Chilli leaf curl Ahmedabad virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_001316395.1 |
| Isolate |
India: Ahmedabad |
| Release date |
2015/10/16 |
| Submitter |
Chahwala,F.D., Bhatt,B.S., Rathore,S., Singh,A.K. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTACCCTGGTCCCCACCACACGCACTAACGGACAAATACACGTGGACCAATGAAATTGGCTCCTCATCGCTAAATTATTAAATGGTCCCCTATTTAAACTTGGTCCCCAAGTAGTGCACACCAACCAATGTGGGATCCATTAGTAAACGAGTTCCCCGAAACCGTTCACGGTTTTAGGTGTATGCTTGCTATCAAATATCTGCAGTTGGTAGAAAATACGTATTCCCCTGATTCATTGGGATACGACTTGATACGAGAATTAATATCCGTTATTAGAGCGAAAAACTATGTCCAAGCGTCCAGCAGATATGATCATTTCCGCGCCCGTCTCGAAGTATCGTCGACTGCTGACCTCAACCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGTCAACAGGCCCACCAATCGGAAGCCGATGTTTTACAGAATGTACAGAAGTCCTGATGTCCCCACAGGGTGTGAGGGTCCATGTAAGGTTCAGTCTTTTGAGTCTAGACACGATGTCGTTCATATAGGTAAGGTCATGTGTATTAGTGATGTTACCCGCGGTACTGGGTTAACCCATAGGGTAGGTAAGCGTTTTTGTGTTAAGTCCGTGTATGTATTAGGCAAAATATGGATGGATGAGAATATCAAAACGAAGAATCACACGAACAGTGTGATGTTCTTCCTCGTCCGTGATCGTCGCCCTGTTGATAAACCACAAGATTTTGGAGAGGTCTTCAACATGTTTGACAACGAGCCTAGCACTGCAACTGTGAAGAATATGCATAGGGGGTACCAGGTGTTGCGGAAGTGGCATGCAACCGTCACTGGTGGACAATATGCGTCGAAGGAACAGGCCTTAGTGAAGAAGTTTGTTAGGGTTAACAATTATGTTGTTTATAACCAGCAGGAGGCTGGGAAATATGAAAACCACACGGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGCTTAAGATTCGTATCTACTTTTACGACTCTGTACAACGAAATTAATAAATGTTGAATTTTATTATGTGTGAACTTTGTACATAAACTGTTTGGGCTAATACATTCCATAATACATGGTCCACAGCTCGAATTACATTGTTTATGGAAATTACAGCAAAATTATTAATATATTGCAACACTTGGGTCCTAAATACCCTTAAGAAATGACCAGTCCGAGGCTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACACTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGCACGGTGATGATGTCTCGGTTCCTGAGGAATGGCTTGTTGTGGTGCTCGGTTATCTTGAAATACAGGGGATTTGTTATCTCCCAGATAAACACGCCATTCTCTGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATAGCCGTGGCAGCGTAATGCGATGAAATATGAGCAGCCGCAATCTAGGTCAACGCGACGACGCCGGGTCCCCTTCTTGGCCAGCCTGTGCTGCACTTTGATTGGAACCTGAGTAGAGTGGGCCTGTGAGGGTGATGAAGGTCGCATTCTTTAAAGCCCAATGTTTGAGTGCGGAATTCTTCTCTTCATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGATAATGCGGATCAACGTCATCAATGACGTTATACCAAGCATCATTGCTGTACACTTTAGGGCTGAGGTCTAAGTGACCACATAGGTAGTTATGTGGACCCAAAGACCTAGCCCACATGGTCTTGCCAGTCCTACTATCACCCTCAATCACAATACTCATGGGTCTCAAAGGCCGCGCAGCGGCACCCATCACGTTCTCAGAAGCCCAGTCTTCAAGTTCTGCCGGAACTTGATCGAAAGAAGAAGATAGAAAAGGAGATACATAAACCTCCGGTGGAGGTGTAAAAATCCTATCTAAATTAGAATTTAAATTATGAAATTGTAAAACATAATCTTTTGGAGCTTTCTCCCTTAAAATATTGAGGGCCGAAGACTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTGCCATCGATCTGGAAAACTCCAAAGTCAATGAAGTCTCCGTCTTTCTCCACATAGGCTTTGACATCTGAAGAGCTCTTAGCTCTCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGAAATGAGGTCGAAGAATCTGTTGTTTGTGCATTGATATTTCCCCTCGAATTGGACGAGCACGTGTAGATGAGGTTCCCCATTCTCGTGCAATTCTCTGCAAACCCTAATAAATAATTTATTCACAGGGGTTTGTAAGTTTTGTAATTGGGAAAGTGCCTCTTCTTTAGTGAGAGAGCAGTTGGGATATGTGAGGAAATAATTTTTAGCATTTATATTGAATCTTCCTGTCCTAGGCATATTGGTGGACACTCAAACTTACTATGCAATCGGTGGAATGGTGGACAATATATATGTGTCCACCAATGGCAAATTGGTAATTACAAAAAATAATTGAAAGTCCGTAAATCGCGGCCATCCGCATTAATATT
