Maize streak dwarfing virus

Basic Information

Genus Mastrevirus
NCBI Assembly GCF_013088405.1
Isolate Ethiopia: Adama Zuria
Release date 2021/6/1
Submitter Guadie,D., Tesfaye,K., Knierim,D., Winter,S., Abraham,A.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_055519
GCAGCGATTTTGGGGCCCAGGAAAGCGACGGCCACCATGTGCGCTCTATGGTGGACGGAGCGGCCCACATCTAAAGTGGACAGCAATTATTAAAGGCATTTAAATGGAATCCGTCTCACTCAGGTCTTTAAAGACTTACTTGCACTCGAAGTTTTCGATGGGGCCGGCCTCGACATATCAGGTATTCACCACCTACCCAGATCTAGGTTACCAATCGCCTCCTGCTCCGACCACGGAAGGAGAGGAGCCGTGGTTCCGTGTCGTATTTGTTCTCGTTACAGCACTCGTGGTGATAGGTATTATTTACCTATCTTATCGGTGGTTCATCAGAGATGTCATCATTCTACTTAGGGCGAAACGACAGCGGAGCACGGAAGAGATTGGTTTCGGCAATACTCCAGTTAGGGCCGACCGTGGACGTAGCGGCGCTACCGAACCGGGAACTGGTCCAACGGCTCTTGGACATCTTGTCTAAGGGGATACGTCTTGTTGAACAATTCGTCGACGTTGATGACGACGACGACGGGGAAGAGGAAGAGATCCAGTCGGGCGGACGAGGTGGCCTGGAACAAGAGATCCAGGTCGACCGCTTCGAGAAGCTTGAAATTGAATCTGAACCGGAGGGTAAGAGTACGACCAAGTCTTCAGATCCAGACTCTCGTTGCGACGGGGGCTTCGGAGATAGGCGTCCGAAAAGGAGGTACGATATCACTACTCGGCAGTTACAGCCGAGGTTCTGACGAGAGTCAGAGGCATACCAGTGAGACTATGACGTACAAGGTCGCTATGAATTACTATATATATGTGCCTGCGGAAGCATGCAAGTATTCGAACAAGGGGCTTTGCTGTATATGGTTGATATACGATGCGCAGCCGAACGGAGCTCAGCCGGCCATCAAGGACATCTTTGCACCGGAGAGCACTCTGGTGGACTGGCCGCATACTTGGGCGGTCTCAAGGGAGGTGTGTCATCGATTCGTTATTAAACGTCGGTACACGTTTACCCTCGAGACCAACGGTAGGATTGGCAGTGATGTTGTGCCTGCGAATACGGCGTGGTATCCATGTAATAAGTCGATTAATTTCACGAAGTTTGCGAAGGGACTCGGTGTTAAAACTGAGTGGAAGAACGACGCAAACGGTGATGTTGGAAGTATAAAGAAGGGTGCTCTGTACATCGCGTTTGCGAGTGGTAACGGGGTTATCTTCAATGTAATGGGAAGGACCCGTTTGTACTTCAAATCTGTTGGAAATCAATAAAGCCTTTATTTTATTTATGATGTTGTACATCATGGTGGTGCCGTAGGCACGATACATAGACCTCGGTTGTCGAGGAAATTACACACAATACAGGGCGGCGGGGAAAAAACGGTGGCGGCTAAGGGCGTTGCAGGGGGCATGACATCGAAAAAAAACACACTATATGAATTACATAACTCCCTAAGAGGGAGTGTAGAACTTCTCATGAAGTTCCATCTGATACACAACGCAGTTGTCGTAGAAGTAGTCCAGCTGCGCTGGAGTCATCACCTTCAACCAATCTTCGTCGTAATTGACTAGAATGATGGAAGGGATACCTCCCTTTATTTGTGTCTTCCTTGCGTACTTCGGGTTGACGGTGTAGTCCTTCTGGCCACCTACTAGCTGCTTCCAACACGGACAGAACTTGAACGGTATATCGTCGAGGACGTTGTAACGTGCCTCGTTGTTGTACCGTAGGAAGTCTATTGTAAATTGCCAGTAGTTGTGTCTAAGAGGCTCGATGCTGCGAGCCCAAGTTGTCTTTCCTGTTCGTGTTGGGCCGACGATATATAGGCTCCTGGGTCGATGCTGCCTTGCGCTAGCATCTCCCTGGTGGTGTCATGCATCCATTTAAGAGTTTCAGCAGCTTGCTCGATGTTAGGACAGTCAGAATGTTCAAGCATGTATATCATAGGGTGTACCTGGAAAAGGTTTTCGGACTGCCATTCCTCAATCCTCTCGTGACACATGAGATCAGGTGGTGATGGTATCGAAGGTGGTATGAAGGGTGATGCAGCTGTTGGAAACAACCTTTCGGCTGAGTATTCAAAGTGATGCAGTTTGGTGGCCCACTCGAATGGAAATGCAGTTTGGATAGCAGAGAGGTATTCACTCTTCGTGGTAGAAGAGTTCATGATCTCTTTCATGCGTTGATCTCGGGTTGCAGGACGGGTATTCCCAGCGCTGGACCCTGGGTCCATTCCTCCACGAGGAATGAATGTACCTCTCTCGAAAGTGGAAATCGGATTCTTGAGGATATAGTCTCGAGTTCTGTTTGAACTGCGAGCAGCTTTGATGTTAGGATGATACATCTGCATGTCAAAAAACAGAGGATCCCTAGTTGTAATAGGACGAATGCTCTGTAAAAGAGCGTGAAGGTGAGGGGTCCCATCTTGGTGAAGCTCAGCAGAAACACAAATGTAAGCAGGAGTCCATGGGCGTGCGAGATCCCAGAGATGTTCACCTGCCTCCTGGGGGGTGAGGTTGCAGCGTGAATAGGTGAGGAAAACATTCGCGCACTTGAAGGCGAACCTTCGGAGCGGCTGGGTTGGGTCGACGGTGGTACTTGGTTGGAAGACCACGTCTTCCGTGGTTGGCTGCTGGGTGGTGGGTGGTGTAGCCACGGTAATGCTTTCCGCACTCATGCTCTGGGACTTAGTCGCACACGGAACTGAGTGCGGGGAGTCTAACCAGACTCCCAAACTATATTGCTAGAGCGATTTTGCTTCTCCCTCTTCGTTGAGGACCTCTCGTTATATAATAACAAGCTGGGCCTTAAAGGAGGTTTCCTGGGCCAGGCCAAAATCGCGAAAATAACATT

Gene Information

NCBI Accession YP_010087226.1
Location 158-475
Protein Name movement protein
Coding Region ATGGGGCCGGCCTCGACATATCAGGTATTCACCACCTACCCAGATCTAGGTTACCAATCGCCTCCTGCTCCGACCACGGAAGGAGAGGAGCCGTGGTTCCGTGTCGTATTTGTTCTCGTTACAGCACTCGTGGTGATAGGTATTATTTACCTATCTTATCGGTGGTTCATCAGAGATGTCATCATTCTACTTAGGGCGAAACGACAGCGGAGCACGGAAGAGATTGGTTTCGGCAATACTCCAGTTAGGGCCGACCGTGGACGTAGCGGCGCTACCGAACCGGGAACTGGTCCAACGGCTCTTGGACATCTTGTCTAA
Protein Sequence MGPASTYQVFTTYPDLGYQSPPAPTTEGEEPWFRVVFVLVTALVVIGIIYLSYRWFIRDVIILLRAKRQRSTEEIGFGNTPVRADRGRSGATEPGTGPTALGHLV

NCBI Accession YP_010087227.1
Location 511-1260
Protein Name coat protein
Coding Region ATGACGACGACGACGGGGAAGAGGAAGAGATCCAGTCGGGCGGACGAGGTGGCCTGGAACAAGAGATCCAGGTCGACCGCTTCGAGAAGCTTGAAATTGAATCTGAACCGGAGGGTAAGAGTACGACCAAGTCTTCAGATCCAGACTCTCGTTGCGACGGGGGCTTCGGAGATAGGCGTCCGAAAAGGAGGTACGATATCACTACTCGGCAGTTACAGCCGAGGTTCTGACGAGAGTCAGAGGCATACCAGTGAGACTATGACGTACAAGGTCGCTATGAATTACTATATATATGTGCCTGCGGAAGCATGCAAGTATTCGAACAAGGGGCTTTGCTGTATATGGTTGATATACGATGCGCAGCCGAACGGAGCTCAGCCGGCCATCAAGGACATCTTTGCACCGGAGAGCACTCTGGTGGACTGGCCGCATACTTGGGCGGTCTCAAGGGAGGTGTGTCATCGATTCGTTATTAAACGTCGGTACACGTTTACCCTCGAGACCAACGGTAGGATTGGCAGTGATGTTGTGCCTGCGAATACGGCGTGGTATCCATGTAATAAGTCGATTAATTTCACGAAGTTTGCGAAGGGACTCGGTGTTAAAACTGAGTGGAAGAACGACGCAAACGGTGATGTTGGAAGTATAAAGAAGGGTGCTCTGTACATCGCGTTTGCGAGTGGTAACGGGGTTATCTTCAATGTAATGGGAAGGACCCGTTTGTACTTCAAATCTGTTGGAAATCAATAA
Protein Sequence MTTTTGKRKRSSRADEVAWNKRSRSTASRSLKLNLNRRVRVRPSLQIQTLVATGASEIGVRKGGTISLLGSYSRGSDESQRHTSETMTYKVAMNYYIYVPAEACKYSNKGLCCIWLIYDAQPNGAQPAIKDIFAPESTLVDWPHTWAVSREVCHRFVIKRRYTFTLETNGRIGSDVVPANTAWYPCNKSINFTKFAKGLGVKTEWKNDANGDVGSIKKGALYIAFASGNGVIFNVMGRTRLYFKSVGNQ

