Oat dwarf virus
Basic Information
| Genus | Mastrevirus |
|---|---|
| NCBI Assembly | GCF_000875245.1 |
| Isolate | Germany:Saxony-Anhalt |
| Release date | 2015/2/13 |
| Submitter | Schubert,J., Habekuss,A., Kazmaier,K., Jeske,H. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_010799
Gene Information
| NCBI Accession | YP_001941160.1 |
|---|---|
| Location | 185-436 |
| Gene Name | V1 |
| Protein Name | hypothetical protein |
| Coding Region | ATGGAGATTTCCCAGTATACCCCGCCTCTACCATATAGAGATCAGCTGTATACTGCTCCCGTCTCTACGGAGTCTTCTGACTTAGCCTGGCGAACCTTTGTGTTCGTGATATTTGGTTGCTTAGTTGCTGTAGGCATCATTTATCTGGCTTATACTCTTTTCCTGAAGGACTGCATTCTTGTCTGGAAGGCTAAGAGACAGAAGAAGACGGAGGAGATTGGATACGGGAATACCCCGGCGCGTCCTCAATGA |
| Protein Sequence | MEISQYTPPLPYRDQLYTAPVSTESSDLAWRTFVFVIFGCLVAVGIIYLAYTLFLKDCILVWKAKRQKKTEEIGYGNTPARPQ |
| NCBI Accession | YP_001941161.1 |
|---|---|
| Location | 433-1206 |
| Gene Name | V2 |
| Protein Name | Coat protein |
| Coding Region | ATGACTGATTTAAAGTCTAAGGGGAAGCGTAAGCGGGATGAGGGGGAGTCATCTGGAAGATGGAAGGGAGCCGTATACAAGAGGCGTAAGACCCAGTACAAGGTTGTACCTGTCAGGCCACCGGCTCTCTGTGTTCTCCGTCAGCAGTGGATTACTCCGGACAAGCAGAGTGTGGTTGTTACCAACACTCCGAGGATTGATCTTATTACATGCTTTGCAGCTGGGAAGGGCGATGATAATCGCCATACTAACCAGACCATCATGTACAAGTTTCACCTGCAGGGGAGTGTGTACGTGGCGGATGCTTCCTCCAAGTTCGTAACTCCGTTGAGGTTGTATCACTGGCTCGTCTATGACGCCGAGCCTAAACAGGCCATGCCTGGTATTGAAGACATCTTCACGATGCCTTGGAATGTCCTGCCATCCACATGGACCATCTGGAGAGCCTGGGCTCACCGGTTCGTAGTGAAGAGGAAGTGGCACGTAGACCTCGTCTCAGACGGCAAGAAGGTTGGGTCGTCCACCGCTGATACGCGGTATAACTACGTAGTAGGGAAGAACATAGTCGACTGCAATAAGTTCATCAAGGGTCTCCGTGTATCCACGGAATGGATGAACACGGGTGATGGCAAGATTGGTGACATTAAGAAGGGAGCGCTGTATCTAGTTACATGTACTAGGGCTGGAGTCACTGGTGACTCTGCATCCACTGGTTTCAGTGTGGTCTGTAACTTGACACATGCGTGTTATTTCAAGTCCATTGGACTGCAATAA |
| Protein Sequence | MTDLKSKGKRKRDEGESSGRWKGAVYKRRKTQYKVVPVRPPALCVLRQQWITPDKQSVVVTNTPRIDLITCFAAGKGDDNRHTNQTIMYKFHLQGSVYVADASSKFVTPLRLYHWLVYDAEPKQAMPGIEDIFTMPWNVLPSTWTIWRAWAHRFVVKRKWHVDLVSDGKKVGSSTADTRYNYVVGKNIVDCNKFIKGLRVSTEWMNTGDGKIGDIKKGALYLVTCTRAGVTGDSASTGFSVVCNLTHACYFKSIGLQ |
| NCBI Accession | YP_001941162.1 |
|---|---|
| Location | 1377-1791,1887-2524 |
| Gene Name | rep |
| Protein Name | Replicase |
