Chilli leaf curl Ahmedabad virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_001316395.1
Isolate India: Ahmedabad
Release date 2015/10/16
Submitter Chahwala,F.D., Bhatt,B.S., Rathore,S., Singh,A.K.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_028046
ACCGGATGGCCGCGATTTTTTTTACCCTGGTCCCCACCACACGCACTAACGGACAAATACACGTGGACCAATGAAATTGGCTCCTCATCGCTAAATTATTAAATGGTCCCCTATTTAAACTTGGTCCCCAAGTAGTGCACACCAACCAATGTGGGATCCATTAGTAAACGAGTTCCCCGAAACCGTTCACGGTTTTAGGTGTATGCTTGCTATCAAATATCTGCAGTTGGTAGAAAATACGTATTCCCCTGATTCATTGGGATACGACTTGATACGAGAATTAATATCCGTTATTAGAGCGAAAAACTATGTCCAAGCGTCCAGCAGATATGATCATTTCCGCGCCCGTCTCGAAGTATCGTCGACTGCTGACCTCAACCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGTCAACAGGCCCACCAATCGGAAGCCGATGTTTTACAGAATGTACAGAAGTCCTGATGTCCCCACAGGGTGTGAGGGTCCATGTAAGGTTCAGTCTTTTGAGTCTAGACACGATGTCGTTCATATAGGTAAGGTCATGTGTATTAGTGATGTTACCCGCGGTACTGGGTTAACCCATAGGGTAGGTAAGCGTTTTTGTGTTAAGTCCGTGTATGTATTAGGCAAAATATGGATGGATGAGAATATCAAAACGAAGAATCACACGAACAGTGTGATGTTCTTCCTCGTCCGTGATCGTCGCCCTGTTGATAAACCACAAGATTTTGGAGAGGTCTTCAACATGTTTGACAACGAGCCTAGCACTGCAACTGTGAAGAATATGCATAGGGGGTACCAGGTGTTGCGGAAGTGGCATGCAACCGTCACTGGTGGACAATATGCGTCGAAGGAACAGGCCTTAGTGAAGAAGTTTGTTAGGGTTAACAATTATGTTGTTTATAACCAGCAGGAGGCTGGGAAATATGAAAACCACACGGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGCTTAAGATTCGTATCTACTTTTACGACTCTGTACAACGAAATTAATAAATGTTGAATTTTATTATGTGTGAACTTTGTACATAAACTGTTTGGGCTAATACATTCCATAATACATGGTCCACAGCTCGAATTACATTGTTTATGGAAATTACAGCAAAATTATTAATATATTGCAACACTTGGGTCCTAAATACCCTTAAGAAATGACCAGTCCGAGGCTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACACTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGCACGGTGATGATGTCTCGGTTCCTGAGGAATGGCTTGTTGTGGTGCTCGGTTATCTTGAAATACAGGGGATTTGTTATCTCCCAGATAAACACGCCATTCTCTGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATAGCCGTGGCAGCGTAATGCGATGAAATATGAGCAGCCGCAATCTAGGTCAACGCGACGACGCCGGGTCCCCTTCTTGGCCAGCCTGTGCTGCACTTTGATTGGAACCTGAGTAGAGTGGGCCTGTGAGGGTGATGAAGGTCGCATTCTTTAAAGCCCAATGTTTGAGTGCGGAATTCTTCTCTTCATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGATAATGCGGATCAACGTCATCAATGACGTTATACCAAGCATCATTGCTGTACACTTTAGGGCTGAGGTCTAAGTGACCACATAGGTAGTTATGTGGACCCAAAGACCTAGCCCACATGGTCTTGCCAGTCCTACTATCACCCTCAATCACAATACTCATGGGTCTCAAAGGCCGCGCAGCGGCACCCATCACGTTCTCAGAAGCCCAGTCTTCAAGTTCTGCCGGAACTTGATCGAAAGAAGAAGATAGAAAAGGAGATACATAAACCTCCGGTGGAGGTGTAAAAATCCTATCTAAATTAGAATTTAAATTATGAAATTGTAAAACATAATCTTTTGGAGCTTTCTCCCTTAAAATATTGAGGGCCGAAGACTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTGCCATCGATCTGGAAAACTCCAAAGTCAATGAAGTCTCCGTCTTTCTCCACATAGGCTTTGACATCTGAAGAGCTCTTAGCTCTCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGAAATGAGGTCGAAGAATCTGTTGTTTGTGCATTGATATTTCCCCTCGAATTGGACGAGCACGTGTAGATGAGGTTCCCCATTCTCGTGCAATTCTCTGCAAACCCTAATAAATAATTTATTCACAGGGGTTTGTAAGTTTTGTAATTGGGAAAGTGCCTCTTCTTTAGTGAGAGAGCAGTTGGGATATGTGAGGAAATAATTTTTAGCATTTATATTGAATCTTCCTGTCCTAGGCATATTGGTGGACACTCAAACTTACTATGCAATCGGTGGAATGGTGGACAATATATATGTGTCCACCAATGGCAAATTGGTAATTACAAAAAATAATTGAAAGTCCGTAAATCGCGGCCATCCGCATTAATATT

