Sugarcane streak Egypt virus

Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000841765.1
Release date 2015/2/12
Submitter Bigarre,L., Salah,M., Granier,M., Frutos,R., Thouvenel,J., Peterschmitt,M.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_001868
ACCGCGCTCTCTCATGCGAGGCCCACCAGGCCGAGCGGTCCCGCTTTGGGGCCCTATGTCTTTCGTTAAAGCCTGTATGTAGTAAGGCGCTTTGGATCGCATATAAGTTCGTGCCCAGGCTCAGTGGTGCTATGGACGGCTCTGGAGGAGCGTTGCCTGCTTTGCCTCAAAGTGTTCTGCCGCGGGTACCCTCGCCACCTCCGTCTGCCGGAGTGCTGCCGTGGAGTCGCGTCGGTGAGATAGTGATTTTCACCTTTGTTGCTTTGGTAGCTCTGTACCTGTTATGGTTGTGGGTGCTGAGAGATCTTATCTTCCTTGTTAAGGCTCGCCGCGGGATCTCAACGGAGGAGGTGAGCTTTGGTACGTCAGATCTGGTTGGTTCGCAGGCTCCAACGCCGGTCGGTGTCTCTGCTAGCTGTCCGCCGGGACCTGTGCCGTTCACGGCCTAGGTAGCCCTCAGCCACCATGCCTCTTGCCGGCAGCAAAAGGAAGAGGGCCGATGAGGTGGCCTGGTCTAAGCGTGGCACTAAGAAGAAGCCAGAGCGTACATCTGCCGCTCGGGCTGGTCCGTCTAGGCGGATTCGTCCACCCCTGCAGATAGCCACGTTTGTGGCAGCCGGTCAGTCTATGGTGTCTGTCCCTTCCGGTGGTGTTTGTGAACTGCTAGGCTCCTATGCTCGAGGCGCTGACGAGGCCAACCGTCACACCAACGAGACTGTCACGTACAAGGTTGCCTTGGACTACCACTTCGTTGCTACTGCAGCCGCCTGCAAGTATTCCAGCATTGGCACTGGCGTGGCCTGGTTGGTGTATGATGCACAGCCTACCGGAAATACCCCGACGACGAAGGACATCTTCGGCTATAGTGACTCCCTTGTGGCGTTCCCCTACACATGGAAGGTTTCAAGGGAGGTGTGTCATCGCTTCGTGGTGAAGAGGAGATGCACTTTCACGATGGAGACCGACGGTCGGATTGGGTCGGATGTTCCTCCGGCGAATACCTCATGGTCGCCTTGTAAGCGGGCGATTTACTTCCATAAGTTCTTCACCGGCCTGGGTGTGAAGACGGAGTGGAAGAATCTCACAGACGGTGGTGTGGGAGCGATTAAGAAGGGTGCGTTGTACCTGGTCATTGCCCCTGGCAATGGTCTAGAGTTTACCTGCCATGGGCAGGCCCGTCTGTACTTCAAATCAGTTGGGAATCAGTGATTCCCTACAGAATAATAAAACAAGTTTTATAATTCCATTGATATTGGACGAAGTACAATACAGAATACAATGTCTGCAGATGTGCAGACGACAACATTAAACTGGTTTTGTGTGTCGCGAGGGGGAACCCGGAGCACGCTCCCAAAACACCCAACACACACACACCCAACTGAAGATTATTGAACATGCAGCCGCCGGCCTAAGCAGGCTTGTAGAACTTCTCGCCTGCTGTCATAATGTATATGACCGCGTTTGCCTCGAAGTACTCCCGTTGTCCGGGAGTCATCACCCTCAGCCAGTCCTCATCCTCGTTGGCTAGGATTATTGATGGAATGCTGTTGGAAGCTACCTTCTTCTTCTTACCGTACTTCGGGTTGACGACGTACTCTTTCTGGCAGCCAACCAGCTGCTTCCAGCAAGGACAGAATTTGAAGGGTATATCATCTATGATGTTATAGACTGCTTCCTCATCATAGGAAGACCAGTCCACATTATTCTGCCAGTAGTTGTGGCGCCCTAGGCTTCTGGCCCAGGTTGATTTCCCTGTTCTTGTTGGCCCAAGGATGTACAGAGACTGTTTCCTGTGCCCTGGGATGTTCTGGATGCGGATTGCATCCATTCTAAGTCAGAGATTGCTTCCTCAAGGGTTAAGCAGGTAGGAGTAAGCAGCATGTAGGCTTCTGGACTAACCTGATAGATGTTGGGGTTGAGCCAATCTTCTATGGTTTCGAAGTTTACGAGGTCCGGTTCAGTGGGAGGATGAGGATTGGTGTATACTTCTGCAGTCTCAGGAAACAATCTGGAGGCTGAGTACTCAAAGTACTGGAGCTTCGTTGCCCACTCGTAGGGGAGTGCCTTCTGAAGCATTGAAAGGTACTCTTGCTTGGAGGTGGAGTGTTCGATGATATCTCTCACGATATCATCTTTTGTGGGTTTAGGTTGCCTATCCTCAGATGAAGTGGTAGCAAAGGATTTCTTGCGTGGGATGAAAGTACCTTTCTCCCACTGTTTGATCGGGTTTTTGAGCACGTATTCCTTGACCCTGTCTGCGGACTTGGCACTCTGAATGTTAGGATGGAAATCCTCAATGTCAAAGAACCTAGGGTTCGTAGTTTGTACAGGCTTGACGCTCTGAGCTAAGGCATGGATATGCCAGGATCCATCAGCATGAGCTTCCCTGCTCACGACGATGTACGCTGGATTCCAGTGACCTATGAGACTCCAGAGATGGAGCCCAACAGCTTCAGGTTCTAGATGGCACTTGGAATATGTGAGGAATGTGTTTACGTTCCTGTGCTTGAAGGAACGGCTGGCAGAGCCTGACTCTGTTGATCCTACGGTTGTCATGGCTGGGCGAGAGGTCTGATTCTGAGTCTCAACTAACTCTCCTACAGGTTTGCGAATCGAAATCCGACCTCCCGTCTTATATAGAAGGTTAGTTGGGCCGGGCCAGGATTTTTCCTGGGCCGCAATGAGAGAGCGCAAACCGATAATATT

