Maize streak dwarfing virus
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_013088405.1 |
| Isolate |
Ethiopia: Adama Zuria |
| Release date |
2021/6/1 |
| Submitter |
Guadie,D., Tesfaye,K., Knierim,D., Winter,S., Abraham,A. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
GCAGCGATTTTGGGGCCCAGGAAAGCGACGGCCACCATGTGCGCTCTATGGTGGACGGAGCGGCCCACATCTAAAGTGGACAGCAATTATTAAAGGCATTTAAATGGAATCCGTCTCACTCAGGTCTTTAAAGACTTACTTGCACTCGAAGTTTTCGATGGGGCCGGCCTCGACATATCAGGTATTCACCACCTACCCAGATCTAGGTTACCAATCGCCTCCTGCTCCGACCACGGAAGGAGAGGAGCCGTGGTTCCGTGTCGTATTTGTTCTCGTTACAGCACTCGTGGTGATAGGTATTATTTACCTATCTTATCGGTGGTTCATCAGAGATGTCATCATTCTACTTAGGGCGAAACGACAGCGGAGCACGGAAGAGATTGGTTTCGGCAATACTCCAGTTAGGGCCGACCGTGGACGTAGCGGCGCTACCGAACCGGGAACTGGTCCAACGGCTCTTGGACATCTTGTCTAAGGGGATACGTCTTGTTGAACAATTCGTCGACGTTGATGACGACGACGACGGGGAAGAGGAAGAGATCCAGTCGGGCGGACGAGGTGGCCTGGAACAAGAGATCCAGGTCGACCGCTTCGAGAAGCTTGAAATTGAATCTGAACCGGAGGGTAAGAGTACGACCAAGTCTTCAGATCCAGACTCTCGTTGCGACGGGGGCTTCGGAGATAGGCGTCCGAAAAGGAGGTACGATATCACTACTCGGCAGTTACAGCCGAGGTTCTGACGAGAGTCAGAGGCATACCAGTGAGACTATGACGTACAAGGTCGCTATGAATTACTATATATATGTGCCTGCGGAAGCATGCAAGTATTCGAACAAGGGGCTTTGCTGTATATGGTTGATATACGATGCGCAGCCGAACGGAGCTCAGCCGGCCATCAAGGACATCTTTGCACCGGAGAGCACTCTGGTGGACTGGCCGCATACTTGGGCGGTCTCAAGGGAGGTGTGTCATCGATTCGTTATTAAACGTCGGTACACGTTTACCCTCGAGACCAACGGTAGGATTGGCAGTGATGTTGTGCCTGCGAATACGGCGTGGTATCCATGTAATAAGTCGATTAATTTCACGAAGTTTGCGAAGGGACTCGGTGTTAAAACTGAGTGGAAGAACGACGCAAACGGTGATGTTGGAAGTATAAAGAAGGGTGCTCTGTACATCGCGTTTGCGAGTGGTAACGGGGTTATCTTCAATGTAATGGGAAGGACCCGTTTGTACTTCAAATCTGTTGGAAATCAATAAAGCCTTTATTTTATTTATGATGTTGTACATCATGGTGGTGCCGTAGGCACGATACATAGACCTCGGTTGTCGAGGAAATTACACACAATACAGGGCGGCGGGGAAAAAACGGTGGCGGCTAAGGGCGTTGCAGGGGGCATGACATCGAAAAAAAACACACTATATGAATTACATAACTCCCTAAGAGGGAGTGTAGAACTTCTCATGAAGTTCCATCTGATACACAACGCAGTTGTCGTAGAAGTAGTCCAGCTGCGCTGGAGTCATCACCTTCAACCAATCTTCGTCGTAATTGACTAGAATGATGGAAGGGATACCTCCCTTTATTTGTGTCTTCCTTGCGTACTTCGGGTTGACGGTGTAGTCCTTCTGGCCACCTACTAGCTGCTTCCAACACGGACAGAACTTGAACGGTATATCGTCGAGGACGTTGTAACGTGCCTCGTTGTTGTACCGTAGGAAGTCTATTGTAAATTGCCAGTAGTTGTGTCTAAGAGGCTCGATGCTGCGAGCCCAAGTTGTCTTTCCTGTTCGTGTTGGGCCGACGATATATAGGCTCCTGGGTCGATGCTGCCTTGCGCTAGCATCTCCCTGGTGGTGTCATGCATCCATTTAAGAGTTTCAGCAGCTTGCTCGATGTTAGGACAGTCAGAATGTTCAAGCATGTATATCATAGGGTGTACCTGGAAAAGGTTTTCGGACTGCCATTCCTCAATCCTCTCGTGACACATGAGATCAGGTGGTGATGGTATCGAAGGTGGTATGAAGGGTGATGCAGCTGTTGGAAACAACCTTTCGGCTGAGTATTCAAAGTGATGCAGTTTGGTGGCCCACTCGAATGGAAATGCAGTTTGGATAGCAGAGAGGTATTCACTCTTCGTGGTAGAAGAGTTCATGATCTCTTTCATGCGTTGATCTCGGGTTGCAGGACGGGTATTCCCAGCGCTGGACCCTGGGTCCATTCCTCCACGAGGAATGAATGTACCTCTCTCGAAAGTGGAAATCGGATTCTTGAGGATATAGTCTCGAGTTCTGTTTGAACTGCGAGCAGCTTTGATGTTAGGATGATACATCTGCATGTCAAAAAACAGAGGATCCCTAGTTGTAATAGGACGAATGCTCTGTAAAAGAGCGTGAAGGTGAGGGGTCCCATCTTGGTGAAGCTCAGCAGAAACACAAATGTAAGCAGGAGTCCATGGGCGTGCGAGATCCCAGAGATGTTCACCTGCCTCCTGGGGGGTGAGGTTGCAGCGTGAATAGGTGAGGAAAACATTCGCGCACTTGAAGGCGAACCTTCGGAGCGGCTGGGTTGGGTCGACGGTGGTACTTGGTTGGAAGACCACGTCTTCCGTGGTTGGCTGCTGGGTGGTGGGTGGTGTAGCCACGGTAATGCTTTCCGCACTCATGCTCTGGGACTTAGTCGCACACGGAACTGAGTGCGGGGAGTCTAACCAGACTCCCAAACTATATTGCTAGAGCGATTTTGCTTCTCCCTCTTCGTTGAGGACCTCTCGTTATATAATAACAAGCTGGGCCTTAAAGGAGGTTTCCTGGGCCAGGCCAAAATCGCGAAAATAACATT
Gene Information
|
NCBI Accession
|
YP_010087226.1
|
|
Location
|
158-475 |
|
Protein Name
|
movement protein |
|
Coding Region
|
ATGGGGCCGGCCTCGACATATCAGGTATTCACCACCTACCCAGATCTAGGTTACCAATCGCCTCCTGCTCCGACCACGGAAGGAGAGGAGCCGTGGTTCCGTGTCGTATTTGTTCTCGTTACAGCACTCGTGGTGATAGGTATTATTTACCTATCTTATCGGTGGTTCATCAGAGATGTCATCATTCTACTTAGGGCGAAACGACAGCGGAGCACGGAAGAGATTGGTTTCGGCAATACTCCAGTTAGGGCCGACCGTGGACGTAGCGGCGCTACCGAACCGGGAACTGGTCCAACGGCTCTTGGACATCTTGTCTAA |
|
Protein Sequence
|
MGPASTYQVFTTYPDLGYQSPPAPTTEGEEPWFRVVFVLVTALVVIGIIYLSYRWFIRDVIILLRAKRQRSTEEIGFGNTPVRADRGRSGATEPGTGPTALGHLV |
|
NCBI Accession
|
YP_010087227.1
|
|
Location
|
