Sugarcane chlorotic streak virus
Basic Information
| Genus | Mastrevirus |
|---|---|
| NCBI Assembly | GCF_001891015.1 |
| Isolate | Nigeria |
| Release date | 2016/12/8 |
| Submitter | Yahaya,A., Dangora,D.B., Alegbejo,M.D., Kumar,P.L., Alabi,O.J. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_032004
Gene Information
| NCBI Accession | YP_009325923.1 |
|---|---|
| Location | 119-463 |
| Protein Name | movement protein |
| Coding Region | ATGTGGGATCGCACTATGGAGGGCTTTTATCAAGCACCTCCTCTTTTGCCTTTGGGTGTTCGGCCTCAGGTTGCTGCTGCAGCTCCTTACAGCGGAAGTCTGCCGTGGAGTCGCGTCGGTGAGGTTGCTATTTTCACCTTTGTTGCAGTGCTAGGGCTGTACCTGCTGTGGCTTTGGGTGTTGCGAGATCTTTTCTTTGTTGTTAAGGCTCAGCGAGGTCGATCTACGGAGGAGCTGCACTTTGGGCCCACTGAGGTCCCTTCAGTACCCTCTGCAAGAGTAGATCTGTCGGCGCCTCCTGTAGGGCCTTCCGGTACAGCCCCGCCGCGCCCGTTCCTAGGGTAG |
| Protein Sequence | MWDRTMEGFYQAPPLLPLGVRPQVAAAAPYSGSLPWSRVGEVAIFTFVAVLGLYLLWLWVLRDLFFVVKAQRGRSTEELHFGPTEVPSVPSARVDLSAPPVGPSGTAPPRPFLG |
| NCBI Accession | YP_009325924.1 |
|---|---|
| Location | 478-1224 |
| Protein Name | coat protein |
| Coding Region | ATGTCATCTTCCGGTGCGAAACGCAAGAGGTCCGATGAGGGATCTTGGTCGAAGCGTAAGTCTGGTAAGAAGCAGCCGAGAGTGTCCTCCTCTCGTCGCGCTGGCCCTGCCCGAGGGCCTCGTCCTGCTCTTCAGATCGCCAACTATCAGGCGGCGGGCACCACTATGGTAACTGTCCCTTCGGGGGGCGTTTGTGAGTTGCTTGCTACCTATGCCCGAGGTTCTGATGAGGGCAACCGTCACACCAACGAGACTGTGACGTACAAGGTCGCTATGGATTACCACTTCGTGCTTACAGCAGCTGCGTGCAGGTACTCGTCCATCGGTGTTGGGGTCGCGTGGTTGGTGTATGACGCACAGCCCACGGGCAACGCCCCCCAGGTTACAGATATATTTCCGCATCCGGATTCTCTGGTTGCGTTCCCGTATACTTGGAAGGTCGGCAGGGAAGTGTGTCATCGCTTTGTGGTTAAGAGGCGGTGGACTTTCACGATGGAATCAGACGGGAGGATTGGCTCTGACATACCTCGCTCGACGGATGCTTGGCCGCCCTGCAAGCGGAGTATTTACTTCCACAAGTTTGTGACCGGACTCGGTGTAAAAACGGAGTGGAAGAATGTAGCGGACGGAGGAGTCGGTGCCATTAAGAAGGGTGCCCTGTATTTTGTAATTGCCCCTGGCAATGGTCAGGAATTTACCGTGCATGGAAATGCACGGTTGTACTTCAAGTCTGTTGGGAACCAGTGA |
| Protein Sequence | MSSSGAKRKRSDEGSWSKRKSGKKQPRVSSSRRAGPARGPRPALQIANYQAAGTTMVTVPSGGVCELLATYARGSDEGNRHTNETVTYKVAMDYHFVLTAAACRYSSIGVGVAWLVYDAQPTGNAPQVTDIFPHPDSLVAFPYTWKVGREVCHRFVVKRRWTFTMESDGRIGSDIPRSTDAWPPCKRSIYFHKFVTGLGVKTEWKNVADGGVGAIKKGALYFVIAPGNGQEFTVHGNARLYFKSVGNQ |
| NCBI Accession | YP_009325925.1 |
|---|---|
| Location | 1422-1856,1949-2605 |
| Protein Name | Rep-associated protein |