Gene Information

NCBI Accession NP_045942.1
Location 132-449
Gene Name V1
Protein Name putative movement protein
Coding Region ATGGACGGCTCTGGAGGAGCGTTGCCTGCTTTGCCTCAAAGTGTTCTGCCGCGGGTACCCTCGCCACCTCCGTCTGCCGGAGTGCTGCCGTGGAGTCGCGTCGGTGAGATAGTGATTTTCACCTTTGTTGCTTTGGTAGCTCTGTACCTGTTATGGTTGTGGGTGCTGAGAGATCTTATCTTCCTTGTTAAGGCTCGCCGCGGGATCTCAACGGAGGAGGTGAGCTTTGGTACGTCAGATCTGGTTGGTTCGCAGGCTCCAACGCCGGTCGGTGTCTCTGCTAGCTGTCCGCCGGGACCTGTGCCGTTCACGGCCTAG
Protein Sequence MDGSGGALPALPQSVLPRVPSPPPSAGVLPWSRVGEIVIFTFVALVALYLLWLWVLRDLIFLVKARRGISTEEVSFGTSDLVGSQAPTPVGVSASCPPGPVPFTA

NCBI Accession NP_045943.1
Location 466-1209
Gene Name V2
Protein Name coat protein
Coding Region ATGCCTCTTGCCGGCAGCAAAAGGAAGAGGGCCGATGAGGTGGCCTGGTCTAAGCGTGGCACTAAGAAGAAGCCAGAGCGTACATCTGCCGCTCGGGCTGGTCCGTCTAGGCGGATTCGTCCACCCCTGCAGATAGCCACGTTTGTGGCAGCCGGTCAGTCTATGGTGTCTGTCCCTTCCGGTGGTGTTTGTGAACTGCTAGGCTCCTATGCTCGAGGCGCTGACGAGGCCAACCGTCACACCAACGAGACTGTCACGTACAAGGTTGCCTTGGACTACCACTTCGTTGCTACTGCAGCCGCCTGCAAGTATTCCAGCATTGGCACTGGCGTGGCCTGGTTGGTGTATGATGCACAGCCTACCGGAAATACCCCGACGACGAAGGACATCTTCGGCTATAGTGACTCCCTTGTGGCGTTCCCCTACACATGGAAGGTTTCAAGGGAGGTGTGTCATCGCTTCGTGGTGAAGAGGAGATGCACTTTCACGATGGAGACCGACGGTCGGATTGGGTCGGATGTTCCTCCGGCGAATACCTCATGGTCGCCTTGTAAGCGGGCGATTTACTTCCATAAGTTCTTCACCGGCCTGGGTGTGAAGACGGAGTGGAAGAATCTCACAGACGGTGGTGTGGGAGCGATTAAGAAGGGTGCGTTGTACCTGGTCATTGCCCCTGGCAATGGTCTAGAGTTTACCTGCCATGGGCAGGCCCGTCTGTACTTCAAATCAGTTGGGAATCAGTGA
Protein Sequence MPLAGSKRKRADEVAWSKRGTKKKPERTSAARAGPSRRIRPPLQIATFVAAGQSMVSVPSGGVCELLGSYARGADEANRHTNETVTYKVALDYHFVATAAACKYSSIGTGVAWLVYDAQPTGNTPTTKDIFGYSDSLVAFPYTWKVSREVCHRFVVKRRCTFTMETDGRIGSDVPPANTSWSPCKRAIYFHKFFTGLGVKTEWKNLTDGGVGAIKKGALYLVIAPGNGLEFTCHGQARLYFKSVGNQ

