Rice latent virus 2

Basic Information

Genus Mastrevirus
NCBI Assembly GCF_004130535.1
Isolate Australia
Release date 2019/2/12
Submitter Kraberger,S., Geering,A.D.W., Walters,M., Martin,D.P., Varsani,A.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_040537
ATGTGGATGGAAAGCGGACACCTACCGCAGGTAGGGTATCAGGTGCAACCTTCTCCGCCGGCCGTAACCTCGACGTTCGTTGGAAACGACGGCGCCTGGAGGTTTCTCGTTTTATTGACCGCTTGTTCTTGCCTAGCAGGGGCAGCCGTATTCGCATGCTGGCGCATGTGTGGTAAGGACTTGCTCCTGACCTTGAAGGCGAAGCGTAGCAGGACGATAACCGAGCTAGGTTTCGGCCAGACGCCTGAACAGCGTCGAGCTGGAACGAGTTCTCAACCAGTGGGCGTCATCGGCTAACGATCGAGGTGGAGTCTGGTCTTTTGGGTCTGGTCAGCGTCCCAGTTGGCCCTCTAGCCCGGCACGGATGCCGGCGAGGACTGGTAGCGCTCGTCGTAAACGGAAGGATGATTGGGCGTGGGATTCGGCCACTCGTCGCCGTGTTCGTCCGAGGACGTCTTATGTTCCCCGTGGTGGTCCGCGAGTTCGCAGGCCTAGCCTGCAGTATGTGAATCCGGGGTTACTTGGTTCCACCGCGGTACATGTGGCTGATACGAATGGGGAGGTTAGAATTATAACAGGATACTCGCGCGGGAGCGACGAGCAGTCGCGTCATACCAACGAGACTATAACGTACAAGTTATCACTGGACCTCTATGTCACGGTGGACACAGAGTGCCAGAAATATGTTGGTAAAGGCGTTGCGGTCGCATGGTTGGTCTACGATGCGCAGCCTACAGGAGAGATGCCGGCAGCATCGACAATATTCCCCCATGTTGCGGATATGGCTACTGCGCCCTGTACCTGGAAGGTGGGTAGGGAGGTCTGCCATCGTTTCGTGGTTAAGCGTAGATGGGTGATCACGCTTGAGACTAACGGGCGTGTAGCCGGTACGGTCTTTCAGGGTGCTAATGGTGTCCCACCATGTAATCGCACGGTGTACTTCCATAAGTTCTGCAAGAGACTCGGTGTCAGAACTGAGTGGAAGAACACCTCCGGTGGTTCGATCGGAGACATTAAGACGGGTGCCCCTGTACATAGTGTTCGCGGCAGGGAACCAGATTAATTACAGAGTTCAGGGGGTTGTAAGAAAGTACTTCAAGTCTGTGGGTAACCAGTAAAACGGTTACATGTAAAATAGTTTGTAATAAAATGTCAATTTTATTCATTACAATACAGGTGGCTGCGCTAAGCAGCTGTTTTGCAATACATACACACTTTACCCAATTATCCCTGGGCGGCGCGCGGCGATAAGGGAAAGGGGTAAACACTAAACACGAGACTGACCTTAGTTAACATCTTTCCGGCGCTGTTGCGCCGGTGTCTGATATAAAGCTGAAATTATATAGACTCATATTAAATATGATGCAGTTGCTCTCGAAGTACGAGAGCTGTTCAGCAGTCATTGCTTTAGGCCAGTCGTCGTCATCGTTAACGATGACAATTGAAGGGATTCCTCCTTTGATGAGCTTCTTTTTCCCGTATTTCGGATTAACGGTGTAATCCTTCTGAGCTCCGACGAGGGCCTTCCAGCAAGGACAGAACTTGAAGGGTATATCATCTATTATATTATATAGAGCTTCGGGATCATACATCCCGAAGTCTACGTTATTCTGGTAGTAATTGTGTCTGCCGAGGCTTCTAGCCCAAGTAGACTTTCCTGTCCTTGATGGTCCGCAGATGTAGAGGCTGATTGGTCTCGCCTGCTTGCAAAGCATGTATCATGTAGCCATCGTAGATCTGCCTCAGCGTCAGAATGAGGATGGAGCAACGAATATACCTGCGGGGTTACATGGTAGATGTTCTCGGCAGCCCATTCTGTGAGTGTTTCATGGCAATGAAACATGGAGTCATTGAACGGTGGTTCATATGTTACCGGTGGATCAGGAAATAGCTTCTGAGAAGCATACTCCCAGGCTTGCAGCCTGGCGCAGTAGTCGTACGGAAACCACTTCTTGACCCCGTTCATGTACTCCATCCTTGAGGTCGCCGAGCGTAGGATGTCAGCCATTATCTGGTCTTTAGTCATTCTTCGTCGCTTGTTGGCCAGCTCGGAGGAGGTGTTACCTCCCTCGGCCGAGCTGGAGGAATCCCCAGCAGCTCTCCTAATCGTCGTAGAAGGTCCAGCCTCTCCATTCCCAGTCGGAGGAACTCCGAATGATCCTCGGGGCCGAAAGGAGCCCTTATGCCATTCTCCTGTAGGATGTTTGAGAATATAAGCCAGTACAGCTTTAGGGTTTCTTGTACCTTGTATATTTGGATGATAATCCATATTATCAAAAAAACTTGAGTCATGTGTGCGAATGCGATGACGAGTCTGAGCAAGAGCATGGAGATGGGGAGTCCCATCTTTATGAAGCTCAGAAGCACATAAAACGCCGTAAGGCCTGAGCAGATTCCAGAGGAATAAGCCCATTGTATGAGGCTCTTGGCTACATCGTGGATAAGTGAGGAAGACATTTTTGTTCTGGAAGGCAAAGTTATGTGGTTGCTCAGATGCGGATTCAGTGTTGGTCATAGGGTTCCAACACTTAGCCGCAAAACCGAACTCCGGTGTTTTACTCTCTAGAACCCTCTTACAGGCGATACCCGAACGACCCAGGCTTGGGCCAATTTATAGTTGGCCGGGGTTTCTTTGCCGGCCCATACCGAGGCCAAAGGGGATCGCCACCGCATAATATTACAGCGATCCCCTTTGGGCCGAGGGGACATTCGTGCGCTCTGATTGTCCCCGAGGCCTTCGCAATTAAGCATCTACTTTAATAAAGTGATAGTGAAATTACGCGGTATTGCGTGTTATCCACGCCCTAGTGGACTACATAAGTGAGGTCTTTGGGCTTTGTTGG

