Chickpea yellow dwarf virus
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_000927635.1 |
| Isolate |
Pakistan |
| Release date |
2015/2/22 |
| Submitter |
Kraberger,S., Mumtaz,H.H., Briddon,R.W., Martin,D.P., Varsani,A. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ATGCTTCCCGCTAAATACCAAGTCTTTCCTGGAGAAAATTACTCTTATACCCCAACTTTCGCGGGAAGTTATCAGGAAGTGCCTACCTCACATAATTCTTCTGGTGAGACTTTTAACAAAGTCTTTGTTGCCCTTATAGTTATATTAATTTCCGTTGGTGTCTGTTATTTGGCTTACGTACTATTCGTTAAGGATCTTATTCTTCTATTGAAGGCTAAAAAACAAAGGACTACAACAGAGATAGGATTTGGTAACACTCCAGGTAGACCTAACAGTCGAAGACAAGAGGATGCCGGGACCGTTTAGTGGTAAAACCTATTCAAGGAAGAAGGGTAAATATGCCAAGGCCTACAAAGCTCTTGGTGTGAAAAATCAAAAAGAACTGGAAGAGCTGGTAAATGCGCCTGCTTGTCCAGTTACTCCTAGACCTGCCTTACAGGTTGCTGAATATTTTTGGACTACGGACAAAAATGGAATGATATTCCGCTCTGGTGGTGGTACTGCTCATTTCACTATGTATCCTCAGGGTTCAAATGAGAATTGCAGACATTCCAACCAGACTAATACCTACAAGATGGCTATTAAGTGCTGGGTTGCATTGGATCCTACGTTCTACAAGAAGGTGGCATGTGTTCCTGTGCATTTCTGGTTGGTATACGACAAAGATCCGGGTAATACACTGCCTGGATGCTCTACCATTTTTGATACTCTGTATCAAGATTACCCGGGTACATGGACTGTATCCCGGAACGTTAGTCGTCGCTTTGTAGTTAAAAAACATTGGCACATTATCTTGGCCTCTAATGGAACGAATCCAACACAAGATCAAGACCCTGCTAAGTATGCTGGACCTGGACCTGTGTTTCAATGGAAACACATGAACAAGTTTTTTAAAAGACTTGGCGTAAGGACTGATTGGAAGAACTCAGCTACAGGTGAAGTAGCTGACATTAAGAGTGGAGCATTGTACTTAGTTTGTGCACCAAGTGGTGGTGCTGTTGTAAGGGTTGGGGGTAGATTCAGAATGTACTTCAAATCCGTTGGAAATCAATAAATTATTTTATTATTTTGTACATATTCTTATCTTACAATATGACCTTGAAAAATAAATACATAACAAAAAACACGCAAAAAATGAACAAAAAACAGAAAACAAACTTATATTATAAACTCTGAGTCAGAAGGAGAGGCACGTTTAGTGACTCGACGCTGCCGAAGCAATAAAAGTCTCTCCTTCACTCATTATATGGATTTTACAATTTAAATAAAAATATTCTCTCTGAGAATCTGACATACTCTCAAGCCAGTCCTCATCATTATTAACTATTATAATACATGGGATTCCTCCTTTAACCCTCTTCTTTTTGCCGTATTTAGGGTTAACTGTGAAATCCTTCTGTGACCCTACTAACTGCTTCCAGTTGGGGCAGAACTTGAAGGGGATGTCGTCGATGACGTTGTATGTTGCGTTGACGTCGTATGTAGTGAAATCGACCCCTCCGTTGAAGTAGTTGTGTCTTCCCAGACTTCTGGCCCAACTGGTCTTTCCGGTACGACTTGGTCCGCAGATGTAGAGGGATCTTCGCCGGAGTTGGAGTTGTTCGGGTTCCTGGTATAATCGTCCATCCAAATCAAGTCTTCAGTTGCAGTTTCTAAAGAAAGATGTGGATGGAGTAGTTGATAAGAATCTACACTTACAACATAGAGGTCTCTGTTAAGCCACTCAGTAATTTCTTCATGGCAGTGAAGAAATTCATCTGGAAATGGGCTTTGATAGGGTGGTTCTATATCTGGAAAGAGTTTGCTTGCACTGTATTCAAGCCAGTGAAGCTTAGTTGCCCATTCATGGGGGAATTCTTGTTTAATCATTTCCAGATACTCCTCTTTAGATGTTGCAGTCTGTATGATAGTTCTCCATCGTTCATCAGATTTGGTTGGGCTGACTCGATGGTTTCTGAAGTCACCTCTGGTGATGATGTTCCCGTCCTTGGATATGTATTCAAGAACCTGCTTTGAGTTCTTAGCAGGTTGGATATTTGGATGGTTTCCCTCAAAATCAAAAAAAGAAGGGTCCCGTATATCACATCTTTTGTCAAGCTGTATAAGACAGTGAAGATGGGGAGAACCATCTTGGTGAAGTTCAGTAGCAATAGCAATGAAAAAAATAGCAAGAGATGTGAGTTTGGACCAGAGAAAATCTCTGAGATTTTCTGCAGTAGAGGAGCTATGAGGATAAGTAAGGAAAACATATTTTGTTTGAAGTCTGAAAGAGTTGTTGTTTGTACGTCTTGGCATGGTTCCTCAAAACAGTGTTTCGAAAACTCTATCTTAACCAGTGAGTGAGGAAAATGAGGAACATATATAGAGAGGTAATTGGGCCTGTTGGGCCTGACACGTGGGCCGCACTCACTGAACTTTAATATTACCAGTGAGTGCGTCTGGCCCACGCGAGCGCGTTAGCGCGAGCGGATTGGTTCTCGCAAAGTAGAATCTCATGAGTGGATTATCTTGTCTATATAAAGGTGCTGCCTTTAATAATTTTCAAAG
Gene Information
|
NCBI Accession
|
YP_009104361.1
|
|
Location
|
1-306 |
|
Protein Name
|
movement protein |
|
Coding Region
|
ATGCTTCCCGCTAAATACCAAGTCTTTCCTGGAGAAAATTACTCTTATACCCCAACTTTCGCGGGAAGTTATCAGGAAGTGCCTACCTCACATAATTCTTCTGGTGAGACTTTTAACAAAGTCTTTGTTGCCCTTATAGTTATATTAATTTCCGTTGGTGTCTGTTATTTGGCTTACGTACTATTCGTTAAGGATCTTATTCTTCTATTGAAGGCTAAAAAACAAAGGACTACAACAGAGATAGGATTTGGTAACACTCCAGGTAGACCTAACAGTCGAAGACAAGAGGATGCCGGGACCGTTTAG |
|
Protein Sequence
|
MLPAKYQVFPGENYSYTPTFAGSYQEVPTSHNSSGETFNKVFVALIVILISVGVCYLAYVLFVKDLILLLKAKKQRTTTEIGFGNTPGRPNSRRQEDAGTV |
|
NCBI Accession
|
YP_009104362.1
|
|
Location
|
290-1054 |
|
Protein Name
|
capsid protein |
|
Coding Region
|
ATGCCGGGACCGTTTAGTGGTAAAACCTATTCAAGGAAGAAGGGTAAATATGCCAAGGCCTACAAAGCTCTTGGTGTGAAAAATCAAAAAGAACTGGAAGAGCTGGTAAATGCGCCTGCTTGTCCAGTTACTCCTAGACCTGCCTTACAGGTTGCTGAATATTTTTGGACTACGGACAAAAATGGAATGATATTCCGCTCTGGTGGTGGTACTGCTCATTTCACTATGTATCCTCAGGGTTCAAATGAGAATTGCAGACATTCCAACCAGACTAATACCTACAAGATGGCTATTAAGTGCTGGGTTGCATTGGATCCTACGTTCTACAAGAAGGTGGCATGTGTTCCTGTGCATTTCTGGTTGGTATACGACAAAGATCCGGGTAATACACTGCCTGGATGCTCTACCATTTTTGATACTCTGTATCAAGATTACCCGGGTACATGGACTGTATCCCGGAACGTTAGTCGTCGCTTTGTAGTTAAAAAACATTGGCACATTATCTTGGCCTCTAATGGAACGAATCCAACACAAGATCAAGACCCTGCTAAGTATGCTGGACCTGGACCTGTGTTTCAATGGAAACACATGAACAAGTTTTTTAAAAGACTTGGCGTAAGGACTGATTGGAAGAACTCAGCTACAGGTGAAGTAGCTGACATTAAGAGTGGAGCATTGTACTTAGTTTGTGCACCAAGTGGTGGTGCTGTTGTAAGGGTTGGGGGTAGATTCAGAATGTACTTCAAATCCGTTGGAAATCAATAA |
|
Protein Sequence
|
MPGPFSGKTYSRKKGKYAKAYKALGVKNQKELEELVNAPACPVTPRPALQVAEYFWTTDKNGMIFRSGGGTAHFTMYPQGSNENCRHSNQTNTYKMAIKCWVALDPTFYKKVACVPVHFWLVYDKDPGNTLPGCSTIFDTLYQDYPGTWTVSRNVSRRFVVKKHWHIILASNGTNPTQDQDPAKYAGPGPVFQWKHMNKFFKRLGVRTDWKNSATGEVADIKSGALYLVCAPSGGAVVRVGGRFRMYFKSVGNQ |
|
NCBI Accession
|
YP_009104363.1
|
|
Location
|
