Sugarcane streak Reunion virus
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_000843205.1 |
| Release date |
2015/2/12 |
| Submitter |
Bigarre,L., Salah,M., Granier,M., Frutos,R., Thouvenel,J., Peterschmitt,M., Thouvenel,J.C. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGCGCTTTCTCATGCGAGCCCGTTAGGGCGAGCGGTCCCCTAGGCTTTAGGAGAGCTTGTTTTTCTCAGTCGGCCCCGATATTAAAGGGCCGCGTATGAATCGCACTATAAGTAGAGCCCTAGGTGCGATCTCTGCATGGATAGCCTTGAAGGAGCGTCCCCTGCTTTGCCCGCAGTAGCTTTGCCTCGTGTCCCCCGGGCAGCTCCGTCCGCTCCTGCGTTGCCGTGGAGCCGCGTTGGTGAAATAGCTATCTTTACCTTTGTTGCAGTGCTAGCGCTTTACTTACTTTGGGTTTGGGTGCTGAGAGATCTTGTCTTCGTTTTGAAGGCTCGACGAGGCGGATCTACGGAGGAGCTGCATTTTGGGCCCAGGGAGCGGGAGTCTGTCGCTTCTGCCGACAGTTCTCGTCCAGTCGCTGCTCCGTCGGCCCCTCCTGTAAGTGACGCTAGGCCTTTCTCGGTCTAGCTGCCGTGAGCATGCCTACTACCGCCGGGAAACGGAAGAGGACAGATGATGCCGCTTGGAGTAAGAGAGCTCGACCGAAGGCCGGGCGTACATCTGCCGCCCGGCCTGGTACTGCCGTTCGTCGGGTCCGTCCAGCTCTGCAGATCCAGACGCTCCAGGCGGCTGGCACGTCAATGATCACCGTTCCGTCGGGTGGTGTTTGTGATATCCTCGGGTCCTATTCACGAGGCTCTGACGAGTGCAATCGCCACACCAACGAGACTGTCACCTACAAGGTAGCTCTGGACTACCATTTCGTTGCTAGTGCAGCAGCCTGCAAGTATTCCAGTATTGGCACTGGCGTGGTGTGGTTGGTGTACGACGCACAGCCTCAGGGAAATTGTCCTACGGTGAAAGACATCTTCCCGCATCCTGACACTTTGAGCGCCTTCCCGTATACCTGGAAGGTCGGCCGAGAGGTGTGCCATCGGTTCGTGGTGAAGCGGCGGTGGACTTTCACGATGGAAGTCAATGGACGGATTGGATCTGATATGCCTCCTGCGACTGCCGTGTGGCCCCCGTGCCGGAAGAACATATACTTCCACAAGTTTGTCACCGGACTCGGCGTAAAAACGGAGTGGAAGAATACAACCGGCGGTGAAGTCGGAGACATTAAGAAGGGTGCCCTCTATATTGTAATTGCCCCAGGCAATGGACTCGATTTTACGGTGCATGGAAATGCCCGTTTGTACTTTAAGAGCGTTGGTAATCAGTGATTGCCAGCCAATGTAATAAAAACATTATTATTATGATTATCACGCCGCAGGCGTTACATTACATAGTCCGCAGATAGGCGGACAGGAAGCAAACACATACAATACTCGGCGGCCAGATCGTGGCGGCTAAGGGATAGCGCAGGAAAAAAACACACAAAAAAAACTGACATTATTGAAATTGGTCGGCGCTCAGACCCCGATAGGGGGATGGGCTGTAGCTGACACCGCGGGCCCGCCGAAGAAGCGCTCGCCTTCTTCCATTATGTAGACGACGCAGTTCTGATGAAAGTAGTCCAGCTGCCCTGGACTCATTACCTTCATCCAGTCTTCATCCTCGTTGGCAAGAACAATTGTGGAGATGCTTTTCTTGGCTACTCTCCGTTTCTTCCCATACTTGGGATTAACGACGTAGTTCTCTTGGCAACCAATCAGTTGCTTCCAGCAAGGACAGAACTTGAAGGGGATGTCGTCAATGACGTTGTAGACTGCGTCCTCGTCGTAGCAGGACCAGTCGACGTTGTTTTGCCAGTAATTATGTCTTCCCAGGCTACGGGCCCAAGTAGATTTTCCAGTTCTTGTTGGGCCGAGGATGTAGAGGCTAAGCTTTCTTGTACCTGTATTGTTCTGGATGTAGAAGACATCCATTCTAGGTCAGAGGATGCCTCTTCCAGGCTTAAGCAATGTGGGTTACAGAGCATGTATGCTTCAGGACTAACCTGAAACAGGTTGGGTTGCACCCAGTTGTCAATGGTGGTTGGGTCCCTCAGAAGTGGCGTGGTAGTAGGATGAGGACTGGTGTACTCTTCCACAGTATCTGGGAATAGCTTAGAAGCTGAGTATTCAAAGTATTGCAGTTTCGTAGCCCAGTCGTATGGTAATGCCTTCTGAAGCATGGAAAGGTACTCTTCCTTAGAGGTGGAGTGCTCGATGATATCTCTAACGATATCATCCTTGGAGGGTTTGGAATTCTTGCTCTCAGAGGAAGAGGATACAAAGCATTGTTTGCGTGGAATAAATGTACCTTTCTCCCATTTAGCGATTGGATTTTTCAGTATGTATTCCCTGACTTTGTTGGCACTCTTTGCACTCTGAATGTTAGGGTGGAAACTCTCAATGTCGAAGAACCCTTGGTTCGTCGTTTGTACAGGCCTGACGCTCTGGACTAAGGCATGGAGGTGCCATTCTCCATCTGCGTGTGCTTCCCTGCTCACTAGAATGTACGCCGGACTCCAGTGACTAATGAGCTGCCATAGTATCAGACCCACTGCCTCTGGGTCCAGTCTGCAGCGAGAGTAAGTGAGGAAGGTGTTGGCATTCCTATGCTTGAATGGCCTGGAGGCTACGGTGGAGTCCTCCTGTGAAGGCATGGAGTCTGATTTGGGAGCTCTCCAACTCTACTACAACAGGTTTTGCGAATCGAAATCCGACCTCCCTCGGCTTTATAGCCGACGTAAGTGGGCTGGGCCCAAAGTTTTTTGGGCCGCAATGAGAAAGCGCAAAACCAATAATATT
Gene Information
|
NCBI Accession
|
NP_840050.1
|
|
Location
|
139-468 |
|
Gene Name
|
V1 |
|
Protein Name
|
putative movement protein V1 |
|
Coding Region
|
ATGGATAGCCTTGAAGGAGCGTCCCCTGCTTTGCCCGCAGTAGCTTTGCCTCGTGTCCCCCGGGCAGCTCCGTCCGCTCCTGCGTTGCCGTGGAGCCGCGTTGGTGAAATAGCTATCTTTACCTTTGTTGCAGTGCTAGCGCTTTACTTACTTTGGGTTTGGGTGCTGAGAGATCTTGTCTTCGTTTTGAAGGCTCGACGAGGCGGATCTACGGAGGAGCTGCATTTTGGGCCCAGGGAGCGGGAGTCTGTCGCTTCTGCCGACAGTTCTCGTCCAGTCGCTGCTCCGTCGGCCCCTCCTGTAAGTGACGCTAGGCCTTTCTCGGTCTAG |
|
Protein Sequence
|
MDSLEGASPALPAVALPRVPRAAPSAPALPWSRVGEIAIFTFVAVLALYLLWVWVLRDLVFVLKARRGGSTEELHFGPRERESVASADSSRPVAAPSAPPVSDARPFSV |
|
NCBI Accession
|
NP_840051.1
|
|
Location
|
480-1223 |
|
Gene Name
|
V2 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGCCTACTACCGCCGGGAAACGGAAGAGGACAGATGATGCCGCTTGGAGTAAGAGAGCTCGACCGAAGGCCGGGCGTACATCTGCCGCCCGGCCTGGTACTGCCGTTCGTCGGGTCCGTCCAGCTCTGCAGATCCAGACGCTCCAGGCGGCTGGCACGTCAATGATCACCGTTCCGTCGGGTGGTGTTTGTGATATCCTCGGGTCCTATTCACGAGGCTCTGACGAGTGCAATCGCCACACCAACGAGACTGTCACCTACAAGGTAGCTCTGGACTACCATTTCGTTGCTAGTGCAGCAGCCTGCAAGTATTCCAGTATTGGCACTGGCGTGGTGTGGTTGGTGTACGACGCACAGCCTCAGGGAAATTGTCCTACGGTGAAAGACATCTTCCCGCATCCTGACACTTTGAGCGCCTTCCCGTATACCTGGAAGGTCGGCCGAGAGGTGTGCCATCGGTTCGTGGTGAAGCGGCGGTGGACTTTCACGATGGAAGTCAATGGACGGATTGGATCTGATATGCCTCCTGCGACTGCCGTGTGGCCCCCGTGCCGGAAGAACATATACTTCCACAAGTTTGTCACCGGACTCGGCGTAAAAACGGAGTGGAAGAATACAACCGGCGGTGAAGTCGGAGACATTAAGAAGGGTGCCCTCTATATTGTAATTGCCCCAGGCAATGGACTCGATTTTACGGTGCATGGAAATGCCCGTTTGTACTTTAAGAGCGTTGGTAATCAGTGA |
|
Protein Sequence
|
