Maize streak dwarfing virus


Basic Information

Genus Mastrevirus
NCBI Assembly GCF_013088405.1
Isolate Ethiopia: Adama Zuria
Release date 2021/6/1
Submitter Guadie,D., Tesfaye,K., Knierim,D., Winter,S., Abraham,A.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_055519
GCAGCGATTTTGGGGCCCAGGAAAGCGACGGCCACCATGTGCGCTCTATGGTGGACGGAGCGGCCCACATCTAAAGTGGACAGCAATTATTAAAGGCATTTAAATGGAATCCGTCTCACTCAGGTCTTTAAAGACTTACTTGCACTCGAAGTTTTCGATGGGGCCGGCCTCGACATATCAGGTATTCACCACCTACCCAGATCTAGGTTACCAATCGCCTCCTGCTCCGACCACGGAAGGAGAGGAGCCGTGGTTCCGTGTCGTATTTGTTCTCGTTACAGCACTCGTGGTGATAGGTATTATTTACCTATCTTATCGGTGGTTCATCAGAGATGTCATCATTCTACTTAGGGCGAAACGACAGCGGAGCACGGAAGAGATTGGTTTCGGCAATACTCCAGTTAGGGCCGACCGTGGACGTAGCGGCGCTACCGAACCGGGAACTGGTCCAACGGCTCTTGGACATCTTGTCTAAGGGGATACGTCTTGTTGAACAATTCGTCGACGTTGATGACGACGACGACGGGGAAGAGGAAGAGATCCAGTCGGGCGGACGAGGTGGCCTGGAACAAGAGATCCAGGTCGACCGCTTCGAGAAGCTTGAAATTGAATCTGAACCGGAGGGTAAGAGTACGACCAAGTCTTCAGATCCAGACTCTCGTTGCGACGGGGGCTTCGGAGATAGGCGTCCGAAAAGGAGGTACGATATCACTACTCGGCAGTTACAGCCGAGGTTCTGACGAGAGTCAGAGGCATACCAGTGAGACTATGACGTACAAGGTCGCTATGAATTACTATATATATGTGCCTGCGGAAGCATGCAAGTATTCGAACAAGGGGCTTTGCTGTATATGGTTGATATACGATGCGCAGCCGAACGGAGCTCAGCCGGCCATCAAGGACATCTTTGCACCGGAGAGCACTCTGGTGGACTGGCCGCATACTTGGGCGGTCTCAAGGGAGGTGTGTCATCGATTCGTTATTAAACGTCGGTACACGTTTACCCTCGAGACCAACGGTAGGATTGGCAGTGATGTTGTGCCTGCGAATACGGCGTGGTATCCATGTAATAAGTCGATTAATTTCACGAAGTTTGCGAAGGGACTCGGTGTTAAAACTGAGTGGAAGAACGACGCAAACGGTGATGTTGGAAGTATAAAGAAGGGTGCTCTGTACATCGCGTTTGCGAGTGGTAACGGGGTTATCTTCAATGTAATGGGAAGGACCCGTTTGTACTTCAAATCTGTTGGAAATCAATAAAGCCTTTATTTTATTTATGATGTTGTACATCATGGTGGTGCCGTAGGCACGATACATAGACCTCGGTTGTCGAGGAAATTACACACAATACAGGGCGGCGGGGAAAAAACGGTGGCGGCTAAGGGCGTTGCAGGGGGCATGACATCGAAAAAAAACACACTATATGAATTACATAACTCCCTAAGAGGGAGTGTAGAACTTCTCATGAAGTTCCATCTGATACACAACGCAGTTGTCGTAGAAGTAGTCCAGCTGCGCTGGAGTCATCACCTTCAACCAATCTTCGTCGTAATTGACTAGAATGATGGAAGGGATACCTCCCTTTATTTGTGTCTTCCTTGCGTACTTCGGGTTGACGGTGTAGTCCTTCTGGCCACCTACTAGCTGCTTCCAACACGGACAGAACTTGAACGGTATATCGTCGAGGACGTTGTAACGTGCCTCGTTGTTGTACCGTAGGAAGTCTATTGTAAATTGCCAGTAGTTGTGTCTAAGAGGCTCGATGCTGCGAGCCCAAGTTGTCTTTCCTGTTCGTGTTGGGCCGACGATATATAGGCTCCTGGGTCGATGCTGCCTTGCGCTAGCATCTCCCTGGTGGTGTCATGCATCCATTTAAGAGTTTCAGCAGCTTGCTCGATGTTAGGACAGTCAGAATGTTCAAGCATGTATATCATAGGGTGTACCTGGAAAAGGTTTTCGGACTGCCATTCCTCAATCCTCTCGTGACACATGAGATCAGGTGGTGATGGTATCGAAGGTGGTATGAAGGGTGATGCAGCTGTTGGAAACAACCTTTCGGCTGAGTATTCAAAGTGATGCAGTTTGGTGGCCCACTCGAATGGAAATGCAGTTTGGATAGCAGAGAGGTATTCACTCTTCGTGGTAGAAGAGTTCATGATCTCTTTCATGCGTTGATCTCGGGTTGCAGGACGGGTATTCCCAGCGCTGGACCCTGGGTCCATTCCTCCACGAGGAATGAATGTACCTCTCTCGAAAGTGGAAATCGGATTCTTGAGGATATAGTCTCGAGTTCTGTTTGAACTGCGAGCAGCTTTGATGTTAGGATGATACATCTGCATGTCAAAAAACAGAGGATCCCTAGTTGTAATAGGACGAATGCTCTGTAAAAGAGCGTGAAGGTGAGGGGTCCCATCTTGGTGAAGCTCAGCAGAAACACAAATGTAAGCAGGAGTCCATGGGCGTGCGAGATCCCAGAGATGTTCACCTGCCTCCTGGGGGGTGAGGTTGCAGCGTGAATAGGTGAGGAAAACATTCGCGCACTTGAAGGCGAACCTTCGGAGCGGCTGGGTTGGGTCGACGGTGGTACTTGGTTGGAAGACCACGTCTTCCGTGGTTGGCTGCTGGGTGGTGGGTGGTGTAGCCACGGTAATGCTTTCCGCACTCATGCTCTGGGACTTAGTCGCACACGGAACTGAGTGCGGGGAGTCTAACCAGACTCCCAAACTATATTGCTAGAGCGATTTTGCTTCTCCCTCTTCGTTGAGGACCTCTCGTTATATAATAACAAGCTGGGCCTTAAAGGAGGTTTCCTGGGCCAGGCCAAAATCGCGAAAATAACATT