511-1260 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGACGACGACGACGGGGAAGAGGAAGAGATCCAGTCGGGCGGACGAGGTGGCCTGGAACAAGAGATCCAGGTCGACCGCTTCGAGAAGCTTGAAATTGAATCTGAACCGGAGGGTAAGAGTACGACCAAGTCTTCAGATCCAGACTCTCGTTGCGACGGGGGCTTCGGAGATAGGCGTCCGAAAAGGAGGTACGATATCACTACTCGGCAGTTACAGCCGAGGTTCTGACGAGAGTCAGAGGCATACCAGTGAGACTATGACGTACAAGGTCGCTATGAATTACTATATATATGTGCCTGCGGAAGCATGCAAGTATTCGAACAAGGGGCTTTGCTGTATATGGTTGATATACGATGCGCAGCCGAACGGAGCTCAGCCGGCCATCAAGGACATCTTTGCACCGGAGAGCACTCTGGTGGACTGGCCGCATACTTGGGCGGTCTCAAGGGAGGTGTGTCATCGATTCGTTATTAAACGTCGGTACACGTTTACCCTCGAGACCAACGGTAGGATTGGCAGTGATGTTGTGCCTGCGAATACGGCGTGGTATCCATGTAATAAGTCGATTAATTTCACGAAGTTTGCGAAGGGACTCGGTGTTAAAACTGAGTGGAAGAACGACGCAAACGGTGATGTTGGAAGTATAAAGAAGGGTGCTCTGTACATCGCGTTTGCGAGTGGTAACGGGGTTATCTTCAATGTAATGGGAAGGACCCGTTTGTACTTCAAATCTGTTGGAAATCAATAA |
|
Protein Sequence
|
MTTTTGKRKRSSRADEVAWNKRSRSTASRSLKLNLNRRVRVRPSLQIQTLVATGASEIGVRKGGTISLLGSYSRGSDESQRHTSETMTYKVAMNYYIYVPAEACKYSNKGLCCIWLIYDAQPNGAQPAIKDIFAPESTLVDWPHTWAVSREVCHRFVIKRRYTFTLETNGRIGSDVVPANTAWYPCNKSINFTKFAKGLGVKTEWKNDANGDVGSIKKGALYIAFASGNGVIFNVMGRTRLYFKSVGNQ |
|
NCBI Accession
|
YP_010087228.1
|
|
Location
|
1441-1851,1944-2666 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGAGTGCGGAAAGCATTACCGTGGCTACACCACCCACCACCCAGCAGCCAACCACGGAAGACGTGGTCTTCCAACCAAGTACCACCGTCGACCCAACCCAGCCGCTCCGAAGGTTCGCCTTCAAGTGCGCGAATGTTTTCCTCACCTATTCACGCTGCAACCTCACCCCCCAGGAGGCAGGTGAACATCTCTGGGATCTCGCACGCCCATGGACTCCTGCTTACATTTGTGTTTCTGCTGAGCTTCACCAAGATGGGACCCCTCACCTTCACGCTCTTTTACAGAGCATTCGTCCTATTACAACTAGGGATCCTCTGTTTTTTGACATGCAGATGTATCATCCTAACATCAAAGCTGCTCGCAGTTCAAACAGAACTCGAGACTATATCCTCAAGAATCCGATTTCCACTTTCGAGAGAGGTACATTCATTCCTCGTGGAGGAATGGACCCAGGGTCCAGCGCTGGGAATACCCGTCCTGCAACCCGAGATCAACGCATGAAAGAGATCATGAACTCTTCTACCACGAAGAGTGAATACCTCTCTGCTATCCAAACTGCATTTCCATTCGAGTGGGCCACCAAACTGCATCACTTTGAATACTCAGCCGAAAGGTTGTTTCCAACAGCTGCATCACCCTTCATACCACCTTCGATACCATCACCACCTGATCTCATGTGTCACGAGAGGATTGAGGAATGGCAGTCCGAAAACCTTTTCCAGGGAGATGCTAGCGCAAGGCAGCATCGACCCAGGAGCCTATATATCGTCGGCCCAACACGAACAGGAAAGACAACTTGGGCTCGCAGCATCGAGCCTCTTAGACACAACTACTGGCAATTTACAATAGACTTCCTACGGTACAACAACGAGGCACGTTACAACGTCCTCGACGATATACCGTTCAAGTTCTGTCCGTGTTGGAAGCAGCTAGTAGGTGGCCAGAAGGACTACACCGTCAACCCGAAGTACGCAAGGAAGACACAAATAAAGGGAGGTATCCCTTCCATCATTCTAGTCAATTACGACGAAGATTGGTTGAAGGTGATGACTCCAGCGCAGCTGGACTACTTCTACGACAACTGCGTTGTGTATCAGATGGAACTTCATGAGAAGTTCTACACTCCCTCTTAG |
