Maize streak virus


Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000847105.2
Isolate Kenya
Release date 2015/7/12
Submitter Martin,D.P., Willment,J.A., Billharz,R., Velders,R., Odhiambo,B., Njuguna,J., James,D., Rybicki,E.P.
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_001346
ACCGCGCCTTCTTTTCCTGCGAGGGCCCGGTAGGGCCCGAGCGATTTGATGTAAAGCCTGGTCCTGCTTTGTCTGATTTATCTAAAGCAGCCCAATCTAAAGAAACCGGTCCCGGGCACTATAAATTGCCTAACAAGTGCGATTCATTCATGGATCCACAGAACGCCCTGTATTATCAGCCGCGGGTACCCACAGCAGCTCCGGCATCCGCAGGAGTGCCGTGGAGTCGCGTAGGCGAGGTAGCTATTTTGAGCTTTGTTGCACTGATTTGCTTTTACCTGCTTTACCTTTGGGTGCTGAGAGACCTTATCTTAGTTCTGAAGGCTCGACAAGGCAGATCCACGGAGGAGCTGATATTTGGAGGACAAGCTGTGGATAGGAGCAACCCTATCCCTAATCTACCAGCACCACCAAGTCAGGGCAATCCCGGGCCATTTGTTCCAGGCACGGGATAAGCATTCAGCCATGTCCACGTCCAAGAGGAAGCGGGGAGATGATTCGAATTGGAGTAAGCGGGTGACTAAGAAGAAGCCCTCGTCAGCTGGGCTGAAGAGGGCTGGAAGCAAGGCCGATAGGCATTCCCTCCAAATCCAGACACTCCAGCATGCTGGGACCACCATGATAACTGTCCCATCCGGAGGAGTATGTGACCTCATCAACACCTATGCCCGAGGATCTGACGAGGGCAACCGCCACACCAGCGAGACTCTCACGTACAAGATCGCCATCGACTACCACTTCGTTGCCGACGCGGCAGCCTGCCGCTACTCCAACACCGGAACCGTGGTAATGTGGCTGGTGTATGACACCACTCCCGGCGGACAAGCTCCGACCCCGCAAACTATATTTGCCTACCCTGACACGCTAAAAGCGTGGCCGGCCACATGGAAGGTGAGCCGGGAGCTGTGTCATCGCTTCGTGGTGAAACGGCGATGGTTGTTCAACATGGAGACCGACGGGCGGATTGGTTCGGACATTCCTCCCTCGAATGCAAGTTGGAAGCCTTGCAAGCGCAACATCTACTTCCACAAGTTCACGAGCGGGTTGGGAGTGAGAACGCAGTGGAAGAATGTAACGGACGGAGGAGTTGGTGCCATCCAGAGAGGAGCGTTGTACATGGTCATTGCCCCCGGCAATGGTCTTACATTTACTGCCCATGGGCAGACCCGTCTGTACTTTAAGAGTGTTGGCAACCAGTAATGAATAAAAACTCCCGTTTTATTATATCTGATGAATGCTGAAAGCTTACATTAATATGTCGTGCGATGGCACGAAAAAACACACGCAATCAATACAGGGGGGTAGTAGGCGGGCGGCTAAGGGTGGTGCTCGGCGGGCAGAACATCGAAAAATCAAGATCTATCTGAATGTACTGCCTCCGTAGGAGGCAGCTCAGGGGGAGAATACCACTTCTCCCCCGGCGACATAATGTAAATGACGCAATTTGCCTCGAAATACTCCAGCTGCCCTGGAGTCATTTCCTTCATCCAATCTTCATCCGAGTTGGCGAGTATTATTGTAGGCTTAGACTTCTTCTGCACCTTCTTCTTCTTACCATACTTGGGGTTTACAATGAAATCCCTCTGACAGCCAACTAACTGTTTCCAACAAGGACAGAATTTAAACGGAATATCATCTACGATGTTGTAGATTGCGTCTTCGTTGTATGAAGACCAATCAACATTATTTTGCCAGTAATTATGAACCCCTAGGCTTCTGGCCCAAGTAGATTTTCCGGTTCTTGTTGGCCCGACGATGTAGAGGCTCTGCTTTCTTGATCTTTCATCTGATGACTGGATACAGAATCCATCCATTGGAGGTCAGAAATTGCATCCTCGAGGGTATAACAGGTAGGTTGAAGGAGCATGTATGCTTCGGGACTAACCTGGAAGATGTTAGGCTGGAGCCAATCATTGATTGACTCATTACAAAGTAAATCAGGTGAGGAGGGTGGATGAGGATTGGTGAACTCTTCCTGAATCTCAGGAAAAAGCTTATTTGCAGAGTATTCAAAATACTGCAATTTTGTGGACCAATCAAAGGGAAGCTCTTTCTGGATCATGGAGAGGTACTCTTCTTTGGAAGTAGCGTGTGAAATAATGTCTCGCATTATTTCATCTTTAGAAGGCTTTTTTTCCTTTACCTCTGAATCAGATTTTCCTAGGAAGGGGGACTTCCTAGGAATGAAAGTACCTCTCTCAAACACAGCCAGAGGTTCCTTGAGAATGTAATCCCTCACCCTGTTTACTGACTTGGCACTCTGAATATTTGGGTGAAACCCATTTATATCAAAGAACCTTGAGTCAGATATCCTTACCGGCTTCTCTGTCTGAAGCAATGCATGTAAATGCAAACTTCCATCTTTATGTGCCTCTCGGGCACATAGAATATATTTGGGAATCCAACGAACAACGAGCTCCCAGATCATCTGGCAGGCGATTTCAGGATTTTCTGGACACTTTGGATAGGTTAGGAACGTGTTAGCGTTCCTGTGTGAGAACTGACGGTTGGATGAGGAGGAGGCCATAGCCGACGACGGAGGATGAGGCTGAGGGATGGCAGACTGGGAGCTCCAAACTCTATAGTATACCTGTGCGCCTTCGAAATCCGCCGCTCCCTTGTCTTATAGTGGTTGTAAATGGGCCGGACCGGGCCGGCCCAGCAGGAAAAGAAGGCGCGCACTAATATT

