Rice latent virus 1
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_004130515.1 |
| Isolate |
Australia |
| Release date |
2019/2/12 |
| Submitter |
Kraberger,S., Geering,A.D.W., Walters,M., Martin,D.P., Varsani,A. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ATGGCGAATTTCTCTATCCTCACTGACTCGGCCTACCCTACGGTTCCTTCGCCTCCAAGTCAAGCGGTGTCGGCCGGGTTTGAAGGTGCTCTGACGACGCTTTTCCTCGTCGTTATCGGCTCTCTACTGTTCGTTGGCGTGTTCTACCTCGGCTGGGTTCTCTGCGTGAAGGACCTCGTCCTCACCTTCAAGGCCCGCCGCCAAAGGAGGACCGAGGAGATCGGTTTCGGGAACACTCCCGCGAGGGTTGATGCCAGGGGGGTCTAAGAGGGCCTCGTCCGGGAAAGATGGTTCGAGGCCGAAGCGTCGCAAGGGAGAGCCCGAGGCCGCCTTTAGGGCCCGCATATTGGGCTGGGCCTCTTCCCAGTTCGGGAGGAGGGTCTACGGTGGCGTTGGTTCGTCGCAGAGTGCTCCGCTGCAGGTGCGGACGTACAAGTGGGAGAATCCGGACAAGAGTGCCATTGCTATCGATACCGGCTCCATATGGATCGTCAATACGTTGGACGCTGGTAACGGGGATGACCAGAGACATACTCACAAGACTATTATCTACAAGATGCTGTTTCAGGGTACGATGTGGATTAATGATGCCACGTCGGCAGTCTGCGGGCCACTGACAGTTCATTTCTGGCTGGTGTATGATGCTGCGCCGAAGGGGGTTCTTCCTGCCCTTACTGACATATTCGAGGAGGGATTCTCTGGCCTGGGTTCAACCTGGGTCGTTAACCGGGACAACGTTCACCGGTTCGTGGTGAAGAGGAGGTGGCAGATGCGACTGATGACCAATGGGCAGAAGCCGTACTACACTAACCGCAGTGGGAACGGAGATCCCACCAGTGTCACGATACGGGACTTCAGGAAGTTCTTCACGAAGCTGCGTACTGCAACGGAGTGGAAGAACTCCGCAACAGGAGGGATAGGGGATATAAAGAAAGGGGCCCTATATCTTTGTGCCATGTGTTCGCAGGCACCTGAGGGGTCCGCTAGAGCTATTAACCTGGGGGTGAAGTTTAGGGGCCAGAGCCGCATATACTTCAAATGTACCGGAAATCAATGATAATAAAACATAATATTTTATTCAGATTCCATAGATCCGTTGTTACAAGGCAGTACAGTTTGTACGACGAAGCACAGTATAGCGACGGATGGAGCACTGTGCGTAGCGTCCGGAGGAGGTTGGTAGGGCGGTATTAGGGAAGAAGGGCAACATACAATACCATACACACATTATTACACACTAAGCACCCGAAGGGTGCTTGAAGAAACTATCCCCTTCATACATGTAATGTATCACGCAGTTGCTTTCGATGTACTTGGTCTGAGCCGGTGTACATTGACTCAGCCAGTCTTCGTCTTCATTTACCAGGATGATGGAGGGGATCCCACCACTTATTACCTTCCGCTTGCCGTACTTAGGATTTACGGTGTAGTCACGGTGACATCCGATTAGCTGCTTCCAATTAGGGCAGTACTTGAACGGGATGTCGTCTATAACATTGTATTGTGCGGTGGGGTCATAAGTGGTGAAGTCCACCAGTCCGTTCCAATAGTTGTGCTTCCCGAGGCTTCTTGCCCAGGTTGTCTTTCCTGTTCGGGTTGGTCCGCATACATATAGGGAGGTATATCTTCTGGCGGTTGTTGGAGCATCCTGGATGTCAAATCATGGACGTGCTGTAGATATTCGGCAGTAGTTACATCAAGATAATCCATGTTTTGACGTGTTTGTGTGTATACTTCTTCACATACCGTGTATGTCTTTATGTTCTCTGTGGCCCACTGACTCAGCTGTTCGCTGCAACGTAGCTGATCAGTGGGGACAGAGCTTGCGTATGGAGTTACGGTGGTGGGGAAGAGCTTCTCTGCGCTGTACTCGAACTGGGCCAGCCTAGTTGCCCAGTCGAAGGGGAATGTCTGGCGTACCATAGAGAGGTACTCTGTTTTCGAGGTGGACGAGGAGATGATTTTCCTCATCTTGGTGTCCTTGGTGTCAGATCCAGGGGCCCTCCTCTTGAGGGTCTTCTTGCTGAACGGTTTGGCGTTGTAGAATTCGCCCCATTCTGCAATACTGACGGTTCCCGGCTTGGTGATGTAGTCTCTGACCTGCTTGCAGTTCTGAGCAGGCTGACAGTTAGGATGATAAGACTGATAGTCAAAAAACCTAGAGTCTTTGGTCTCCAGGCGGTTAGATAGCTGTAAAAGGGTGTGTAGGTGAAAGGATCCATCTTTGTGACTCTCACGAGTAACAAGTATGTAGATAGGTACACGACTGTGGAGCAGAGTAAGAAGATAGTGAAGGAGTTCCCAAGGATCAACAGGACACTTAGGATAGGTGAGGAAGAAGTACTTGGTCCGTACGCTGAATTGGTGGGAAGTGGAGGGATCGGCCATGAGTGAAGCGGAGCCGTTGGATTTGGCTGAAGGGGACGTGCGGGAGAATCCCGGTTGTCCAAAGGCTGCTTTTCCCACAAATCTATACCCTAGACCAGTGCGATGTGGGAAGTGCCTTAGGTGGGAACCTTGGGCCGGCTATTTATATGGGTGTCAAAGTGGCTGTAGTTGGGCCTTGGCCCACTCCAGCCGGGGGCCGGAAAGCGAAATCGCACTGATATAATGTTACCAGTGCGATTTCTCTTTCCGAGCGCGATAGCGCGAGGCGCCGGGTTTCCGCGTACCTTCTTACGCTGGGCCGCCTTTATGTGTGATGGGACGTAGGGGGGATTCCCATTAATTTATTAGTGCGCTCCATGACATCGGGGG
Gene Information
|
NCBI Accession
|
YP_009553473.1
|
|
Location
|
1-267 |
|
Protein Name
|
movement protein |
|
Coding Region
|
ATGGCGAATTTCTCTATCCTCACTGACTCGGCCTACCCTACGGTTCCTTCGCCTCCAAGTCAAGCGGTGTCGGCCGGGTTTGAAGGTGCTCTGACGACGCTTTTCCTCGTCGTTATCGGCTCTCTACTGTTCGTTGGCGTGTTCTACCTCGGCTGGGTTCTCTGCGTGAAGGACCTCGTCCTCACCTTCAAGGCCCGCCGCCAAAGGAGGACCGAGGAGATCGGTTTCGGGAACACTCCCGCGAGGGTTGATGCCAGGGGGGTCTAA |
|
Protein Sequence
|
MANFSILTDSAYPTVPSPPSQAVSAGFEGALTTLFLVVIGSLLFVGVFYLGWVLCVKDLVLTFKARRQRRTEEIGFGNTPARVDARGV |
|
NCBI Accession
|
YP_009553474.1
|
|
Location
|
251-1057 |
|
Protein Name
|
capsid protein |
|
Coding Region
|