NCBI Accession YP_010087228.1
Location 1441-1851,1944-2666
Protein Name replication-associated protein
Coding Region ATGAGTGCGGAAAGCATTACCGTGGCTACACCACCCACCACCCAGCAGCCAACCACGGAAGACGTGGTCTTCCAACCAAGTACCACCGTCGACCCAACCCAGCCGCTCCGAAGGTTCGCCTTCAAGTGCGCGAATGTTTTCCTCACCTATTCACGCTGCAACCTCACCCCCCAGGAGGCAGGTGAACATCTCTGGGATCTCGCACGCCCATGGACTCCTGCTTACATTTGTGTTTCTGCTGAGCTTCACCAAGATGGGACCCCTCACCTTCACGCTCTTTTACAGAGCATTCGTCCTATTACAACTAGGGATCCTCTGTTTTTTGACATGCAGATGTATCATCCTAACATCAAAGCTGCTCGCAGTTCAAACAGAACTCGAGACTATATCCTCAAGAATCCGATTTCCACTTTCGAGAGAGGTACATTCATTCCTCGTGGAGGAATGGACCCAGGGTCCAGCGCTGGGAATACCCGTCCTGCAACCCGAGATCAACGCATGAAAGAGATCATGAACTCTTCTACCACGAAGAGTGAATACCTCTCTGCTATCCAAACTGCATTTCCATTCGAGTGGGCCACCAAACTGCATCACTTTGAATACTCAGCCGAAAGGTTGTTTCCAACAGCTGCATCACCCTTCATACCACCTTCGATACCATCACCACCTGATCTCATGTGTCACGAGAGGATTGAGGAATGGCAGTCCGAAAACCTTTTCCAGGGAGATGCTAGCGCAAGGCAGCATCGACCCAGGAGCCTATATATCGTCGGCCCAACACGAACAGGAAAGACAACTTGGGCTCGCAGCATCGAGCCTCTTAGACACAACTACTGGCAATTTACAATAGACTTCCTACGGTACAACAACGAGGCACGTTACAACGTCCTCGACGATATACCGTTCAAGTTCTGTCCGTGTTGGAAGCAGCTAGTAGGTGGCCAGAAGGACTACACCGTCAACCCGAAGTACGCAAGGAAGACACAAATAAAGGGAGGTATCCCTTCCATCATTCTAGTCAATTACGACGAAGATTGGTTGAAGGTGATGACTCCAGCGCAGCTGGACTACTTCTACGACAACTGCGTTGTGTATCAGATGGAACTTCATGAGAAGTTCTACACTCCCTCTTAG
Protein Sequence MSAESITVATPPTTQQPTTEDVVFQPSTTVDPTQPLRRFAFKCANVFLTYSRCNLTPQEAGEHLWDLARPWTPAYICVSAELHQDGTPHLHALLQSIRPITTRDPLFFDMQMYHPNIKAARSSNRTRDYILKNPISTFERGTFIPRGGMDPGSSAGNTRPATRDQRMKEIMNSSTTKSEYLSAIQTAFPFEWATKLHHFEYSAERLFPTAASPFIPPSIPSPPDLMCHERIEEWQSENLFQGDASARQHRPRSLYIVGPTRTGKTTWARSIEPLRHNYWQFTIDFLRYNNEARYNVLDDIPFKFCPCWKQLVGGQKDYTVNPKYARKTQIKGGIPSIILVNYDEDWLKVMTPAQLDYFYDNCVVYQMELHEKFYTPS

NCBI Accession YP_010087229.1
Location 1725-2666
Protein Name RepA
Coding Region ATGAGTGCGGAAAGCATTACCGTGGCTACACCACCCACCACCCAGCAGCCAACCACGGAAGACGTGGTCTTCCAACCAAGTACCACCGTCGACCCAACCCAGCCGCTCCGAAGGTTCGCCTTCAAGTGCGCGAATGTTTTCCTCACCTATTCACGCTGCAACCTCACCCCCCAGGAGGCAGGTGAACATCTCTGGGATCTCGCACGCCCATGGACTCCTGCTTACATTTGTGTTTCTGCTGAGCTTCACCAAGATGGGACCCCTCACCTTCACGCTCTTTTACAGAGCATTCGTCCTATTACAACTAGGGATCCTCTGTTTTTTGACATGCAGATGTATCATCCTAACATCAAAGCTGCTCGCAGTTCAAACAGAACTCGAGACTATATCCTCAAGAATCCGATTTCCACTTTCGAGAGAGGTACATTCATTCCTCGTGGAGGAATGGACCCAGGGTCCAGCGCTGGGAATACCCGTCCTGCAACCCGAGATCAACGCATGAAAGAGATCATGAACTCTTCTACCACGAAGAGTGAATACCTCTCTGCTATCCAAACTGCATTTCCATTCGAGTGGGCCACCAAACTGCATCACTTTGAATACTCAGCCGAAAGGTTGTTTCCAACAGCTGCATCACCCTTCATACCACCTTCGATACCATCACCACCTGATCTCATGTGTCACGAGAGGATTGAGGAATGGCAGTCCGAAAACCTTTTCCAGGTACACCCTATGATATACATGCTTGAACATTCTGACTGTCCTAACATCGAGCAAGCTGCTGAAACTCTTAAATGGATGCATGACACCACCAGGGAGATGCTAGCGCAAGGCAGCATCGACCCAGGAGCCTATATATCGTCGGCCCAACACGAACAGGAAAGACAACTTGGGCTCGCAGCATCGAGCCTCTTAGACACAACTACTGGCAATTTACAATAG
Protein Sequence MSAESITVATPPTTQQPTTEDVVFQPSTTVDPTQPLRRFAFKCANVFLTYSRCNLTPQEAGEHLWDLARPWTPAYICVSAELHQDGTPHLHALLQSIRPITTRDPLFFDMQMYHPNIKAARSSNRTRDYILKNPISTFERGTFIPRGGMDPGSSAGNTRPATRDQRMKEIMNSSTTKSEYLSAIQTAFPFEWATKLHHFEYSAERLFPTAASPFIPPSIPSPPDLMCHERIEEWQSENLFQVHPMIYMLEHSDCPNIEQAAETLKWMHDTTREMLAQGSIDPGAYISSAQHEQERQLGLAASSLLDTTTGNLQ