Gene Information

NCBI Accession YP_009551798.1
Location 1-297
Protein Name movement protein
Coding Region ATGTGGATGGAAAGCGGACACCTACCGCAGGTAGGGTATCAGGTGCAACCTTCTCCGCCGGCCGTAACCTCGACGTTCGTTGGAAACGACGGCGCCTGGAGGTTTCTCGTTTTATTGACCGCTTGTTCTTGCCTAGCAGGGGCAGCCGTATTCGCATGCTGGCGCATGTGTGGTAAGGACTTGCTCCTGACCTTGAAGGCGAAGCGTAGCAGGACGATAACCGAGCTAGGTTTCGGCCAGACGCCTGAACAGCGTCGAGCTGGAACGAGTTCTCAACCAGTGGGCGTCATCGGCTAA
Protein Sequence MWMESGHLPQVGYQVQPSPPAVTSTFVGNDGAWRFLVLLTACSCLAGAAVFACWRMCGKDLLLTLKAKRSRTITELGFGQTPEQRRAGTSSQPVGVIG

NCBI Accession YP_009551799.1
Location 365-1063
Protein Name capsid protein
Coding Region ATGCCGGCGAGGACTGGTAGCGCTCGTCGTAAACGGAAGGATGATTGGGCGTGGGATTCGGCCACTCGTCGCCGTGTTCGTCCGAGGACGTCTTATGTTCCCCGTGGTGGTCCGCGAGTTCGCAGGCCTAGCCTGCAGTATGTGAATCCGGGGTTACTTGGTTCCACCGCGGTACATGTGGCTGATACGAATGGGGAGGTTAGAATTATAACAGGATACTCGCGCGGGAGCGACGAGCAGTCGCGTCATACCAACGAGACTATAACGTACAAGTTATCACTGGACCTCTATGTCACGGTGGACACAGAGTGCCAGAAATATGTTGGTAAAGGCGTTGCGGTCGCATGGTTGGTCTACGATGCGCAGCCTACAGGAGAGATGCCGGCAGCATCGACAATATTCCCCCATGTTGCGGATATGGCTACTGCGCCCTGTACCTGGAAGGTGGGTAGGGAGGTCTGCCATCGTTTCGTGGTTAAGCGTAGATGGGTGATCACGCTTGAGACTAACGGGCGTGTAGCCGGTACGGTCTTTCAGGGTGCTAATGGTGTCCCACCATGTAATCGCACGGTGTACTTCCATAAGTTCTGCAAGAGACTCGGTGTCAGAACTGAGTGGAAGAACACCTCCGGTGGTTCGATCGGAGACATTAAGACGGGTGCCCCTGTACATAGTGTTCGCGGCAGGGAACCAGATTAA
Protein Sequence MPARTGSARRKRKDDWAWDSATRRRVRPRTSYVPRGGPRVRRPSLQYVNPGLLGSTAVHVADTNGEVRIITGYSRGSDEQSRHTNETITYKLSLDLYVTVDTECQKYVGKGVAVAWLVYDAQPTGEMPAASTIFPHVADMATAPCTWKVGREVCHRFVVKRRWVITLETNGRVAGTVFQGANGVPPCNRTVYFHKFCKRLGVRTEWKNTSGGSIGDIKTGAPVHSVRGREPD

NCBI Accession YP_009551800.1