| Coding Region | ATGGCTACCGTTGCTTCCAGCTCCACCAGGTTTCGCGTCTACTCCAAATATTTATTCCTTACATATCCACAATGCATCCTTGAGCCACAGTACGCCTTGGATTCTCTTCGCTCTCTCCTCCAGAAGTATAAACCACTGTATATCTGCTCCGTCAGAGAGCGACATGAAGACAATTCACCACATCTGCACGTACTCGTGCAGTGTGAGAAGAGAGCTTCAATCACCAATCCCAATGCCTTGAACCTACGGATGGACTTATCTCCATTCACCACATATCATCCCAACATCCAACCTGCCAACAACTGCAACGATGTTCGTGAGTACATCACCAAGGAGGTTGATTCTCATGAACATACTGCTGAGTGGGGAACATTCATCCACCACACAACTTCTGGTCGTCCTGATAAGGACGAAGCGATGAAGCAGATCATCGAGTCTGCTACCTCCAAGGAGGAGTTCATCAGTATGGTCAGATCTAGGTTCCCGTTTGAATGGTCTATCAACCTACAACGCTTCCAGTATACTGCTAACTATCTATTTCCTGATCCCATCCCCCAGTATACACCAGAGTTTCCAACGGAATCTCTGATATGTCATGAGACCATTCAAAACTGGGCCAACACCGAACTGTTCACTGTACGCCATAGATCCCTCTACATTTGCGGACCTACTAGAACAGGAAAGACTTCCTGGGCAAGATCTCTAGGGATCCACAACTACTACAACAGCCAAGTAGATTTCACGAACTATAATGCTGATGCATTATACAATATAATAGATGACATCCCTATTAAATATGTGCCAAACTGGAAATGCTTCCTCGGTGCTCAGAAGGATTTCACAGTCAACCCCAAGTATGGCAAGAAGAAGACAATCAGGGGTGGCATACCATGTATCGTTTTAGTAAACCCTGATGAAGACTGGCTGAAGGACATGACTCCCCTGCAGTCGGACTATTTGTACGCCAACGCCGAGATCCACTATATGGAAGATGGTGAGACATTTATCAACCATTCCTTCACCTTCGGTGAAGGGGCCACTGCTTCGCAGTGA |
| Protein Sequence | MATVASSSTRFRVYSKYLFLTYPQCILEPQYALDSLRSLLQKYKPLYICSVRERHEDNSPHLHVLVQCEKRASITNPNALNLRMDLSPFTTYHPNIQPANNCNDVREYITKEVDSHEHTAEWGTFIHHTTSGRPDKDEAMKQIIESATSKEEFISMVRSRFPFEWSINLQRFQYTANYLFPDPIPQYTPEFPTESLICHETIQNWANTELFTVRHRSLYICGPTRTGKTSWARSLGIHNYYNSQVDFTNYNADALYNIIDDIPIKYVPNWKCFLGAQKDFTVNPKYGKKKTIRGGIPCIVLVNPDEDWLKDMTPLQSDYLYANAEIHYMEDGETFINHSFTFGEGATASQ |
| NCBI Accession | YP_001941163.1 |
|---|---|
| Location | 1724-2524 |
| Gene Name | C1-1 |
| Protein Name | RepA |
| Coding Region | ATGGCTACCGTTGCTTCCAGCTCCACCAGGTTTCGCGTCTACTCCAAATATTTATTCCTTACATATCCACAATGCATCCTTGAGCCACAGTACGCCTTGGATTCTCTTCGCTCTCTCCTCCAGAAGTATAAACCACTGTATATCTGCTCCGTCAGAGAGCGACATGAAGACAATTCACCACATCTGCACGTACTCGTGCAGTGTGAGAAGAGAGCTTCAATCACCAATCCCAATGCCTTGAACCTACGGATGGACTTATCTCCATTCACCACATATCATCCCAACATCCAACCTGCCAACAACTGCAACGATGTTCGTGAGTACATCACCAAGGAGGTTGATTCTCATGAACATACTGCTGAGTGGGGAACATTCATCCACCACACAACTTCTGGTCGTCCTGATAAGGACGAAGCGATGAAGCAGATCATCGAGTCTGCTACCTCCAAGGAGGAGTTCATCAGTATGGTCAGATCTAGGTTCCCGTTTGAATGGTCTATCAACCTACAACGCTTCCAGTATACTGCTAACTATCTATTTCCTGATCCCATCCCCCAGTATACACCAGAGTTTCCAACGGAATCTCTGATATGTCATGAGACCATTCAAAACTGGGCCAACACCGAACTGTTCACTGTAAGTCTAGATTCTTACATCCTTTGTAATAGCATTCCTTCGGACCAAGCTCTATCTAACCTCAGGTGGATGGATGACTATACTAGGAATCACCAGGACGCCATAGATCCCTCTACATTTGCGGACCTACTAGAACAGGAAAGACTTCCTGGGCAAGATCTCTAG |
| Protein Sequence | MATVASSSTRFRVYSKYLFLTYPQCILEPQYALDSLRSLLQKYKPLYICSVRERHEDNSPHLHVLVQCEKRASITNPNALNLRMDLSPFTTYHPNIQPANNCNDVREYITKEVDSHEHTAEWGTFIHHTTSGRPDKDEAMKQIIESATSKEEFISMVRSRFPFEWSINLQRFQYTANYLFPDPIPQYTPEFPTESLICHETIQNWANTELFTVSLDSYILCNSIPSDQALSNLRWMDDYTRNHQDAIDPSTFADLLEQERLPGQDL |
References More References in PubMed
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