAGACATTAAGAAGGGTGCCCTCTATATTGTAATTGCCCCAGGCAATGGACTCGATTTTACGGTGCATGGAAATGCCCGTTTGTACTTTAAGAGCGTTGGTAATCAGTGATTGCCAGCCAATGTAATAAAAACATTATTATTATGATTATCACGCCGCAGGCGTTACATTACATAGTCCGCAGATAGGCGGACAGGAAGCAAACACATACAATACTCGGCGGCCAGATCGTGGCGGCTAAGGGATAGCGCAGGAAAAAAACACACAAAAAAAACTGACATTATTGAAATTGGTCGGCGCTCAGACCCCGATAGGGGGATGGGCTGTAGCTGACACCGCGGGCCCGCCGAAGAAGCGCTCGCCTTCTTCCATTATGTAGACGACGCAGTTCTGATGAAAGTAGTCCAGCTGCCCTGGACTCATTACCTTCATCCAGTCTTCATCCTCGTTGGCAAGAACAATTGTGGAGATGCTTTTCTTGGCTACTCTCCGTTTCTTCCCATACTTGGGATTAACGACGTAGTTCTCTTGGCAACCAATCAGTTGCTTCCAGCAAGGACAGAACTTGAAGGGGATGTCGTCAATGACGTTGTAGACTGCGTCCTCGTCGTAGCAGGACCAGTCGACGTTGTTTTGCCAGTAATTATGTCTTCCCAGGCTACGGGCCCAAGTAGATTTTCCAGTTCTTGTTGGGCCGAGGATGTAGAGGCTAAGCTTTCTTGTACCTGTATTGTTCTGGATGTAGAAGACATCCATTCTAGGTCAGAGGATGCCTCTTCCAGGCTTAAGCAATGTGGGTTACAGAGCATGTATGCTTCAGGACTAACCTGAAACAGGTTGGGTTGCACCCAGTTGTCAATGGTGGTTGGGTCCCTCAGAAGTGGCGTGGTAGTAGGATGAGGACTGGTGTACTCTTCCACAGTATCTGGGAATAGCTTAGAAGCTGAGTATTCAAAGTATTGCAGTTTCGTAGCCCAGTCGTATGGTAATGCCTTCTGAAGCATGGAAAGGTACTCTTCCTTAGAGGTGGAGTGCTCGATGATATCTCTAACGATATCATCCTTGGAGGGTTTGGAATTCTTGCTCTCAGAGGAAGAGGATACAAAGCATTGTTTGCGTGGAATAAATGTACCTTTCTCCCATTTAGCGATTGGATTTTTCAGTATGTATTCCCTGACTTTGTTGGCACTCTTTGCACTCTGAATGTTAGGGTGGAAACTCTCAATGTCGAAGAACCCTTGGTTCGTCGTTTGTACAGGCCTGACGCTCTGGACTAAGGCATGGAGGTGCCATTCTCCATCTGCGTGTGCTTCCCTGCTCACTAGAATGTACGCCGGACTCCAGTGACTAATGAGCTGCCATAGTATCAGACCCACTGCCTCTGGGTCCAGTCTGCAGCGAGAGTAAGTGAGGAAGGTGTTGGCATTCCTATGCTTGAATGGCCTGGAGGCTACGGTGGAGTCCTCCTGTGAAGGCATGGAGTCTGATTTGGGAGCTCTCCAACTCTACTACAACAGGTTTTGCGAATCGAAATCCGACCTCCCTCGGCTTTATAGCCGACGTAAGTGGGCTGGGCCCAAAGTTTTTTGGGCCGCAATGAGAAAGCGCAAAACCAATAATATT

Gene Information

NCBI Accession	NP_840050.1
Location	139-468
Gene Name	V1
Protein Name	putative movement protein V1
Coding Region	ATGGATAGCCTTGAAGGAGCGTCCCCTGCTTTGCCCGCAGTAGCTTTGCCTCGTGTCCCCCGGGCAGCTCCGTCCGCTCCTGCGTTGCCGTGGAGCCGCGTTGGTGAAATAGCTATCTTTACCTTTGTTGCAGTGCTAGCGCTTTACTTACTTTGGGTTTGGGTGCTGAGAGATCTTGTCTTCGTTTTGAAGGCTCGACGAGGCGGATCTACGGAGGAGCTGCATTTTGGGCCCAGGGAGCGGGAGTCTGTCGCTTCTGCCGACAGTTCTCGTCCAGTCGCTGCTCCGTCGGCCCCTCCTGTAAGTGACGCTAGGCCTTTCTCGGTCTAG
Protein Sequence	MDSLEGASPALPAVALPRVPRAAPSAPALPWSRVGEIAIFTFVAVLALYLLWVWVLRDLVFVLKARRGGSTEELHFGPRERESVASADSSRPVAAPSAPPVSDARPFSV

