Chickpea chlorotic dwarf virus
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_000880315.1 |
| Isolate |
Pakistan:Layyah |
| Release date |
2015/2/22 |
| Submitter |
Nahid,N., Amin,I., Mansoor,S., Rybicki,E.P., van der Walt,E., Briddon,R.W. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGCGTGGCCCACCTTATCGCGAGCACTTTAGTGCGAGCGGTTCAGATTTAAAGTGGAAAAGTTCCCGCCCACTAGGGTTTGCTTTAGCTTTTGCTTTATAAAAGGCGCACTAATGGGTAGACCGTAGAATGGAACGTATTCTGTATCAGGTATTTCCTACGGATACGAATTATTCGTACGATCCTCCTCCTGTGAATACGAATTCCCAGGGATCCTCTCAAACGGATTTCGGGAAGGTGGTTATCGCCTTGGTGGTTATTCTGGTTAGTGTTGGTGTGTTCTATCTGGCTTATAGTCTGTTCTTGAAGGATTGTATCCTTCTGTTCAAGGCGAAGAAGCAGAGGACCACCACTGAAATCGGGTTTGGTCAAACCCCGGCTAGAAACCAGGATCATCCTCAACCTTAGGCGGGGTGCATCATGTCAACTGTGACGTGGGGAAACAAGAGGAAGCGCAGCGATAGGTCCTCGAAGGCGAAGAGTAAGTCCTCTGGGTCTTATGTTCCCAGATCTGTGTCTTCCAGGAGGGAATCGTTGCAGGTGGCTACCTTTTCCTGGACCAGTTCTGGTTCGGGTATCAAGTTCTCTACTGGTGGTGCTGCCTACCTTGTGAGTAATTTTCCACAGGGTGCCAACGATAACTGTCGTCACACCAACAAGACCGTGCTATACAAATTCATGGCCAAGAATACGGTGTACTTGGACCCTAGTCATTATCCTAAGGTCTTTAAGTGCCCGTTTACTTTTTGGCTGGTGTACGACAAGGCTCCTGGTGCAAGTGTCCCTAGTACTGGGGACATATTTGAAGGCCCCTCTCTATTCCCTGCTAATCCCTGGACGTGGACTGTGTCTAGGGCTGCTTGCCATCGATTTGTTGTTAAAAAAACGTGGTCAGTGGTGGTGGAGAGCAATGGTGTTGATCCAGGAAAGGCCCAATCCAGTTCCTATTATGGGCCTGGACCTTGTAATCAGATTAAGTCCTGCAATAAGTTCTTTAAGAGGCTGGGTGTGTCAACGGAGTGGAAAAATAGTTCCACGGGGGATGTTGGTGATATAAAGGAAGGAGCCCTTTACATTGTAGGTGCTCCTTCCCAGAAGTCTGATGTATATGTAAATGGTTATTTCCGAGTGTACTTCAAGTCCGTTGGCAATCAATAAAAATTTATTATTATGAATATTTTACATTGTGCAAGTAGGTAGAAATTCAATATGTTACATTACACACGAAATAAGCAAAAAAACACACCTAAAACAAAAGTACACTACCCACGATAACTTATAACTATAGCTTAACCCCGTATGAGGAGAGGCACGTTCAGTGACTCGACGATTCCCGGGCAAAAAAAGTTTCGCCGTCATCCATATAATGGATCTCACAATTGTCTGTAAAGTATTCTTTCTGATGCTCAGACATAGCAGGGATCCAGTCCTCATCTCTATTTGTTAAAATTATGGAAGGGACACCACCTTTTATTTTCTTCTTTTTTCCATACTTAGGGTTGACAGTGAAGTCGAACTGGCAACCTATTAATTGCTTCCACAATGGGACGAACTTGAAGGGGATGTCGTCAATGACATTGTAGGTCGCGTGTTCGTCGTACGTGGTGAAGTCGATGGTCCCATTCCAGTAGTTGTGTCGTCCGAGGCTTCTAGCCCAGGTGGTCTTTCCGGTACGAGTTGGTCCGCAGATGTAGAGGCTGGGGACTCTAGCTCCAGTCCTTCTCGGTTCCTGGTTAGATCGGCCATCCATTCAAGGTCAGATTGAGCTTGCTGATATGAAACTGGATGGACAAGAGTGTAGGCGTCGATGCTTACTTGGTACAGGTGTGTATCCCTCCATTGTGCTAGATCCTCGTGGCAGCGGAGATCTGACTCAGTGAACGGCGACACATATGCTTCAGGTTGTGGAGGGAATAGCTTGTTTGCGGAGTATTCAAGCCATTGAAGCTTGGTAGTCCATTCATGGGGGAACTCCTCCTTGATCATGTCAAGATATTCCTCCTTAGACGTTGCAGTCTGGATAATAGTTCGCCATCGTGCGTCAGATTTGCGAGGAGAGACTTTATGATCTCTGAAATCTCCTCTTGTTTTAATATCTCCGTCCTTGGAAATGTATTCAAGGACTTGTTTAGAGTTTCTAGCTGGTTGGATATTAGGGTGATTTCCTTCAAAATCGAAAAAAGAAGGATCCCTAATCCAAGGTTTTTTATCAAGCTGGACAAGAGCATGATAGTGGGTAGTGCCATCTTGATGAAGCTCAGTAGCAACACCAAGGAAGAAAATAAGAAAAGGTGTGAGTTTCTCCCAGAGAAACTCGAATAAATCATCTCTTGGAGATGAGCATTTAGGGTAGGTAAGGAAAACATATTTTGATTGGAATCTGAAGTTCTTGTTTGCAGAAGGCATATTTGTTGTGACTCCAAGGGTTGGCTTGAAACTCTATCTTATAACCGGCGTGGAGACTTGGAGACAAGGGTATTTTGGTCATTTAGGCTGGGTAGTGGAATAATGACATGGCAGTGACTTAAAGACGAAGTCTTTGCGAAAGCGAATAAGGGGGGAGCCACGCCGAAATTAATATT
Gene Information
|
NCBI Accession
|
YP_002014710.1
|
|
Location
|
132-410 |
|
Gene Name
|
V1 |
|
Protein Name
|
movement protein |
|
Coding Region
|
ATGGAACGTATTCTGTATCAGGTATTTCCTACGGATACGAATTATTCGTACGATCCTCCTCCTGTGAATACGAATTCCCAGGGATCCTCTCAAACGGATTTCGGGAAGGTGGTTATCGCCTTGGTGGTTATTCTGGTTAGTGTTGGTGTGTTCTATCTGGCTTATAGTCTGTTCTTGAAGGATTGTATCCTTCTGTTCAAGGCGAAGAAGCAGAGGACCACCACTGAAATCGGGTTTGGTCAAACCCCGGCTAGAAACCAGGATCATCCTCAACCTTAG |
|
Protein Sequence
|
MERILYQVFPTDTNYSYDPPPVNTNSQGSSQTDFGKVVIALVVILVSVGVFYLAYSLFLKDCILLFKAKKQRTTTEIGFGQTPARNQDHPQP |
|
NCBI Accession
|
YP_002014711.1
|
|
Location
|
423-1160 |
|
Gene Name
|
