Sugarcane chlorotic streak virus
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_001891015.1 |
| Isolate |
Nigeria |
| Release date |
2016/12/8 |
| Submitter |
Yahaya,A., Dangora,D.B., Alegbejo,M.D., Kumar,P.L., Alabi,O.J. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGCGCTTTCTCATGCGAGCCCGCTAGGGCGAGCGGTCCCCGTTGCTGGGTGGATTTGTCTTTCTAAAGGCTGCCAGTTTAAAATGCAGCCGGCGCCAAGGACTATAAGATGCTTGTATGTGGGATCGCACTATGGAGGGCTTTTATCAAGCACCTCCTCTTTTGCCTTTGGGTGTTCGGCCTCAGGTTGCTGCTGCAGCTCCTTACAGCGGAAGTCTGCCGTGGAGTCGCGTCGGTGAGGTTGCTATTTTCACCTTTGTTGCAGTGCTAGGGCTGTACCTGCTGTGGCTTTGGGTGTTGCGAGATCTTTTCTTTGTTGTTAAGGCTCAGCGAGGTCGATCTACGGAGGAGCTGCACTTTGGGCCCACTGAGGTCCCTTCAGTACCCTCTGCAAGAGTAGATCTGTCGGCGCCTCCTGTAGGGCCTTCCGGTACAGCCCCGCCGCGCCCGTTCCTAGGGTAGGCGTTGCCTGCAGCATGTCATCTTCCGGTGCGAAACGCAAGAGGTCCGATGAGGGATCTTGGTCGAAGCGTAAGTCTGGTAAGAAGCAGCCGAGAGTGTCCTCCTCTCGTCGCGCTGGCCCTGCCCGAGGGCCTCGTCCTGCTCTTCAGATCGCCAACTATCAGGCGGCGGGCACCACTATGGTAACTGTCCCTTCGGGGGGCGTTTGTGAGTTGCTTGCTACCTATGCCCGAGGTTCTGATGAGGGCAACCGTCACACCAACGAGACTGTGACGTACAAGGTCGCTATGGATTACCACTTCGTGCTTACAGCAGCTGCGTGCAGGTACTCGTCCATCGGTGTTGGGGTCGCGTGGTTGGTGTATGACGCACAGCCCACGGGCAACGCCCCCCAGGTTACAGATATATTTCCGCATCCGGATTCTCTGGTTGCGTTCCCGTATACTTGGAAGGTCGGCAGGGAAGTGTGTCATCGCTTTGTGGTTAAGAGGCGGTGGACTTTCACGATGGAATCAGACGGGAGGATTGGCTCTGACATACCTCGCTCGACGGATGCTTGGCCGCCCTGCAAGCGGAGTATTTACTTCCACAAGTTTGTGACCGGACTCGGTGTAAAAACGGAGTGGAAGAATGTAGCGGACGGAGGAGTCGGTGCCATTAAGAAGGGTGCCCTGTATTTTGTAATTGCCCCTGGCAATGGTCAGGAATTTACCGTGCATGGAAATGCACGGTTGTACTTCAAGTCTGTTGGGAACCAGTGATCTCCCGATATAATAAAAACATTTTTATTATTGTTTTGATCTTGGAACGCGGAGCGTTACATTACATTCAGAAGTCTGCCGATGGGCAGACATAAAATACAAACATTACACAACCGGCGGCCAGATCGTGGCGGCTAAGGGATAGCGAATGAAAAAAACACACTAAAAAAACTGACATTATTAAAATTGGTCGGCGCTCAGACTTCGACAGAAGGATGGGCTGTAGCTGACACCGCTGGCCGGCCAAAGAACCGTTCACCCGGTTCCATGATGTATACAGTGCAGTTTGCGTAGAAATAGTCCTGCTGAGCAGGCGTCATGTCCTTCAGCCAGTCCTCGTCCTCATTGGCTAGCACAATAGTTGAAATGCTTCTTGATGCGACCTTCTTCCTTTTGCCGTACTTCGGGTTTACAATGTAATCCTTCTGGCAGCCAATTAACTGCTTCCAGCAAGGACAGTATTTGAAAGGTATATCATCAATTACGTTGACGACTGCCTCTTCGTCATAAGAGGTCCAGGCTACATTGTTTTGCCAGTAATTATGTCTTCCCAGGCTTCTAGCCCAAGATGACTTTCCTGTCCTTGTTGGGCCGAGGATGTAGAGGCTTTGCTTTCTTGTGGCTGTAGAGTTCTGGATGTTGATGACATCCATTCAAGGTCAGATATTGCATCTTGTAAGGTGAGGCAGTTAGGATTTGCAAGCATGTAGGCATTTGGACTCACCTGGTAGAGATTGGTGTTCAACCAGTCTTCTATCGATGTCATGTTTAGTAAATCTGGTTGTGACGGAGGATGTGGACTGGTGTATATTTCATGTGTCTCAGGGAACAGTTTGTTGGCTGAATACTCAAAGTATTGCAGCTTGGTTGCCCACTCGTAGGGGAGTGCCTTCTGAAGCATGGAAAGGTACTCTTGCTTTGAGGTGGAGTGCTCAATGATATCTCTAACGATATCATCCTTGGAAGGTTTAGGCTGTTTTGGCTCAGTCGAAGCTCCAAGAAAAGTTTTTTTTCTTGGGATAAATGTACCTTTCTCCCAAGTATTGACTGGGTTCTTCAGGATGTACTCACGTACCTTGTCAGAGCTCTTTGCACTCTGAATGTTAGGATGAAATCCAGAGATGTCGAAGAACCTCTGGTTGCTTGTGTAAACTGGCTTGACGCTCTGTGCTAGGGCGTGTAGATGCCAGTCTCCATCTTCATGTGTTTCTCGACTTACAAGGATGTAAGCAGGATTCCATGGCGCAATGAGGCTCCATAGTTCCAAACCTACAGCCTCTGGCTCTAAGTTGCAGTGTGGGTATGTGAGGAAGGTGTTGACGTTGCGATGCTTGAATCTACGGCTAGGATTAGTGCTCTCATCTGATCCTACCGCTTCCATTGAGCTGCCTGTGCGGATTTGGAGCCTCAGAGAACTCTCCTACAGATTTGCGTTTTAGAATACCGCACTGCCTTGCGGCTTTTATAGACTTGTTGCTGGGCCGGGCCTCCATTTTTTGGTGGGCCGGAATGAGAAAGCGCAAATCTAATATT
Gene Information
|
NCBI Accession
|
YP_009325923.1
|
|
Location
|
119-463 |
|
Protein Name
|
movement protein |
|
Coding Region
|
ATGTGGGATCGCACTATGGAGGGCTTTTATCAAGCACCTCCTCTTTTGCCTTTGGGTGTTCGGCCTCAGGTTGCTGCTGCAGCTCCTTACAGCGGAAGTCTGCCGTGGAGTCGCGTCGGTGAGGTTGCTATTTTCACCTTTGTTGCAGTGCTAGGGCTGTACCTGCTGTGGCTTTGGGTGTTGCGAGATCTTTTCTTTGTTGTTAAGGCTCAGCGAGGTCGATCTACGGAGGAGCTGCACTTTGGGCCCACTGAGGTCCCTTCAGTACCCTCTGCAAGAGTAGATCTGTCGGCGCCTCCTGTAGGGCCTTCCGGTACAGCCCCGCCGCGCCCGTTCCTAGGGTAG |
|
Protein Sequence
|
MWDRTMEGFYQAPPLLPLGVRPQVAAAAPYSGSLPWSRVGEVAIFTFVAVLGLYLLWLWVLRDLFFVVKAQRGRSTEELHFGPTEVPSVPSARVDLSAPPVGPSGTAPPRPFLG |
|
NCBI Accession
|
YP_009325924.1
|
|
Location
|
478-1224 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCATCTTCCGGTGCGAAACGCAAGAGGTCCGATGAGGGATCTTGGTCGAAGCGTAAGTCTGGTAAGAAGCAGCCGAGAGTGTCCTCCTCTCGTCGCGCTGGCCCTGCCCGAGGGCCTCGTCCTGCTCTTCAGATCGCCAACTATCAGGCGGCGGGCACCACTATGGTAACTGTCCCTTCGGGGGGCGTTTGTGAGTTGCTTGCTACCTATGCCCGAGGTTCTGATGAGGGCAACCGTCACACCAACGAGACTGTGACGTACAAGGTCGCTATGGATTACCACTTCGTGCTTACAGCAGCTGCGTGCAGGTACTCGTCCATCGGTGTTGGGGTCGCGTGGTTGGTGTATGACGCACAGCCCACGGGCAACGCCCCCCAGGTTACAGATATATTTCCGCATCCGGATTCTCTGGTTGCGTTCCCGTATACTTGGAAGGTCGGCAGGGAAGTGTGTCATCGCTTTGTGGTTAAGAGGCGGTGGACTTTCACGATGGAATCAGACGGGAGGATTGGCTCTGACATACCTCGCTCGACGGATGCTTGGCCGCCCTGCAAGCGGAGTATTTACTTCCACAAGTTTGTGACCGGACTCGGTGTAAAAACGGAGTGGAAGAATGTAGCGGACGGAGGAGTCGGTGCCATTAAGAAGGGTGCCCTGTATTTTGTAATTGCCCCTGGCAATGGTCAGGAATTTACCGTGCATGGAAATGCACGGTTGTACTTCAAGTCTGTTGGGAACCAGTGA |
