Maize streak virus
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_000847105.2 |
| Isolate |
Kenya |
| Release date |
2015/7/12 |
| Submitter |
Martin,D.P., Willment,J.A., Billharz,R., Velders,R., Odhiambo,B., Njuguna,J., James,D., Rybicki,E.P. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGCGCCTTCTTTTCCTGCGAGGGCCCGGTAGGGCCCGAGCGATTTGATGTAAAGCCTGGTCCTGCTTTGTCTGATTTATCTAAAGCAGCCCAATCTAAAGAAACCGGTCCCGGGCACTATAAATTGCCTAACAAGTGCGATTCATTCATGGATCCACAGAACGCCCTGTATTATCAGCCGCGGGTACCCACAGCAGCTCCGGCATCCGCAGGAGTGCCGTGGAGTCGCGTAGGCGAGGTAGCTATTTTGAGCTTTGTTGCACTGATTTGCTTTTACCTGCTTTACCTTTGGGTGCTGAGAGACCTTATCTTAGTTCTGAAGGCTCGACAAGGCAGATCCACGGAGGAGCTGATATTTGGAGGACAAGCTGTGGATAGGAGCAACCCTATCCCTAATCTACCAGCACCACCAAGTCAGGGCAATCCCGGGCCATTTGTTCCAGGCACGGGATAAGCATTCAGCCATGTCCACGTCCAAGAGGAAGCGGGGAGATGATTCGAATTGGAGTAAGCGGGTGACTAAGAAGAAGCCCTCGTCAGCTGGGCTGAAGAGGGCTGGAAGCAAGGCCGATAGGCATTCCCTCCAAATCCAGACACTCCAGCATGCTGGGACCACCATGATAACTGTCCCATCCGGAGGAGTATGTGACCTCATCAACACCTATGCCCGAGGATCTGACGAGGGCAACCGCCACACCAGCGAGACTCTCACGTACAAGATCGCCATCGACTACCACTTCGTTGCCGACGCGGCAGCCTGCCGCTACTCCAACACCGGAACCGTGGTAATGTGGCTGGTGTATGACACCACTCCCGGCGGACAAGCTCCGACCCCGCAAACTATATTTGCCTACCCTGACACGCTAAAAGCGTGGCCGGCCACATGGAAGGTGAGCCGGGAGCTGTGTCATCGCTTCGTGGTGAAACGGCGATGGTTGTTCAACATGGAGACCGACGGGCGGATTGGTTCGGACATTCCTCCCTCGAATGCAAGTTGGAAGCCTTGCAAGCGCAACATCTACTTCCACAAGTTCACGAGCGGGTTGGGAGTGAGAACGCAGTGGAAGAATGTAACGGACGGAGGAGTTGGTGCCATCCAGAGAGGAGCGTTGTACATGGTCATTGCCCCCGGCAATGGTCTTACATTTACTGCCCATGGGCAGACCCGTCTGTACTTTAAGAGTGTTGGCAACCAGTAATGAATAAAAACTCCCGTTTTATTATATCTGATGAATGCTGAAAGCTTACATTAATATGTCGTGCGATGGCACGAAAAAACACACGCAATCAATACAGGGGGGTAGTAGGCGGGCGGCTAAGGGTGGTGCTCGGCGGGCAGAACATCGAAAAATCAAGATCTATCTGAATGTACTGCCTCCGTAGGAGGCAGCTCAGGGGGAGAATACCACTTCTCCCCCGGCGACATAATGTAAATGACGCAATTTGCCTCGAAATACTCCAGCTGCCCTGGAGTCATTTCCTTCATCCAATCTTCATCCGAGTTGGCGAGTATTATTGTAGGCTTAGACTTCTTCTGCACCTTCTTCTTCTTACCATACTTGGGGTTTACAATGAAATCCCTCTGACAGCCAACTAACTGTTTCCAACAAGGACAGAATTTAAACGGAATATCATCTACGATGTTGTAGATTGCGTCTTCGTTGTATGAAGACCAATCAACATTATTTTGCCAGTAATTATGAACCCCTAGGCTTCTGGCCCAAGTAGATTTTCCGGTTCTTGTTGGCCCGACGATGTAGAGGCTCTGCTTTCTTGATCTTTCATCTGATGACTGGATACAGAATCCATCCATTGGAGGTCAGAAATTGCATCCTCGAGGGTATAACAGGTAGGTTGAAGGAGCATGTATGCTTCGGGACTAACCTGGAAGATGTTAGGCTGGAGCCAATCATTGATTGACTCATTACAAAGTAAATCAGGTGAGGAGGGTGGATGAGGATTGGTGAACTCTTCCTGAATCTCAGGAAAAAGCTTATTTGCAGAGTATTCAAAATACTGCAATTTTGTGGACCAATCAAAGGGAAGCTCTTTCTGGATCATGGAGAGGTACTCTTCTTTGGAAGTAGCGTGTGAAATAATGTCTCGCATTATTTCATCTTTAGAAGGCTTTTTTTCCTTTACCTCTGAATCAGATTTTCCTAGGAAGGGGGACTTCCTAGGAATGAAAGTACCTCTCTCAAACACAGCCAGAGGTTCCTTGAGAATGTAATCCCTCACCCTGTTTACTGACTTGGCACTCTGAATATTTGGGTGAAACCCATTTATATCAAAGAACCTTGAGTCAGATATCCTTACCGGCTTCTCTGTCTGAAGCAATGCATGTAAATGCAAACTTCCATCTTTATGTGCCTCTCGGGCACATAGAATATATTTGGGAATCCAACGAACAACGAGCTCCCAGATCATCTGGCAGGCGATTTCAGGATTTTCTGGACACTTTGGATAGGTTAGGAACGTGTTAGCGTTCCTGTGTGAGAACTGACGGTTGGATGAGGAGGAGGCCATAGCCGACGACGGAGGATGAGGCTGAGGGATGGCAGACTGGGAGCTCCAAACTCTATAGTATACCTGTGCGCCTTCGAAATCCGCCGCTCCCTTGTCTTATAGTGGTTGTAAATGGGCCGGACCGGGCCGGCCCAGCAGGAAAAGAAGGCGCGCACTAATATT
Gene Information
|
NCBI Accession
|
YP_009154761.1
|
|
Location
|
150-455 |
|
Gene Name
|
V2 |
|
Protein Name
|
movement protein |
|
Coding Region
|
ATGGATCCACAGAACGCCCTGTATTATCAGCCGCGGGTACCCACAGCAGCTCCGGCATCCGCAGGAGTGCCGTGGAGTCGCGTAGGCGAGGTAGCTATTTTGAGCTTTGTTGCACTGATTTGCTTTTACCTGCTTTACCTTTGGGTGCTGAGAGACCTTATCTTAGTTCTGAAGGCTCGACAAGGCAGATCCACGGAGGAGCTGATATTTGGAGGACAAGCTGTGGATAGGAGCAACCCTATCCCTAATCTACCAGCACCACCAAGTCAGGGCAATCCCGGGCCATTTGTTCCAGGCACGGGATAA |
|
Protein Sequence
|
MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLLYLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG |
|
NCBI Accession
|
YP_009154762.1
|
|
Location
|
466-1200 |
|
Gene Name
|
V1 |
|
Protein Name
|
capsid protein |
|
Coding Region
|
ATGTCCACGTCCAAGAGGAAGCGGGGAGATGATTCGAATTGGAGTAAGCGGGTGACTAAGAAGAAGCCCTCGTCAGCTGGGCTGAAGAGGGCTGGAAGCAAGGCCGATAGGCATTCCCTCCAAATCCAGACACTCCAGCATGCTGGGACCACCATGATAACTGTCCCATCCGGAGGAGTATGTGACCTCATCAACACCTATGCCCGAGGATCTGACGAGGGCAACCGCCACACCAGCGAGACTCTCACGTACAAGATCGCCATCGACTACCACTTCGTTGCCGACGCGGCAGCCTGCCGCTACTCCAACACCGGAACCGTGGTAATGTGGCTGGTGTATGACACCACTCCCGGCGGACAAGCTCCGACCCCGCAAACTATATTTGCCTACCCTGACACGCTAAAAGCGTGGCCGGCCACATGGAAGGTGAGCCGGGAGCTGTGTCATCGCTTCGTGGTGAAACGGCGATGGTTGTTCAACATGGAGACCGACGGGCGGATTGGTTCGGACATTCCTCCCTCGAATGCAAGTTGGAAGCCTTGCAAGCGCAACATCTACTTCCACAAGTTCACGAGCGGGTTGGGAGTGAGAACGCAGTGGAAGAATGTAACGGACGGAGGAGTTGGTGCCATCCAGAGAGGAGCGTTGTACATGGTCATTGCCCCCGGCAATGGTCTTACATTTACTGCCCATGGGCAGACCCGTCTGTACTTTAAGAGTGTTGGCAACCAGTAA |
|
Protein Sequence
|
MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRHSLQIQTLQHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNTGTVVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMETDGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAPGNGLTFTAHGQTRLYFKSVGNQ |
|
NCBI Accession
|
YP_009154763.1
|
|
Location
|
1353-1793,1886-2527 |
|
Gene Name
|