V2 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCAACTGTGACGTGGGGAAACAAGAGGAAGCGCAGCGATAGGTCCTCGAAGGCGAAGAGTAAGTCCTCTGGGTCTTATGTTCCCAGATCTGTGTCTTCCAGGAGGGAATCGTTGCAGGTGGCTACCTTTTCCTGGACCAGTTCTGGTTCGGGTATCAAGTTCTCTACTGGTGGTGCTGCCTACCTTGTGAGTAATTTTCCACAGGGTGCCAACGATAACTGTCGTCACACCAACAAGACCGTGCTATACAAATTCATGGCCAAGAATACGGTGTACTTGGACCCTAGTCATTATCCTAAGGTCTTTAAGTGCCCGTTTACTTTTTGGCTGGTGTACGACAAGGCTCCTGGTGCAAGTGTCCCTAGTACTGGGGACATATTTGAAGGCCCCTCTCTATTCCCTGCTAATCCCTGGACGTGGACTGTGTCTAGGGCTGCTTGCCATCGATTTGTTGTTAAAAAAACGTGGTCAGTGGTGGTGGAGAGCAATGGTGTTGATCCAGGAAAGGCCCAATCCAGTTCCTATTATGGGCCTGGACCTTGTAATCAGATTAAGTCCTGCAATAAGTTCTTTAAGAGGCTGGGTGTGTCAACGGAGTGGAAAAATAGTTCCACGGGGGATGTTGGTGATATAAAGGAAGGAGCCCTTTACATTGTAGGTGCTCCTTCCCAGAAGTCTGATGTATATGTAAATGGTTATTTCCGAGTGTACTTCAAGTCCGTTGGCAATCAATAA |
|
Protein Sequence
|
MSTVTWGNKRKRSDRSSKAKSKSSGSYVPRSVSSRRESLQVATFSWTSSGSGIKFSTGGAAYLVSNFPQGANDNCRHTNKTVLYKFMAKNTVYLDPSHYPKVFKCPFTFWLVYDKAPGASVPSTGDIFEGPSLFPANPWTWTVSRAACHRFVVKKTWSVVVESNGVDPGKAQSSSYYGPGPCNQIKSCNKFFKRLGVSTEWKNSSTGDVGDIKEGALYIVGAPSQKSDVYVNGYFRVYFKSVGNQ |
|
NCBI Accession
|
YP_002014712.1
|
|
Location
|
1318-1731,1818-2408 |
|
Gene Name
|
C1:C2 |
|
Protein Name
|
Rep A protein |
|
Coding Region
|
ATGCCTTCTGCAAACAAGAACTTCAGATTCCAATCAAAATATGTTTTCCTTACCTACCCTAAATGCTCATCTCCAAGAGATGATTTATTCGAGTTTCTCTGGGAGAAACTCACACCTTTTCTTATTTTCTTCCTTGGTGTTGCTACTGAGCTTCATCAAGATGGCACTACCCACTATCATGCTCTTGTCCAGCTTGATAAAAAACCTTGGATTAGGGATCCTTCTTTTTTCGATTTTGAAGGAAATCACCCTAATATCCAACCAGCTAGAAACTCTAAACAAGTCCTTGAATACATTTCCAAGGACGGAGATATTAAAACAAGAGGAGATTTCAGAGATCATAAAGTCTCTCCTCGCAAATCTGACGCACGATGGCGAACTATTATCCAGACTGCAACGTCTAAGGAGGAATATCTTGACATGATCAAGGAGGAGTTCCCCCATGAATGGACTACCAAGCTTCAATGGCTTGAATACTCCGCAAACAAGCTATTCCCTCCACAACCTGAAGCATATGTGTCGCCGTTCACTGAGTCAGATCTCCGCTGCCACGAGGATCTAGCACAATGGAGGGATACACACCTGTACCAAGAACCGAGAAGGACTGGAGCTAGAGTCCCCAGCCTCTACATCTGCGGACCAACTCGTACCGGAAAGACCACCTGGGCTAGAAGCCTCGGACGACACAACTACTGGAATGGGACCATCGACTTCACCACGTACGACGAACACGCGACCTACAATGTCATTGACGACATCCCCTTCAAGTTCGTCCCATTGTGGAAGCAATTAATAGGTTGCCAGTTCGACTTCACTGTCAACCCTAAGTATGGAAAAAAGAAGAAAATAAAAGGTGGTGTCCCTTCCATAATTTTAACAAATAGAGATGAGGACTGGATCCCTGCTATGTCTGAGCATCAGAAAGAATACTTTACAGACAATTGTGAGATCCATTATATGGATGACGGCGAAACTTTTTTTGCCCGGGAATCGTCGAGTCACTGA |