Location 1290-1700,1778-2515
Protein Name Rep
Coding Region ATGACCAACACTGAATCCGCATCTGAGCAACCACATAACTTTGCCTTCCAGAACAAAAATGTCTTCCTCACTTATCCACGATGTAGCCAAGAGCCTCATACAATGGGCTTATTCCTCTGGAATCTGCTCAGGCCTTACGGCGTTTTATGTGCTTCTGAGCTTCATAAAGATGGGACTCCCCATCTCCATGCTCTTGCTCAGACTCGTCATCGCATTCGCACACATGACTCAAGTTTTTTTGATAATATGGATTATCATCCAAATATACAAGGTACAAGAAACCCTAAAGCTGTACTGGCTTATATTCTCAAACATCCTACAGGAGAATGGCATAAGGGCTCCTTTCGGCCCCGAGGATCATTCGGAGTTCCTCCGACTGGGAATGGAGAGGCTGGACCTTCTACGACGATTAGGAGAGCTGCTGGGGATTCCTCCAGCTCGGCCGAGGGAGGTAACACCTCCTCCGAGCTGGCCAACAAGCGACGAAGAATGACTAAAGACCAGATAATGGCTGACATCCTACGCTCGGCGACCTCAAGGATGGAGTACATGAACGGGGTCAAGAAGTGGTTTCCGTACGACTACTGCGCCAGGCTGCAAGCCTGGGAGTATGCTTCTCAGAAGCTATTTCCTGATCCACCGGTAACATATGAACCACCGTTCAATGACTCCATGTTTCATTGCCATGAAACACTCACAGAATGGGCTGCCGAGAACATCTACCATGTAACCCCGCAGGCGAGACCAATCAGCCTCTACATCTGCGGACCATCAAGGACAGGAAAGTCTACTTGGGCTAGAAGCCTCGGCAGACACAATTACTACCAGAATAACGTAGACTTCGGGATGTATGATCCCGAAGCTCTATATAATATAATAGATGATATACCCTTCAAGTTCTGTCCTTGCTGGAAGGCCCTCGTCGGAGCTCAGAAGGATTACACCGTTAATCCGAAATACGGGAAAAAGAAGCTCATCAAAGGAGGAATCCCTTCAATTGTCATCGTTAACGATGACGACGACTGGCCTAAAGCAATGACTGCTGAACAGCTCTCGTACTTCGAGAGCAACTGCATCATATTTAATATGAGTCTATATAATTTCAGCTTTATATCAGACACCGGCGCAACAGCGCCGGAAAGATGTTAA
Protein Sequence MTNTESASEQPHNFAFQNKNVFLTYPRCSQEPHTMGLFLWNLLRPYGVLCASELHKDGTPHLHALAQTRHRIRTHDSSFFDNMDYHPNIQGTRNPKAVLAYILKHPTGEWHKGSFRPRGSFGVPPTGNGEAGPSTTIRRAAGDSSSSAEGGNTSSELANKRRRMTKDQIMADILRSATSRMEYMNGVKKWFPYDYCARLQAWEYASQKLFPDPPVTYEPPFNDSMFHCHETLTEWAAENIYHVTPQARPISLYICGPSRTGKSTWARSLGRHNYYQNNVDFGMYDPEALYNIIDDIPFKFCPCWKALVGAQKDYTVNPKYGKKKLIKGGIPSIVIVNDDDDWPKAMTAEQLSYFESNCIIFNMSLYNFSFISDTGATAPERC

