Chickpea chlorosis virus
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_000887795.1 |
| Isolate |
Australia |
| Release date |
2015/2/22 |
| Submitter |
Thomas,J.E., Parry,J.N., Schwinghamer,M.W., Dann,E.K. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCCGCGAGTGCCCGGCCCCACGCGAGCACGTTAGTGCGAGCGATATCGCGAGGAAAAAGCAAAAATCCTCGTGAGGATAAGTTAGTGCTATATAAAGGTGATGTGACATAAAGGTGTGAAAAATGTTAGGCGCCTACTATCAAATATTCCCTTCTGAGGAAAATTACTCTTATACCCCTGTTCAGACGCAGGAGTCTTTTTCTGGCGCGAAAGCAGGTGATTCATCCGAGCACGTATTTTCGAAAGTCGTCGTTGCTTTAATTATTATTCTTTTTTCAGTGGGAATCATTTATCTTGCCTATTCTTTATTTTTAAAAGATTTGATATTATTATTAAAGGCGAAAAAGCAGAGGACGACGACTGAGATAGGGTTTGGTAATACCCCTGGTAGACCCGGTTCTCAACCTCAGCAAAATGTCGGGCCGATTTAAGGGACAAGTGTACAGCAGGAAAAGGGGTCGTAATGCAAAGGCGTATCAGGCTCTGGGAGTTAAATCTCAACGGGAGTTGGAGCAGTTAGTTAACCAACCAGGACGTCCTATTGGTAATAGGCGTCCGTCACTGCAGGTCGCAGAGTATCTGTGGACGACCAACAAGGCTGGTGTGACGTTCTCGCCTGGTGGGGGAACTTATTTGTTCACTAATTACCCTCAAGGGGCGAACGAGAACTGCAGGCACACTAACCGGACCATAACGTACAAGATGGCTATCAAGTGTTGGGTTGCCTTGGATGGGTCTATGGTGGCTAGGGTTGCAAAGTTTCCAGTCCACTTCTGGTTAGTGTACGACAAGAACCCTGGTGATACGAATCCTTCTCCATCGGCTATTTTTGATAGTCTCTATCAAGATCAGCCTGGGACTTGGACTGTAACGAGGAATGTGTGTCATAGGTTTGTCGTTAAAAAGTCTTGGTCCGTGATGCTGGAGTCTAATGGGATTGATCCCAGTAAGTCTCAGTCCACATCATATTATGGGCCTGGGCCTTGTTATAATTGGAGGCACATGACCAAATTTTTTAAACGTTTAGGAGTTAGTACTGAGTGGAAGAATTCTTCCACTGGTGATGTTGCTGATATTAAGGAAGGAGCACTATACCTTGTATGTGCTCCTGGTGGTGGTGTTACTGTAAGAGTTGGCGGTAGATTCCGCATGTATTTCAAATCCGTTGGCAATCAATAAAAATGTTGTTATTTTGATTTCATATTAATGAGCTTCAGTGTAGAGAAATTCAAATCGTATTAATAAAAACCCGGAATACAAAAACACACGAAAAGGAAAAAAAGACACCTTACAATAATTACACTCTATATACCCTCCTATGAGGAGAGGCACGTTCAGTGACTCGACGATTCAGGAGCAATAAATGTCTCGCCGCTATACATATAATGGATCTTGCAGTTGGATTCAAAGTATTCCTTCTGAGAGGAAGACATATCTAATAACCAGTCGTCGTCATTATTAACTAATATAATACATGGTATTCCCCCTTTGATCCTCTTCTTTTTGCCGTATTTTGGATTTACGGTGAAGTCCTTCTGGGAACCCACTAGTTGCTTCCAGTTTGGGCAGAACTTGAAGGGGATGTCGTCGACGATATTGTAGGTGGCGTTAATGTCGTACGTGGTGAAGTCCACTCCTCCGTTGAAGTAGTTGTGTCTGCCGAGACTGCGGGCCCAGCTGGTCTTTCCGGTACGAGTTGGTCCGCAGATGTAGAGGGAGTTCCTTCGGTGTTGGAGTTGTTCGGGTTCCTGGTAAAATGATCCATCCATATCAAATCTTCAGTTGCTGTTTGGTAATTGATATTTGGATGAATTAAAGTGTAAGCATCGACGCTTACCACGTACAGGTCTCTGTTCAGCCACTCCTGTATTTCTTCGTGGCACTGAAGATCAATGGGGGAGAAGGGGTTTTCATATGGAGGCTCTATATCTGGGAACAGTTTATTGGCGCTATATTCAAGCCATTGTAGTTTGGTCGCCCATTCATGAGGGAACTGATCCCTAATCATTCTCAAATACTCCTCCTTAGTTGTTGCAGTCTGGATAATAGTTCGCCATCGTTCATCATGTTTAGTTGGGGAGACCTTGTGTTTTCGAAAGTCTCCTCTCGTGATGACGTTTCCATCCTTTGATATGTAATCAAGGACTTGTTCAGAATTTTTAGCTGGTTGGATATTTGGATGGTTTCCTTCAAAATCAAAAAAAGAAGGGTCACGTATATCCCCTCTTTTATCAAGCTGAAGAAGACAGTGAAGATGGGGAGTACCATCTTGATGGAGCTCAGTAGCAACAGCAATAAAGAAAATAGCAAAACGTGAGAGTTTTTCCCAGAGAAAGTCTCTGAGGCTTGTTGCAGTAGAGCTGCAATGGGGATAAGTAAGAAAAACATATTTGGTTTGTAGACGGAAGTTGTTTTGTCGTTTTGAAGAAGAAGGCATTATTTAGGCTTTCCTCAAACAGTGTTTTGCAAACTCTATCTTAACCAGCGAGTGAGGAAAATGAGGAAGGGGAGTGAGGTATTTATTTGAATGGAGGGCGAATAGCCCGCTGACACGTGGGGCGCACTCGCGGAATTTAATGTT