|
Protein Sequence
|
MPSANKNFRFQSKYVFLTYPKCSSPRDDLFEFLWEKLTPFLIFFLGVATELHQDGTTHYHALVQLDKKPWIRDPSFFDFEGNHPNIQPARNSKQVLEYISKDGDIKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLDMIKEEFPHEWTTKLQWLEYSANKLFPPQPEAYVSPFTESDLRCHEDLAQWRDTHLYQEPRRTGARVPSLYICGPTRTGKTTWARSLGRHNYWNGTIDFTTYDEHATYNVIDDIPFKFVPLWKQLIGCQFDFTVNPKYGKKKKIKGGVPSIILTNRDEDWIPAMSEHQKEYFTDNCEIHYMDDGETFFARESSSH |
|
NCBI Accession
|
YP_002014713.1
|
|
Location
|
1530-2408 |
|
Gene Name
|
C1 |
|
Protein Name
|
Rep protein |
|
Coding Region
|
ATGCCTTCTGCAAACAAGAACTTCAGATTCCAATCAAAATATGTTTTCCTTACCTACCCTAAATGCTCATCTCCAAGAGATGATTTATTCGAGTTTCTCTGGGAGAAACTCACACCTTTTCTTATTTTCTTCCTTGGTGTTGCTACTGAGCTTCATCAAGATGGCACTACCCACTATCATGCTCTTGTCCAGCTTGATAAAAAACCTTGGATTAGGGATCCTTCTTTTTTCGATTTTGAAGGAAATCACCCTAATATCCAACCAGCTAGAAACTCTAAACAAGTCCTTGAATACATTTCCAAGGACGGAGATATTAAAACAAGAGGAGATTTCAGAGATCATAAAGTCTCTCCTCGCAAATCTGACGCACGATGGCGAACTATTATCCAGACTGCAACGTCTAAGGAGGAATATCTTGACATGATCAAGGAGGAGTTCCCCCATGAATGGACTACCAAGCTTCAATGGCTTGAATACTCCGCAAACAAGCTATTCCCTCCACAACCTGAAGCATATGTGTCGCCGTTCACTGAGTCAGATCTCCGCTGCCACGAGGATCTAGCACAATGGAGGGATACACACCTGTACCAAGTAAGCATCGACGCCTACACTCTTGTCCATCCAGTTTCATATCAGCAAGCTCAATCTGACCTTGAATGGATGGCCGATCTAACCAGGAACCGAGAAGGACTGGAGCTAGAGTCCCCAGCCTCTACATCTGCGGACCAACTCGTACCGGAAAGACCACCTGGGCTAGAAGCCTCGGACGACACAACTACTGGAATGGGACCATCGACTTCACCACGTACGACGAACACGCGACCTACAATGTCATTGACGACATCCCCTTCAAGTTCGTCCCATTGTGGAAGCAATTAA |
|
Protein Sequence
|
MPSANKNFRFQSKYVFLTYPKCSSPRDDLFEFLWEKLTPFLIFFLGVATELHQDGTTHYHALVQLDKKPWIRDPSFFDFEGNHPNIQPARNSKQVLEYISKDGDIKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLDMIKEEFPHEWTTKLQWLEYSANKLFPPQPEAYVSPFTESDLRCHEDLAQWRDTHLYQVSIDAYTLVHPVSYQQAQSDLEWMADLTRNREGLELESPASTSADQLVPERPPGLEASDDTTTGMGPSTSPRTTNTRPTMSLTTSPSSSSHCGSN |