|
Protein Sequence
|
MSSSGAKRKRSDEGSWSKRKSGKKQPRVSSSRRAGPARGPRPALQIANYQAAGTTMVTVPSGGVCELLATYARGSDEGNRHTNETVTYKVAMDYHFVLTAAACRYSSIGVGVAWLVYDAQPTGNAPQVTDIFPHPDSLVAFPYTWKVGREVCHRFVVKRRWTFTMESDGRIGSDIPRSTDAWPPCKRSIYFHKFVTGLGVKTEWKNVADGGVGAIKKGALYFVIAPGNGQEFTVHGNARLYFKSVGNQ |
|
NCBI Accession
|
YP_009325925.1
|
|
Location
|
1422-1856,1949-2605 |
|
Protein Name
|
Rep-associated protein |
|
Coding Region
|
ATGGAAGCGGTAGGATCAGATGAGAGCACTAATCCTAGCCGTAGATTCAAGCATCGCAACGTCAACACCTTCCTCACATACCCACACTGCAACTTAGAGCCAGAGGCTGTAGGTTTGGAACTATGGAGCCTCATTGCGCCATGGAATCCTGCTTACATCCTTGTAAGTCGAGAAACACATGAAGATGGAGACTGGCATCTACACGCCCTAGCACAGAGCGTCAAGCCAGTTTACACAAGCAACCAGAGGTTCTTCGACATCTCTGGATTTCATCCTAACATTCAGAGTGCAAAGAGCTCTGACAAGGTACGTGAGTACATCCTGAAGAACCCAGTCAATACTTGGGAGAAAGGTACATTTATCCCAAGAAAAAAAACTTTTCTTGGAGCTTCGACTGAGCCAAAACAGCCTAAACCTTCCAAGGATGATATCGTTAGAGATATCATTGAGCACTCCACCTCAAAGCAAGAGTACCTTTCCATGCTTCAGAAGGCACTCCCCTACGAGTGGGCAACCAAGCTGCAATACTTTGAGTATTCAGCCAACAAACTGTTCCCTGAGACACATGAAATATACACCAGTCCACATCCTCCGTCACAACCAGATTTACTAAACATGACATCGATAGAAGACTGGTTGAACACCAATCTCTACCAGAACTCTACAGCCACAAGAAAGCAAAGCCTCTACATCCTCGGCCCAACAAGGACAGGAAAGTCATCTTGGGCTAGAAGCCTGGGAAGACATAATTACTGGCAAAACAATGTAGCCTGGACCTCTTATGACGAAGAGGCAGTCGTCAACGTAATTGATGATATACCTTTCAAATACTGTCCTTGCTGGAAGCAGTTAATTGGCTGCCAGAAGGATTACATTGTAAACCCGAAGTACGGCAAAAGGAAGAAGGTCGCATCAAGAAGCATTTCAACTATTGTGCTAGCCAATGAGGACGAGGACTGGCTGAAGGACATGACGCCTGCTCAGCAGGACTATTTCTACGCAAACTGCACTGTATACATCATGGAACCGGGTGAACGGTTCTTTGGCCGGCCAGCGGTGTCAGCTACAGCCCATCCTTCTGTCGAAGTCTGA |
|
Protein Sequence
|
MEAVGSDESTNPSRRFKHRNVNTFLTYPHCNLEPEAVGLELWSLIAPWNPAYILVSRETHEDGDWHLHALAQSVKPVYTSNQRFFDISGFHPNIQSAKSSDKVREYILKNPVNTWEKGTFIPRKKTFLGASTEPKQPKPSKDDIVRDIIEHSTSKQEYLSMLQKALPYEWATKLQYFEYSANKLFPETHEIYTSPHPPSQPDLLNMTSIEDWLNTNLYQNSTATRKQSLYILGPTRTGKSSWARSLGRHNYWQNNVAWTSYDEEAVVNVIDDIPFKYCPCWKQLIGCQKDYIVNPKYGKRKKVASRSISTIVLANEDEDWLKDMTPAQQDYFYANCTVYIMEPGERFFGRPAVSATAHPSVEV |