Gene Information
|
NCBI Accession
|
YP_009170676.1
|
|
Location
|
149-496 |
|
Gene Name
|
AV2 |
|
Protein Name
|
precoat protein |
|
Coding Region
|
ATGTGGGATCCATTAGTAAACGAGTTCCCCGAAACCGTTCACGGTTTTAGGTGTATGCTTGCTATCAAATATCTGCAGTTGGTAGAAAATACGTATTCCCCTGATTCATTGGGATACGACTTGATACGAGAATTAATATCCGTTATTAGAGCGAAAAACTATGTCCAAGCGTCCAGCAGATATGATCATTTCCGCGCCCGTCTCGAAGTATCGTCGACTGCTGACCTCAACCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGTCAACAGGCCCACCAATCGGAAGCCGATGTTTTACAGAATGTACAGAAGTCCTGA |
|
Protein Sequence
|
MWDPLVNEFPETVHGFRCMLAIKYLQLVENTYSPDSLGYDLIRELISVIRAKNYVQASSRYDHFRARLEVSSTADLNQPIQQACCCPHCPRHKGKGMGQQAHQSEADVLQNVQKS |
|
NCBI Accession
|
YP_009170677.1
|
|
Location
|
309-1079 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCCAAGCGTCCAGCAGATATGATCATTTCCGCGCCCGTCTCGAAGTATCGTCGACTGCTGACCTCAACCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGTCAACAGGCCCACCAATCGGAAGCCGATGTTTTACAGAATGTACAGAAGTCCTGATGTCCCCACAGGGTGTGAGGGTCCATGTAAGGTTCAGTCTTTTGAGTCTAGACACGATGTCGTTCATATAGGTAAGGTCATGTGTATTAGTGATGTTACCCGCGGTACTGGGTTAACCCATAGGGTAGGTAAGCGTTTTTGTGTTAAGTCCGTGTATGTATTAGGCAAAATATGGATGGATGAGAATATCAAAACGAAGAATCACACGAACAGTGTGATGTTCTTCCTCGTCCGTGATCGTCGCCCTGTTGATAAACCACAAGATTTTGGAGAGGTCTTCAACATGTTTGACAACGAGCCTAGCACTGCAACTGTGAAGAATATGCATAGGGGGTACCAGGTGTTGCGGAAGTGGCATGCAACCGTCACTGGTGGACAATATGCGTCGAAGGAACAGGCCTTAGTGAAGAAGTTTGTTAGGGTTAACAATTATGTTGTTTATAACCAGCAGGAGGCTGGGAAATATGAAAACCACACGGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGCTTAAGATTCGTATCTACTTTTACGACTCTGTACAACGAAATTAA |
|
Protein Sequence
|
MSKRPADMIISAPVSKYRRLLTSTSPYSKRAAVRIVRATKGKEWVNRPTNRKPMFYRMYRSPDVPTGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRGYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVQRN |
|
NCBI Accession
|
YP_009170678.1
|
|
Location
|
1076-1480 |
|
Gene Name
|
C3 |
|
Protein Name
|
Ren |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAACCGAGCACCACAACAAGCCATTCCTCAGGAACCGAGACATCATCACCGTGCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAGTGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTATTTAGGACCCAAGTGTTGCAATATATTAATAATTTTGCTGTAATTTCCATAAACAATGTAATTCGAGCTGTGGACCATGTATTATGGAATGTATTAGCCCAAACAGTTTATGTACAAAGTTCACACATAATAAAATTCAACATTTATTAA |
|
Protein Sequence
|
MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNKPFLRNRDIITVQIQFNHNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLQYINNFAVISINNVIRAVDHVLWNVLAQTVYVQSSHIIKFNIY |
|
NCBI Accession
|
YP_009170679.1
|
|
Location
|
1221-1625 |
|
Gene Name
|
C2 |
|
Protein Name
|
TrAP |
|
Coding Region
|
ATGCGACCTTCATCACCCTCACAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTGGCCAAGAAGGGGACCCGGCGTCGTCGCGTTGACCTAGATTGCGGCTGCTCATATTTCATCGCATTACGCTGCCACGGCTATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAACCGAGCACCACAACAAGCCATTCCTCAGGAACCGAGACATCATCACCGTGCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAGTGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTATTTAG |
|
Protein Sequence
|
MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALRCHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPQQAIPQEPRHHHRADTVQSQPEESVGDTQVFSNLPNLDDLTASDWSFLKGI |
|
NCBI Accession
|
YP_009170680.1
|
|
Location
|
1528-2613 |
|
Gene Name
|
C1 |
|
Protein Name
|
rep protein |
|
Coding Region
|
ATGCCTAGGACAGGAAGATTCAATATAAATGCTAAAAATTATTTCCTCACATATCCCAACTGCTCTCTCACTAAAGAAGAGGCACTTTCCCAATTACAAAACTTACAAACCCCTGTGAATAAATTATTTATTAGGGTTTGCAGAGAATTGCACGAGAATGGGGAACCTCATCTACACGTGCTCGTCCAATTCGAGGGGAAATATCAATGCACAAACAACAGATTCTTCGACCTCATTTCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGAGAGCTAAGAGCTCTTCAGATGTCAAAGCCTATGTGGAGAAAGACGGAGACTTCATTGACTTTGGAGTTTTCCAGATCGATGGCAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAGTCTTCGGCCCTCAATATTTTAAGGGAGAAAGCTCCAAAAGATTATGTTTTACAATTTCATAATTTAAATTCTAATTTAGATAGGATTTTTACACCTCCACCGGAGGTTTATGTATCTCCTTTTCTATCTTCTTCTTTCGATCAAGTTCCGGCAGAACTTGAAGACTGGGCTTCTGAGAACGTGATGGGTGCCGCTGCGCGGCCTTTGAGACCCATGAGTATTGTGATTGAGGGTGATAGTAGGACTGGCAAGACCATGTGGGCTAGGTCTTTGGGTCCACATAACTACCTATGTGGTCACTTAGACCTCAGCCCTAAAGTGTACAGCAATGATGCTTGGTATAACGTCATTGATGACGTTGATCCGCATTATCTAAAACACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAATCAAATACAAAATACGGAAAGCCAGTTCAAATTAAAGGTGGAATTCCCGCTATCTTCCTCTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTTCTTGGATGAAGAGAAGAATTCCGCACTCAAACATTGGGCTTTAAAGAATGCGACCTTCATCACCCTCACAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTGGCCAAGAAGGGGACCCGGCGTCGTCGCGTTGA |
|
Protein Sequence
|
MPRTGRFNINAKNYFLTYPNCSLTKEEALSQLQNLQTPVNKLFIRVCRELHENGEPHLHVLVQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYVEKDGDFIDFGVFQIDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFHNLNSNLDRIFTPPPEVYVSPFLSSSFDQVPAELEDWASENVMGAAARPLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFITLTGPLYSGSNQSAAQAGQEGDPASSR |
|
NCBI Accession
|
YP_009170681.1
|
|
Location
|
2163-2456 |
|
Gene Name
|
C4 |
|
Protein Name
|
C4 |
|
Coding Region
|
ATGGGGAACCTCATCTACACGTGCTCGTCCAATTCGAGGGGAAATATCAATGCACAAACAACAGATTCTTCGACCTCATTTCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGAGAGCTAAGAGCTCTTCAGATGTCAAAGCCTATGTGGAGAAAGACGGAGACTTCATTGACTTTGGAGTTTTCCAGATCGATGGCAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAGTCTTCGGCCCTCAATATTTTAA |
|
Protein Sequence
|
MGNLIYTCSSNSRGNINAQTTDSSTSFPQPGQHISIQTFRELRALQMSKPMWRKTETSLTLEFSRSMADQLEEVANLPTTHMPRQSIQGPSLRPSIF |