Oat dwarf virus
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_000875245.1 |
| Isolate |
Germany:Saxony-Anhalt |
| Release date |
2015/2/13 |
| Submitter |
Schubert,J., Habekuss,A., Kazmaier,K., Jeske,H. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCCTCCGTGGCCCCCCCCGAGGCCCACGTGGCTTTTCGTACGTGGGCCGAGGCCGCTAGTGCGCGGTCCCGGATAAGATGCTGATTGTGTCACTGTCACACTTATTGTGATTGTGTGCAATCTGCACCAAATGGAATCTGTGATAACTTAGACTATAAGTAAGGATGATTGCGAAGCATATGGATGGAGATTTCCCAGTATACCCCGCCTCTACCATATAGAGATCAGCTGTATACTGCTCCCGTCTCTACGGAGTCTTCTGACTTAGCCTGGCGAACCTTTGTGTTCGTGATATTTGGTTGCTTAGTTGCTGTAGGCATCATTTATCTGGCTTATACTCTTTTCCTGAAGGACTGCATTCTTGTCTGGAAGGCTAAGAGACAGAAGAAGACGGAGGAGATTGGATACGGGAATACCCCGGCGCGTCCTCAATGACTGATTTAAAGTCTAAGGGGAAGCGTAAGCGGGATGAGGGGGAGTCATCTGGAAGATGGAAGGGAGCCGTATACAAGAGGCGTAAGACCCAGTACAAGGTTGTACCTGTCAGGCCACCGGCTCTCTGTGTTCTCCGTCAGCAGTGGATTACTCCGGACAAGCAGAGTGTGGTTGTTACCAACACTCCGAGGATTGATCTTATTACATGCTTTGCAGCTGGGAAGGGCGATGATAATCGCCATACTAACCAGACCATCATGTACAAGTTTCACCTGCAGGGGAGTGTGTACGTGGCGGATGCTTCCTCCAAGTTCGTAACTCCGTTGAGGTTGTATCACTGGCTCGTCTATGACGCCGAGCCTAAACAGGCCATGCCTGGTATTGAAGACATCTTCACGATGCCTTGGAATGTCCTGCCATCCACATGGACCATCTGGAGAGCCTGGGCTCACCGGTTCGTAGTGAAGAGGAAGTGGCACGTAGACCTCGTCTCAGACGGCAAGAAGGTTGGGTCGTCCACCGCTGATACGCGGTATAACTACGTAGTAGGGAAGAACATAGTCGACTGCAATAAGTTCATCAAGGGTCTCCGTGTATCCACGGAATGGATGAACACGGGTGATGGCAAGATTGGTGACATTAAGAAGGGAGCGCTGTATCTAGTTACATGTACTAGGGCTGGAGTCACTGGTGACTCTGCATCCACTGGTTTCAGTGTGGTCTGTAACTTGACACATGCGTGTTATTTCAAGTCCATTGGACTGCAATAAATATATATATATATTTCTGGTTACAATCTTATTACATCGGCTCAGCTATGAGCAAAGACAAACCAAATTATCACAAACATAAAACACACCTTACACAAATATATCACAACGAAATACAACACCCTGAGATATTATGTTTATAATGATGTACGCCGTCCGCGCTAGGACAGTCACTGCGAAGCAGTGGCCCCTTCACCGAAGGTGAAGGAATGGTTGATAAATGTCTCACCATCTTCCATATAGTGGATCTCGGCGTTGGCGTACAAATAGTCCGACTGCAGGGGAGTCATGTCCTTCAGCCAGTCTTCATCAGGGTTTACTAAAACGATACATGGTATGCCACCCCTGATTGTCTTCTTCTTGCCATACTTGGGGTTGACTGTGAAATCCTTCTGAGCACCGAGGAAGCATTTCCAGTTTGGCACATATTTAATAGGGATGTCATCTATTATATTGTATAATGCATCAGCATTATAGTTCGTGAAATCTACTTGGCTGTTGTAGTAGTTGTGGATCCCTAGAGATCTTGCCCAGGAAGTCTTTCCTGTTCTAGTAGGTCCGCAAATGTAGAGGGATCTATGGCGTCCTGGTGATTCCTAGTATAGTCATCCATCCACCTGAGGTTAGATAGAGCTTGGTCCGAAGGAATGCTATTACAAAGGATGTAAGAATCTAGACTTACAGTGAACAGTTCGGTGTTGGCCCAGTTTTGAATGGTCTCATGACATATCAGAGATTCCGTTGGAAACTCTGGTGTATACTGGGGGATGGGATCAGGAAATAGATAGTTAGCAGTATACTGGAAGCGTTGTAGGTTGATAGACCATTCAAACGGGAACCTAGATCTGACCATACTGATGAACTCCTCCTTGGAGGTAGCAGACTCGATGATCTGCTTCATCGCTTCGTCCTTATCAGGACGACCAGAAGTTGTGTGGTGGATGAATGTTCCCCACTCAGCAGTATGTTCATGAGAATCAACCTCCTTGGTGATGTACTCACGAACATCGTTGCAGTTGTTGGCAGGTTGGATGTTGGGATGATATGTGGTGAATGGAGATAAGTCCATCCGTAGGTTCAAGGCATTGGGATTGGTGATTGAAGCTCTCTTCTCACACTGCACGAGTACGTGCAGATGTGGTGAATTGTCTTCATGTCGCTCTCTGACGGAGCAGATATACAGTGGTTTATACTTCTGGAGGAGAGAGCGAAGAGAATCCAAGGCGTACTGTGGCTCAAGGATGCATTGTGGATATGTAAGGAATAAATATTTGGAGTAGACGCGAAACCTGGTGGAGCTGGAAGCAACGGTAGCCATGGCTAACACAGAAGTCCGCTAGGTCCTTAGCAGAAATCAGGGGTGTCCCAGAAAACTCTATGCTTACCCTCCGTGTGCCGGTGTGCAGGATTCACATCGTTTTGTGAATGTGTGAGTAGCCTATTTATAGGCGGGAGTTCAGTGCGGGATGTTAGTTAGGCCGAAGGCCCACTAACGGGTGTGCGGGTTCGGGGGAGGCCACGGAGGTCTAATATT
Gene Information
|
NCBI Accession
|
YP_001941160.1
|
|
Location
|
185-436 |
|
Gene Name
|
V1 |
|
Protein Name
|
hypothetical protein |
|
Coding Region
|
ATGGAGATTTCCCAGTATACCCCGCCTCTACCATATAGAGATCAGCTGTATACTGCTCCCGTCTCTACGGAGTCTTCTGACTTAGCCTGGCGAACCTTTGTGTTCGTGATATTTGGTTGCTTAGTTGCTGTAGGCATCATTTATCTGGCTTATACTCTTTTCCTGAAGGACTGCATTCTTGTCTGGAAGGCTAAGAGACAGAAGAAGACGGAGGAGATTGGATACGGGAATACCCCGGCGCGTCCTCAATGA |
|
Protein Sequence
|
MEISQYTPPLPYRDQLYTAPVSTESSDLAWRTFVFVIFGCLVAVGIIYLAYTLFLKDCILVWKAKRQKKTEEIGYGNTPARPQ |
|
NCBI Accession
|
YP_001941161.1
|
|
Location
|
433-1206 |
|
Gene Name
|
V2 |
|
Protein Name
|
Coat protein |
|
Coding Region
|