Gene Information

NCBI Accession YP_009154761.1
Location 150-455
Gene Name V2
Protein Name movement protein
Coding Region ATGGATCCACAGAACGCCCTGTATTATCAGCCGCGGGTACCCACAGCAGCTCCGGCATCCGCAGGAGTGCCGTGGAGTCGCGTAGGCGAGGTAGCTATTTTGAGCTTTGTTGCACTGATTTGCTTTTACCTGCTTTACCTTTGGGTGCTGAGAGACCTTATCTTAGTTCTGAAGGCTCGACAAGGCAGATCCACGGAGGAGCTGATATTTGGAGGACAAGCTGTGGATAGGAGCAACCCTATCCCTAATCTACCAGCACCACCAAGTCAGGGCAATCCCGGGCCATTTGTTCCAGGCACGGGATAA
Protein Sequence MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLLYLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG

NCBI Accession YP_009154762.1
Location 466-1200
Gene Name V1
Protein Name capsid protein
Coding Region ATGTCCACGTCCAAGAGGAAGCGGGGAGATGATTCGAATTGGAGTAAGCGGGTGACTAAGAAGAAGCCCTCGTCAGCTGGGCTGAAGAGGGCTGGAAGCAAGGCCGATAGGCATTCCCTCCAAATCCAGACACTCCAGCATGCTGGGACCACCATGATAACTGTCCCATCCGGAGGAGTATGTGACCTCATCAACACCTATGCCCGAGGATCTGACGAGGGCAACCGCCACACCAGCGAGACTCTCACGTACAAGATCGCCATCGACTACCACTTCGTTGCCGACGCGGCAGCCTGCCGCTACTCCAACACCGGAACCGTGGTAATGTGGCTGGTGTATGACACCACTCCCGGCGGACAAGCTCCGACCCCGCAAACTATATTTGCCTACCCTGACACGCTAAAAGCGTGGCCGGCCACATGGAAGGTGAGCCGGGAGCTGTGTCATCGCTTCGTGGTGAAACGGCGATGGTTGTTCAACATGGAGACCGACGGGCGGATTGGTTCGGACATTCCTCCCTCGAATGCAAGTTGGAAGCCTTGCAAGCGCAACATCTACTTCCACAAGTTCACGAGCGGGTTGGGAGTGAGAACGCAGTGGAAGAATGTAACGGACGGAGGAGTTGGTGCCATCCAGAGAGGAGCGTTGTACATGGTCATTGCCCCCGGCAATGGTCTTACATTTACTGCCCATGGGCAGACCCGTCTGTACTTTAAGAGTGTTGGCAACCAGTAA
Protein Sequence MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRHSLQIQTLQHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNTGTVVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMETDGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAPGNGLTFTAHGQTRLYFKSVGNQ