NCBI Accession YP_009551801.1
Location 1601-2515
Protein Name RepA
Coding Region ATGACCAACACTGAATCCGCATCTGAGCAACCACATAACTTTGCCTTCCAGAACAAAAATGTCTTCCTCACTTATCCACGATGTAGCCAAGAGCCTCATACAATGGGCTTATTCCTCTGGAATCTGCTCAGGCCTTACGGCGTTTTATGTGCTTCTGAGCTTCATAAAGATGGGACTCCCCATCTCCATGCTCTTGCTCAGACTCGTCATCGCATTCGCACACATGACTCAAGTTTTTTTGATAATATGGATTATCATCCAAATATACAAGGTACAAGAAACCCTAAAGCTGTACTGGCTTATATTCTCAAACATCCTACAGGAGAATGGCATAAGGGCTCCTTTCGGCCCCGAGGATCATTCGGAGTTCCTCCGACTGGGAATGGAGAGGCTGGACCTTCTACGACGATTAGGAGAGCTGCTGGGGATTCCTCCAGCTCGGCCGAGGGAGGTAACACCTCCTCCGAGCTGGCCAACAAGCGACGAAGAATGACTAAAGACCAGATAATGGCTGACATCCTACGCTCGGCGACCTCAAGGATGGAGTACATGAACGGGGTCAAGAAGTGGTTTCCGTACGACTACTGCGCCAGGCTGCAAGCCTGGGAGTATGCTTCTCAGAAGCTATTTCCTGATCCACCGGTAACATATGAACCACCGTTCAATGACTCCATGTTTCATTGCCATGAAACACTCACAGAATGGGCTGCCGAGAACATCTACCATGTAACCCCGCAGGTATATTCGTTGCTCCATCCTCATTCTGACGCTGAGGCAGATCTACGATGGCTACATGATACATGCTTTGCAAGCAGGCGAGACCAATCAGCCTCTACATCTGCGGACCATCAAGGACAGGAAAGTCTACTTGGGCTAGAAGCCTCGGCAGACACAATTACTACCAGAATAACGTAG
Protein Sequence MTNTESASEQPHNFAFQNKNVFLTYPRCSQEPHTMGLFLWNLLRPYGVLCASELHKDGTPHLHALAQTRHRIRTHDSSFFDNMDYHPNIQGTRNPKAVLAYILKHPTGEWHKGSFRPRGSFGVPPTGNGEAGPSTTIRRAAGDSSSSAEGGNTSSELANKRRRMTKDQIMADILRSATSRMEYMNGVKKWFPYDYCARLQAWEYASQKLFPDPPVTYEPPFNDSMFHCHETLTEWAAENIYHVTPQVYSLLHPHSDAEADLRWLHDTCFASRRDQSASTSADHQGQESLLGLEASADTITTRIT

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