Rice latent virus 2
Basic Information
| Genus | Mastrevirus |
|---|---|
| NCBI Assembly | GCF_004130535.1 |
| Isolate | Australia |
| Release date | 2019/2/12 |
| Submitter | Kraberger,S., Geering,A.D.W., Walters,M., Martin,D.P., Varsani,A. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_040537
Gene Information
| NCBI Accession | YP_009551798.1 |
|---|---|
| Location | 1-297 |
| Protein Name | movement protein |
| Coding Region | ATGTGGATGGAAAGCGGACACCTACCGCAGGTAGGGTATCAGGTGCAACCTTCTCCGCCGGCCGTAACCTCGACGTTCGTTGGAAACGACGGCGCCTGGAGGTTTCTCGTTTTATTGACCGCTTGTTCTTGCCTAGCAGGGGCAGCCGTATTCGCATGCTGGCGCATGTGTGGTAAGGACTTGCTCCTGACCTTGAAGGCGAAGCGTAGCAGGACGATAACCGAGCTAGGTTTCGGCCAGACGCCTGAACAGCGTCGAGCTGGAACGAGTTCTCAACCAGTGGGCGTCATCGGCTAA |
| Protein Sequence | MWMESGHLPQVGYQVQPSPPAVTSTFVGNDGAWRFLVLLTACSCLAGAAVFACWRMCGKDLLLTLKAKRSRTITELGFGQTPEQRRAGTSSQPVGVIG |
| NCBI Accession | YP_009551799.1 |
|---|---|
| Location | 365-1063 |
| Protein Name | capsid protein |
| Coding Region | ATGCCGGCGAGGACTGGTAGCGCTCGTCGTAAACGGAAGGATGATTGGGCGTGGGATTCGGCCACTCGTCGCCGTGTTCGTCCGAGGACGTCTTATGTTCCCCGTGGTGGTCCGCGAGTTCGCAGGCCTAGCCTGCAGTATGTGAATCCGGGGTTACTTGGTTCCACCGCGGTACATGTGGCTGATACGAATGGGGAGGTTAGAATTATAACAGGATACTCGCGCGGGAGCGACGAGCAGTCGCGTCATACCAACGAGACTATAACGTACAAGTTATCACTGGACCTCTATGTCACGGTGGACACAGAGTGCCAGAAATATGTTGGTAAAGGCGTTGCGGTCGCATGGTTGGTCTACGATGCGCAGCCTACAGGAGAGATGCCGGCAGCATCGACAATATTCCCCCATGTTGCGGATATGGCTACTGCGCCCTGTACCTGGAAGGTGGGTAGGGAGGTCTGCCATCGTTTCGTGGTTAAGCGTAGATGGGTGATCACGCTTGAGACTAACGGGCGTGTAGCCGGTACGGTCTTTCAGGGTGCTAATGGTGTCCCACCATGTAATCGCACGGTGTACTTCCATAAGTTCTGCAAGAGACTCGGTGTCAGAACTGAGTGGAAGAACACCTCCGGTGGTTCGATCGGAGACATTAAGACGGGTGCCCCTGTACATAGTGTTCGCGGCAGGGAACCAGATTAA |
| Protein Sequence | MPARTGSARRKRKDDWAWDSATRRRVRPRTSYVPRGGPRVRRPSLQYVNPGLLGSTAVHVADTNGEVRIITGYSRGSDEQSRHTNETITYKLSLDLYVTVDTECQKYVGKGVAVAWLVYDAQPTGEMPAASTIFPHVADMATAPCTWKVGREVCHRFVVKRRWVITLETNGRVAGTVFQGANGVPPCNRTVYFHKFCKRLGVRTEWKNTSGGSIGDIKTGAPVHSVRGREPD |
| NCBI Accession | YP_009551800.1 |
|---|---|
| Location | 1290-1700,1778-2515 |
| Protein Name | Rep |