NCBI Accession YP_009154763.1
Location 1353-1793,1886-2527
Gene Name C1/C2
Protein Name replication-associated protein
Coding Region ATGGCCTCCTCCTCATCCAACCGTCAGTTCTCACACAGGAACGCTAACACGTTCCTAACCTATCCAAAGTGTCCAGAAAATCCTGAAATCGCCTGCCAGATGATCTGGGAGCTCGTTGTTCGTTGGATTCCCAAATATATTCTATGTGCCCGAGAGGCACATAAAGATGGAAGTTTGCATTTACATGCATTGCTTCAGACAGAGAAGCCGGTAAGGATATCTGACTCAAGGTTCTTTGATATAAATGGGTTTCACCCAAATATTCAGAGTGCCAAGTCAGTAAACAGGGTGAGGGATTACATTCTCAAGGAACCTCTGGCTGTGTTTGAGAGAGGTACTTTCATTCCTAGGAAGTCCCCCTTCCTAGGAAAATCTGATTCAGAGGTAAAGGAAAAAAAGCCTTCTAAAGATGAAATAATGCGAGACATTATTTCACACGCTACTTCCAAAGAAGAGTACCTCTCCATGATCCAGAAAGAGCTTCCCTTTGATTGGTCCACAAAATTGCAGTATTTTGAATACTCTGCAAATAAGCTTTTTCCTGAGATTCAGGAAGAGTTCACCAATCCTCATCCACCCTCCTCACCTGATTTACTTTGTAATGAGTCAATCAATGATTGGCTCCAGCCTAACATCTTCCAGTCATCAGATGAAAGATCAAGAAAGCAGAGCCTCTACATCGTCGGGCCAACAAGAACCGGAAAATCTACTTGGGCCAGAAGCCTAGGGGTTCATAATTACTGGCAAAATAATGTTGATTGGTCTTCATACAACGAAGACGCAATCTACAACATCGTAGATGATATTCCGTTTAAATTCTGTCCTTGTTGGAAACAGTTAGTTGGCTGTCAGAGGGATTTCATTGTAAACCCCAAGTATGGTAAGAAGAAGAAGGTGCAGAAGAAGTCTAAGCCTACAATAATACTCGCCAACTCGGATGAAGATTGGATGAAGGAAATGACTCCAGGGCAGCTGGAGTATTTCGAGGCAAATTGCGTCATTTACATTATGTCGCCGGGGGAGAAGTGGTATTCTCCCCCTGAGCTGCCTCCTACGGAGGCAGTACATTCAGATAGATCTTGA
Protein Sequence MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPKYILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKEPLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKEEYLSMIQKELPFDWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQSSDERSRKQSLYIVGPTRTGKSTWARSLGVHNYWQNNVDWSSYNEDAIYNIVDDIPFKFCPCWKQLVGCQRDFIVNPKYGKKKKVQKKSKPTIILANSDEDWMKEMTPGQLEYFEANCVIYIMSPGEKWYSPPELPPTEAVHSDRS

