Rice latent virus 2
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_004130535.1 |
| Isolate |
Australia |
| Release date |
2019/2/12 |
| Submitter |
Kraberger,S., Geering,A.D.W., Walters,M., Martin,D.P., Varsani,A. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ATGTGGATGGAAAGCGGACACCTACCGCAGGTAGGGTATCAGGTGCAACCTTCTCCGCCGGCCGTAACCTCGACGTTCGTTGGAAACGACGGCGCCTGGAGGTTTCTCGTTTTATTGACCGCTTGTTCTTGCCTAGCAGGGGCAGCCGTATTCGCATGCTGGCGCATGTGTGGTAAGGACTTGCTCCTGACCTTGAAGGCGAAGCGTAGCAGGACGATAACCGAGCTAGGTTTCGGCCAGACGCCTGAACAGCGTCGAGCTGGAACGAGTTCTCAACCAGTGGGCGTCATCGGCTAACGATCGAGGTGGAGTCTGGTCTTTTGGGTCTGGTCAGCGTCCCAGTTGGCCCTCTAGCCCGGCACGGATGCCGGCGAGGACTGGTAGCGCTCGTCGTAAACGGAAGGATGATTGGGCGTGGGATTCGGCCACTCGTCGCCGTGTTCGTCCGAGGACGTCTTATGTTCCCCGTGGTGGTCCGCGAGTTCGCAGGCCTAGCCTGCAGTATGTGAATCCGGGGTTACTTGGTTCCACCGCGGTACATGTGGCTGATACGAATGGGGAGGTTAGAATTATAACAGGATACTCGCGCGGGAGCGACGAGCAGTCGCGTCATACCAACGAGACTATAACGTACAAGTTATCACTGGACCTCTATGTCACGGTGGACACAGAGTGCCAGAAATATGTTGGTAAAGGCGTTGCGGTCGCATGGTTGGTCTACGATGCGCAGCCTACAGGAGAGATGCCGGCAGCATCGACAATATTCCCCCATGTTGCGGATATGGCTACTGCGCCCTGTACCTGGAAGGTGGGTAGGGAGGTCTGCCATCGTTTCGTGGTTAAGCGTAGATGGGTGATCACGCTTGAGACTAACGGGCGTGTAGCCGGTACGGTCTTTCAGGGTGCTAATGGTGTCCCACCATGTAATCGCACGGTGTACTTCCATAAGTTCTGCAAGAGACTCGGTGTCAGAACTGAGTGGAAGAACACCTCCGGTGGTTCGATCGGAGACATTAAGACGGGTGCCCCTGTACATAGTGTTCGCGGCAGGGAACCAGATTAATTACAGAGTTCAGGGGGTTGTAAGAAAGTACTTCAAGTCTGTGGGTAACCAGTAAAACGGTTACATGTAAAATAGTTTGTAATAAAATGTCAATTTTATTCATTACAATACAGGTGGCTGCGCTAAGCAGCTGTTTTGCAATACATACACACTTTACCCAATTATCCCTGGGCGGCGCGCGGCGATAAGGGAAAGGGGTAAACACTAAACACGAGACTGACCTTAGTTAACATCTTTCCGGCGCTGTTGCGCCGGTGTCTGATATAAAGCTGAAATTATATAGACTCATATTAAATATGATGCAGTTGCTCTCGAAGTACGAGAGCTGTTCAGCAGTCATTGCTTTAGGCCAGTCGTCGTCATCGTTAACGATGACAATTGAAGGGATTCCTCCTTTGATGAGCTTCTTTTTCCCGTATTTCGGATTAACGGTGTAATCCTTCTGAGCTCCGACGAGGGCCTTCCAGCAAGGACAGAACTTGAAGGGTATATCATCTATTATATTATATAGAGCTTCGGGATCATACATCCCGAAGTCTACGTTATTCTGGTAGTAATTGTGTCTGCCGAGGCTTCTAGCCCAAGTAGACTTTCCTGTCCTTGATGGTCCGCAGATGTAGAGGCTGATTGGTCTCGCCTGCTTGCAAAGCATGTATCATGTAGCCATCGTAGATCTGCCTCAGCGTCAGAATGAGGATGGAGCAACGAATATACCTGCGGGGTTACATGGTAGATGTTCTCGGCAGCCCATTCTGTGAGTGTTTCATGGCAATGAAACATGGAGTCATTGAACGGTGGTTCATATGTTACCGGTGGATCAGGAAATAGCTTCTGAGAAGCATACTCCCAGGCTTGCAGCCTGGCGCAGTAGTCGTACGGAAACCACTTCTTGACCCCGTTCATGTACTCCATCCTTGAGGTCGCCGAGCGTAGGATGTCAGCCATTATCTGGTCTTTAGTCATTCTTCGTCGCTTGTTGGCCAGCTCGGAGGAGGTGTTACCTCCCTCGGCCGAGCTGGAGGAATCCCCAGCAGCTCTCCTAATCGTCGTAGAAGGTCCAGCCTCTCCATTCCCAGTCGGAGGAACTCCGAATGATCCTCGGGGCCGAAAGGAGCCCTTATGCCATTCTCCTGTAGGATGTTTGAGAATATAAGCCAGTACAGCTTTAGGGTTTCTTGTACCTTGTATATTTGGATGATAATCCATATTATCAAAAAAACTTGAGTCATGTGTGCGAATGCGATGACGAGTCTGAGCAAGAGCATGGAGATGGGGAGTCCCATCTTTATGAAGCTCAGAAGCACATAAAACGCCGTAAGGCCTGAGCAGATTCCAGAGGAATAAGCCCATTGTATGAGGCTCTTGGCTACATCGTGGATAAGTGAGGAAGACATTTTTGTTCTGGAAGGCAAAGTTATGTGGTTGCTCAGATGCGGATTCAGTGTTGGTCATAGGGTTCCAACACTTAGCCGCAAAACCGAACTCCGGTGTTTTACTCTCTAGAACCCTCTTACAGGCGATACCCGAACGACCCAGGCTTGGGCCAATTTATAGTTGGCCGGGGTTTCTTTGCCGGCCCATACCGAGGCCAAAGGGGATCGCCACCGCATAATATTACAGCGATCCCCTTTGGGCCGAGGGGACATTCGTGCGCTCTGATTGTCCCCGAGGCCTTCGCAATTAAGCATCTACTTTAATAAAGTGATAGTGAAATTACGCGGTATTGCGTGTTATCCACGCCCTAGTGGACTACATAAGTGAGGTCTTTGGGCTTTGTTGG
Gene Information
|
NCBI Accession
|
YP_009551798.1
|
|
Location
|
1-297 |
|
Protein Name
|
movement protein |
|
Coding Region
|
ATGTGGATGGAAAGCGGACACCTACCGCAGGTAGGGTATCAGGTGCAACCTTCTCCGCCGGCCGTAACCTCGACGTTCGTTGGAAACGACGGCGCCTGGAGGTTTCTCGTTTTATTGACCGCTTGTTCTTGCCTAGCAGGGGCAGCCGTATTCGCATGCTGGCGCATGTGTGGTAAGGACTTGCTCCTGACCTTGAAGGCGAAGCGTAGCAGGACGATAACCGAGCTAGGTTTCGGCCAGACGCCTGAACAGCGTCGAGCTGGAACGAGTTCTCAACCAGTGGGCGTCATCGGCTAA |
|
Protein Sequence
|
MWMESGHLPQVGYQVQPSPPAVTSTFVGNDGAWRFLVLLTACSCLAGAAVFACWRMCGKDLLLTLKAKRSRTITELGFGQTPEQRRAGTSSQPVGVIG |
|
NCBI Accession
|
YP_009551799.1
|
|
Location
|
365-1063 |
|
Protein Name
|
capsid protein |
|
Coding Region
|