|
Protein Sequence
|
MSAESITVATPPTTQQPTTEDVVFQPSTTVDPTQPLRRFAFKCANVFLTYSRCNLTPQEAGEHLWDLARPWTPAYICVSAELHQDGTPHLHALLQSIRPITTRDPLFFDMQMYHPNIKAARSSNRTRDYILKNPISTFERGTFIPRGGMDPGSSAGNTRPATRDQRMKEIMNSSTTKSEYLSAIQTAFPFEWATKLHHFEYSAERLFPTAASPFIPPSIPSPPDLMCHERIEEWQSENLFQGDASARQHRPRSLYIVGPTRTGKTTWARSIEPLRHNYWQFTIDFLRYNNEARYNVLDDIPFKFCPCWKQLVGGQKDYTVNPKYARKTQIKGGIPSIILVNYDEDWLKVMTPAQLDYFYDNCVVYQMELHEKFYTPS |
|
NCBI Accession
|
YP_010087229.1
|
|
Location
|
1725-2666 |
|
Protein Name
|
RepA |
|
Coding Region
|
ATGAGTGCGGAAAGCATTACCGTGGCTACACCACCCACCACCCAGCAGCCAACCACGGAAGACGTGGTCTTCCAACCAAGTACCACCGTCGACCCAACCCAGCCGCTCCGAAGGTTCGCCTTCAAGTGCGCGAATGTTTTCCTCACCTATTCACGCTGCAACCTCACCCCCCAGGAGGCAGGTGAACATCTCTGGGATCTCGCACGCCCATGGACTCCTGCTTACATTTGTGTTTCTGCTGAGCTTCACCAAGATGGGACCCCTCACCTTCACGCTCTTTTACAGAGCATTCGTCCTATTACAACTAGGGATCCTCTGTTTTTTGACATGCAGATGTATCATCCTAACATCAAAGCTGCTCGCAGTTCAAACAGAACTCGAGACTATATCCTCAAGAATCCGATTTCCACTTTCGAGAGAGGTACATTCATTCCTCGTGGAGGAATGGACCCAGGGTCCAGCGCTGGGAATACCCGTCCTGCAACCCGAGATCAACGCATGAAAGAGATCATGAACTCTTCTACCACGAAGAGTGAATACCTCTCTGCTATCCAAACTGCATTTCCATTCGAGTGGGCCACCAAACTGCATCACTTTGAATACTCAGCCGAAAGGTTGTTTCCAACAGCTGCATCACCCTTCATACCACCTTCGATACCATCACCACCTGATCTCATGTGTCACGAGAGGATTGAGGAATGGCAGTCCGAAAACCTTTTCCAGGTACACCCTATGATATACATGCTTGAACATTCTGACTGTCCTAACATCGAGCAAGCTGCTGAAACTCTTAAATGGATGCATGACACCACCAGGGAGATGCTAGCGCAAGGCAGCATCGACCCAGGAGCCTATATATCGTCGGCCCAACACGAACAGGAAAGACAACTTGGGCTCGCAGCATCGAGCCTCTTAGACACAACTACTGGCAATTTACAATAG |
|
Protein Sequence
|
MSAESITVATPPTTQQPTTEDVVFQPSTTVDPTQPLRRFAFKCANVFLTYSRCNLTPQEAGEHLWDLARPWTPAYICVSAELHQDGTPHLHALLQSIRPITTRDPLFFDMQMYHPNIKAARSSNRTRDYILKNPISTFERGTFIPRGGMDPGSSAGNTRPATRDQRMKEIMNSSTTKSEYLSAIQTAFPFEWATKLHHFEYSAERLFPTAASPFIPPSIPSPPDLMCHERIEEWQSENLFQVHPMIYMLEHSDCPNIEQAAETLKWMHDTTREMLAQGSIDPGAYISSAQHEQERQLGLAASSLLDTTTGNLQ |