Sugarcane chlorotic streak virus


Basic Information

Genus Mastrevirus
NCBI Assembly GCF_001891015.1
Isolate Nigeria
Release date 2016/12/8
Submitter Yahaya,A., Dangora,D.B., Alegbejo,M.D., Kumar,P.L., Alabi,O.J.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_032004
ACCGCGCTTTCTCATGCGAGCCCGCTAGGGCGAGCGGTCCCCGTTGCTGGGTGGATTTGTCTTTCTAAAGGCTGCCAGTTTAAAATGCAGCCGGCGCCAAGGACTATAAGATGCTTGTATGTGGGATCGCACTATGGAGGGCTTTTATCAAGCACCTCCTCTTTTGCCTTTGGGTGTTCGGCCTCAGGTTGCTGCTGCAGCTCCTTACAGCGGAAGTCTGCCGTGGAGTCGCGTCGGTGAGGTTGCTATTTTCACCTTTGTTGCAGTGCTAGGGCTGTACCTGCTGTGGCTTTGGGTGTTGCGAGATCTTTTCTTTGTTGTTAAGGCTCAGCGAGGTCGATCTACGGAGGAGCTGCACTTTGGGCCCACTGAGGTCCCTTCAGTACCCTCTGCAAGAGTAGATCTGTCGGCGCCTCCTGTAGGGCCTTCCGGTACAGCCCCGCCGCGCCCGTTCCTAGGGTAGGCGTTGCCTGCAGCATGTCATCTTCCGGTGCGAAACGCAAGAGGTCCGATGAGGGATCTTGGTCGAAGCGTAAGTCTGGTAAGAAGCAGCCGAGAGTGTCCTCCTCTCGTCGCGCTGGCCCTGCCCGAGGGCCTCGTCCTGCTCTTCAGATCGCCAACTATCAGGCGGCGGGCACCACTATGGTAACTGTCCCTTCGGGGGGCGTTTGTGAGTTGCTTGCTACCTATGCCCGAGGTTCTGATGAGGGCAACCGTCACACCAACGAGACTGTGACGTACAAGGTCGCTATGGATTACCACTTCGTGCTTACAGCAGCTGCGTGCAGGTACTCGTCCATCGGTGTTGGGGTCGCGTGGTTGGTGTATGACGCACAGCCCACGGGCAACGCCCCCCAGGTTACAGATATATTTCCGCATCCGGATTCTCTGGTTGCGTTCCCGTATACTTGGAAGGTCGGCAGGGAAGTGTGTCATCGCTTTGTGGTTAAGAGGCGGTGGACTTTCACGATGGAATCAGACGGGAGGATTGGCTCTGACATACCTCGCTCGACGGATGCTTGGCCGCCCTGCAAGCGGAGTATTTACTTCCACAAGTTTGTGACCGGACTCGGTGTAAAAACGGAGTGGAAGAATGTAGCGGACGGAGGAGTCGGTGCCATTAAGAAGGGTGCCCTGTATTTTGTAATTGCCCCTGGCAATGGTCAGGAATTTACCGTGCATGGAAATGCACGGTTGTACTTCAAGTCTGTTGGGAACCAGTGATCTCCCGATATAATAAAAACATTTTTATTATTGTTTTGATCTTGGAACGCGGAGCGTTACATTACATTCAGAAGTCTGCCGATGGGCAGACATAAAATACAAACATTACACAACCGGCGGCCAGATCGTGGCGGCTAAGGGATAGCGAATGAAAAAAACACACTAAAAAAACTGACATTATTAAAATTGGTCGGCGCTCAGACTTCGACAGAAGGATGGGCTGTAGCTGACACCGCTGGCCGGCCAAAGAACCGTTCACCCGGTTCCATGATGTATACAGTGCAGTTTGCGTAGAAATAGTCCTGCTGAGCAGGCGTCATGTCCTTCAGCCAGTCCTCGTCCTCATTGGCTAGCACAATAGTTGAAATGCTTCTTGATGCGACCTTCTTCCTTTTGCCGTACTTCGGGTTTACAATGTAATCCTTCTGGCAGCCAATTAACTGCTTCCAGCAAGGACAGTATTTGAAAGGTATATCATCAATTACGTTGACGACTGCCTCTTCGTCATAAGAGGTCCAGGCTACATTGTTTTGCCAGTAATTATGTCTTCCCAGGCTTCTAGCCCAAGATGACTTTCCTGTCCTTGTTGGGCCGAGGATGTAGAGGCTTTGCTTTCTTGTGGCTGTAGAGTTCTGGATGTTGATGACATCCATTCAAGGTCAGATATTGCATCTTGTAAGGTGAGGCAGTTAGGATTTGCAAGCATGTAGGCATTTGGACTCACCTGGTAGAGATTGGTGTTCAACCAGTCTTCTATCGATGTCATGTTTAGTAAATCTGGTTGTGACGGAGGATGTGGACTGGTGTATATTTCATGTGTCTCAGGGAACAGTTTGTTGGCTGAATACTCAAAGTATTGCAGCTTGGTTGCCCACTCGTAGGGGAGTGCCTTCTGAAGCATGGAAAGGTACTCTTGCTTTGAGGTGGAGTGCTCAATGATATCTCTAACGATATCATCCTTGGAAGGTTTAGGCTGTTTTGGCTCAGTCGAAGCTCCAAGAAAAGTTTTTTTTCTTGGGATAAATGTACCTTTCTCCCAAGTATTGACTGGGTTCTTCAGGATGTACTCACGTACCTTGTCAGAGCTCTTTGCACTCTGAATGTTAGGATGAAATCCAGAGATGTCGAAGAACCTCTGGTTGCTTGTGTAAACTGGCTTGACGCTCTGTGCTAGGGCGTGTAGATGCCAGTCTCCATCTTCATGTGTTTCTCGACTTACAAGGATGTAAGCAGGATTCCATGGCGCAATGAGGCTCCATAGTTCCAAACCTACAGCCTCTGGCTCTAAGTTGCAGTGTGGGTATGTGAGGAAGGTGTTGACGTTGCGATGCTTGAATCTACGGCTAGGATTAGTGCTCTCATCTGATCCTACCGCTTCCATTGAGCTGCCTGTGCGGATTTGGAGCCTCAGAGAACTCTCCTACAGATTTGCGTTTTAGAATACCGCACTGCCTTGCGGCTTTTATAGACTTGTTGCTGGGCCGGGCCTCCATTTTTTGGTGGGCCGGAATGAGAAAGCGCAAATCTAATATT