NCBI Accession	NP_840051.1
Location	480-1223
Gene Name	V2
Protein Name	coat protein
Coding Region	ATGCCTACTACCGCCGGGAAACGGAAGAGGACAGATGATGCCGCTTGGAGTAAGAGAGCTCGACCGAAGGCCGGGCGTACATCTGCCGCCCGGCCTGGTACTGCCGTTCGTCGGGTCCGTCCAGCTCTGCAGATCCAGACGCTCCAGGCGGCTGGCACGTCAATGATCACCGTTCCGTCGGGTGGTGTTTGTGATATCCTCGGGTCCTATTCACGAGGCTCTGACGAGTGCAATCGCCACACCAACGAGACTGTCACCTACAAGGTAGCTCTGGACTACCATTTCGTTGCTAGTGCAGCAGCCTGCAAGTATTCCAGTATTGGCACTGGCGTGGTGTGGTTGGTGTACGACGCACAGCCTCAGGGAAATTGTCCTACGGTGAAAGACATCTTCCCGCATCCTGACACTTTGAGCGCCTTCCCGTATACCTGGAAGGTCGGCCGAGAGGTGTGCCATCGGTTCGTGGTGAAGCGGCGGTGGACTTTCACGATGGAAGTCAATGGACGGATTGGATCTGATATGCCTCCTGCGACTGCCGTGTGGCCCCCGTGCCGGAAGAACATATACTTCCACAAGTTTGTCACCGGACTCGGCGTAAAAACGGAGTGGAAGAATACAACCGGCGGTGAAGTCGGAGACATTAAGAAGGGTGCCCTCTATATTGTAATTGCCCCAGGCAATGGACTCGATTTTACGGTGCATGGAAATGCCCGTTTGTACTTTAAGAGCGTTGGTAATCAGTGA
Protein Sequence	MPTTAGKRKRTDDAAWSKRARPKAGRTSAARPGTAVRRVRPALQIQTLQAAGTSMITVPSGGVCDILGSYSRGSDECNRHTNETVTYKVALDYHFVASAAACKYSSIGTGVVWLVYDAQPQGNCPTVKDIFPHPDTLSAFPYTWKVGREVCHRFVVKRRWTFTMEVNGRIGSDMPPATAVWPPCRKNIYFHKFVTGLGVKTEWKNTTGGEVGDIKKGALYIVIAPGNGLDFTVHGNARLYFKSVGNQ

NCBI Accession	NP_840052.1
Location	1413->1847
Gene Name	C2
Protein Name	RepB
Coding Region	AACAATACAGGTACAAGAAAGCTTAGCCTCTACATCCTCGGCCCAACAAGAACTGGAAAATCTACTTGGGCCCGTAGCCTGGGAAGACATAATTACTGGCAAAACAACGTCGACTGGTCCTGCTACGACGAGGACGCAGTCTACAACGTCATTGACGACATCCCCTTCAAGTTCTGTCCTTGCTGGAAGCAACTGATTGGTTGCCAAGAGAACTACGTCGTTAATCCCAAGTATGGGAAGAAACGGAGAGTAGCCAAGAAAAGCATCTCCACAATTGTTCTTGCCAACGAGGATGAAGACTGGATGAAGGTAATGAGTCCAGGGCAGCTGGACTACTTTCATCAGAACTGCGTCGTCTACATAATGGAAGAAGGCGAGCGCTTCTTCGGCGGGCCCGCGGTGTCAGCTACAGCCCATCCCCCTATCGGGGTCTGA
Protein Sequence	NNTGTRKLSLYILGPTRTGKSTWARSLGRHNYWQNNVDWSCYDEDAVYNVIDDIPFKFCPCWKQLIGCQENYVVNPKYGKKRRVAKKSISTIVLANEDEDWMKVMSPGQLDYFHQNCVVYIMEEGERFFGGPAVSATAHPPIGV