NCBI Accession NP_045944.1
Location 1409->1816
Gene Name C2
Protein Name rep B
Coding Region CGCATCCAGAACATCCCAGGGCACAGGAAACAGTCTCTGTACATCCTTGGGCCAACAAGAACAGGGAAATCAACCTGGGCCAGAAGCCTAGGGCGCCACAACTACTGGCAGAATAATGTGGACTGGTCTTCCTATGATGAGGAAGCAGTCTATAACATCATAGATGATATACCCTTCAAATTCTGTCCTTGCTGGAAGCAGCTGGTTGGCTGCCAGAAAGAGTACGTCGTCAACCCGAAGTACGGTAAGAAGAAGAAGGTAGCTTCCAACAGCATTCCATCAATAATCCTAGCCAACGAGGATGAGGACTGGCTGAGGGTGATGACTCCCGGACAACGGGAGTACTTCGAGGCAAACGCGGTCATATACATTATGACAGCAGGCGAGAAGTTCTACAAGCCTGCTTAG
Protein Sequence RIQNIPGHRKQSLYILGPTRTGKSTWARSLGRHNYWQNNVDWSSYDEEAVYNIIDDIPFKFCPCWKQLVGCQKEYVVNPKYGKKKKVASNSIPSIILANEDEDWLRVMTPGQREYFEANAVIYIMTAGEKFYKPA

NCBI Accession NP_045945.1
Location 1726-2556
Gene Name C1
Protein Name rep A
Coding Region ATGACAACCGTAGGATCAACAGAGTCAGGCTCTGCCAGCCGTTCCTTCAAGCACAGGAACGTAAACACATTCCTCACATATTCCAAGTGCCATCTAGAACCTGAAGCTGTTGGGCTCCATCTCTGGAGTCTCATAGGTCACTGGAATCCAGCGTACATCGTCGTGAGCAGGGAAGCTCATGCTGATGGATCCTGGCATATCCATGCCTTAGCTCAGAGCGTCAAGCCTGTACAAACTACGAACCCTAGGTTCTTTGACATTGAGGATTTCCATCCTAACATTCAGAGTGCCAAGTCCGCAGACAGGGTCAAGGAATACGTGCTCAAAAACCCGATCAAACAGTGGGAGAAAGGTACTTTCATCCCACGCAAGAAATCCTTTGCTACCACTTCATCTGAGGATAGGCAACCTAAACCCACAAAAGATGATATCGTGAGAGATATCATCGAACACTCCACCTCCAAGCAAGAGTACCTTTCAATGCTTCAGAAGGCACTCCCCTACGAGTGGGCAACGAAGCTCCAGTACTTTGAGTACTCAGCCTCCAGATTGTTTCCTGAGACTGCAGAAGTATACACCAATCCTCATCCTCCCACTGAACCGGACCTCGTAAACTTCGAAACCATAGAAGATTGGCTCAACCCCAACATCTATCAGGTTAGTCCAGAAGCCTACATGCTGCTTACTCCTACCTGCTTAACCCTTGAGGAAGCAATCTCTGACTTAGAATGGATGCAATCCGCATCCAGAACATCCCAGGGCACAGGAAACAGTCTCTGTACATCCTTGGGCCAACAAGAACAGGGAAATCAACCTGGGCCAGAAGCCTAG
Protein Sequence MTTVGSTESGSASRSFKHRNVNTFLTYSKCHLEPEAVGLHLWSLIGHWNPAYIVVSREAHADGSWHIHALAQSVKPVQTTNPRFFDIEDFHPNIQSAKSADRVKEYVLKNPIKQWEKGTFIPRKKSFATTSSEDRQPKPTKDDIVRDIIEHSTSKQEYLSMLQKALPYEWATKLQYFEYSASRLFPETAEVYTNPHPPTEPDLVNFETIEDWLNPNIYQVSPEAYMLLTPTCLTLEEAISDLEWMQSASRTSQGTGNSLCTSLGQQEQGNQPGPEA

References More References in PubMed

1

Novel sugarcane streak and Sugarcane streak Reunion mastreviruses from southern Africa and La Reunion.

Shepherd DN, et al.  Arch Virol. 2008;153(3):605-9. doi: 10.1007/s00705-007-0016-3. Epub 2008 Jan 4.

PMID: 18175043
2

Nucleotide sequence evidence for three distinct sugarcane streak mastreviruses.

Bigarré L, et al.  Arch Virol. 1999;144(12):2331-44. doi: 10.1007/s007050050647.

PMID: 10664387
3

Sensitive detection of the Egyptian species of sugarcane streak virus by PCR-probe capture hybridization (PCR-ELISA) and its complete nucleotide sequence.

Shamloul AM, et al.  J Virol Methods. 2001 Mar;92(1):45-54. doi: 10.1016/s0166-0934(00)00272-x.

PMID: 11164917
4

Appearances can be deceptive: revealing a hidden viral infection with deep sequencing in a plant quarantine context.

Candresse T, et al.  PLoS One. 2014 Jul 25;9(7):e102945. doi: 10.1371/journal.pone.0102945. eCollection 2014.

PMID: 25061967