References More References in PubMed

1

Maize fine streak virus, a New Leafhopper-Transmitted Rhabdovirus.

Redinbaugh MG, et al.  Phytopathology. 2002 Nov;92(11):1167-74. doi: 10.1094/PHYTO.2002.92.11.1167.

PMID: 18944241
2

Maize necrotic streak virus, a New Maize Virus with Similarity to Species of the Family Tombusviridae.

Louie R, et al.  Plant Dis. 2000 Oct;84(10):1133-1139. doi: 10.1094/PDIS.2000.84.10.1133.

PMID: 30831907
3

A Review of Vector-Borne Rice Viruses.

Wang P, et al.  Viruses. 2022 Oct 14;14(10):2258. doi: 10.3390/v14102258.

PMID: 36298813
4

Maize Lethal Necrosis: An Emerging, Synergistic Viral Disease.

Redinbaugh MG, et al.  Annu Rev Virol. 2018 Sep 29;5(1):301-322. doi: 10.1146/annurev-virology-092917-043413. Epub 2018 Jul 30.

PMID: 30059641
5

Splicing features in maize streak virus virion- and complementary-sense gene expression.

Wright EA, et al.  Plant J. 1997 Dec;12(6):1285-97. doi: 10.1046/j.1365-313x.1997.12061285.x.

PMID: 9450342
6

Global Plant Virus Disease Pandemics and Epidemics.

Jones RAC.  Plants (Basel). 2021 Jan 25;10(2):233. doi: 10.3390/plants10020233.

PMID: 33504044
7

Maize lipid droplet-associated protein 2 is recruited by a virus to enhance viral multiplication and infection through regulating cellular fatty acid metabolism.

Wang S, et al.  Plant J. 2024 Sep;119(5):2484-2499. doi: 10.1111/tpj.16934. Epub 2024 Jul 15.

PMID: 39007841
8

Identification of the Coexisting Virus-Derived siRNA in Maize and Rice Infected by Rice Black-Streaked Dwarf Virus.

Wang F, et al.  Plant Dis. 2024 Sep;108(9):2845-2854. doi: 10.1094/PDIS-11-23-2301-RE. Epub 2024 Sep 4.

PMID: 38736149
9

Transcriptome of the Maize Leafhopper (Dalbulus maidis) and Its Transcriptional Response to Maize Rayado Fino Virus (MRFV), Which It Transmits in a Persistent, Propagative Manner.

Xu J, et al.  Microbiol Spectr. 2021 Dec 22;9(3):e0061221. doi: 10.1128/Spectrum.00612-21. Epub 2021 Nov 24.

PMID: 34817206
10

Computer analysis between nucleotide and amino acid sequences of bean golden mosaic virus and those of maize streak, wheat dwarf, chloris striate mosaic, and beet curly top viruses.

Ikegami M.  Microbiol Immunol. 1989;33(10):863-9. doi: 10.1111/j.1348-0421.1989.tb00972.x.

PMID: 2615677