| Coding Region | ATGGAAGCGGTAGGATCAGATGAGAGCACTAATCCTAGCCGTAGATTCAAGCATCGCAACGTCAACACCTTCCTCACATACCCACACTGCAACTTAGAGCCAGAGGCTGTAGGTTTGGAACTATGGAGCCTCATTGCGCCATGGAATCCTGCTTACATCCTTGTAAGTCGAGAAACACATGAAGATGGAGACTGGCATCTACACGCCCTAGCACAGAGCGTCAAGCCAGTTTACACAAGCAACCAGAGGTTCTTCGACATCTCTGGATTTCATCCTAACATTCAGAGTGCAAAGAGCTCTGACAAGGTACGTGAGTACATCCTGAAGAACCCAGTCAATACTTGGGAGAAAGGTACATTTATCCCAAGAAAAAAAACTTTTCTTGGAGCTTCGACTGAGCCAAAACAGCCTAAACCTTCCAAGGATGATATCGTTAGAGATATCATTGAGCACTCCACCTCAAAGCAAGAGTACCTTTCCATGCTTCAGAAGGCACTCCCCTACGAGTGGGCAACCAAGCTGCAATACTTTGAGTATTCAGCCAACAAACTGTTCCCTGAGACACATGAAATATACACCAGTCCACATCCTCCGTCACAACCAGATTTACTAAACATGACATCGATAGAAGACTGGTTGAACACCAATCTCTACCAGAACTCTACAGCCACAAGAAAGCAAAGCCTCTACATCCTCGGCCCAACAAGGACAGGAAAGTCATCTTGGGCTAGAAGCCTGGGAAGACATAATTACTGGCAAAACAATGTAGCCTGGACCTCTTATGACGAAGAGGCAGTCGTCAACGTAATTGATGATATACCTTTCAAATACTGTCCTTGCTGGAAGCAGTTAATTGGCTGCCAGAAGGATTACATTGTAAACCCGAAGTACGGCAAAAGGAAGAAGGTCGCATCAAGAAGCATTTCAACTATTGTGCTAGCCAATGAGGACGAGGACTGGCTGAAGGACATGACGCCTGCTCAGCAGGACTATTTCTACGCAAACTGCACTGTATACATCATGGAACCGGGTGAACGGTTCTTTGGCCGGCCAGCGGTGTCAGCTACAGCCCATCCTTCTGTCGAAGTCTGA |
| Protein Sequence | MEAVGSDESTNPSRRFKHRNVNTFLTYPHCNLEPEAVGLELWSLIAPWNPAYILVSRETHEDGDWHLHALAQSVKPVYTSNQRFFDISGFHPNIQSAKSSDKVREYILKNPVNTWEKGTFIPRKKTFLGASTEPKQPKPSKDDIVRDIIEHSTSKQEYLSMLQKALPYEWATKLQYFEYSANKLFPETHEIYTSPHPPSQPDLLNMTSIEDWLNTNLYQNSTATRKQSLYILGPTRTGKSSWARSLGRHNYWQNNVAWTSYDEEAVVNVIDDIPFKYCPCWKQLIGCQKDYIVNPKYGKRKKVASRSISTIVLANEDEDWLKDMTPAQQDYFYANCTVYIMEPGERFFGRPAVSATAHPSVEV |
| NCBI Accession | YP_009325926.1 |
|---|---|
| Location | 1422-1877 |
| Protein Name | RepB |
| Coding Region | ATGGATGTCATCAACATCCAGAACTCTACAGCCACAAGAAAGCAAAGCCTCTACATCCTCGGCCCAACAAGGACAGGAAAGTCATCTTGGGCTAGAAGCCTGGGAAGACATAATTACTGGCAAAACAATGTAGCCTGGACCTCTTATGACGAAGAGGCAGTCGTCAACGTAATTGATGATATACCTTTCAAATACTGTCCTTGCTGGAAGCAGTTAATTGGCTGCCAGAAGGATTACATTGTAAACCCGAAGTACGGCAAAAGGAAGAAGGTCGCATCAAGAAGCATTTCAACTATTGTGCTAGCCAATGAGGACGAGGACTGGCTGAAGGACATGACGCCTGCTCAGCAGGACTATTTCTACGCAAACTGCACTGTATACATCATGGAACCGGGTGAACGGTTCTTTGGCCGGCCAGCGGTGTCAGCTACAGCCCATCCTTCTGTCGAAGTCTGA |
| Protein Sequence | MDVINIQNSTATRKQSLYILGPTRTGKSSWARSLGRHNYWQNNVAWTSYDEEAVVNVIDDIPFKYCPCWKQLIGCQKDYIVNPKYGKRKKVASRSISTIVLANEDEDWLKDMTPAQQDYFYANCTVYIMEPGERFFGRPAVSATAHPSVEV |
| NCBI Accession | YP_009325927.1 |
|---|---|
| Location | 1745-2605 |
| Protein Name | RepA |
| Coding Region | ATGGAAGCGGTAGGATCAGATGAGAGCACTAATCCTAGCCGTAGATTCAAGCATCGCAACGTCAACACCTTCCTCACATACCCACACTGCAACTTAGAGCCAGAGGCTGTAGGTTTGGAACTATGGAGCCTCATTGCGCCATGGAATCCTGCTTACATCCTTGTAAGTCGAGAAACACATGAAGATGGAGACTGGCATCTACACGCCCTAGCACAGAGCGTCAAGCCAGTTTACACAAGCAACCAGAGGTTCTTCGACATCTCTGGATTTCATCCTAACATTCAGAGTGCAAAGAGCTCTGACAAGGTACGTGAGTACATCCTGAAGAACCCAGTCAATACTTGGGAGAAAGGTACATTTATCCCAAGAAAAAAAACTTTTCTTGGAGCTTCGACTGAGCCAAAACAGCCTAAACCTTCCAAGGATGATATCGTTAGAGATATCATTGAGCACTCCACCTCAAAGCAAGAGTACCTTTCCATGCTTCAGAAGGCACTCCCCTACGAGTGGGCAACCAAGCTGCAATACTTTGAGTATTCAGCCAACAAACTGTTCCCTGAGACACATGAAATATACACCAGTCCACATCCTCCGTCACAACCAGATTTACTAAACATGACATCGATAGAAGACTGGTTGAACACCAATCTCTACCAGGTGAGTCCAAATGCCTACATGCTTGCAAATCCTAACTGCCTCACCTTACAAGATGCAATATCTGACCTTGAATGGATGTCATCAACATCCAGAACTCTACAGCCACAAGAAAGCAAAGCCTCTACATCCTCGGCCCAACAAGGACAGGAAAGTCATCTTGGGCTAGAAGCCTGGGAAGACATAATTACTGGCAAAACAATGTAG |
| Protein Sequence | MEAVGSDESTNPSRRFKHRNVNTFLTYPHCNLEPEAVGLELWSLIAPWNPAYILVSRETHEDGDWHLHALAQSVKPVYTSNQRFFDISGFHPNIQSAKSSDKVREYILKNPVNTWEKGTFIPRKKTFLGASTEPKQPKPSKDDIVRDIIEHSTSKQEYLSMLQKALPYEWATKLQYFEYSANKLFPETHEIYTSPHPPSQPDLLNMTSIEDWLNTNLYQVSPNAYMLANPNCLTLQDAISDLEWMSSTSRTLQPQESKASTSSAQQGQESHLGLEAWEDIITGKTM |
References More References in PubMed
| 1 |
First Report of Maize chlorotic mottle virus Infecting Sugarcane (Saccharum officinarum). Wang Q, et al. Plant Dis. 2014 Apr;98(4):572. doi: 10.1094/PDIS-07-13-0727-PDN. PMID: 30708716 |
|---|---|
| 2 |
Yahaya A, et al. Arch Virol. 2017 Feb;162(2):597-602. doi: 10.1007/s00705-016-3148-5. Epub 2016 Nov 4. PMID: 27815694 |
| 3 |
First Report of Maize streak virus Field Infection of Sugarcane in South Africa. van Antwerpen T, et al. Plant Dis. 2008 Jun;92(6):982. doi: 10.1094/PDIS-92-6-0982A. PMID: 30769738 |
| 4 |
First Report of Banana Streak Virus Infecting Sugarcane and Arrowroot in Colombia. Reichel H, et al. Plant Dis. 1997 May;81(5):552. doi: 10.1094/PDIS.1997.81.5.552B. PMID: 30861948 |
| 5 |
Maize Lethal Necrosis: An Emerging, Synergistic Viral Disease. Redinbaugh MG, et al. Annu Rev Virol. 2018 Sep 29;5(1):301-322. doi: 10.1146/annurev-virology-092917-043413. Epub 2018 Jul 30. PMID: 30059641 |
| 6 |
Gao X, et al. ACS Omega. 2021 Jul 6;6(28):18008-18013. doi: 10.1021/acsomega.1c01767. eCollection 2021 Jul 20. PMID: 34308035 |
| 7 |
Awata LAO, et al. J Gen Mol Virol. 2019;9(1). doi: 10.5897/JGMV2019.0073. Epub 2019 Jun 30. PMID: 33381355 |
| 8 |
Borah BK, et al. Mol Plant Pathol. 2013 Oct;14(8):759-71. doi: 10.1111/mpp.12046. Epub 2013 Jun 13. PMID: 23763585 |
| 9 |
First Report of Maize chlorotic mottle virus and Maize Lethal Necrosis in Kenya. Wangai AW, et al. Plant Dis. 2012 Oct;96(10):1582. doi: 10.1094/PDIS-06-12-0576-PDN. PMID: 30727337 |
| 10 |
Maize lethal necrosis viruses and other maize viruses in Rwanda. Asiimwe T, et al. Plant Pathol. 2020 Apr;69(3):585-597. doi: 10.1111/ppa.13134. Epub 2020 Feb 3. PMID: 35874461 |