Rice latent virus 1

Basic Information

Genus Mastrevirus
NCBI Assembly GCF_004130515.1
Isolate Australia
Release date 2019/2/12
Submitter Kraberger,S., Geering,A.D.W., Walters,M., Martin,D.P., Varsani,A.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_040792
ATGGCGAATTTCTCTATCCTCACTGACTCGGCCTACCCTACGGTTCCTTCGCCTCCAAGTCAAGCGGTGTCGGCCGGGTTTGAAGGTGCTCTGACGACGCTTTTCCTCGTCGTTATCGGCTCTCTACTGTTCGTTGGCGTGTTCTACCTCGGCTGGGTTCTCTGCGTGAAGGACCTCGTCCTCACCTTCAAGGCCCGCCGCCAAAGGAGGACCGAGGAGATCGGTTTCGGGAACACTCCCGCGAGGGTTGATGCCAGGGGGGTCTAAGAGGGCCTCGTCCGGGAAAGATGGTTCGAGGCCGAAGCGTCGCAAGGGAGAGCCCGAGGCCGCCTTTAGGGCCCGCATATTGGGCTGGGCCTCTTCCCAGTTCGGGAGGAGGGTCTACGGTGGCGTTGGTTCGTCGCAGAGTGCTCCGCTGCAGGTGCGGACGTACAAGTGGGAGAATCCGGACAAGAGTGCCATTGCTATCGATACCGGCTCCATATGGATCGTCAATACGTTGGACGCTGGTAACGGGGATGACCAGAGACATACTCACAAGACTATTATCTACAAGATGCTGTTTCAGGGTACGATGTGGATTAATGATGCCACGTCGGCAGTCTGCGGGCCACTGACAGTTCATTTCTGGCTGGTGTATGATGCTGCGCCGAAGGGGGTTCTTCCTGCCCTTACTGACATATTCGAGGAGGGATTCTCTGGCCTGGGTTCAACCTGGGTCGTTAACCGGGACAACGTTCACCGGTTCGTGGTGAAGAGGAGGTGGCAGATGCGACTGATGACCAATGGGCAGAAGCCGTACTACACTAACCGCAGTGGGAACGGAGATCCCACCAGTGTCACGATACGGGACTTCAGGAAGTTCTTCACGAAGCTGCGTACTGCAACGGAGTGGAAGAACTCCGCAACAGGAGGGATAGGGGATATAAAGAAAGGGGCCCTATATCTTTGTGCCATGTGTTCGCAGGCACCTGAGGGGTCCGCTAGAGCTATTAACCTGGGGGTGAAGTTTAGGGGCCAGAGCCGCATATACTTCAAATGTACCGGAAATCAATGATAATAAAACATAATATTTTATTCAGATTCCATAGATCCGTTGTTACAAGGCAGTACAGTTTGTACGACGAAGCACAGTATAGCGACGGATGGAGCACTGTGCGTAGCGTCCGGAGGAGGTTGGTAGGGCGGTATTAGGGAAGAAGGGCAACATACAATACCATACACACATTATTACACACTAAGCACCCGAAGGGTGCTTGAAGAAACTATCCCCTTCATACATGTAATGTATCACGCAGTTGCTTTCGATGTACTTGGTCTGAGCCGGTGTACATTGACTCAGCCAGTCTTCGTCTTCATTTACCAGGATGATGGAGGGGATCCCACCACTTATTACCTTCCGCTTGCCGTACTTAGGATTTACGGTGTAGTCACGGTGACATCCGATTAGCTGCTTCCAATTAGGGCAGTACTTGAACGGGATGTCGTCTATAACATTGTATTGTGCGGTGGGGTCATAAGTGGTGAAGTCCACCAGTCCGTTCCAATAGTTGTGCTTCCCGAGGCTTCTTGCCCAGGTTGTCTTTCCTGTTCGGGTTGGTCCGCATACATATAGGGAGGTATATCTTCTGGCGGTTGTTGGAGCATCCTGGATGTCAAATCATGGACGTGCTGTAGATATTCGGCAGTAGTTACATCAAGATAATCCATGTTTTGACGTGTTTGTGTGTATACTTCTTCACATACCGTGTATGTCTTTATGTTCTCTGTGGCCCACTGACTCAGCTGTTCGCTGCAACGTAGCTGATCAGTGGGGACAGAGCTTGCGTATGGAGTTACGGTGGTGGGGAAGAGCTTCTCTGCGCTGTACTCGAACTGGGCCAGCCTAGTTGCCCAGTCGAAGGGGAATGTCTGGCGTACCATAGAGAGGTACTCTGTTTTCGAGGTGGACGAGGAGATGATTTTCCTCATCTTGGTGTCCTTGGTGTCAGATCCAGGGGCCCTCCTCTTGAGGGTCTTCTTGCTGAACGGTTTGGCGTTGTAGAATTCGCCCCATTCTGCAATACTGACGGTTCCCGGCTTGGTGATGTAGTCTCTGACCTGCTTGCAGTTCTGAGCAGGCTGACAGTTAGGATGATAAGACTGATAGTCAAAAAACCTAGAGTCTTTGGTCTCCAGGCGGTTAGATAGCTGTAAAAGGGTGTGTAGGTGAAAGGATCCATCTTTGTGACTCTCACGAGTAACAAGTATGTAGATAGGTACACGACTGTGGAGCAGAGTAAGAAGATAGTGAAGGAGTTCCCAAGGATCAACAGGACACTTAGGATAGGTGAGGAAGAAGTACTTGGTCCGTACGCTGAATTGGTGGGAAGTGGAGGGATCGGCCATGAGTGAAGCGGAGCCGTTGGATTTGGCTGAAGGGGACGTGCGGGAGAATCCCGGTTGTCCAAAGGCTGCTTTTCCCACAAATCTATACCCTAGACCAGTGCGATGTGGGAAGTGCCTTAGGTGGGAACCTTGGGCCGGCTATTTATATGGGTGTCAAAGTGGCTGTAGTTGGGCCTTGGCCCACTCCAGCCGGGGGCCGGAAAGCGAAATCGCACTGATATAATGTTACCAGTGCGATTTCTCTTTCCGAGCGCGATAGCGCGAGGCGCCGGGTTTCCGCGTACCTTCTTACGCTGGGCCGCCTTTATGTGTGATGGGACGTAGGGGGGATTCCCATTAATTTATTAGTGCGCTCCATGACATCGGGGG