C1/C2 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGGCCTCCTCCTCATCCAACCGTCAGTTCTCACACAGGAACGCTAACACGTTCCTAACCTATCCAAAGTGTCCAGAAAATCCTGAAATCGCCTGCCAGATGATCTGGGAGCTCGTTGTTCGTTGGATTCCCAAATATATTCTATGTGCCCGAGAGGCACATAAAGATGGAAGTTTGCATTTACATGCATTGCTTCAGACAGAGAAGCCGGTAAGGATATCTGACTCAAGGTTCTTTGATATAAATGGGTTTCACCCAAATATTCAGAGTGCCAAGTCAGTAAACAGGGTGAGGGATTACATTCTCAAGGAACCTCTGGCTGTGTTTGAGAGAGGTACTTTCATTCCTAGGAAGTCCCCCTTCCTAGGAAAATCTGATTCAGAGGTAAAGGAAAAAAAGCCTTCTAAAGATGAAATAATGCGAGACATTATTTCACACGCTACTTCCAAAGAAGAGTACCTCTCCATGATCCAGAAAGAGCTTCCCTTTGATTGGTCCACAAAATTGCAGTATTTTGAATACTCTGCAAATAAGCTTTTTCCTGAGATTCAGGAAGAGTTCACCAATCCTCATCCACCCTCCTCACCTGATTTACTTTGTAATGAGTCAATCAATGATTGGCTCCAGCCTAACATCTTCCAGTCATCAGATGAAAGATCAAGAAAGCAGAGCCTCTACATCGTCGGGCCAACAAGAACCGGAAAATCTACTTGGGCCAGAAGCCTAGGGGTTCATAATTACTGGCAAAATAATGTTGATTGGTCTTCATACAACGAAGACGCAATCTACAACATCGTAGATGATATTCCGTTTAAATTCTGTCCTTGTTGGAAACAGTTAGTTGGCTGTCAGAGGGATTTCATTGTAAACCCCAAGTATGGTAAGAAGAAGAAGGTGCAGAAGAAGTCTAAGCCTACAATAATACTCGCCAACTCGGATGAAGATTGGATGAAGGAAATGACTCCAGGGCAGCTGGAGTATTTCGAGGCAAATTGCGTCATTTACATTATGTCGCCGGGGGAGAAGTGGTATTCTCCCCCTGAGCTGCCTCCTACGGAGGCAGTACATTCAGATAGATCTTGA |
|
Protein Sequence
|
MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPKYILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKEPLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKEEYLSMIQKELPFDWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQSSDERSRKQSLYIVGPTRTGKSTWARSLGVHNYWQNNVDWSSYNEDAIYNIVDDIPFKFCPCWKQLVGCQRDFIVNPKYGKKKKVQKKSKPTIILANSDEDWMKEMTPGQLEYFEANCVIYIMSPGEKWYSPPELPPTEAVHSDRS |
|
NCBI Accession
|
YP_009154764.1
|
|
Location
|
1709-2527 |
|
Gene Name
|
C1 |
|
Protein Name
|
replication-associated protein A |
|
Coding Region
|
ATGGCCTCCTCCTCATCCAACCGTCAGTTCTCACACAGGAACGCTAACACGTTCCTAACCTATCCAAAGTGTCCAGAAAATCCTGAAATCGCCTGCCAGATGATCTGGGAGCTCGTTGTTCGTTGGATTCCCAAATATATTCTATGTGCCCGAGAGGCACATAAAGATGGAAGTTTGCATTTACATGCATTGCTTCAGACAGAGAAGCCGGTAAGGATATCTGACTCAAGGTTCTTTGATATAAATGGGTTTCACCCAAATATTCAGAGTGCCAAGTCAGTAAACAGGGTGAGGGATTACATTCTCAAGGAACCTCTGGCTGTGTTTGAGAGAGGTACTTTCATTCCTAGGAAGTCCCCCTTCCTAGGAAAATCTGATTCAGAGGTAAAGGAAAAAAAGCCTTCTAAAGATGAAATAATGCGAGACATTATTTCACACGCTACTTCCAAAGAAGAGTACCTCTCCATGATCCAGAAAGAGCTTCCCTTTGATTGGTCCACAAAATTGCAGTATTTTGAATACTCTGCAAATAAGCTTTTTCCTGAGATTCAGGAAGAGTTCACCAATCCTCATCCACCCTCCTCACCTGATTTACTTTGTAATGAGTCAATCAATGATTGGCTCCAGCCTAACATCTTCCAGGTTAGTCCCGAAGCATACATGCTCCTTCAACCTACCTGTTATACCCTCGAGGATGCAATTTCTGACCTCCAATGGATGGATTCTGTATCCAGTCATCAGATGAAAGATCAAGAAAGCAGAGCCTCTACATCGTCGGGCCAACAAGAACCGGAAAATCTACTTGGGCCAGAAGCCTAG |
|
Protein Sequence
|
MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPKYILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKEPLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKEEYLSMIQKELPFDWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYMLLQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSGQQEPENLLGPEA |