Chickpea chlorotic dwarf virus


Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000880315.1
Isolate Pakistan:Layyah
Release date 2015/2/22
Submitter Nahid,N., Amin,I., Mansoor,S., Rybicki,E.P., van der Walt,E., Briddon,R.W.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_011058
ACCGGCGTGGCCCACCTTATCGCGAGCACTTTAGTGCGAGCGGTTCAGATTTAAAGTGGAAAAGTTCCCGCCCACTAGGGTTTGCTTTAGCTTTTGCTTTATAAAAGGCGCACTAATGGGTAGACCGTAGAATGGAACGTATTCTGTATCAGGTATTTCCTACGGATACGAATTATTCGTACGATCCTCCTCCTGTGAATACGAATTCCCAGGGATCCTCTCAAACGGATTTCGGGAAGGTGGTTATCGCCTTGGTGGTTATTCTGGTTAGTGTTGGTGTGTTCTATCTGGCTTATAGTCTGTTCTTGAAGGATTGTATCCTTCTGTTCAAGGCGAAGAAGCAGAGGACCACCACTGAAATCGGGTTTGGTCAAACCCCGGCTAGAAACCAGGATCATCCTCAACCTTAGGCGGGGTGCATCATGTCAACTGTGACGTGGGGAAACAAGAGGAAGCGCAGCGATAGGTCCTCGAAGGCGAAGAGTAAGTCCTCTGGGTCTTATGTTCCCAGATCTGTGTCTTCCAGGAGGGAATCGTTGCAGGTGGCTACCTTTTCCTGGACCAGTTCTGGTTCGGGTATCAAGTTCTCTACTGGTGGTGCTGCCTACCTTGTGAGTAATTTTCCACAGGGTGCCAACGATAACTGTCGTCACACCAACAAGACCGTGCTATACAAATTCATGGCCAAGAATACGGTGTACTTGGACCCTAGTCATTATCCTAAGGTCTTTAAGTGCCCGTTTACTTTTTGGCTGGTGTACGACAAGGCTCCTGGTGCAAGTGTCCCTAGTACTGGGGACATATTTGAAGGCCCCTCTCTATTCCCTGCTAATCCCTGGACGTGGACTGTGTCTAGGGCTGCTTGCCATCGATTTGTTGTTAAAAAAACGTGGTCAGTGGTGGTGGAGAGCAATGGTGTTGATCCAGGAAAGGCCCAATCCAGTTCCTATTATGGGCCTGGACCTTGTAATCAGATTAAGTCCTGCAATAAGTTCTTTAAGAGGCTGGGTGTGTCAACGGAGTGGAAAAATAGTTCCACGGGGGATGTTGGTGATATAAAGGAAGGAGCCCTTTACATTGTAGGTGCTCCTTCCCAGAAGTCTGATGTATATGTAAATGGTTATTTCCGAGTGTACTTCAAGTCCGTTGGCAATCAATAAAAATTTATTATTATGAATATTTTACATTGTGCAAGTAGGTAGAAATTCAATATGTTACATTACACACGAAATAAGCAAAAAAACACACCTAAAACAAAAGTACACTACCCACGATAACTTATAACTATAGCTTAACCCCGTATGAGGAGAGGCACGTTCAGTGACTCGACGATTCCCGGGCAAAAAAAGTTTCGCCGTCATCCATATAATGGATCTCACAATTGTCTGTAAAGTATTCTTTCTGATGCTCAGACATAGCAGGGATCCAGTCCTCATCTCTATTTGTTAAAATTATGGAAGGGACACCACCTTTTATTTTCTTCTTTTTTCCATACTTAGGGTTGACAGTGAAGTCGAACTGGCAACCTATTAATTGCTTCCACAATGGGACGAACTTGAAGGGGATGTCGTCAATGACATTGTAGGTCGCGTGTTCGTCGTACGTGGTGAAGTCGATGGTCCCATTCCAGTAGTTGTGTCGTCCGAGGCTTCTAGCCCAGGTGGTCTTTCCGGTACGAGTTGGTCCGCAGATGTAGAGGCTGGGGACTCTAGCTCCAGTCCTTCTCGGTTCCTGGTTAGATCGGCCATCCATTCAAGGTCAGATTGAGCTTGCTGATATGAAACTGGATGGACAAGAGTGTAGGCGTCGATGCTTACTTGGTACAGGTGTGTATCCCTCCATTGTGCTAGATCCTCGTGGCAGCGGAGATCTGACTCAGTGAACGGCGACACATATGCTTCAGGTTGTGGAGGGAATAGCTTGTTTGCGGAGTATTCAAGCCATTGAAGCTTGGTAGTCCATTCATGGGGGAACTCCTCCTTGATCATGTCAAGATATTCCTCCTTAGACGTTGCAGTCTGGATAATAGTTCGCCATCGTGCGTCAGATTTGCGAGGAGAGACTTTATGATCTCTGAAATCTCCTCTTGTTTTAATATCTCCGTCCTTGGAAATGTATTCAAGGACTTGTTTAGAGTTTCTAGCTGGTTGGATATTAGGGTGATTTCCTTCAAAATCGAAAAAAGAAGGATCCCTAATCCAAGGTTTTTTATCAAGCTGGACAAGAGCATGATAGTGGGTAGTGCCATCTTGATGAAGCTCAGTAGCAACACCAAGGAAGAAAATAAGAAAAGGTGTGAGTTTCTCCCAGAGAAACTCGAATAAATCATCTCTTGGAGATGAGCATTTAGGGTAGGTAAGGAAAACATATTTTGATTGGAATCTGAAGTTCTTGTTTGCAGAAGGCATATTTGTTGTGACTCCAAGGGTTGGCTTGAAACTCTATCTTATAACCGGCGTGGAGACTTGGAGACAAGGGTATTTTGGTCATTTAGGCTGGGTAGTGGAATAATGACATGGCAGTGACTTAAAGACGAAGTCTTTGCGAAAGCGAATAAGGGGGGAGCCACGCCGAAATTAATATT