Gene Information

NCBI Accession YP_009325923.1
Location 119-463
Protein Name movement protein
Coding Region ATGTGGGATCGCACTATGGAGGGCTTTTATCAAGCACCTCCTCTTTTGCCTTTGGGTGTTCGGCCTCAGGTTGCTGCTGCAGCTCCTTACAGCGGAAGTCTGCCGTGGAGTCGCGTCGGTGAGGTTGCTATTTTCACCTTTGTTGCAGTGCTAGGGCTGTACCTGCTGTGGCTTTGGGTGTTGCGAGATCTTTTCTTTGTTGTTAAGGCTCAGCGAGGTCGATCTACGGAGGAGCTGCACTTTGGGCCCACTGAGGTCCCTTCAGTACCCTCTGCAAGAGTAGATCTGTCGGCGCCTCCTGTAGGGCCTTCCGGTACAGCCCCGCCGCGCCCGTTCCTAGGGTAG
Protein Sequence MWDRTMEGFYQAPPLLPLGVRPQVAAAAPYSGSLPWSRVGEVAIFTFVAVLGLYLLWLWVLRDLFFVVKAQRGRSTEELHFGPTEVPSVPSARVDLSAPPVGPSGTAPPRPFLG

NCBI Accession YP_009325924.1
Location 478-1224
Protein Name coat protein
Coding Region ATGTCATCTTCCGGTGCGAAACGCAAGAGGTCCGATGAGGGATCTTGGTCGAAGCGTAAGTCTGGTAAGAAGCAGCCGAGAGTGTCCTCCTCTCGTCGCGCTGGCCCTGCCCGAGGGCCTCGTCCTGCTCTTCAGATCGCCAACTATCAGGCGGCGGGCACCACTATGGTAACTGTCCCTTCGGGGGGCGTTTGTGAGTTGCTTGCTACCTATGCCCGAGGTTCTGATGAGGGCAACCGTCACACCAACGAGACTGTGACGTACAAGGTCGCTATGGATTACCACTTCGTGCTTACAGCAGCTGCGTGCAGGTACTCGTCCATCGGTGTTGGGGTCGCGTGGTTGGTGTATGACGCACAGCCCACGGGCAACGCCCCCCAGGTTACAGATATATTTCCGCATCCGGATTCTCTGGTTGCGTTCCCGTATACTTGGAAGGTCGGCAGGGAAGTGTGTCATCGCTTTGTGGTTAAGAGGCGGTGGACTTTCACGATGGAATCAGACGGGAGGATTGGCTCTGACATACCTCGCTCGACGGATGCTTGGCCGCCCTGCAAGCGGAGTATTTACTTCCACAAGTTTGTGACCGGACTCGGTGTAAAAACGGAGTGGAAGAATGTAGCGGACGGAGGAGTCGGTGCCATTAAGAAGGGTGCCCTGTATTTTGTAATTGCCCCTGGCAATGGTCAGGAATTTACCGTGCATGGAAATGCACGGTTGTACTTCAAGTCTGTTGGGAACCAGTGA
Protein Sequence MSSSGAKRKRSDEGSWSKRKSGKKQPRVSSSRRAGPARGPRPALQIANYQAAGTTMVTVPSGGVCELLATYARGSDEGNRHTNETVTYKVAMDYHFVLTAAACRYSSIGVGVAWLVYDAQPTGNAPQVTDIFPHPDSLVAFPYTWKVGREVCHRFVVKRRWTFTMESDGRIGSDIPRSTDAWPPCKRSIYFHKFVTGLGVKTEWKNVADGGVGAIKKGALYFVIAPGNGQEFTVHGNARLYFKSVGNQ

NCBI Accession YP_009325925.1
Location 1422-1856,1949-2605
Protein Name Rep-associated protein
Coding Region ATGGAAGCGGTAGGATCAGATGAGAGCACTAATCCTAGCCGTAGATTCAAGCATCGCAACGTCAACACCTTCCTCACATACCCACACTGCAACTTAGAGCCAGAGGCTGTAGGTTTGGAACTATGGAGCCTCATTGCGCCATGGAATCCTGCTTACATCCTTGTAAGTCGAGAAACACATGAAGATGGAGACTGGCATCTACACGCCCTAGCACAGAGCGTCAAGCCAGTTTACACAAGCAACCAGAGGTTCTTCGACATCTCTGGATTTCATCCTAACATTCAGAGTGCAAAGAGCTCTGACAAGGTACGTGAGTACATCCTGAAGAACCCAGTCAATACTTGGGAGAAAGGTACATTTATCCCAAGAAAAAAAACTTTTCTTGGAGCTTCGACTGAGCCAAAACAGCCTAAACCTTCCAAGGATGATATCGTTAGAGATATCATTGAGCACTCCACCTCAAAGCAAGAGTACCTTTCCATGCTTCAGAAGGCACTCCCCTACGAGTGGGCAACCAAGCTGCAATACTTTGAGTATTCAGCCAACAAACTGTTCCCTGAGACACATGAAATATACACCAGTCCACATCCTCCGTCACAACCAGATTTACTAAACATGACATCGATAGAAGACTGGTTGAACACCAATCTCTACCAGAACTCTACAGCCACAAGAAAGCAAAGCCTCTACATCCTCGGCCCAACAAGGACAGGAAAGTCATCTTGGGCTAGAAGCCTGGGAAGACATAATTACTGGCAAAACAATGTAGCCTGGACCTCTTATGACGAAGAGGCAGTCGTCAACGTAATTGATGATATACCTTTCAAATACTGTCCTTGCTGGAAGCAGTTAATTGGCTGCCAGAAGGATTACATTGTAAACCCGAAGTACGGCAAAAGGAAGAAGGTCGCATCAAGAAGCATTTCAACTATTGTGCTAGCCAATGAGGACGAGGACTGGCTGAAGGACATGACGCCTGCTCAGCAGGACTATTTCTACGCAAACTGCACTGTATACATCATGGAACCGGGTGAACGGTTCTTTGGCCGGCCAGCGGTGTCAGCTACAGCCCATCCTTCTGTCGAAGTCTGA
Protein Sequence MEAVGSDESTNPSRRFKHRNVNTFLTYPHCNLEPEAVGLELWSLIAPWNPAYILVSRETHEDGDWHLHALAQSVKPVYTSNQRFFDISGFHPNIQSAKSSDKVREYILKNPVNTWEKGTFIPRKKTFLGASTEPKQPKPSKDDIVRDIIEHSTSKQEYLSMLQKALPYEWATKLQYFEYSANKLFPETHEIYTSPHPPSQPDLLNMTSIEDWLNTNLYQNSTATRKQSLYILGPTRTGKSSWARSLGRHNYWQNNVAWTSYDEEAVVNVIDDIPFKYCPCWKQLIGCQKDYIVNPKYGKRKKVASRSISTIVLANEDEDWLKDMTPAQQDYFYANCTVYIMEPGERFFGRPAVSATAHPSVEV