| Coding Region | ATGACCAACACTGAATCCGCATCTGAGCAACCACATAACTTTGCCTTCCAGAACAAAAATGTCTTCCTCACTTATCCACGATGTAGCCAAGAGCCTCATACAATGGGCTTATTCCTCTGGAATCTGCTCAGGCCTTACGGCGTTTTATGTGCTTCTGAGCTTCATAAAGATGGGACTCCCCATCTCCATGCTCTTGCTCAGACTCGTCATCGCATTCGCACACATGACTCAAGTTTTTTTGATAATATGGATTATCATCCAAATATACAAGGTACAAGAAACCCTAAAGCTGTACTGGCTTATATTCTCAAACATCCTACAGGAGAATGGCATAAGGGCTCCTTTCGGCCCCGAGGATCATTCGGAGTTCCTCCGACTGGGAATGGAGAGGCTGGACCTTCTACGACGATTAGGAGAGCTGCTGGGGATTCCTCCAGCTCGGCCGAGGGAGGTAACACCTCCTCCGAGCTGGCCAACAAGCGACGAAGAATGACTAAAGACCAGATAATGGCTGACATCCTACGCTCGGCGACCTCAAGGATGGAGTACATGAACGGGGTCAAGAAGTGGTTTCCGTACGACTACTGCGCCAGGCTGCAAGCCTGGGAGTATGCTTCTCAGAAGCTATTTCCTGATCCACCGGTAACATATGAACCACCGTTCAATGACTCCATGTTTCATTGCCATGAAACACTCACAGAATGGGCTGCCGAGAACATCTACCATGTAACCCCGCAGGCGAGACCAATCAGCCTCTACATCTGCGGACCATCAAGGACAGGAAAGTCTACTTGGGCTAGAAGCCTCGGCAGACACAATTACTACCAGAATAACGTAGACTTCGGGATGTATGATCCCGAAGCTCTATATAATATAATAGATGATATACCCTTCAAGTTCTGTCCTTGCTGGAAGGCCCTCGTCGGAGCTCAGAAGGATTACACCGTTAATCCGAAATACGGGAAAAAGAAGCTCATCAAAGGAGGAATCCCTTCAATTGTCATCGTTAACGATGACGACGACTGGCCTAAAGCAATGACTGCTGAACAGCTCTCGTACTTCGAGAGCAACTGCATCATATTTAATATGAGTCTATATAATTTCAGCTTTATATCAGACACCGGCGCAACAGCGCCGGAAAGATGTTAA |
| Protein Sequence | MTNTESASEQPHNFAFQNKNVFLTYPRCSQEPHTMGLFLWNLLRPYGVLCASELHKDGTPHLHALAQTRHRIRTHDSSFFDNMDYHPNIQGTRNPKAVLAYILKHPTGEWHKGSFRPRGSFGVPPTGNGEAGPSTTIRRAAGDSSSSAEGGNTSSELANKRRRMTKDQIMADILRSATSRMEYMNGVKKWFPYDYCARLQAWEYASQKLFPDPPVTYEPPFNDSMFHCHETLTEWAAENIYHVTPQARPISLYICGPSRTGKSTWARSLGRHNYYQNNVDFGMYDPEALYNIIDDIPFKFCPCWKALVGAQKDYTVNPKYGKKKLIKGGIPSIVIVNDDDDWPKAMTAEQLSYFESNCIIFNMSLYNFSFISDTGATAPERC |
| NCBI Accession | YP_009551801.1 |
|---|---|
| Location | 1601-2515 |
| Protein Name | RepA |
| Coding Region | ATGACCAACACTGAATCCGCATCTGAGCAACCACATAACTTTGCCTTCCAGAACAAAAATGTCTTCCTCACTTATCCACGATGTAGCCAAGAGCCTCATACAATGGGCTTATTCCTCTGGAATCTGCTCAGGCCTTACGGCGTTTTATGTGCTTCTGAGCTTCATAAAGATGGGACTCCCCATCTCCATGCTCTTGCTCAGACTCGTCATCGCATTCGCACACATGACTCAAGTTTTTTTGATAATATGGATTATCATCCAAATATACAAGGTACAAGAAACCCTAAAGCTGTACTGGCTTATATTCTCAAACATCCTACAGGAGAATGGCATAAGGGCTCCTTTCGGCCCCGAGGATCATTCGGAGTTCCTCCGACTGGGAATGGAGAGGCTGGACCTTCTACGACGATTAGGAGAGCTGCTGGGGATTCCTCCAGCTCGGCCGAGGGAGGTAACACCTCCTCCGAGCTGGCCAACAAGCGACGAAGAATGACTAAAGACCAGATAATGGCTGACATCCTACGCTCGGCGACCTCAAGGATGGAGTACATGAACGGGGTCAAGAAGTGGTTTCCGTACGACTACTGCGCCAGGCTGCAAGCCTGGGAGTATGCTTCTCAGAAGCTATTTCCTGATCCACCGGTAACATATGAACCACCGTTCAATGACTCCATGTTTCATTGCCATGAAACACTCACAGAATGGGCTGCCGAGAACATCTACCATGTAACCCCGCAGGTATATTCGTTGCTCCATCCTCATTCTGACGCTGAGGCAGATCTACGATGGCTACATGATACATGCTTTGCAAGCAGGCGAGACCAATCAGCCTCTACATCTGCGGACCATCAAGGACAGGAAAGTCTACTTGGGCTAGAAGCCTCGGCAGACACAATTACTACCAGAATAACGTAG |