Gene Information

NCBI Accession YP_002014710.1
Location 132-410
Gene Name V1
Protein Name movement protein
Coding Region ATGGAACGTATTCTGTATCAGGTATTTCCTACGGATACGAATTATTCGTACGATCCTCCTCCTGTGAATACGAATTCCCAGGGATCCTCTCAAACGGATTTCGGGAAGGTGGTTATCGCCTTGGTGGTTATTCTGGTTAGTGTTGGTGTGTTCTATCTGGCTTATAGTCTGTTCTTGAAGGATTGTATCCTTCTGTTCAAGGCGAAGAAGCAGAGGACCACCACTGAAATCGGGTTTGGTCAAACCCCGGCTAGAAACCAGGATCATCCTCAACCTTAG
Protein Sequence MERILYQVFPTDTNYSYDPPPVNTNSQGSSQTDFGKVVIALVVILVSVGVFYLAYSLFLKDCILLFKAKKQRTTTEIGFGQTPARNQDHPQP

NCBI Accession YP_002014711.1
Location 423-1160
Gene Name V2
Protein Name coat protein
Coding Region ATGTCAACTGTGACGTGGGGAAACAAGAGGAAGCGCAGCGATAGGTCCTCGAAGGCGAAGAGTAAGTCCTCTGGGTCTTATGTTCCCAGATCTGTGTCTTCCAGGAGGGAATCGTTGCAGGTGGCTACCTTTTCCTGGACCAGTTCTGGTTCGGGTATCAAGTTCTCTACTGGTGGTGCTGCCTACCTTGTGAGTAATTTTCCACAGGGTGCCAACGATAACTGTCGTCACACCAACAAGACCGTGCTATACAAATTCATGGCCAAGAATACGGTGTACTTGGACCCTAGTCATTATCCTAAGGTCTTTAAGTGCCCGTTTACTTTTTGGCTGGTGTACGACAAGGCTCCTGGTGCAAGTGTCCCTAGTACTGGGGACATATTTGAAGGCCCCTCTCTATTCCCTGCTAATCCCTGGACGTGGACTGTGTCTAGGGCTGCTTGCCATCGATTTGTTGTTAAAAAAACGTGGTCAGTGGTGGTGGAGAGCAATGGTGTTGATCCAGGAAAGGCCCAATCCAGTTCCTATTATGGGCCTGGACCTTGTAATCAGATTAAGTCCTGCAATAAGTTCTTTAAGAGGCTGGGTGTGTCAACGGAGTGGAAAAATAGTTCCACGGGGGATGTTGGTGATATAAAGGAAGGAGCCCTTTACATTGTAGGTGCTCCTTCCCAGAAGTCTGATGTATATGTAAATGGTTATTTCCGAGTGTACTTCAAGTCCGTTGGCAATCAATAA
Protein Sequence MSTVTWGNKRKRSDRSSKAKSKSSGSYVPRSVSSRRESLQVATFSWTSSGSGIKFSTGGAAYLVSNFPQGANDNCRHTNKTVLYKFMAKNTVYLDPSHYPKVFKCPFTFWLVYDKAPGASVPSTGDIFEGPSLFPANPWTWTVSRAACHRFVVKKTWSVVVESNGVDPGKAQSSSYYGPGPCNQIKSCNKFFKRLGVSTEWKNSSTGDVGDIKEGALYIVGAPSQKSDVYVNGYFRVYFKSVGNQ