ATGCCGGCGAGGACTGGTAGCGCTCGTCGTAAACGGAAGGATGATTGGGCGTGGGATTCGGCCACTCGTCGCCGTGTTCGTCCGAGGACGTCTTATGTTCCCCGTGGTGGTCCGCGAGTTCGCAGGCCTAGCCTGCAGTATGTGAATCCGGGGTTACTTGGTTCCACCGCGGTACATGTGGCTGATACGAATGGGGAGGTTAGAATTATAACAGGATACTCGCGCGGGAGCGACGAGCAGTCGCGTCATACCAACGAGACTATAACGTACAAGTTATCACTGGACCTCTATGTCACGGTGGACACAGAGTGCCAGAAATATGTTGGTAAAGGCGTTGCGGTCGCATGGTTGGTCTACGATGCGCAGCCTACAGGAGAGATGCCGGCAGCATCGACAATATTCCCCCATGTTGCGGATATGGCTACTGCGCCCTGTACCTGGAAGGTGGGTAGGGAGGTCTGCCATCGTTTCGTGGTTAAGCGTAGATGGGTGATCACGCTTGAGACTAACGGGCGTGTAGCCGGTACGGTCTTTCAGGGTGCTAATGGTGTCCCACCATGTAATCGCACGGTGTACTTCCATAAGTTCTGCAAGAGACTCGGTGTCAGAACTGAGTGGAAGAACACCTCCGGTGGTTCGATCGGAGACATTAAGACGGGTGCCCCTGTACATAGTGTTCGCGGCAGGGAACCAGATTAA |
|
Protein Sequence
|
MPARTGSARRKRKDDWAWDSATRRRVRPRTSYVPRGGPRVRRPSLQYVNPGLLGSTAVHVADTNGEVRIITGYSRGSDEQSRHTNETITYKLSLDLYVTVDTECQKYVGKGVAVAWLVYDAQPTGEMPAASTIFPHVADMATAPCTWKVGREVCHRFVVKRRWVITLETNGRVAGTVFQGANGVPPCNRTVYFHKFCKRLGVRTEWKNTSGGSIGDIKTGAPVHSVRGREPD |
|
NCBI Accession
|
YP_009551800.1
|
|
Location
|
1290-1700,1778-2515 |
|
Protein Name
|
Rep |
|
Coding Region
|
ATGACCAACACTGAATCCGCATCTGAGCAACCACATAACTTTGCCTTCCAGAACAAAAATGTCTTCCTCACTTATCCACGATGTAGCCAAGAGCCTCATACAATGGGCTTATTCCTCTGGAATCTGCTCAGGCCTTACGGCGTTTTATGTGCTTCTGAGCTTCATAAAGATGGGACTCCCCATCTCCATGCTCTTGCTCAGACTCGTCATCGCATTCGCACACATGACTCAAGTTTTTTTGATAATATGGATTATCATCCAAATATACAAGGTACAAGAAACCCTAAAGCTGTACTGGCTTATATTCTCAAACATCCTACAGGAGAATGGCATAAGGGCTCCTTTCGGCCCCGAGGATCATTCGGAGTTCCTCCGACTGGGAATGGAGAGGCTGGACCTTCTACGACGATTAGGAGAGCTGCTGGGGATTCCTCCAGCTCGGCCGAGGGAGGTAACACCTCCTCCGAGCTGGCCAACAAGCGACGAAGAATGACTAAAGACCAGATAATGGCTGACATCCTACGCTCGGCGACCTCAAGGATGGAGTACATGAACGGGGTCAAGAAGTGGTTTCCGTACGACTACTGCGCCAGGCTGCAAGCCTGGGAGTATGCTTCTCAGAAGCTATTTCCTGATCCACCGGTAACATATGAACCACCGTTCAATGACTCCATGTTTCATTGCCATGAAACACTCACAGAATGGGCTGCCGAGAACATCTACCATGTAACCCCGCAGGCGAGACCAATCAGCCTCTACATCTGCGGACCATCAAGGACAGGAAAGTCTACTTGGGCTAGAAGCCTCGGCAGACACAATTACTACCAGAATAACGTAGACTTCGGGATGTATGATCCCGAAGCTCTATATAATATAATAGATGATATACCCTTCAAGTTCTGTCCTTGCTGGAAGGCCCTCGTCGGAGCTCAGAAGGATTACACCGTTAATCCGAAATACGGGAAAAAGAAGCTCATCAAAGGAGGAATCCCTTCAATTGTCATCGTTAACGATGACGACGACTGGCCTAAAGCAATGACTGCTGAACAGCTCTCGTACTTCGAGAGCAACTGCATCATATTTAATATGAGTCTATATAATTTCAGCTTTATATCAGACACCGGCGCAACAGCGCCGGAAAGATGTTAA |