Gene Information

NCBI Accession YP_010087226.1
Location 158-475
Protein Name movement protein
Coding Region ATGGGGCCGGCCTCGACATATCAGGTATTCACCACCTACCCAGATCTAGGTTACCAATCGCCTCCTGCTCCGACCACGGAAGGAGAGGAGCCGTGGTTCCGTGTCGTATTTGTTCTCGTTACAGCACTCGTGGTGATAGGTATTATTTACCTATCTTATCGGTGGTTCATCAGAGATGTCATCATTCTACTTAGGGCGAAACGACAGCGGAGCACGGAAGAGATTGGTTTCGGCAATACTCCAGTTAGGGCCGACCGTGGACGTAGCGGCGCTACCGAACCGGGAACTGGTCCAACGGCTCTTGGACATCTTGTCTAA
Protein Sequence MGPASTYQVFTTYPDLGYQSPPAPTTEGEEPWFRVVFVLVTALVVIGIIYLSYRWFIRDVIILLRAKRQRSTEEIGFGNTPVRADRGRSGATEPGTGPTALGHLV

NCBI Accession YP_010087227.1
Location 511-1260
Protein Name coat protein
Coding Region ATGACGACGACGACGGGGAAGAGGAAGAGATCCAGTCGGGCGGACGAGGTGGCCTGGAACAAGAGATCCAGGTCGACCGCTTCGAGAAGCTTGAAATTGAATCTGAACCGGAGGGTAAGAGTACGACCAAGTCTTCAGATCCAGACTCTCGTTGCGACGGGGGCTTCGGAGATAGGCGTCCGAAAAGGAGGTACGATATCACTACTCGGCAGTTACAGCCGAGGTTCTGACGAGAGTCAGAGGCATACCAGTGAGACTATGACGTACAAGGTCGCTATGAATTACTATATATATGTGCCTGCGGAAGCATGCAAGTATTCGAACAAGGGGCTTTGCTGTATATGGTTGATATACGATGCGCAGCCGAACGGAGCTCAGCCGGCCATCAAGGACATCTTTGCACCGGAGAGCACTCTGGTGGACTGGCCGCATACTTGGGCGGTCTCAAGGGAGGTGTGTCATCGATTCGTTATTAAACGTCGGTACACGTTTACCCTCGAGACCAACGGTAGGATTGGCAGTGATGTTGTGCCTGCGAATACGGCGTGGTATCCATGTAATAAGTCGATTAATTTCACGAAGTTTGCGAAGGGACTCGGTGTTAAAACTGAGTGGAAGAACGACGCAAACGGTGATGTTGGAAGTATAAAGAAGGGTGCTCTGTACATCGCGTTTGCGAGTGGTAACGGGGTTATCTTCAATGTAATGGGAAGGACCCGTTTGTACTTCAAATCTGTTGGAAATCAATAA
Protein Sequence MTTTTGKRKRSSRADEVAWNKRSRSTASRSLKLNLNRRVRVRPSLQIQTLVATGASEIGVRKGGTISLLGSYSRGSDESQRHTSETMTYKVAMNYYIYVPAEACKYSNKGLCCIWLIYDAQPNGAQPAIKDIFAPESTLVDWPHTWAVSREVCHRFVIKRRYTFTLETNGRIGSDVVPANTAWYPCNKSINFTKFAKGLGVKTEWKNDANGDVGSIKKGALYIAFASGNGVIFNVMGRTRLYFKSVGNQ