Gene Information

NCBI Accession YP_009170676.1
Location 149-496
Gene Name AV2
Protein Name precoat protein
Coding Region ATGTGGGATCCATTAGTAAACGAGTTCCCCGAAACCGTTCACGGTTTTAGGTGTATGCTTGCTATCAAATATCTGCAGTTGGTAGAAAATACGTATTCCCCTGATTCATTGGGATACGACTTGATACGAGAATTAATATCCGTTATTAGAGCGAAAAACTATGTCCAAGCGTCCAGCAGATATGATCATTTCCGCGCCCGTCTCGAAGTATCGTCGACTGCTGACCTCAACCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGTCAACAGGCCCACCAATCGGAAGCCGATGTTTTACAGAATGTACAGAAGTCCTGA
Protein Sequence MWDPLVNEFPETVHGFRCMLAIKYLQLVENTYSPDSLGYDLIRELISVIRAKNYVQASSRYDHFRARLEVSSTADLNQPIQQACCCPHCPRHKGKGMGQQAHQSEADVLQNVQKS

NCBI Accession YP_009170677.1
Location 309-1079
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCCAAGCGTCCAGCAGATATGATCATTTCCGCGCCCGTCTCGAAGTATCGTCGACTGCTGACCTCAACCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGTCAACAGGCCCACCAATCGGAAGCCGATGTTTTACAGAATGTACAGAAGTCCTGATGTCCCCACAGGGTGTGAGGGTCCATGTAAGGTTCAGTCTTTTGAGTCTAGACACGATGTCGTTCATATAGGTAAGGTCATGTGTATTAGTGATGTTACCCGCGGTACTGGGTTAACCCATAGGGTAGGTAAGCGTTTTTGTGTTAAGTCCGTGTATGTATTAGGCAAAATATGGATGGATGAGAATATCAAAACGAAGAATCACACGAACAGTGTGATGTTCTTCCTCGTCCGTGATCGTCGCCCTGTTGATAAACCACAAGATTTTGGAGAGGTCTTCAACATGTTTGACAACGAGCCTAGCACTGCAACTGTGAAGAATATGCATAGGGGGTACCAGGTGTTGCGGAAGTGGCATGCAACCGTCACTGGTGGACAATATGCGTCGAAGGAACAGGCCTTAGTGAAGAAGTTTGTTAGGGTTAACAATTATGTTGTTTATAACCAGCAGGAGGCTGGGAAATATGAAAACCACACGGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGCTTAAGATTCGTATCTACTTTTACGACTCTGTACAACGAAATTAA
Protein Sequence MSKRPADMIISAPVSKYRRLLTSTSPYSKRAAVRIVRATKGKEWVNRPTNRKPMFYRMYRSPDVPTGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRGYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVQRN

NCBI Accession YP_009170678.1
Location 1076-1480
Gene Name C3
Protein Name Ren
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAACCGAGCACCACAACAAGCCATTCCTCAGGAACCGAGACATCATCACCGTGCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAGTGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTATTTAGGACCCAAGTGTTGCAATATATTAATAATTTTGCTGTAATTTCCATAAACAATGTAATTCGAGCTGTGGACCATGTATTATGGAATGTATTAGCCCAAACAGTTTATGTACAAAGTTCACACATAATAAAATTCAACATTTATTAA
Protein Sequence MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNKPFLRNRDIITVQIQFNHNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLQYINNFAVISINNVIRAVDHVLWNVLAQTVYVQSSHIIKFNIY

NCBI Accession YP_009170679.1
Location 1221-1625
Gene Name C2
Protein Name TrAP
Coding Region ATGCGACCTTCATCACCCTCACAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTGGCCAAGAAGGGGACCCGGCGTCGTCGCGTTGACCTAGATTGCGGCTGCTCATATTTCATCGCATTACGCTGCCACGGCTATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAACCGAGCACCACAACAAGCCATTCCTCAGGAACCGAGACATCATCACCGTGCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAGTGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTATTTAG
Protein Sequence MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALRCHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPQQAIPQEPRHHHRADTVQSQPEESVGDTQVFSNLPNLDDLTASDWSFLKGI

