Genus | Begomovirus |
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NCBI Assembly | GCF_001316395.1 |
Isolate | India: Ahmedabad |
Release date | 2015/10/16 |
Submitter | Chahwala,F.D., Bhatt,B.S., Rathore,S., Singh,A.K. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_009170676.1 |
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Location | 149-496 |
Gene Name | AV2 |
Protein Name | precoat protein |
Coding Region | ATGTGGGATCCATTAGTAAACGAGTTCCCCGAAACCGTTCACGGTTTTAGGTGTATGCTTGCTATCAAATATCTGCAGTTGGTAGAAAATACGTATTCCCCTGATTCATTGGGATACGACTTGATACGAGAATTAATATCCGTTATTAGAGCGAAAAACTATGTCCAAGCGTCCAGCAGATATGATCATTTCCGCGCCCGTCTCGAAGTATCGTCGACTGCTGACCTCAACCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGTCAACAGGCCCACCAATCGGAAGCCGATGTTTTACAGAATGTACAGAAGTCCTGA |
Protein Sequence | MWDPLVNEFPETVHGFRCMLAIKYLQLVENTYSPDSLGYDLIRELISVIRAKNYVQASSRYDHFRARLEVSSTADLNQPIQQACCCPHCPRHKGKGMGQQAHQSEADVLQNVQKS |
NCBI Accession | YP_009170677.1 |
---|---|
Location | 309-1079 |
Gene Name | AV1 |
Protein Name | coat protein |
Coding Region | ATGTCCAAGCGTCCAGCAGATATGATCATTTCCGCGCCCGTCTCGAAGTATCGTCGACTGCTGACCTCAACCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGTCAACAGGCCCACCAATCGGAAGCCGATGTTTTACAGAATGTACAGAAGTCCTGATGTCCCCACAGGGTGTGAGGGTCCATGTAAGGTTCAGTCTTTTGAGTCTAGACACGATGTCGTTCATATAGGTAAGGTCATGTGTATTAGTGATGTTACCCGCGGTACTGGGTTAACCCATAGGGTAGGTAAGCGTTTTTGTGTTAAGTCCGTGTATGTATTAGGCAAAATATGGATGGATGAGAATATCAAAACGAAGAATCACACGAACAGTGTGATGTTCTTCCTCGTCCGTGATCGTCGCCCTGTTGATAAACCACAAGATTTTGGAGAGGTCTTCAACATGTTTGACAACGAGCCTAGCACTGCAACTGTGAAGAATATGCATAGGGGGTACCAGGTGTTGCGGAAGTGGCATGCAACCGTCACTGGTGGACAATATGCGTCGAAGGAACAGGCCTTAGTGAAGAAGTTTGTTAGGGTTAACAATTATGTTGTTTATAACCAGCAGGAGGCTGGGAAATATGAAAACCACACGGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGCTTAAGATTCGTATCTACTTTTACGACTCTGTACAACGAAATTAA |
Protein Sequence | MSKRPADMIISAPVSKYRRLLTSTSPYSKRAAVRIVRATKGKEWVNRPTNRKPMFYRMYRSPDVPTGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRGYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVQRN |
NCBI Accession | YP_009170678.1 |
---|---|
Location | 1076-1480 |
Gene Name | C3 |
Protein Name | Ren |
Coding Region | ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAACCGAGCACCACAACAAGCCATTCCTCAGGAACCGAGACATCATCACCGTGCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAGTGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTATTTAGGACCCAAGTGTTGCAATATATTAATAATTTTGCTGTAATTTCCATAAACAATGTAATTCGAGCTGTGGACCATGTATTATGGAATGTATTAGCCCAAACAGTTTATGTACAAAGTTCACACATAATAAAATTCAACATTTATTAA |
Protein Sequence | MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNKPFLRNRDIITVQIQFNHNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLQYINNFAVISINNVIRAVDHVLWNVLAQTVYVQSSHIIKFNIY |
NCBI Accession | YP_009170679.1 |
---|---|
Location | 1221-1625 |
Gene Name | C2 |
Protein Name | TrAP |
Coding Region | ATGCGACCTTCATCACCCTCACAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTGGCCAAGAAGGGGACCCGGCGTCGTCGCGTTGACCTAGATTGCGGCTGCTCATATTTCATCGCATTACGCTGCCACGGCTATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAACCGAGCACCACAACAAGCCATTCCTCAGGAACCGAGACATCATCACCGTGCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAGTGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTATTTAG |
Protein Sequence | MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALRCHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPQQAIPQEPRHHHRADTVQSQPEESVGDTQVFSNLPNLDDLTASDWSFLKGI |
NCBI Accession | YP_009170680.1 |
---|---|
Location | 1528-2613 |
Gene Name | C1 |
Protein Name | rep protein |
Coding Region | ATGCCTAGGACAGGAAGATTCAATATAAATGCTAAAAATTATTTCCTCACATATCCCAACTGCTCTCTCACTAAAGAAGAGGCACTTTCCCAATTACAAAACTTACAAACCCCTGTGAATAAATTATTTATTAGGGTTTGCAGAGAATTGCACGAGAATGGGGAACCTCATCTACACGTGCTCGTCCAATTCGAGGGGAAATATCAATGCACAAACAACAGATTCTTCGACCTCATTTCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGAGAGCTAAGAGCTCTTCAGATGTCAAAGCCTATGTGGAGAAAGACGGAGACTTCATTGACTTTGGAGTTTTCCAGATCGATGGCAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAGTCTTCGGCCCTCAATATTTTAAGGGAGAAAGCTCCAAAAGATTATGTTTTACAATTTCATAATTTAAATTCTAATTTAGATAGGATTTTTACACCTCCACCGGAGGTTTATGTATCTCCTTTTCTATCTTCTTCTTTCGATCAAGTTCCGGCAGAACTTGAAGACTGGGCTTCTGAGAACGTGATGGGTGCCGCTGCGCGGCCTTTGAGACCCATGAGTATTGTGATTGAGGGTGATAGTAGGACTGGCAAGACCATGTGGGCTAGGTCTTTGGGTCCACATAACTACCTATGTGGTCACTTAGACCTCAGCCCTAAAGTGTACAGCAATGATGCTTGGTATAACGTCATTGATGACGTTGATCCGCATTATCTAAAACACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAATCAAATACAAAATACGGAAAGCCAGTTCAAATTAAAGGTGGAATTCCCGCTATCTTCCTCTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTTCTTGGATGAAGAGAAGAATTCCGCACTCAAACATTGGGCTTTAAAGAATGCGACCTTCATCACCCTCACAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTGGCCAAGAAGGGGACCCGGCGTCGTCGCGTTGA |
Protein Sequence | MPRTGRFNINAKNYFLTYPNCSLTKEEALSQLQNLQTPVNKLFIRVCRELHENGEPHLHVLVQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYVEKDGDFIDFGVFQIDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFHNLNSNLDRIFTPPPEVYVSPFLSSSFDQVPAELEDWASENVMGAAARPLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFITLTGPLYSGSNQSAAQAGQEGDPASSR |
NCBI Accession | YP_009170681.1 |
---|---|
Location | 2163-2456 |
Gene Name | C4 |
Protein Name | C4 |
Coding Region | ATGGGGAACCTCATCTACACGTGCTCGTCCAATTCGAGGGGAAATATCAATGCACAAACAACAGATTCTTCGACCTCATTTCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGAGAGCTAAGAGCTCTTCAGATGTCAAAGCCTATGTGGAGAAAGACGGAGACTTCATTGACTTTGGAGTTTTCCAGATCGATGGCAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAGTCTTCGGCCCTCAATATTTTAA |
Protein Sequence | MGNLIYTCSSNSRGNINAQTTDSSTSFPQPGQHISIQTFRELRALQMSKPMWRKTETSLTLEFSRSMADQLEEVANLPTTHMPRQSIQGPSLRPSIF |
1 |
Sravya G, et al. Theory Biosci. 2023 Feb;142(1):47-60. doi: 10.1007/s12064-022-00383-9. Epub 2023 Jan 6. PMID: 36607541 |
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2 |
Mishra M, et al. 3 Biotech. 2020 Apr;10(4):169. doi: 10.1007/s13205-020-2159-9. Epub 2020 Mar 16. PMID: 32206503 |
3 |
Venkataravanappa V, et al. Microb Pathog. 2023 Jul;180:106127. doi: 10.1016/j.micpath.2023.106127. Epub 2023 Apr 28. PMID: 37119939 |
4 |
Bhatt BS, et al. Arch Virol. 2016 May;161(5):1389-94. doi: 10.1007/s00705-016-2769-z. Epub 2016 Jan 30. PMID: 26831933 |