NCBI Accession YP_009325926.1
Location 1422-1877
Protein Name RepB
Coding Region ATGGATGTCATCAACATCCAGAACTCTACAGCCACAAGAAAGCAAAGCCTCTACATCCTCGGCCCAACAAGGACAGGAAAGTCATCTTGGGCTAGAAGCCTGGGAAGACATAATTACTGGCAAAACAATGTAGCCTGGACCTCTTATGACGAAGAGGCAGTCGTCAACGTAATTGATGATATACCTTTCAAATACTGTCCTTGCTGGAAGCAGTTAATTGGCTGCCAGAAGGATTACATTGTAAACCCGAAGTACGGCAAAAGGAAGAAGGTCGCATCAAGAAGCATTTCAACTATTGTGCTAGCCAATGAGGACGAGGACTGGCTGAAGGACATGACGCCTGCTCAGCAGGACTATTTCTACGCAAACTGCACTGTATACATCATGGAACCGGGTGAACGGTTCTTTGGCCGGCCAGCGGTGTCAGCTACAGCCCATCCTTCTGTCGAAGTCTGA
Protein Sequence MDVINIQNSTATRKQSLYILGPTRTGKSSWARSLGRHNYWQNNVAWTSYDEEAVVNVIDDIPFKYCPCWKQLIGCQKDYIVNPKYGKRKKVASRSISTIVLANEDEDWLKDMTPAQQDYFYANCTVYIMEPGERFFGRPAVSATAHPSVEV

NCBI Accession YP_009325927.1
Location 1745-2605
Protein Name RepA
Coding Region ATGGAAGCGGTAGGATCAGATGAGAGCACTAATCCTAGCCGTAGATTCAAGCATCGCAACGTCAACACCTTCCTCACATACCCACACTGCAACTTAGAGCCAGAGGCTGTAGGTTTGGAACTATGGAGCCTCATTGCGCCATGGAATCCTGCTTACATCCTTGTAAGTCGAGAAACACATGAAGATGGAGACTGGCATCTACACGCCCTAGCACAGAGCGTCAAGCCAGTTTACACAAGCAACCAGAGGTTCTTCGACATCTCTGGATTTCATCCTAACATTCAGAGTGCAAAGAGCTCTGACAAGGTACGTGAGTACATCCTGAAGAACCCAGTCAATACTTGGGAGAAAGGTACATTTATCCCAAGAAAAAAAACTTTTCTTGGAGCTTCGACTGAGCCAAAACAGCCTAAACCTTCCAAGGATGATATCGTTAGAGATATCATTGAGCACTCCACCTCAAAGCAAGAGTACCTTTCCATGCTTCAGAAGGCACTCCCCTACGAGTGGGCAACCAAGCTGCAATACTTTGAGTATTCAGCCAACAAACTGTTCCCTGAGACACATGAAATATACACCAGTCCACATCCTCCGTCACAACCAGATTTACTAAACATGACATCGATAGAAGACTGGTTGAACACCAATCTCTACCAGGTGAGTCCAAATGCCTACATGCTTGCAAATCCTAACTGCCTCACCTTACAAGATGCAATATCTGACCTTGAATGGATGTCATCAACATCCAGAACTCTACAGCCACAAGAAAGCAAAGCCTCTACATCCTCGGCCCAACAAGGACAGGAAAGTCATCTTGGGCTAGAAGCCTGGGAAGACATAATTACTGGCAAAACAATGTAG
Protein Sequence MEAVGSDESTNPSRRFKHRNVNTFLTYPHCNLEPEAVGLELWSLIAPWNPAYILVSRETHEDGDWHLHALAQSVKPVYTSNQRFFDISGFHPNIQSAKSSDKVREYILKNPVNTWEKGTFIPRKKTFLGASTEPKQPKPSKDDIVRDIIEHSTSKQEYLSMLQKALPYEWATKLQYFEYSANKLFPETHEIYTSPHPPSQPDLLNMTSIEDWLNTNLYQVSPNAYMLANPNCLTLQDAISDLEWMSSTSRTLQPQESKASTSSAQQGQESHLGLEAWEDIITGKTM