NCBI Accession	NP_840053.1
Location	1652-2590
Gene Name	C1
Protein Name	RepA
Coding Region	ATGCCTTCACAGGAGGACTCCACCGTAGCCTCCAGGCCATTCAAGCATAGGAATGCCAACACCTTCCTCACTTACTCTCGCTGCAGACTGGACCCAGAGGCAGTGGGTCTGATACTATGGCAGCTCATTAGTCACTGGAGTCCGGCGTACATTCTAGTGAGCAGGGAAGCACACGCAGATGGAGAATGGCACCTCCATGCCTTAGTCCAGAGCGTCAGGCCTGTACAAACGACGAACCAAGGGTTCTTCGACATTGAGAGTTTCCACCCTAACATTCAGAGTGCAAAGAGTGCCAACAAAGTCAGGGAATACATACTGAAAAATCCAATCGCTAAATGGGAGAAAGGTACATTTATTCCACGCAAACAATGCTTTGTATCCTCTTCCTCTGAGAGCAAGAATTCCAAACCCTCCAAGGATGATATCGTTAGAGATATCATCGAGCACTCCACCTCTAAGGAAGAGTACCTTTCCATGCTTCAGAAGGCATTACCATACGACTGGGCTACGAAACTGCAATACTTTGAATACTCAGCTTCTAAGCTATTCCCAGATACTGTGGAAGAGTACACCAGTCCTCATCCTACTACCACGCCACTTCTGAGGGACCCAACCACCATTGACAACTGGGTGCAACCCAACCTGTTTCAGGTTAGTCCTGAAGCATACATGCTCTGTAACCCACATTGCTTAAGCCTGGAAGAGGCATCCTCTGACCTAGAATGGATGTCTTCTACATCCAGAACAATACAGGTACAAGAAAGCTTAGCCTCTACATCCTCGGCCCAACAAGAACTGGAAAATCTACTTGGGCCCGTAGCCTGGGAAGACATAATTACTGGCAAAACAACGTCGACTGGTCCTGCTACGACGAGGACGCAGTCTACAACGTCATTGACGACATCCCCTTCAAGTTCTGTCCTTGCTGGAAGCAACTGA
Protein Sequence	MPSQEDSTVASRPFKHRNANTFLTYSRCRLDPEAVGLILWQLISHWSPAYILVSREAHADGEWHLHALVQSVRPVQTTNQGFFDIESFHPNIQSAKSANKVREYILKNPIAKWEKGTFIPRKQCFVSSSSESKNSKPSKDDIVRDIIEHSTSKEEYLSMLQKALPYDWATKLQYFEYSASKLFPDTVEEYTSPHPTTTPLLRDPTTIDNWVQPNLFQVSPEAYMLCNPHCLSLEEASSDLEWMSSTSRTIQVQESLASTSSAQQELENLLGPVAWEDIITGKTTSTGPATTRTQSTTSLTTSPSSSVLAGSN

References More References in PubMed

1	Novel sugarcane streak and Sugarcane streak Reunion mastreviruses from southern Africa and La Reunion. Shepherd DN, et al. Arch Virol. 2008;153(3):605-9. doi: 10.1007/s00705-007-0016-3. Epub 2008 Jan 4. PMID: 18175043
2	First Report of Maize streak virus Field Infection of Sugarcane in South Africa. van Antwerpen T, et al. Plant Dis. 2008 Jun;92(6):982. doi: 10.1094/PDIS-92-6-0982A. PMID: 30769738
3	Occurrence of a novel mastrevirus in sugarcane germplasm collections in Florida, Guadeloupe and Reunion. Boukari W, et al. Virol J. 2017 Jul 28;14(1):146. doi: 10.1186/s12985-017-0810-9. PMID: 28754134
4	A high degree of African streak virus diversity within Nigerian maize fields includes a new mastrevirus from Axonopus compressus. Oluwafemi S, et al. Arch Virol. 2014 Oct;159(10):2765-70. doi: 10.1007/s00705-014-2090-7. Epub 2014 May 6. PMID: 24796552
5	Nucleotide sequence evidence for three distinct sugarcane streak mastreviruses. Bigarré L, et al. Arch Virol. 1999;144(12):2331-44. doi: 10.1007/s007050050647. PMID: 10664387
6	Molecular diversity, geographic distribution and host range of monocot-infecting mastreviruses in Africa and surrounding islands. Kraberger S, et al. Virus Res. 2017 Jun 15;238:171-178. doi: 10.1016/j.virusres.2017.07.001. Epub 2017 Jul 4. PMID: 28687345
7	Experimental evidence indicating that mastreviruses probably did not co-diverge with their hosts. Harkins GW, et al. Virol J. 2009 Jul 16;6:104. doi: 10.1186/1743-422X-6-104. PMID: 19607673