Gene Information

NCBI Accession YP_009553473.1
Location 1-267
Protein Name movement protein
Coding Region ATGGCGAATTTCTCTATCCTCACTGACTCGGCCTACCCTACGGTTCCTTCGCCTCCAAGTCAAGCGGTGTCGGCCGGGTTTGAAGGTGCTCTGACGACGCTTTTCCTCGTCGTTATCGGCTCTCTACTGTTCGTTGGCGTGTTCTACCTCGGCTGGGTTCTCTGCGTGAAGGACCTCGTCCTCACCTTCAAGGCCCGCCGCCAAAGGAGGACCGAGGAGATCGGTTTCGGGAACACTCCCGCGAGGGTTGATGCCAGGGGGGTCTAA
Protein Sequence MANFSILTDSAYPTVPSPPSQAVSAGFEGALTTLFLVVIGSLLFVGVFYLGWVLCVKDLVLTFKARRQRRTEEIGFGNTPARVDARGV

NCBI Accession YP_009553474.1
Location 251-1057
Protein Name capsid protein
Coding Region ATGCCAGGGGGGTCTAAGAGGGCCTCGTCCGGGAAAGATGGTTCGAGGCCGAAGCGTCGCAAGGGAGAGCCCGAGGCCGCCTTTAGGGCCCGCATATTGGGCTGGGCCTCTTCCCAGTTCGGGAGGAGGGTCTACGGTGGCGTTGGTTCGTCGCAGAGTGCTCCGCTGCAGGTGCGGACGTACAAGTGGGAGAATCCGGACAAGAGTGCCATTGCTATCGATACCGGCTCCATATGGATCGTCAATACGTTGGACGCTGGTAACGGGGATGACCAGAGACATACTCACAAGACTATTATCTACAAGATGCTGTTTCAGGGTACGATGTGGATTAATGATGCCACGTCGGCAGTCTGCGGGCCACTGACAGTTCATTTCTGGCTGGTGTATGATGCTGCGCCGAAGGGGGTTCTTCCTGCCCTTACTGACATATTCGAGGAGGGATTCTCTGGCCTGGGTTCAACCTGGGTCGTTAACCGGGACAACGTTCACCGGTTCGTGGTGAAGAGGAGGTGGCAGATGCGACTGATGACCAATGGGCAGAAGCCGTACTACACTAACCGCAGTGGGAACGGAGATCCCACCAGTGTCACGATACGGGACTTCAGGAAGTTCTTCACGAAGCTGCGTACTGCAACGGAGTGGAAGAACTCCGCAACAGGAGGGATAGGGGATATAAAGAAAGGGGCCCTATATCTTTGTGCCATGTGTTCGCAGGCACCTGAGGGGTCCGCTAGAGCTATTAACCTGGGGGTGAAGTTTAGGGGCCAGAGCCGCATATACTTCAAATGTACCGGAAATCAATGA
Protein Sequence MPGGSKRASSGKDGSRPKRRKGEPEAAFRARILGWASSQFGRRVYGGVGSSQSAPLQVRTYKWENPDKSAIAIDTGSIWIVNTLDAGNGDDQRHTHKTIIYKMLFQGTMWINDATSAVCGPLTVHFWLVYDAAPKGVLPALTDIFEEGFSGLGSTWVVNRDNVHRFVVKRRWQMRLMTNGQKPYYTNRSGNGDPTSVTIRDFRKFFTKLRTATEWKNSATGGIGDIKKGALYLCAMCSQAPEGSARAINLGVKFRGQSRIYFKCTGNQ