1196-1609,1699-2295 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGCCAAGACGTACAAACAACAACTCTTTCAGACTTCAAACAAAATATGTTTTCCTTACTTATCCTCATAGCTCCTCTACTGCAGAAAATCTCAGAGATTTTCTCTGGTCCAAACTCACATCTCTTGCTATTTTTTTCATTGCTATTGCTACTGAACTTCACCAAGATGGTTCTCCCCATCTTCACTGTCTTATACAGCTTGACAAAAGATGTGATATACGGGACCCTTCTTTTTTTGATTTTGAGGGAAACCATCCAAATATCCAACCTGCTAAGAACTCAAAGCAGGTTCTTGAATACATATCCAAGGACGGGAACATCATCACCAGAGGTGACTTCAGAAACCATCGAGTCAGCCCAACCAAATCTGATGAACGATGGAGAACTATCATACAGACTGCAACATCTAAAGAGGAGTATCTGGAAATGATTAAACAAGAATTCCCCCATGAATGGGCAACTAAGCTTCACTGGCTTGAATACAGTGCAAGCAAACTCTTTCCAGATATAGAACCACCCTATCAAAGCCCATTTCCAGATGAATTTCTTCACTGCCATGAAGAAATTACTGAGTGGCTTAACAGAGACCTCTATGTTGAACCCGAACAACTCCAACTCCGGCGAAGATCCCTCTACATCTGCGGACCAAGTCGTACCGGAAAGACCAGTTGGGCCAGAAGTCTGGGAAGACACAACTACTTCAACGGAGGGGTCGATTTCACTACATACGACGTCAACGCAACATACAACGTCATCGACGACATCCCCTTCAAGTTCTGCCCCAACTGGAAGCAGTTAGTAGGGTCACAGAAGGATTTCACAGTTAACCCTAAATACGGCAAAAAGAAGAGGGTTAAAGGAGGAATCCCATGTATTATAATAGTTAATAATGATGAGGACTGGCTTGAGAGTATGTCAGATTCTCAGAGAGAATATTTTTATTTAAATTGTAAAATCCATATAATGAGTGAAGGAGAGACTTTTATTGCTTCGGCAGCGTCGAGTCACTAA |
|
Protein Sequence
|
MPRRTNNNSFRLQTKYVFLTYPHSSSTAENLRDFLWSKLTSLAIFFIAIATELHQDGSPHLHCLIQLDKRCDIRDPSFFDFEGNHPNIQPAKNSKQVLEYISKDGNIITRGDFRNHRVSPTKSDERWRTIIQTATSKEEYLEMIKQEFPHEWATKLHWLEYSASKLFPDIEPPYQSPFPDEFLHCHEEITEWLNRDLYVEPEQLQLRRRSLYICGPSRTGKTSWARSLGRHNYFNGGVDFTTYDVNATYNVIDDIPFKFCPNWKQLVGSQKDFTVNPKYGKKKRVKGGIPCIIIVNNDEDWLESMSDSQREYFYLNCKIHIMSEGETFIASAASSH |
|
NCBI Accession
|
YP_009104364.1
|
|
Location
|
1408-2295 |
|
Protein Name
|
RepA |
|
Coding Region
|
ATGCCAAGACGTACAAACAACAACTCTTTCAGACTTCAAACAAAATATGTTTTCCTTACTTATCCTCATAGCTCCTCTACTGCAGAAAATCTCAGAGATTTTCTCTGGTCCAAACTCACATCTCTTGCTATTTTTTTCATTGCTATTGCTACTGAACTTCACCAAGATGGTTCTCCCCATCTTCACTGTCTTATACAGCTTGACAAAAGATGTGATATACGGGACCCTTCTTTTTTTGATTTTGAGGGAAACCATCCAAATATCCAACCTGCTAAGAACTCAAAGCAGGTTCTTGAATACATATCCAAGGACGGGAACATCATCACCAGAGGTGACTTCAGAAACCATCGAGTCAGCCCAACCAAATCTGATGAACGATGGAGAACTATCATACAGACTGCAACATCTAAAGAGGAGTATCTGGAAATGATTAAACAAGAATTCCCCCATGAATGGGCAACTAAGCTTCACTGGCTTGAATACAGTGCAAGCAAACTCTTTCCAGATATAGAACCACCCTATCAAAGCCCATTTCCAGATGAATTTCTTCACTGCCATGAAGAAATTACTGAGTGGCTTAACAGAGACCTCTATGTTGTAAGTGTAGATTCTTATCAACTACTCCATCCACATCTTTCTTTAGAAACTGCAACTGAAGACTTGATTTGGATGGACGATTATACCAGGAACCCGAACAACTCCAACTCCGGCGAAGATCCCTCTACATCTGCGGACCAAGTCGTACCGGAAAGACCAGTTGGGCCAGAAGTCTGGGAAGACACAACTACTTCAACGGAGGGGTCGATTTCACTACATACGACGTCAACGCAACATACAACGTCATCGACGACATCCCCTTCAAGTTCTGCCCCAACTGGAAGCAGTTAG |
|
Protein Sequence
|
MPRRTNNNSFRLQTKYVFLTYPHSSSTAENLRDFLWSKLTSLAIFFIAIATELHQDGSPHLHCLIQLDKRCDIRDPSFFDFEGNHPNIQPAKNSKQVLEYISKDGNIITRGDFRNHRVSPTKSDERWRTIIQTATSKEEYLEMIKQEFPHEWATKLHWLEYSASKLFPDIEPPYQSPFPDEFLHCHEEITEWLNRDLYVVSVDSYQLLHPHLSLETATEDLIWMDDYTRNPNNSNSGEDPSTSADQVVPERPVGPEVWEDTTTSTEGSISLHTTSTQHTTSSTTSPSSSAPTGSS |