NCBI Accession YP_002014712.1
Location 1318-1731,1818-2408
Gene Name C1:C2
Protein Name Rep A protein
Coding Region ATGCCTTCTGCAAACAAGAACTTCAGATTCCAATCAAAATATGTTTTCCTTACCTACCCTAAATGCTCATCTCCAAGAGATGATTTATTCGAGTTTCTCTGGGAGAAACTCACACCTTTTCTTATTTTCTTCCTTGGTGTTGCTACTGAGCTTCATCAAGATGGCACTACCCACTATCATGCTCTTGTCCAGCTTGATAAAAAACCTTGGATTAGGGATCCTTCTTTTTTCGATTTTGAAGGAAATCACCCTAATATCCAACCAGCTAGAAACTCTAAACAAGTCCTTGAATACATTTCCAAGGACGGAGATATTAAAACAAGAGGAGATTTCAGAGATCATAAAGTCTCTCCTCGCAAATCTGACGCACGATGGCGAACTATTATCCAGACTGCAACGTCTAAGGAGGAATATCTTGACATGATCAAGGAGGAGTTCCCCCATGAATGGACTACCAAGCTTCAATGGCTTGAATACTCCGCAAACAAGCTATTCCCTCCACAACCTGAAGCATATGTGTCGCCGTTCACTGAGTCAGATCTCCGCTGCCACGAGGATCTAGCACAATGGAGGGATACACACCTGTACCAAGAACCGAGAAGGACTGGAGCTAGAGTCCCCAGCCTCTACATCTGCGGACCAACTCGTACCGGAAAGACCACCTGGGCTAGAAGCCTCGGACGACACAACTACTGGAATGGGACCATCGACTTCACCACGTACGACGAACACGCGACCTACAATGTCATTGACGACATCCCCTTCAAGTTCGTCCCATTGTGGAAGCAATTAATAGGTTGCCAGTTCGACTTCACTGTCAACCCTAAGTATGGAAAAAAGAAGAAAATAAAAGGTGGTGTCCCTTCCATAATTTTAACAAATAGAGATGAGGACTGGATCCCTGCTATGTCTGAGCATCAGAAAGAATACTTTACAGACAATTGTGAGATCCATTATATGGATGACGGCGAAACTTTTTTTGCCCGGGAATCGTCGAGTCACTGA
Protein Sequence MPSANKNFRFQSKYVFLTYPKCSSPRDDLFEFLWEKLTPFLIFFLGVATELHQDGTTHYHALVQLDKKPWIRDPSFFDFEGNHPNIQPARNSKQVLEYISKDGDIKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLDMIKEEFPHEWTTKLQWLEYSANKLFPPQPEAYVSPFTESDLRCHEDLAQWRDTHLYQEPRRTGARVPSLYICGPTRTGKTTWARSLGRHNYWNGTIDFTTYDEHATYNVIDDIPFKFVPLWKQLIGCQFDFTVNPKYGKKKKIKGGVPSIILTNRDEDWIPAMSEHQKEYFTDNCEIHYMDDGETFFARESSSH