ATGACTGATTTAAAGTCTAAGGGGAAGCGTAAGCGGGATGAGGGGGAGTCATCTGGAAGATGGAAGGGAGCCGTATACAAGAGGCGTAAGACCCAGTACAAGGTTGTACCTGTCAGGCCACCGGCTCTCTGTGTTCTCCGTCAGCAGTGGATTACTCCGGACAAGCAGAGTGTGGTTGTTACCAACACTCCGAGGATTGATCTTATTACATGCTTTGCAGCTGGGAAGGGCGATGATAATCGCCATACTAACCAGACCATCATGTACAAGTTTCACCTGCAGGGGAGTGTGTACGTGGCGGATGCTTCCTCCAAGTTCGTAACTCCGTTGAGGTTGTATCACTGGCTCGTCTATGACGCCGAGCCTAAACAGGCCATGCCTGGTATTGAAGACATCTTCACGATGCCTTGGAATGTCCTGCCATCCACATGGACCATCTGGAGAGCCTGGGCTCACCGGTTCGTAGTGAAGAGGAAGTGGCACGTAGACCTCGTCTCAGACGGCAAGAAGGTTGGGTCGTCCACCGCTGATACGCGGTATAACTACGTAGTAGGGAAGAACATAGTCGACTGCAATAAGTTCATCAAGGGTCTCCGTGTATCCACGGAATGGATGAACACGGGTGATGGCAAGATTGGTGACATTAAGAAGGGAGCGCTGTATCTAGTTACATGTACTAGGGCTGGAGTCACTGGTGACTCTGCATCCACTGGTTTCAGTGTGGTCTGTAACTTGACACATGCGTGTTATTTCAAGTCCATTGGACTGCAATAA |
|
Protein Sequence
|
MTDLKSKGKRKRDEGESSGRWKGAVYKRRKTQYKVVPVRPPALCVLRQQWITPDKQSVVVTNTPRIDLITCFAAGKGDDNRHTNQTIMYKFHLQGSVYVADASSKFVTPLRLYHWLVYDAEPKQAMPGIEDIFTMPWNVLPSTWTIWRAWAHRFVVKRKWHVDLVSDGKKVGSSTADTRYNYVVGKNIVDCNKFIKGLRVSTEWMNTGDGKIGDIKKGALYLVTCTRAGVTGDSASTGFSVVCNLTHACYFKSIGLQ |
|
NCBI Accession
|
YP_001941162.1
|
|
Location
|
1377-1791,1887-2524 |
|
Gene Name
|
rep |
|
Protein Name
|
Replicase |
|
Coding Region
|
ATGGCTACCGTTGCTTCCAGCTCCACCAGGTTTCGCGTCTACTCCAAATATTTATTCCTTACATATCCACAATGCATCCTTGAGCCACAGTACGCCTTGGATTCTCTTCGCTCTCTCCTCCAGAAGTATAAACCACTGTATATCTGCTCCGTCAGAGAGCGACATGAAGACAATTCACCACATCTGCACGTACTCGTGCAGTGTGAGAAGAGAGCTTCAATCACCAATCCCAATGCCTTGAACCTACGGATGGACTTATCTCCATTCACCACATATCATCCCAACATCCAACCTGCCAACAACTGCAACGATGTTCGTGAGTACATCACCAAGGAGGTTGATTCTCATGAACATACTGCTGAGTGGGGAACATTCATCCACCACACAACTTCTGGTCGTCCTGATAAGGACGAAGCGATGAAGCAGATCATCGAGTCTGCTACCTCCAAGGAGGAGTTCATCAGTATGGTCAGATCTAGGTTCCCGTTTGAATGGTCTATCAACCTACAACGCTTCCAGTATACTGCTAACTATCTATTTCCTGATCCCATCCCCCAGTATACACCAGAGTTTCCAACGGAATCTCTGATATGTCATGAGACCATTCAAAACTGGGCCAACACCGAACTGTTCACTGTACGCCATAGATCCCTCTACATTTGCGGACCTACTAGAACAGGAAAGACTTCCTGGGCAAGATCTCTAGGGATCCACAACTACTACAACAGCCAAGTAGATTTCACGAACTATAATGCTGATGCATTATACAATATAATAGATGACATCCCTATTAAATATGTGCCAAACTGGAAATGCTTCCTCGGTGCTCAGAAGGATTTCACAGTCAACCCCAAGTATGGCAAGAAGAAGACAATCAGGGGTGGCATACCATGTATCGTTTTAGTAAACCCTGATGAAGACTGGCTGAAGGACATGACTCCCCTGCAGTCGGACTATTTGTACGCCAACGCCGAGATCCACTATATGGAAGATGGTGAGACATTTATCAACCATTCCTTCACCTTCGGTGAAGGGGCCACTGCTTCGCAGTGA |
|
Protein Sequence
|
MATVASSSTRFRVYSKYLFLTYPQCILEPQYALDSLRSLLQKYKPLYICSVRERHEDNSPHLHVLVQCEKRASITNPNALNLRMDLSPFTTYHPNIQPANNCNDVREYITKEVDSHEHTAEWGTFIHHTTSGRPDKDEAMKQIIESATSKEEFISMVRSRFPFEWSINLQRFQYTANYLFPDPIPQYTPEFPTESLICHETIQNWANTELFTVRHRSLYICGPTRTGKTSWARSLGIHNYYNSQVDFTNYNADALYNIIDDIPIKYVPNWKCFLGAQKDFTVNPKYGKKKTIRGGIPCIVLVNPDEDWLKDMTPLQSDYLYANAEIHYMEDGETFINHSFTFGEGATASQ |
|
NCBI Accession
|
YP_001941163.1
|
|
Location
|
1724-2524 |
|
Gene Name
|
C1-1 |
|
Protein Name
|
RepA |
|
Coding Region
|
ATGGCTACCGTTGCTTCCAGCTCCACCAGGTTTCGCGTCTACTCCAAATATTTATTCCTTACATATCCACAATGCATCCTTGAGCCACAGTACGCCTTGGATTCTCTTCGCTCTCTCCTCCAGAAGTATAAACCACTGTATATCTGCTCCGTCAGAGAGCGACATGAAGACAATTCACCACATCTGCACGTACTCGTGCAGTGTGAGAAGAGAGCTTCAATCACCAATCCCAATGCCTTGAACCTACGGATGGACTTATCTCCATTCACCACATATCATCCCAACATCCAACCTGCCAACAACTGCAACGATGTTCGTGAGTACATCACCAAGGAGGTTGATTCTCATGAACATACTGCTGAGTGGGGAACATTCATCCACCACACAACTTCTGGTCGTCCTGATAAGGACGAAGCGATGAAGCAGATCATCGAGTCTGCTACCTCCAAGGAGGAGTTCATCAGTATGGTCAGATCTAGGTTCCCGTTTGAATGGTCTATCAACCTACAACGCTTCCAGTATACTGCTAACTATCTATTTCCTGATCCCATCCCCCAGTATACACCAGAGTTTCCAACGGAATCTCTGATATGTCATGAGACCATTCAAAACTGGGCCAACACCGAACTGTTCACTGTAAGTCTAGATTCTTACATCCTTTGTAATAGCATTCCTTCGGACCAAGCTCTATCTAACCTCAGGTGGATGGATGACTATACTAGGAATCACCAGGACGCCATAGATCCCTCTACATTTGCGGACCTACTAGAACAGGAAAGACTTCCTGGGCAAGATCTCTAG |
|
Protein Sequence
|
MATVASSSTRFRVYSKYLFLTYPQCILEPQYALDSLRSLLQKYKPLYICSVRERHEDNSPHLHVLVQCEKRASITNPNALNLRMDLSPFTTYHPNIQPANNCNDVREYITKEVDSHEHTAEWGTFIHHTTSGRPDKDEAMKQIIESATSKEEFISMVRSRFPFEWSINLQRFQYTANYLFPDPIPQYTPEFPTESLICHETIQNWANTELFTVSLDSYILCNSIPSDQALSNLRWMDDYTRNHQDAIDPSTFADLLEQERLPGQDL |