| Protein Sequence | MTNTESASEQPHNFAFQNKNVFLTYPRCSQEPHTMGLFLWNLLRPYGVLCASELHKDGTPHLHALAQTRHRIRTHDSSFFDNMDYHPNIQGTRNPKAVLAYILKHPTGEWHKGSFRPRGSFGVPPTGNGEAGPSTTIRRAAGDSSSSAEGGNTSSELANKRRRMTKDQIMADILRSATSRMEYMNGVKKWFPYDYCARLQAWEYASQKLFPDPPVTYEPPFNDSMFHCHETLTEWAAENIYHVTPQVYSLLHPHSDAEADLRWLHDTCFASRRDQSASTSADHQGQESLLGLEASADTITTRIT |
References More References in PubMed
| 1 |
Simultaneous Detection of Herpes Simplex Virus Type 1 Latent and Lytic Transcripts in Brain Tissue. Zhang S, et al. ASN Neuro. 2022 Jan-Dec;14:17590914211053505. doi: 10.1177/17590914211053505. PMID: 35164537 |
|---|---|
| 2 |
Cycluridine: A novel antiviral effective against flaviviruses. Galabov AS, et al. Antivir Chem Chemother. 2017 Aug;25(2):58-67. doi: 10.1177/2040206617723442. PMID: 28768435 |
| 3 |
Yang X, et al. Front Microbiol. 2017 Dec 11;8:2457. doi: 10.3389/fmicb.2017.02457. eCollection 2017. PMID: 29312171 |
| 4 |
Molecular characterization of a novel benyvirus infecting wheat in China. Guo J, et al. Arch Virol. 2023 Nov 6;168(12):284. doi: 10.1007/s00705-023-05912-5. PMID: 37930401 |
| 5 |
Cadenas GA, et al. Am J Community Psychol. 2025 Jun;75(3-4):224-236. doi: 10.1002/ajcp.12769. Epub 2024 Dec 25. PMID: 39720927 |
| 6 |
Hajano JU, et al. Virus Res. 2015 Oct 2;208:146-55. doi: 10.1016/j.virusres.2015.06.015. Epub 2015 Jun 23. PMID: 26116274 |
| 7 |
Stress-related immune suppression: health implications. Glaser R, et al. Brain Behav Immun. 1987 Mar;1(1):7-20. doi: 10.1016/0889-1591(87)90002-x. PMID: 2837297 |
| 8 |
Rice SA. Viruses. 2021 Nov 30;13(12):2395. doi: 10.3390/v13122395. PMID: 34960664 |
| 9 |
Molecular Characterization of a Novel Polerovirus Infecting Soybean in China. Xu T, et al. Viruses. 2022 Jun 29;14(7):1428. doi: 10.3390/v14071428. PMID: 35891408 |
| 10 |
Roles of CDKs in RNA polymerase II transcription of the HIV-1 genome. Rice AP. Transcription. 2019 Apr;10(2):111-117. doi: 10.1080/21541264.2018.1542254. Epub 2018 Nov 15. PMID: 30375919 |