References More References in PubMed

1

First report of Sugarcane Streak Mosaic Virus (SCSMV) infecting sugarcane in Côte d'Ivoire.

Sorho F, et al.  Plant Dis. 2020 Aug 25. doi: 10.1094/PDIS-07-19-1398-PDN. Online ahead of print.

PMID: 32840438

2

First Report of Maize chlorotic mottle virus Infecting Sugarcane (Saccharum officinarum).

Wang Q, et al.  Plant Dis. 2014 Apr;98(4):572. doi: 10.1094/PDIS-07-13-0727-PDN.

PMID: 30708716

3

Identification and molecular characterization of a novel sugarcane streak mastrevirus and an isolate of the A-strain of maize streak virus from sugarcane in Nigeria.

Yahaya A, et al.  Arch Virol. 2017 Feb;162(2):597-602. doi: 10.1007/s00705-016-3148-5. Epub 2016 Nov 4.

PMID: 27815694

4

First Report of Maize streak virus Field Infection of Sugarcane in South Africa.

van Antwerpen T, et al.  Plant Dis. 2008 Jun;92(6):982. doi: 10.1094/PDIS-92-6-0982A.

PMID: 30769738

5

Maize Lethal Necrosis: An Emerging, Synergistic Viral Disease.

Redinbaugh MG, et al.  Annu Rev Virol. 2018 Sep 29;5(1):301-322. doi: 10.1146/annurev-virology-092917-043413. Epub 2018 Jul 30.

PMID: 30059641

6

First Report of Banana Streak Virus Infecting Sugarcane and Arrowroot in Colombia.

Reichel H, et al.  Plant Dis. 1997 May;81(5):552. doi: 10.1094/PDIS.1997.81.5.552B.

PMID: 30861948

7

Recombinase Polymerase Amplification Assay for Simultaneous Detection of Maize Chlorotic Mottle Virus and Sugarcane Mosaic Virus in Maize.

Gao X, et al.  ACS Omega. 2021 Jul 6;6(28):18008-18013. doi: 10.1021/acsomega.1c01767. eCollection 2021 Jul 20.

PMID: 34308035

8

Maize lethal necrosis and the molecular basis of variability in concentrations of the causal viruses in co-infected maize plant.

Awata LAO, et al.  J Gen Mol Virol. 2019;9(1). doi: 10.5897/JGMV2019.0073. Epub 2019 Jun 30.

PMID: 33381355

9

Bacilliform DNA-containing plant viruses in the tropics: commonalities within a genetically diverse group.

Borah BK, et al.  Mol Plant Pathol. 2013 Oct;14(8):759-71. doi: 10.1111/mpp.12046. Epub 2013 Jun 13.

PMID: 23763585

10

Maize streak virus: an old and complex 'emerging' pathogen.

Shepherd DN, et al.  Mol Plant Pathol. 2010 Jan;11(1):1-12. doi: 10.1111/j.1364-3703.2009.00568.x.

PMID: 20078771