NCBI Accession YP_009170680.1
Location 1528-2613
Gene Name C1
Protein Name rep protein
Coding Region ATGCCTAGGACAGGAAGATTCAATATAAATGCTAAAAATTATTTCCTCACATATCCCAACTGCTCTCTCACTAAAGAAGAGGCACTTTCCCAATTACAAAACTTACAAACCCCTGTGAATAAATTATTTATTAGGGTTTGCAGAGAATTGCACGAGAATGGGGAACCTCATCTACACGTGCTCGTCCAATTCGAGGGGAAATATCAATGCACAAACAACAGATTCTTCGACCTCATTTCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGAGAGCTAAGAGCTCTTCAGATGTCAAAGCCTATGTGGAGAAAGACGGAGACTTCATTGACTTTGGAGTTTTCCAGATCGATGGCAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAGTCTTCGGCCCTCAATATTTTAAGGGAGAAAGCTCCAAAAGATTATGTTTTACAATTTCATAATTTAAATTCTAATTTAGATAGGATTTTTACACCTCCACCGGAGGTTTATGTATCTCCTTTTCTATCTTCTTCTTTCGATCAAGTTCCGGCAGAACTTGAAGACTGGGCTTCTGAGAACGTGATGGGTGCCGCTGCGCGGCCTTTGAGACCCATGAGTATTGTGATTGAGGGTGATAGTAGGACTGGCAAGACCATGTGGGCTAGGTCTTTGGGTCCACATAACTACCTATGTGGTCACTTAGACCTCAGCCCTAAAGTGTACAGCAATGATGCTTGGTATAACGTCATTGATGACGTTGATCCGCATTATCTAAAACACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAATCAAATACAAAATACGGAAAGCCAGTTCAAATTAAAGGTGGAATTCCCGCTATCTTCCTCTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTTCTTGGATGAAGAGAAGAATTCCGCACTCAAACATTGGGCTTTAAAGAATGCGACCTTCATCACCCTCACAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTGGCCAAGAAGGGGACCCGGCGTCGTCGCGTTGA
Protein Sequence MPRTGRFNINAKNYFLTYPNCSLTKEEALSQLQNLQTPVNKLFIRVCRELHENGEPHLHVLVQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYVEKDGDFIDFGVFQIDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFHNLNSNLDRIFTPPPEVYVSPFLSSSFDQVPAELEDWASENVMGAAARPLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFITLTGPLYSGSNQSAAQAGQEGDPASSR

NCBI Accession YP_009170681.1
Location 2163-2456
Gene Name C4
Protein Name C4
Coding Region ATGGGGAACCTCATCTACACGTGCTCGTCCAATTCGAGGGGAAATATCAATGCACAAACAACAGATTCTTCGACCTCATTTCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGAGAGCTAAGAGCTCTTCAGATGTCAAAGCCTATGTGGAGAAAGACGGAGACTTCATTGACTTTGGAGTTTTCCAGATCGATGGCAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAGTCTTCGGCCCTCAATATTTTAA
Protein Sequence MGNLIYTCSSNSRGNINAQTTDSSTSFPQPGQHISIQTFRELRALQMSKPMWRKTETSLTLEFSRSMADQLEEVANLPTTHMPRQSIQGPSLRPSIF

References More References in PubMed

1

Molecular characterization of chilli leaf curl Ahmedabad virus: homology modelling and evaluation of viral proteins interacting with host protein SnRK1 and docking against flavonoids-an in silico approach.

Sravya G, et al.  Theory Biosci. 2023 Feb;142(1):47-60. doi: 10.1007/s12064-022-00383-9. Epub 2023 Jan 6.

PMID: 36607541
2

Identification of Chilli leaf curl virus and associated betasatellite infecting Osteospermum fruticosum in Rajasthan, India.

Mishra M, et al.  3 Biotech. 2020 Apr;10(4):169. doi: 10.1007/s13205-020-2159-9. Epub 2020 Mar 16.

PMID: 32206503
3

Cross species transmission and recombination dynamics of chilli leaf curl virus: implications for host range expansion and LAMP-based detection.

Devaraj, et al.  3 Biotech. 2025 Aug;15(8):260. doi: 10.1007/s13205-025-04434-y. Epub 2025 Jul 19.

PMID: 40693173
4

Diversity and phylogeography of begomoviruses and DNA satellites associated with the leaf curl and mosaic disease complex of eggplant.

Venkataravanappa V, et al.  Microb Pathog. 2023 Jul;180:106127. doi: 10.1016/j.micpath.2023.106127. Epub 2023 Apr 28.

PMID: 37119939
5

Identification and molecular characterization of a new recombinant begomovirus and associated betasatellite DNA infecting Capsicum annuum in India.

Bhatt BS, et al.  Arch Virol. 2016 May;161(5):1389-94. doi: 10.1007/s00705-016-2769-z. Epub 2016 Jan 30.

PMID: 26831933
6

Molecular characterization to study the genetic diversity of begomoviruses occurring in the major chilli growing areas of Tamil Nadu state of India.

Jayanthi P, et al.  Int Microbiol. 2025 Apr;28(4):863-876. doi: 10.1007/s10123-024-00580-0. Epub 2024 Sep 4.

PMID: 39230779