NCBI Accession YP_002014713.1
Location 1530-2408
Gene Name C1
Protein Name Rep protein
Coding Region ATGCCTTCTGCAAACAAGAACTTCAGATTCCAATCAAAATATGTTTTCCTTACCTACCCTAAATGCTCATCTCCAAGAGATGATTTATTCGAGTTTCTCTGGGAGAAACTCACACCTTTTCTTATTTTCTTCCTTGGTGTTGCTACTGAGCTTCATCAAGATGGCACTACCCACTATCATGCTCTTGTCCAGCTTGATAAAAAACCTTGGATTAGGGATCCTTCTTTTTTCGATTTTGAAGGAAATCACCCTAATATCCAACCAGCTAGAAACTCTAAACAAGTCCTTGAATACATTTCCAAGGACGGAGATATTAAAACAAGAGGAGATTTCAGAGATCATAAAGTCTCTCCTCGCAAATCTGACGCACGATGGCGAACTATTATCCAGACTGCAACGTCTAAGGAGGAATATCTTGACATGATCAAGGAGGAGTTCCCCCATGAATGGACTACCAAGCTTCAATGGCTTGAATACTCCGCAAACAAGCTATTCCCTCCACAACCTGAAGCATATGTGTCGCCGTTCACTGAGTCAGATCTCCGCTGCCACGAGGATCTAGCACAATGGAGGGATACACACCTGTACCAAGTAAGCATCGACGCCTACACTCTTGTCCATCCAGTTTCATATCAGCAAGCTCAATCTGACCTTGAATGGATGGCCGATCTAACCAGGAACCGAGAAGGACTGGAGCTAGAGTCCCCAGCCTCTACATCTGCGGACCAACTCGTACCGGAAAGACCACCTGGGCTAGAAGCCTCGGACGACACAACTACTGGAATGGGACCATCGACTTCACCACGTACGACGAACACGCGACCTACAATGTCATTGACGACATCCCCTTCAAGTTCGTCCCATTGTGGAAGCAATTAA
Protein Sequence MPSANKNFRFQSKYVFLTYPKCSSPRDDLFEFLWEKLTPFLIFFLGVATELHQDGTTHYHALVQLDKKPWIRDPSFFDFEGNHPNIQPARNSKQVLEYISKDGDIKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLDMIKEEFPHEWTTKLQWLEYSANKLFPPQPEAYVSPFTESDLRCHEDLAQWRDTHLYQVSIDAYTLVHPVSYQQAQSDLEWMADLTRNREGLELESPASTSADQLVPERPPGLEASDDTTTGMGPSTSPRTTNTRPTMSLTTSPSSSSHCGSN

References More References in PubMed

1

Chickpea chlorotic dwarf virus: An Emerging Monopartite Dicot Infecting Mastrevirus.

Kanakala S, et al.  Viruses. 2018 Dec 21;11(1):5. doi: 10.3390/v11010005.

PMID: 30577666

2

Pest categorisation of chickpea chlorotic dwarf virus.

EFSA Panel on Plant Health (PLH), et al.  EFSA J. 2022 Nov 15;20(11):e07625. doi: 10.2903/j.efsa.2022.7625. eCollection 2022 Nov.

PMID: 36398295

3

Identification of New Chickpea Virus and Control of Chickpea Virus Disease.

Cun Z.  Evid Based Complement Alternat Med. 2022 May 28;2022:6465505. doi: 10.1155/2022/6465505. eCollection 2022.

PMID: 35668786

4

Molecular characterization of Chickpea chlorotic dwarf virus strain D in Chickpea (Cicer arietinum) from District Dera Ismail Khan Khyber Pakhtunkhwa, Pakistan.

Rashid K, et al.  Cell Mol Biol (Noisy-le-grand). 2019 Sep 30;65(7):34-37.

PMID: 31880515

5

Molecular characterization of chickpea chlorotic dwarf virus and peanut witches' broom phytoplasma associated with chickpea stunt disease and identification of new host crops and leafhopper vectors in India.

Reddy MG, et al.  3 Biotech. 2021 Mar;11(3):112. doi: 10.1007/s13205-020-02613-7. Epub 2021 Feb 3.

PMID: 33598378

6

First Report of Chickpea Chlorotic Dwarf Virus Infecting Spring Chickpea in Syria.

Kumari SG, et al.  Plant Dis. 2004 Apr;88(4):424. doi: 10.1094/PDIS.2004.88.4.424C.

PMID: 30812628

7

Invasion of previously unreported dicot plant hosts by chickpea chlorotic dwarf virus in Pakistan.

Hameed U, et al.  Virusdisease. 2019 Mar;30(1):95-100. doi: 10.1007/s13337-018-0454-4. Epub 2018 May 25.

PMID: 31143836

8

Duplex PCR assay for detection of chickpea chlorotic dwarf virus and peanut witches' broom phytoplasma in chickpea.

Reddy MG, et al.  3 Biotech. 2022 Jan;12(1):23. doi: 10.1007/s13205-021-03094-y. Epub 2021 Dec 22.

PMID: 35036271

9

First Report of Chickpea chlorotic dwarf virus Infecting Hot Pepper in India.

Byun HS, et al.  Plant Dis. 2014 Nov;98(11):1590. doi: 10.1094/PDIS-05-14-0440-PDN.

PMID: 30699800

10

A distinct strain of chickpea chlorotic dwarf virus (genus Mastrevirus, family Geminiviridae) identified in cotton plants affected by leaf curl disease.

Manzoor MT, et al.  Arch Virol. 2014 May;159(5):1217-21. doi: 10.1007/s00705-013-1911-4. Epub 2013 Nov 9.

PMID: 24212888