|
NCBI Accession
|
YP_009325926.1
|
|
Location
|
1422-1877 |
|
Protein Name
|
RepB |
|
Coding Region
|
ATGGATGTCATCAACATCCAGAACTCTACAGCCACAAGAAAGCAAAGCCTCTACATCCTCGGCCCAACAAGGACAGGAAAGTCATCTTGGGCTAGAAGCCTGGGAAGACATAATTACTGGCAAAACAATGTAGCCTGGACCTCTTATGACGAAGAGGCAGTCGTCAACGTAATTGATGATATACCTTTCAAATACTGTCCTTGCTGGAAGCAGTTAATTGGCTGCCAGAAGGATTACATTGTAAACCCGAAGTACGGCAAAAGGAAGAAGGTCGCATCAAGAAGCATTTCAACTATTGTGCTAGCCAATGAGGACGAGGACTGGCTGAAGGACATGACGCCTGCTCAGCAGGACTATTTCTACGCAAACTGCACTGTATACATCATGGAACCGGGTGAACGGTTCTTTGGCCGGCCAGCGGTGTCAGCTACAGCCCATCCTTCTGTCGAAGTCTGA |
|
Protein Sequence
|
MDVINIQNSTATRKQSLYILGPTRTGKSSWARSLGRHNYWQNNVAWTSYDEEAVVNVIDDIPFKYCPCWKQLIGCQKDYIVNPKYGKRKKVASRSISTIVLANEDEDWLKDMTPAQQDYFYANCTVYIMEPGERFFGRPAVSATAHPSVEV |
|
NCBI Accession
|
YP_009325927.1
|
|
Location
|
1745-2605 |
|
Protein Name
|
RepA |
|
Coding Region
|
ATGGAAGCGGTAGGATCAGATGAGAGCACTAATCCTAGCCGTAGATTCAAGCATCGCAACGTCAACACCTTCCTCACATACCCACACTGCAACTTAGAGCCAGAGGCTGTAGGTTTGGAACTATGGAGCCTCATTGCGCCATGGAATCCTGCTTACATCCTTGTAAGTCGAGAAACACATGAAGATGGAGACTGGCATCTACACGCCCTAGCACAGAGCGTCAAGCCAGTTTACACAAGCAACCAGAGGTTCTTCGACATCTCTGGATTTCATCCTAACATTCAGAGTGCAAAGAGCTCTGACAAGGTACGTGAGTACATCCTGAAGAACCCAGTCAATACTTGGGAGAAAGGTACATTTATCCCAAGAAAAAAAACTTTTCTTGGAGCTTCGACTGAGCCAAAACAGCCTAAACCTTCCAAGGATGATATCGTTAGAGATATCATTGAGCACTCCACCTCAAAGCAAGAGTACCTTTCCATGCTTCAGAAGGCACTCCCCTACGAGTGGGCAACCAAGCTGCAATACTTTGAGTATTCAGCCAACAAACTGTTCCCTGAGACACATGAAATATACACCAGTCCACATCCTCCGTCACAACCAGATTTACTAAACATGACATCGATAGAAGACTGGTTGAACACCAATCTCTACCAGGTGAGTCCAAATGCCTACATGCTTGCAAATCCTAACTGCCTCACCTTACAAGATGCAATATCTGACCTTGAATGGATGTCATCAACATCCAGAACTCTACAGCCACAAGAAAGCAAAGCCTCTACATCCTCGGCCCAACAAGGACAGGAAAGTCATCTTGGGCTAGAAGCCTGGGAAGACATAATTACTGGCAAAACAATGTAG |
|
Protein Sequence
|
MEAVGSDESTNPSRRFKHRNVNTFLTYPHCNLEPEAVGLELWSLIAPWNPAYILVSRETHEDGDWHLHALAQSVKPVYTSNQRFFDISGFHPNIQSAKSSDKVREYILKNPVNTWEKGTFIPRKKTFLGASTEPKQPKPSKDDIVRDIIEHSTSKQEYLSMLQKALPYEWATKLQYFEYSANKLFPETHEIYTSPHPPSQPDLLNMTSIEDWLNTNLYQVSPNAYMLANPNCLTLQDAISDLEWMSSTSRTLQPQESKASTSSAQQGQESHLGLEAWEDIITGKTM |