Maize streak virus
Basic Information
| Genus | Mastrevirus |
|---|---|
| NCBI Assembly | GCF_000847105.2 |
| Isolate | Kenya |
| Release date | 2015/7/12 |
| Submitter | Martin,D.P., Willment,J.A., Billharz,R., Velders,R., Odhiambo,B., Njuguna,J., James,D., Rybicki,E.P. |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_001346
Gene Information
| NCBI Accession | YP_009154761.1 |
|---|---|
| Location | 150-455 |
| Gene Name | V2 |
| Protein Name | movement protein |
| Coding Region | ATGGATCCACAGAACGCCCTGTATTATCAGCCGCGGGTACCCACAGCAGCTCCGGCATCCGCAGGAGTGCCGTGGAGTCGCGTAGGCGAGGTAGCTATTTTGAGCTTTGTTGCACTGATTTGCTTTTACCTGCTTTACCTTTGGGTGCTGAGAGACCTTATCTTAGTTCTGAAGGCTCGACAAGGCAGATCCACGGAGGAGCTGATATTTGGAGGACAAGCTGTGGATAGGAGCAACCCTATCCCTAATCTACCAGCACCACCAAGTCAGGGCAATCCCGGGCCATTTGTTCCAGGCACGGGATAA |
| Protein Sequence | MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLLYLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG |
| NCBI Accession | YP_009154762.1 |
|---|---|
| Location | 466-1200 |
| Gene Name | V1 |
| Protein Name | capsid protein |
| Coding Region | ATGTCCACGTCCAAGAGGAAGCGGGGAGATGATTCGAATTGGAGTAAGCGGGTGACTAAGAAGAAGCCCTCGTCAGCTGGGCTGAAGAGGGCTGGAAGCAAGGCCGATAGGCATTCCCTCCAAATCCAGACACTCCAGCATGCTGGGACCACCATGATAACTGTCCCATCCGGAGGAGTATGTGACCTCATCAACACCTATGCCCGAGGATCTGACGAGGGCAACCGCCACACCAGCGAGACTCTCACGTACAAGATCGCCATCGACTACCACTTCGTTGCCGACGCGGCAGCCTGCCGCTACTCCAACACCGGAACCGTGGTAATGTGGCTGGTGTATGACACCACTCCCGGCGGACAAGCTCCGACCCCGCAAACTATATTTGCCTACCCTGACACGCTAAAAGCGTGGCCGGCCACATGGAAGGTGAGCCGGGAGCTGTGTCATCGCTTCGTGGTGAAACGGCGATGGTTGTTCAACATGGAGACCGACGGGCGGATTGGTTCGGACATTCCTCCCTCGAATGCAAGTTGGAAGCCTTGCAAGCGCAACATCTACTTCCACAAGTTCACGAGCGGGTTGGGAGTGAGAACGCAGTGGAAGAATGTAACGGACGGAGGAGTTGGTGCCATCCAGAGAGGAGCGTTGTACATGGTCATTGCCCCCGGCAATGGTCTTACATTTACTGCCCATGGGCAGACCCGTCTGTACTTTAAGAGTGTTGGCAACCAGTAA |
| Protein Sequence | MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRHSLQIQTLQHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNTGTVVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMETDGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAPGNGLTFTAHGQTRLYFKSVGNQ |
| NCBI Accession | YP_009154763.1 |
|---|---|
| Location | 1353-1793,1886-2527 |
| Gene Name | C1/C2 |
| Protein Name | replication-associated protein |
| Coding Region | ATGGCCTCCTCCTCATCCAACCGTCAGTTCTCACACAGGAACGCTAACACGTTCCTAACCTATCCAAAGTGTCCAGAAAATCCTGAAATCGCCTGCCAGATGATCTGGGAGCTCGTTGTTCGTTGGATTCCCAAATATATTCTATGTGCCCGAGAGGCACATAAAGATGGAAGTTTGCATTTACATGCATTGCTTCAGACAGAGAAGCCGGTAAGGATATCTGACTCAAGGTTCTTTGATATAAATGGGTTTCACCCAAATATTCAGAGTGCCAAGTCAGTAAACAGGGTGAGGGATTACATTCTCAAGGAACCTCTGGCTGTGTTTGAGAGAGGTACTTTCATTCCTAGGAAGTCCCCCTTCCTAGGAAAATCTGATTCAGAGGTAAAGGAAAAAAAGCCTTCTAAAGATGAAATAATGCGAGACATTATTTCACACGCTACTTCCAAAGAAGAGTACCTCTCCATGATCCAGAAAGAGCTTCCCTTTGATTGGTCCACAAAATTGCAGTATTTTGAATACTCTGCAAATAAGCTTTTTCCTGAGATTCAGGAAGAGTTCACCAATCCTCATCCACCCTCCTCACCTGATTTACTTTGTAATGAGTCAATCAATGATTGGCTCCAGCCTAACATCTTCCAGTCATCAGATGAAAGATCAAGAAAGCAGAGCCTCTACATCGTCGGGCCAACAAGAACCGGAAAATCTACTTGGGCCAGAAGCCTAGGGGTTCATAATTACTGGCAAAATAATGTTGATTGGTCTTCATACAACGAAGACGCAATCTACAACATCGTAGATGATATTCCGTTTAAATTCTGTCCTTGTTGGAAACAGTTAGTTGGCTGTCAGAGGGATTTCATTGTAAACCCCAAGTATGGTAAGAAGAAGAAGGTGCAGAAGAAGTCTAAGCCTACAATAATACTCGCCAACTCGGATGAAGATTGGATGAAGGAAATGACTCCAGGGCAGCTGGAGTATTTCGAGGCAAATTGCGTCATTTACATTATGTCGCCGGGGGAGAAGTGGTATTCTCCCCCTGAGCTGCCTCCTACGGAGGCAGTACATTCAGATAGATCTTGA |