NCBI Accession YP_010087228.1
Location 1441-1851,1944-2666
Protein Name replication-associated protein
Coding Region ATGAGTGCGGAAAGCATTACCGTGGCTACACCACCCACCACCCAGCAGCCAACCACGGAAGACGTGGTCTTCCAACCAAGTACCACCGTCGACCCAACCCAGCCGCTCCGAAGGTTCGCCTTCAAGTGCGCGAATGTTTTCCTCACCTATTCACGCTGCAACCTCACCCCCCAGGAGGCAGGTGAACATCTCTGGGATCTCGCACGCCCATGGACTCCTGCTTACATTTGTGTTTCTGCTGAGCTTCACCAAGATGGGACCCCTCACCTTCACGCTCTTTTACAGAGCATTCGTCCTATTACAACTAGGGATCCTCTGTTTTTTGACATGCAGATGTATCATCCTAACATCAAAGCTGCTCGCAGTTCAAACAGAACTCGAGACTATATCCTCAAGAATCCGATTTCCACTTTCGAGAGAGGTACATTCATTCCTCGTGGAGGAATGGACCCAGGGTCCAGCGCTGGGAATACCCGTCCTGCAACCCGAGATCAACGCATGAAAGAGATCATGAACTCTTCTACCACGAAGAGTGAATACCTCTCTGCTATCCAAACTGCATTTCCATTCGAGTGGGCCACCAAACTGCATCACTTTGAATACTCAGCCGAAAGGTTGTTTCCAACAGCTGCATCACCCTTCATACCACCTTCGATACCATCACCACCTGATCTCATGTGTCACGAGAGGATTGAGGAATGGCAGTCCGAAAACCTTTTCCAGGGAGATGCTAGCGCAAGGCAGCATCGACCCAGGAGCCTATATATCGTCGGCCCAACACGAACAGGAAAGACAACTTGGGCTCGCAGCATCGAGCCTCTTAGACACAACTACTGGCAATTTACAATAGACTTCCTACGGTACAACAACGAGGCACGTTACAACGTCCTCGACGATATACCGTTCAAGTTCTGTCCGTGTTGGAAGCAGCTAGTAGGTGGCCAGAAGGACTACACCGTCAACCCGAAGTACGCAAGGAAGACACAAATAAAGGGAGGTATCCCTTCCATCATTCTAGTCAATTACGACGAAGATTGGTTGAAGGTGATGACTCCAGCGCAGCTGGACTACTTCTACGACAACTGCGTTGTGTATCAGATGGAACTTCATGAGAAGTTCTACACTCCCTCTTAG
Protein Sequence MSAESITVATPPTTQQPTTEDVVFQPSTTVDPTQPLRRFAFKCANVFLTYSRCNLTPQEAGEHLWDLARPWTPAYICVSAELHQDGTPHLHALLQSIRPITTRDPLFFDMQMYHPNIKAARSSNRTRDYILKNPISTFERGTFIPRGGMDPGSSAGNTRPATRDQRMKEIMNSSTTKSEYLSAIQTAFPFEWATKLHHFEYSAERLFPTAASPFIPPSIPSPPDLMCHERIEEWQSENLFQGDASARQHRPRSLYIVGPTRTGKTTWARSIEPLRHNYWQFTIDFLRYNNEARYNVLDDIPFKFCPCWKQLVGGQKDYTVNPKYARKTQIKGGIPSIILVNYDEDWLKVMTPAQLDYFYDNCVVYQMELHEKFYTPS