NCBI Accession YP_009553475.1
Location 1238-1648,1735-2388
Protein Name Rep
Coding Region ATGGCCGATCCCTCCACTTCCCACCAATTCAGCGTACGGACCAAGTACTTCTTCCTCACCTATCCTAAGTGTCCTGTTGATCCTTGGGAACTCCTTCACTATCTTCTTACTCTGCTCCACAGTCGTGTACCTATCTACATACTTGTTACTCGTGAGAGTCACAAAGATGGATCCTTTCACCTACACACCCTTTTACAGCTATCTAACCGCCTGGAGACCAAAGACTCTAGGTTTTTTGACTATCAGTCTTATCATCCTAACTGTCAGCCTGCTCAGAACTGCAAGCAGGTCAGAGACTACATCACCAAGCCGGGAACCGTCAGTATTGCAGAATGGGGCGAATTCTACAACGCCAAACCGTTCAGCAAGAAGACCCTCAAGAGGAGGGCCCCTGGATCTGACACCAAGGACACCAAGATGAGGAAAATCATCTCCTCGTCCACCTCGAAAACAGAGTACCTCTCTATGGTACGCCAGACATTCCCCTTCGACTGGGCAACTAGGCTGGCCCAGTTCGAGTACAGCGCAGAGAAGCTCTTCCCCACCACCGTAACTCCATACGCAAGCTCTGTCCCCACTGATCAGCTACGTTGCAGCGAACAGCTGAGTCAGTGGGCCACAGAGAACATAAAGACATACACGGTATGTGAAGAAGATGCTCCAACAACCGCCAGAAGATATACCTCCCTATATGTATGCGGACCAACCCGAACAGGAAAGACAACCTGGGCAAGAAGCCTCGGGAAGCACAACTATTGGAACGGACTGGTGGACTTCACCACTTATGACCCCACCGCACAATACAATGTTATAGACGACATCCCGTTCAAGTACTGCCCTAATTGGAAGCAGCTAATCGGATGTCACCGTGACTACACCGTAAATCCTAAGTACGGCAAGCGGAAGGTAATAAGTGGTGGGATCCCCTCCATCATCCTGGTAAATGAAGACGAAGACTGGCTGAGTCAATGTACACCGGCTCAGACCAAGTACATCGAAAGCAACTGCGTGATACATTACATGTATGAAGGGGATAGTTTCTTCAAGCACCCTTCGGGTGCTTAG
Protein Sequence MADPSTSHQFSVRTKYFFLTYPKCPVDPWELLHYLLTLLHSRVPIYILVTRESHKDGSFHLHTLLQLSNRLETKDSRFFDYQSYHPNCQPAQNCKQVRDYITKPGTVSIAEWGEFYNAKPFSKKTLKRRAPGSDTKDTKMRKIISSSTSKTEYLSMVRQTFPFDWATRLAQFEYSAEKLFPTTVTPYASSVPTDQLRCSEQLSQWATENIKTYTVCEEDAPTTARRYTSLYVCGPTRTGKTTWARSLGKHNYWNGLVDFTTYDPTAQYNVIDDIPFKYCPNWKQLIGCHRDYTVNPKYGKRKVISGGIPSIILVNEDEDWLSQCTPAQTKYIESNCVIHYMYEGDSFFKHPSGA