| Protein Sequence | MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPKYILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKEPLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKEEYLSMIQKELPFDWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQSSDERSRKQSLYIVGPTRTGKSTWARSLGVHNYWQNNVDWSSYNEDAIYNIVDDIPFKFCPCWKQLVGCQRDFIVNPKYGKKKKVQKKSKPTIILANSDEDWMKEMTPGQLEYFEANCVIYIMSPGEKWYSPPELPPTEAVHSDRS |
| NCBI Accession | YP_009154764.1 |
|---|---|
| Location | 1709-2527 |
| Gene Name | C1 |
| Protein Name | replication-associated protein A |
| Coding Region | ATGGCCTCCTCCTCATCCAACCGTCAGTTCTCACACAGGAACGCTAACACGTTCCTAACCTATCCAAAGTGTCCAGAAAATCCTGAAATCGCCTGCCAGATGATCTGGGAGCTCGTTGTTCGTTGGATTCCCAAATATATTCTATGTGCCCGAGAGGCACATAAAGATGGAAGTTTGCATTTACATGCATTGCTTCAGACAGAGAAGCCGGTAAGGATATCTGACTCAAGGTTCTTTGATATAAATGGGTTTCACCCAAATATTCAGAGTGCCAAGTCAGTAAACAGGGTGAGGGATTACATTCTCAAGGAACCTCTGGCTGTGTTTGAGAGAGGTACTTTCATTCCTAGGAAGTCCCCCTTCCTAGGAAAATCTGATTCAGAGGTAAAGGAAAAAAAGCCTTCTAAAGATGAAATAATGCGAGACATTATTTCACACGCTACTTCCAAAGAAGAGTACCTCTCCATGATCCAGAAAGAGCTTCCCTTTGATTGGTCCACAAAATTGCAGTATTTTGAATACTCTGCAAATAAGCTTTTTCCTGAGATTCAGGAAGAGTTCACCAATCCTCATCCACCCTCCTCACCTGATTTACTTTGTAATGAGTCAATCAATGATTGGCTCCAGCCTAACATCTTCCAGGTTAGTCCCGAAGCATACATGCTCCTTCAACCTACCTGTTATACCCTCGAGGATGCAATTTCTGACCTCCAATGGATGGATTCTGTATCCAGTCATCAGATGAAAGATCAAGAAAGCAGAGCCTCTACATCGTCGGGCCAACAAGAACCGGAAAATCTACTTGGGCCAGAAGCCTAG |
| Protein Sequence | MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPKYILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKEPLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKEEYLSMIQKELPFDWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYMLLQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSGQQEPENLLGPEA |
References More References in PubMed
| 1 |
Maize streak virus research in Africa: an end or a crossroad. Emeraghi M, et al. Theor Appl Genet. 2021 Dec;134(12):3785-3803. doi: 10.1007/s00122-021-03914-y. Epub 2021 Jul 26. PMID: 34309683 |
|---|---|
| 2 |
Eight decades of maize streak virus research. Bosque-Pérez NA. Virus Res. 2000 Nov;71(1-2):107-21. doi: 10.1016/s0168-1702(00)00192-1. PMID: 11137166 |
| 3 |
Maize streak virus: an old and complex 'emerging' pathogen. Shepherd DN, et al. Mol Plant Pathol. 2010 Jan;11(1):1-12. doi: 10.1111/j.1364-3703.2009.00568.x. PMID: 20078771 |
| 4 |
Inducible resistance to maize streak virus. Shepherd DN, et al. PLoS One. 2014 Aug 28;9(8):e105932. doi: 10.1371/journal.pone.0105932. eCollection 2014. PMID: 25166274 |
| 5 |
Symptom evolution following the emergence of maize streak virus. Monjane AL, et al. Elife. 2020 Jan 15;9:e51984. doi: 10.7554/eLife.51984. PMID: 31939738 |
| 6 |
A quick and sensitive diagnostic tool for detection of Maize streak virus. Tembo M, et al. Sci Rep. 2020 Nov 12;10(1):19633. doi: 10.1038/s41598-020-76612-2. PMID: 33184360 |
| 7 |
Alemneh HT, et al. Infect Dis Model. 2020 Dec 28;6:169-182. doi: 10.1016/j.idm.2020.12.001. eCollection 2021. PMID: 33474519 |
| 8 |
Louie R, et al. Plant Dis. 2000 Oct;84(10):1133-1139. doi: 10.1094/PDIS.2000.84.10.1133. PMID: 30831907 |
| 9 |
The role of Kenya in the trans-African spread of maize streak virus strain A. Pande D, et al. Virus Res. 2017 Mar 15;232:69-76. doi: 10.1016/j.virusres.2017.02.005. Epub 2017 Feb 9. PMID: 28192163 |
| 10 |
Studies on Maize streak virus and Maize mottle/chlorotic stunt virus in Lagos, Nigeria. Taiwo MA, et al. Plant Dis. 2006 Feb;90(2):199-202. doi: 10.1094/PD-90-0199. PMID: 30786412 |