ATGCCAGGGGGGTCTAAGAGGGCCTCGTCCGGGAAAGATGGTTCGAGGCCGAAGCGTCGCAAGGGAGAGCCCGAGGCCGCCTTTAGGGCCCGCATATTGGGCTGGGCCTCTTCCCAGTTCGGGAGGAGGGTCTACGGTGGCGTTGGTTCGTCGCAGAGTGCTCCGCTGCAGGTGCGGACGTACAAGTGGGAGAATCCGGACAAGAGTGCCATTGCTATCGATACCGGCTCCATATGGATCGTCAATACGTTGGACGCTGGTAACGGGGATGACCAGAGACATACTCACAAGACTATTATCTACAAGATGCTGTTTCAGGGTACGATGTGGATTAATGATGCCACGTCGGCAGTCTGCGGGCCACTGACAGTTCATTTCTGGCTGGTGTATGATGCTGCGCCGAAGGGGGTTCTTCCTGCCCTTACTGACATATTCGAGGAGGGATTCTCTGGCCTGGGTTCAACCTGGGTCGTTAACCGGGACAACGTTCACCGGTTCGTGGTGAAGAGGAGGTGGCAGATGCGACTGATGACCAATGGGCAGAAGCCGTACTACACTAACCGCAGTGGGAACGGAGATCCCACCAGTGTCACGATACGGGACTTCAGGAAGTTCTTCACGAAGCTGCGTACTGCAACGGAGTGGAAGAACTCCGCAACAGGAGGGATAGGGGATATAAAGAAAGGGGCCCTATATCTTTGTGCCATGTGTTCGCAGGCACCTGAGGGGTCCGCTAGAGCTATTAACCTGGGGGTGAAGTTTAGGGGCCAGAGCCGCATATACTTCAAATGTACCGGAAATCAATGA |
|
Protein Sequence
|
MPGGSKRASSGKDGSRPKRRKGEPEAAFRARILGWASSQFGRRVYGGVGSSQSAPLQVRTYKWENPDKSAIAIDTGSIWIVNTLDAGNGDDQRHTHKTIIYKMLFQGTMWINDATSAVCGPLTVHFWLVYDAAPKGVLPALTDIFEEGFSGLGSTWVVNRDNVHRFVVKRRWQMRLMTNGQKPYYTNRSGNGDPTSVTIRDFRKFFTKLRTATEWKNSATGGIGDIKKGALYLCAMCSQAPEGSARAINLGVKFRGQSRIYFKCTGNQ |
|
NCBI Accession
|
YP_009553475.1
|
|
Location
|
1238-1648,1735-2388 |
|
Protein Name
|
Rep |
|
Coding Region
|
ATGGCCGATCCCTCCACTTCCCACCAATTCAGCGTACGGACCAAGTACTTCTTCCTCACCTATCCTAAGTGTCCTGTTGATCCTTGGGAACTCCTTCACTATCTTCTTACTCTGCTCCACAGTCGTGTACCTATCTACATACTTGTTACTCGTGAGAGTCACAAAGATGGATCCTTTCACCTACACACCCTTTTACAGCTATCTAACCGCCTGGAGACCAAAGACTCTAGGTTTTTTGACTATCAGTCTTATCATCCTAACTGTCAGCCTGCTCAGAACTGCAAGCAGGTCAGAGACTACATCACCAAGCCGGGAACCGTCAGTATTGCAGAATGGGGCGAATTCTACAACGCCAAACCGTTCAGCAAGAAGACCCTCAAGAGGAGGGCCCCTGGATCTGACACCAAGGACACCAAGATGAGGAAAATCATCTCCTCGTCCACCTCGAAAACAGAGTACCTCTCTATGGTACGCCAGACATTCCCCTTCGACTGGGCAACTAGGCTGGCCCAGTTCGAGTACAGCGCAGAGAAGCTCTTCCCCACCACCGTAACTCCATACGCAAGCTCTGTCCCCACTGATCAGCTACGTTGCAGCGAACAGCTGAGTCAGTGGGCCACAGAGAACATAAAGACATACACGGTATGTGAAGAAGATGCTCCAACAACCGCCAGAAGATATACCTCCCTATATGTATGCGGACCAACCCGAACAGGAAAGACAACCTGGGCAAGAAGCCTCGGGAAGCACAACTATTGGAACGGACTGGTGGACTTCACCACTTATGACCCCACCGCACAATACAATGTTATAGACGACATCCCGTTCAAGTACTGCCCTAATTGGAAGCAGCTAATCGGATGTCACCGTGACTACACCGTAAATCCTAAGTACGGCAAGCGGAAGGTAATAAGTGGTGGGATCCCCTCCATCATCCTGGTAAATGAAGACGAAGACTGGCTGAGTCAATGTACACCGGCTCAGACCAAGTACATCGAAAGCAACTGCGTGATACATTACATGTATGAAGGGGATAGTTTCTTCAAGCACCCTTCGGGTGCTTAG |