|
Protein Sequence
|
MTNTESASEQPHNFAFQNKNVFLTYPRCSQEPHTMGLFLWNLLRPYGVLCASELHKDGTPHLHALAQTRHRIRTHDSSFFDNMDYHPNIQGTRNPKAVLAYILKHPTGEWHKGSFRPRGSFGVPPTGNGEAGPSTTIRRAAGDSSSSAEGGNTSSELANKRRRMTKDQIMADILRSATSRMEYMNGVKKWFPYDYCARLQAWEYASQKLFPDPPVTYEPPFNDSMFHCHETLTEWAAENIYHVTPQARPISLYICGPSRTGKSTWARSLGRHNYYQNNVDFGMYDPEALYNIIDDIPFKFCPCWKALVGAQKDYTVNPKYGKKKLIKGGIPSIVIVNDDDDWPKAMTAEQLSYFESNCIIFNMSLYNFSFISDTGATAPERC |
|
NCBI Accession
|
YP_009551801.1
|
|
Location
|
1601-2515 |
|
Protein Name
|
RepA |
|
Coding Region
|
ATGACCAACACTGAATCCGCATCTGAGCAACCACATAACTTTGCCTTCCAGAACAAAAATGTCTTCCTCACTTATCCACGATGTAGCCAAGAGCCTCATACAATGGGCTTATTCCTCTGGAATCTGCTCAGGCCTTACGGCGTTTTATGTGCTTCTGAGCTTCATAAAGATGGGACTCCCCATCTCCATGCTCTTGCTCAGACTCGTCATCGCATTCGCACACATGACTCAAGTTTTTTTGATAATATGGATTATCATCCAAATATACAAGGTACAAGAAACCCTAAAGCTGTACTGGCTTATATTCTCAAACATCCTACAGGAGAATGGCATAAGGGCTCCTTTCGGCCCCGAGGATCATTCGGAGTTCCTCCGACTGGGAATGGAGAGGCTGGACCTTCTACGACGATTAGGAGAGCTGCTGGGGATTCCTCCAGCTCGGCCGAGGGAGGTAACACCTCCTCCGAGCTGGCCAACAAGCGACGAAGAATGACTAAAGACCAGATAATGGCTGACATCCTACGCTCGGCGACCTCAAGGATGGAGTACATGAACGGGGTCAAGAAGTGGTTTCCGTACGACTACTGCGCCAGGCTGCAAGCCTGGGAGTATGCTTCTCAGAAGCTATTTCCTGATCCACCGGTAACATATGAACCACCGTTCAATGACTCCATGTTTCATTGCCATGAAACACTCACAGAATGGGCTGCCGAGAACATCTACCATGTAACCCCGCAGGTATATTCGTTGCTCCATCCTCATTCTGACGCTGAGGCAGATCTACGATGGCTACATGATACATGCTTTGCAAGCAGGCGAGACCAATCAGCCTCTACATCTGCGGACCATCAAGGACAGGAAAGTCTACTTGGGCTAGAAGCCTCGGCAGACACAATTACTACCAGAATAACGTAG |
|
Protein Sequence
|
MTNTESASEQPHNFAFQNKNVFLTYPRCSQEPHTMGLFLWNLLRPYGVLCASELHKDGTPHLHALAQTRHRIRTHDSSFFDNMDYHPNIQGTRNPKAVLAYILKHPTGEWHKGSFRPRGSFGVPPTGNGEAGPSTTIRRAAGDSSSSAEGGNTSSELANKRRRMTKDQIMADILRSATSRMEYMNGVKKWFPYDYCARLQAWEYASQKLFPDPPVTYEPPFNDSMFHCHETLTEWAAENIYHVTPQVYSLLHPHSDAEADLRWLHDTCFASRRDQSASTSADHQGQESLLGLEASADTITTRIT |