NCBI Accession YP_009553476.1
Location 1489-2388
Protein Name RepA
Coding Region ATGGCCGATCCCTCCACTTCCCACCAATTCAGCGTACGGACCAAGTACTTCTTCCTCACCTATCCTAAGTGTCCTGTTGATCCTTGGGAACTCCTTCACTATCTTCTTACTCTGCTCCACAGTCGTGTACCTATCTACATACTTGTTACTCGTGAGAGTCACAAAGATGGATCCTTTCACCTACACACCCTTTTACAGCTATCTAACCGCCTGGAGACCAAAGACTCTAGGTTTTTTGACTATCAGTCTTATCATCCTAACTGTCAGCCTGCTCAGAACTGCAAGCAGGTCAGAGACTACATCACCAAGCCGGGAACCGTCAGTATTGCAGAATGGGGCGAATTCTACAACGCCAAACCGTTCAGCAAGAAGACCCTCAAGAGGAGGGCCCCTGGATCTGACACCAAGGACACCAAGATGAGGAAAATCATCTCCTCGTCCACCTCGAAAACAGAGTACCTCTCTATGGTACGCCAGACATTCCCCTTCGACTGGGCAACTAGGCTGGCCCAGTTCGAGTACAGCGCAGAGAAGCTCTTCCCCACCACCGTAACTCCATACGCAAGCTCTGTCCCCACTGATCAGCTACGTTGCAGCGAACAGCTGAGTCAGTGGGCCACAGAGAACATAAAGACATACACGGTATGTGAAGAAGTATACACACAAACACGTCAAAACATGGATTATCTTGATGTAACTACTGCCGAATATCTACAGCACGTCCATGATTTGACATCCAGGATGCTCCAACAACCGCCAGAAGATATACCTCCCTATATGTATGCGGACCAACCCGAACAGGAAAGACAACCTGGGCAAGAAGCCTCGGGAAGCACAACTATTGGAACGGACTGGTGGACTTCACCACTTATGACCCCACCGCACAATACAATGTTATAG
Protein Sequence MADPSTSHQFSVRTKYFFLTYPKCPVDPWELLHYLLTLLHSRVPIYILVTRESHKDGSFHLHTLLQLSNRLETKDSRFFDYQSYHPNCQPAQNCKQVRDYITKPGTVSIAEWGEFYNAKPFSKKTLKRRAPGSDTKDTKMRKIISSSTSKTEYLSMVRQTFPFDWATRLAQFEYSAEKLFPTTVTPYASSVPTDQLRCSEQLSQWATENIKTYTVCEEVYTQTRQNMDYLDVTTAEYLQHVHDLTSRMLQQPPEDIPPYMYADQPEQERQPGQEASGSTTIGTDWWTSPLMTPPHNTML

References More References in PubMed

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