NCBI Accession YP_010087229.1
Location 1725-2666
Protein Name RepA
Coding Region ATGAGTGCGGAAAGCATTACCGTGGCTACACCACCCACCACCCAGCAGCCAACCACGGAAGACGTGGTCTTCCAACCAAGTACCACCGTCGACCCAACCCAGCCGCTCCGAAGGTTCGCCTTCAAGTGCGCGAATGTTTTCCTCACCTATTCACGCTGCAACCTCACCCCCCAGGAGGCAGGTGAACATCTCTGGGATCTCGCACGCCCATGGACTCCTGCTTACATTTGTGTTTCTGCTGAGCTTCACCAAGATGGGACCCCTCACCTTCACGCTCTTTTACAGAGCATTCGTCCTATTACAACTAGGGATCCTCTGTTTTTTGACATGCAGATGTATCATCCTAACATCAAAGCTGCTCGCAGTTCAAACAGAACTCGAGACTATATCCTCAAGAATCCGATTTCCACTTTCGAGAGAGGTACATTCATTCCTCGTGGAGGAATGGACCCAGGGTCCAGCGCTGGGAATACCCGTCCTGCAACCCGAGATCAACGCATGAAAGAGATCATGAACTCTTCTACCACGAAGAGTGAATACCTCTCTGCTATCCAAACTGCATTTCCATTCGAGTGGGCCACCAAACTGCATCACTTTGAATACTCAGCCGAAAGGTTGTTTCCAACAGCTGCATCACCCTTCATACCACCTTCGATACCATCACCACCTGATCTCATGTGTCACGAGAGGATTGAGGAATGGCAGTCCGAAAACCTTTTCCAGGTACACCCTATGATATACATGCTTGAACATTCTGACTGTCCTAACATCGAGCAAGCTGCTGAAACTCTTAAATGGATGCATGACACCACCAGGGAGATGCTAGCGCAAGGCAGCATCGACCCAGGAGCCTATATATCGTCGGCCCAACACGAACAGGAAAGACAACTTGGGCTCGCAGCATCGAGCCTCTTAGACACAACTACTGGCAATTTACAATAG
Protein Sequence MSAESITVATPPTTQQPTTEDVVFQPSTTVDPTQPLRRFAFKCANVFLTYSRCNLTPQEAGEHLWDLARPWTPAYICVSAELHQDGTPHLHALLQSIRPITTRDPLFFDMQMYHPNIKAARSSNRTRDYILKNPISTFERGTFIPRGGMDPGSSAGNTRPATRDQRMKEIMNSSTTKSEYLSAIQTAFPFEWATKLHHFEYSAERLFPTAASPFIPPSIPSPPDLMCHERIEEWQSENLFQVHPMIYMLEHSDCPNIEQAAETLKWMHDTTREMLAQGSIDPGAYISSAQHEQERQLGLAASSLLDTTTGNLQ

References More References in PubMed

1

Maize necrotic streak virus, a New Maize Virus with Similarity to Species of the Family Tombusviridae.

Louie R, et al.  Plant Dis. 2000 Oct;84(10):1133-1139. doi: 10.1094/PDIS.2000.84.10.1133.

PMID: 30831907

2

Maize Lethal Necrosis: An Emerging, Synergistic Viral Disease.

Redinbaugh MG, et al.  Annu Rev Virol. 2018 Sep 29;5(1):301-322. doi: 10.1146/annurev-virology-092917-043413. Epub 2018 Jul 30.

PMID: 30059641

3

Maize fine streak virus, a New Leafhopper-Transmitted Rhabdovirus.

Redinbaugh MG, et al.  Phytopathology. 2002 Nov;92(11):1167-74. doi: 10.1094/PHYTO.2002.92.11.1167.

PMID: 18944241

4

Transcriptome of the Maize Leafhopper (Dalbulus maidis) and Its Transcriptional Response to Maize Rayado Fino Virus (MRFV), Which It Transmits in a Persistent, Propagative Manner.

Xu J, et al.  Microbiol Spectr. 2021 Dec 22;9(3):e0061221. doi: 10.1128/Spectrum.00612-21. Epub 2021 Nov 24.

PMID: 34817206

5

Virus Diseases of Cereal and Oilseed Crops in Australia: Current Position and Future Challenges.

Jones RAC, et al.  Viruses. 2021 Oct 12;13(10):2051. doi: 10.3390/v13102051.

PMID: 34696481

6

A Review of Vector-Borne Rice Viruses.

Wang P, et al.  Viruses. 2022 Oct 14;14(10):2258. doi: 10.3390/v14102258.

PMID: 36298813

7

Recombinase Polymerase Amplification Assay for Simultaneous Detection of Maize Chlorotic Mottle Virus and Sugarcane Mosaic Virus in Maize.

Gao X, et al.  ACS Omega. 2021 Jul 6;6(28):18008-18013. doi: 10.1021/acsomega.1c01767. eCollection 2021 Jul 20.

PMID: 34308035

8

Genetic analysis of resistance to six virus diseases in a multiple virus-resistant maize inbred line.

Zambrano JL, et al.  Theor Appl Genet. 2014 Apr;127(4):867-80. doi: 10.1007/s00122-014-2263-5. Epub 2014 Feb 6.

PMID: 24500307

9

Global Plant Virus Disease Pandemics and Epidemics.

Jones RAC.  Plants (Basel). 2021 Jan 25;10(2):233. doi: 10.3390/plants10020233.

PMID: 33504044

10

First Report of Maize chlorotic mottle virus Infecting Sugarcane (Saccharum officinarum).

Wang Q, et al.  Plant Dis. 2014 Apr;98(4):572. doi: 10.1094/PDIS-07-13-0727-PDN.

PMID: 30708716