NCBI Accession YP_009154764.1
Location 1709-2527
Gene Name C1
Protein Name replication-associated protein A
Coding Region ATGGCCTCCTCCTCATCCAACCGTCAGTTCTCACACAGGAACGCTAACACGTTCCTAACCTATCCAAAGTGTCCAGAAAATCCTGAAATCGCCTGCCAGATGATCTGGGAGCTCGTTGTTCGTTGGATTCCCAAATATATTCTATGTGCCCGAGAGGCACATAAAGATGGAAGTTTGCATTTACATGCATTGCTTCAGACAGAGAAGCCGGTAAGGATATCTGACTCAAGGTTCTTTGATATAAATGGGTTTCACCCAAATATTCAGAGTGCCAAGTCAGTAAACAGGGTGAGGGATTACATTCTCAAGGAACCTCTGGCTGTGTTTGAGAGAGGTACTTTCATTCCTAGGAAGTCCCCCTTCCTAGGAAAATCTGATTCAGAGGTAAAGGAAAAAAAGCCTTCTAAAGATGAAATAATGCGAGACATTATTTCACACGCTACTTCCAAAGAAGAGTACCTCTCCATGATCCAGAAAGAGCTTCCCTTTGATTGGTCCACAAAATTGCAGTATTTTGAATACTCTGCAAATAAGCTTTTTCCTGAGATTCAGGAAGAGTTCACCAATCCTCATCCACCCTCCTCACCTGATTTACTTTGTAATGAGTCAATCAATGATTGGCTCCAGCCTAACATCTTCCAGGTTAGTCCCGAAGCATACATGCTCCTTCAACCTACCTGTTATACCCTCGAGGATGCAATTTCTGACCTCCAATGGATGGATTCTGTATCCAGTCATCAGATGAAAGATCAAGAAAGCAGAGCCTCTACATCGTCGGGCCAACAAGAACCGGAAAATCTACTTGGGCCAGAAGCCTAG
Protein Sequence MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPKYILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKEPLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKEEYLSMIQKELPFDWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYMLLQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSGQQEPENLLGPEA

References More References in PubMed

1

Maize streak virus research in Africa: an end or a crossroad.

Emeraghi M, et al.  Theor Appl Genet. 2021 Dec;134(12):3785-3803. doi: 10.1007/s00122-021-03914-y. Epub 2021 Jul 26.

PMID: 34309683

2

Eight decades of maize streak virus research.

Bosque-Pérez NA.  Virus Res. 2000 Nov;71(1-2):107-21. doi: 10.1016/s0168-1702(00)00192-1.

PMID: 11137166

3

Maize streak virus: an old and complex 'emerging' pathogen.

Shepherd DN, et al.  Mol Plant Pathol. 2010 Jan;11(1):1-12. doi: 10.1111/j.1364-3703.2009.00568.x.

PMID: 20078771

4

Inducible resistance to maize streak virus.

Shepherd DN, et al.  PLoS One. 2014 Aug 28;9(8):e105932. doi: 10.1371/journal.pone.0105932. eCollection 2014.

PMID: 25166274

5

Symptom evolution following the emergence of maize streak virus.

Monjane AL, et al.  Elife. 2020 Jan 15;9:e51984. doi: 10.7554/eLife.51984.

PMID: 31939738

6

A quick and sensitive diagnostic tool for detection of Maize streak virus.

Tembo M, et al.  Sci Rep. 2020 Nov 12;10(1):19633. doi: 10.1038/s41598-020-76612-2.

PMID: 33184360

7

An optimal control model with cost effectiveness analysis of Maize streak virus disease in maize plant.

Alemneh HT, et al.  Infect Dis Model. 2020 Dec 28;6:169-182. doi: 10.1016/j.idm.2020.12.001. eCollection 2021.

PMID: 33474519

8

Maize necrotic streak virus, a New Maize Virus with Similarity to Species of the Family Tombusviridae.

Louie R, et al.  Plant Dis. 2000 Oct;84(10):1133-1139. doi: 10.1094/PDIS.2000.84.10.1133.

PMID: 30831907

9

The role of Kenya in the trans-African spread of maize streak virus strain A.

Pande D, et al.  Virus Res. 2017 Mar 15;232:69-76. doi: 10.1016/j.virusres.2017.02.005. Epub 2017 Feb 9.

PMID: 28192163

10

Studies on Maize streak virus and Maize mottle/chlorotic stunt virus in Lagos, Nigeria.

Taiwo MA, et al.  Plant Dis. 2006 Feb;90(2):199-202. doi: 10.1094/PD-90-0199.

PMID: 30786412