|
Protein Sequence
|
MADPSTSHQFSVRTKYFFLTYPKCPVDPWELLHYLLTLLHSRVPIYILVTRESHKDGSFHLHTLLQLSNRLETKDSRFFDYQSYHPNCQPAQNCKQVRDYITKPGTVSIAEWGEFYNAKPFSKKTLKRRAPGSDTKDTKMRKIISSSTSKTEYLSMVRQTFPFDWATRLAQFEYSAEKLFPTTVTPYASSVPTDQLRCSEQLSQWATENIKTYTVCEEDAPTTARRYTSLYVCGPTRTGKTTWARSLGKHNYWNGLVDFTTYDPTAQYNVIDDIPFKYCPNWKQLIGCHRDYTVNPKYGKRKVISGGIPSIILVNEDEDWLSQCTPAQTKYIESNCVIHYMYEGDSFFKHPSGA |
|
NCBI Accession
|
YP_009553476.1
|
|
Location
|
1489-2388 |
|
Protein Name
|
RepA |
|
Coding Region
|
ATGGCCGATCCCTCCACTTCCCACCAATTCAGCGTACGGACCAAGTACTTCTTCCTCACCTATCCTAAGTGTCCTGTTGATCCTTGGGAACTCCTTCACTATCTTCTTACTCTGCTCCACAGTCGTGTACCTATCTACATACTTGTTACTCGTGAGAGTCACAAAGATGGATCCTTTCACCTACACACCCTTTTACAGCTATCTAACCGCCTGGAGACCAAAGACTCTAGGTTTTTTGACTATCAGTCTTATCATCCTAACTGTCAGCCTGCTCAGAACTGCAAGCAGGTCAGAGACTACATCACCAAGCCGGGAACCGTCAGTATTGCAGAATGGGGCGAATTCTACAACGCCAAACCGTTCAGCAAGAAGACCCTCAAGAGGAGGGCCCCTGGATCTGACACCAAGGACACCAAGATGAGGAAAATCATCTCCTCGTCCACCTCGAAAACAGAGTACCTCTCTATGGTACGCCAGACATTCCCCTTCGACTGGGCAACTAGGCTGGCCCAGTTCGAGTACAGCGCAGAGAAGCTCTTCCCCACCACCGTAACTCCATACGCAAGCTCTGTCCCCACTGATCAGCTACGTTGCAGCGAACAGCTGAGTCAGTGGGCCACAGAGAACATAAAGACATACACGGTATGTGAAGAAGTATACACACAAACACGTCAAAACATGGATTATCTTGATGTAACTACTGCCGAATATCTACAGCACGTCCATGATTTGACATCCAGGATGCTCCAACAACCGCCAGAAGATATACCTCCCTATATGTATGCGGACCAACCCGAACAGGAAAGACAACCTGGGCAAGAAGCCTCGGGAAGCACAACTATTGGAACGGACTGGTGGACTTCACCACTTATGACCCCACCGCACAATACAATGTTATAG |
|
Protein Sequence
|
MADPSTSHQFSVRTKYFFLTYPKCPVDPWELLHYLLTLLHSRVPIYILVTRESHKDGSFHLHTLLQLSNRLETKDSRFFDYQSYHPNCQPAQNCKQVRDYITKPGTVSIAEWGEFYNAKPFSKKTLKRRAPGSDTKDTKMRKIISSSTSKTEYLSMVRQTFPFDWATRLAQFEYSAEKLFPTTVTPYASSVPTDQLRCSEQLSQWATENIKTYTVCEEVYTQTRQNMDYLDVTTAEYLQHVHDLTSRMLQQPPEDIPPYMYADQPEQERQPGQEASGSTTIGTDWWTSPLMTPPHNTML |