MPTTAGKRKRTDDAAWSKRARPKAGRTSAARPGTAVRRVRPALQIQTLQAAGTSMITVPSGGVCDILGSYSRGSDECNRHTNETVTYKVALDYHFVASAAACKYSSIGTGVVWLVYDAQPQGNCPTVKDIFPHPDTLSAFPYTWKVGREVCHRFVVKRRWTFTMEVNGRIGSDMPPATAVWPPCRKNIYFHKFVTGLGVKTEWKNTTGGEVGDIKKGALYIVIAPGNGLDFTVHGNARLYFKSVGNQ |
|
NCBI Accession
|
NP_840052.1
|
|
Location
|
1413->1847 |
|
Gene Name
|
C2 |
|
Protein Name
|
RepB |
|
Coding Region
|
AACAATACAGGTACAAGAAAGCTTAGCCTCTACATCCTCGGCCCAACAAGAACTGGAAAATCTACTTGGGCCCGTAGCCTGGGAAGACATAATTACTGGCAAAACAACGTCGACTGGTCCTGCTACGACGAGGACGCAGTCTACAACGTCATTGACGACATCCCCTTCAAGTTCTGTCCTTGCTGGAAGCAACTGATTGGTTGCCAAGAGAACTACGTCGTTAATCCCAAGTATGGGAAGAAACGGAGAGTAGCCAAGAAAAGCATCTCCACAATTGTTCTTGCCAACGAGGATGAAGACTGGATGAAGGTAATGAGTCCAGGGCAGCTGGACTACTTTCATCAGAACTGCGTCGTCTACATAATGGAAGAAGGCGAGCGCTTCTTCGGCGGGCCCGCGGTGTCAGCTACAGCCCATCCCCCTATCGGGGTCTGA |
|
Protein Sequence
|
NNTGTRKLSLYILGPTRTGKSTWARSLGRHNYWQNNVDWSCYDEDAVYNVIDDIPFKFCPCWKQLIGCQENYVVNPKYGKKRRVAKKSISTIVLANEDEDWMKVMSPGQLDYFHQNCVVYIMEEGERFFGGPAVSATAHPPIGV |
|
NCBI Accession
|
NP_840053.1
|
|
Location
|
1652-2590 |
|
Gene Name
|
C1 |
|
Protein Name
|
RepA |
|
Coding Region
|
ATGCCTTCACAGGAGGACTCCACCGTAGCCTCCAGGCCATTCAAGCATAGGAATGCCAACACCTTCCTCACTTACTCTCGCTGCAGACTGGACCCAGAGGCAGTGGGTCTGATACTATGGCAGCTCATTAGTCACTGGAGTCCGGCGTACATTCTAGTGAGCAGGGAAGCACACGCAGATGGAGAATGGCACCTCCATGCCTTAGTCCAGAGCGTCAGGCCTGTACAAACGACGAACCAAGGGTTCTTCGACATTGAGAGTTTCCACCCTAACATTCAGAGTGCAAAGAGTGCCAACAAAGTCAGGGAATACATACTGAAAAATCCAATCGCTAAATGGGAGAAAGGTACATTTATTCCACGCAAACAATGCTTTGTATCCTCTTCCTCTGAGAGCAAGAATTCCAAACCCTCCAAGGATGATATCGTTAGAGATATCATCGAGCACTCCACCTCTAAGGAAGAGTACCTTTCCATGCTTCAGAAGGCATTACCATACGACTGGGCTACGAAACTGCAATACTTTGAATACTCAGCTTCTAAGCTATTCCCAGATACTGTGGAAGAGTACACCAGTCCTCATCCTACTACCACGCCACTTCTGAGGGACCCAACCACCATTGACAACTGGGTGCAACCCAACCTGTTTCAGGTTAGTCCTGAAGCATACATGCTCTGTAACCCACATTGCTTAAGCCTGGAAGAGGCATCCTCTGACCTAGAATGGATGTCTTCTACATCCAGAACAATACAGGTACAAGAAAGCTTAGCCTCTACATCCTCGGCCCAACAAGAACTGGAAAATCTACTTGGGCCCGTAGCCTGGGAAGACATAATTACTGGCAAAACAACGTCGACTGGTCCTGCTACGACGAGGACGCAGTCTACAACGTCATTGACGACATCCCCTTCAAGTTCTGTCCTTGCTGGAAGCAACTGA |
|
Protein Sequence
|
MPSQEDSTVASRPFKHRNANTFLTYSRCRLDPEAVGLILWQLISHWSPAYILVSREAHADGEWHLHALVQSVRPVQTTNQGFFDIESFHPNIQSAKSANKVREYILKNPIAKWEKGTFIPRKQCFVSSSSESKNSKPSKDDIVRDIIEHSTSKEEYLSMLQKALPYDWATKLQYFEYSASKLFPDTVEEYTSPHPTTTPLLRDPTTIDNWVQPNLFQVSPEAYMLCNPHCLSLEEASSDLEWMSSTSRTIQVQESLASTSSAQQELENLLGPVAWEDIITGKTTSTGPATTRTQSTTSLTTSPSSSVLAGSN |