Gene Information
|
NCBI Accession
|
YP_004046665.1
|
|
Location
|
124-432 |
|
Protein Name
|
V2 |
|
Coding Region
|
ATGTTAGGCGCCTACTATCAAATATTCCCTTCTGAGGAAAATTACTCTTATACCCCTGTTCAGACGCAGGAGTCTTTTTCTGGCGCGAAAGCAGGTGATTCATCCGAGCACGTATTTTCGAAAGTCGTCGTTGCTTTAATTATTATTCTTTTTTCAGTGGGAATCATTTATCTTGCCTATTCTTTATTTTTAAAAGATTTGATATTATTATTAAAGGCGAAAAAGCAGAGGACGACGACTGAGATAGGGTTTGGTAATACCCCTGGTAGACCCGGTTCTCAACCTCAGCAAAATGTCGGGCCGATTTAA |
|
Protein Sequence
|
MLGAYYQIFPSEENYSYTPVQTQESFSGAKAGDSSEHVFSKVVVALIIILFSVGIIYLAYSLFLKDLILLLKAKKQRTTTEIGFGNTPGRPGSQPQQNVGPI |
|
NCBI Accession
|
YP_004046666.1
|
|
Location
|
416-1180 |
|
Protein Name
|
V1 |
|
Coding Region
|
ATGTCGGGCCGATTTAAGGGACAAGTGTACAGCAGGAAAAGGGGTCGTAATGCAAAGGCGTATCAGGCTCTGGGAGTTAAATCTCAACGGGAGTTGGAGCAGTTAGTTAACCAACCAGGACGTCCTATTGGTAATAGGCGTCCGTCACTGCAGGTCGCAGAGTATCTGTGGACGACCAACAAGGCTGGTGTGACGTTCTCGCCTGGTGGGGGAACTTATTTGTTCACTAATTACCCTCAAGGGGCGAACGAGAACTGCAGGCACACTAACCGGACCATAACGTACAAGATGGCTATCAAGTGTTGGGTTGCCTTGGATGGGTCTATGGTGGCTAGGGTTGCAAAGTTTCCAGTCCACTTCTGGTTAGTGTACGACAAGAACCCTGGTGATACGAATCCTTCTCCATCGGCTATTTTTGATAGTCTCTATCAAGATCAGCCTGGGACTTGGACTGTAACGAGGAATGTGTGTCATAGGTTTGTCGTTAAAAAGTCTTGGTCCGTGATGCTGGAGTCTAATGGGATTGATCCCAGTAAGTCTCAGTCCACATCATATTATGGGCCTGGGCCTTGTTATAATTGGAGGCACATGACCAAATTTTTTAAACGTTTAGGAGTTAGTACTGAGTGGAAGAATTCTTCCACTGGTGATGTTGCTGATATTAAGGAAGGAGCACTATACCTTGTATGTGCTCCTGGTGGTGGTGTTACTGTAAGAGTTGGCGGTAGATTCCGCATGTATTTCAAATCCGTTGGCAATCAATAA |
|
Protein Sequence
|
MSGRFKGQVYSRKRGRNAKAYQALGVKSQRELEQLVNQPGRPIGNRRPSLQVAEYLWTTNKAGVTFSPGGGTYLFTNYPQGANENCRHTNRTITYKMAIKCWVALDGSMVARVAKFPVHFWLVYDKNPGDTNPSPSAIFDSLYQDQPGTWTVTRNVCHRFVVKKSWSVMLESNGIDPSKSQSTSYYGPGPCYNWRHMTKFFKRLGVSTEWKNSSTGDVADIKEGALYLVCAPGGGVTVRVGGRFRMYFKSVGNQ |
|
NCBI Accession
|
YP_004046667.1
|
|
Location
|
1336-1749,1851-2438 |
|
Protein Name
|
C1:C2 |
|
Coding Region
|
ATGCCTTCTTCTTCAAAACGACAAAACAACTTCCGTCTACAAACCAAATATGTTTTTCTTACTTATCCCCATTGCAGCTCTACTGCAACAAGCCTCAGAGACTTTCTCTGGGAAAAACTCTCACGTTTTGCTATTTTCTTTATTGCTGTTGCTACTGAGCTCCATCAAGATGGTACTCCCCATCTTCACTGTCTTCTTCAGCTTGATAAAAGAGGGGATATACGTGACCCTTCTTTTTTTGATTTTGAAGGAAACCATCCAAATATCCAACCAGCTAAAAATTCTGAACAAGTCCTTGATTACATATCAAAGGATGGAAACGTCATCACGAGAGGAGACTTTCGAAAACACAAGGTCTCCCCAACTAAACATGATGAACGATGGCGAACTATTATCCAGACTGCAACAACTAAGGAGGAGTATTTGAGAATGATTAGGGATCAGTTCCCTCATGAATGGGCGACCAAACTACAATGGCTTGAATATAGCGCCAATAAACTGTTCCCAGATATAGAGCCTCCATATGAAAACCCCTTCTCCCCCATTGATCTTCAGTGCCACGAAGAAATACAGGAGTGGCTGAACAGAGAACCCGAACAACTCCAACACCGAAGGAACTCCCTCTACATCTGCGGACCAACTCGTACCGGAAAGACCAGCTGGGCCCGCAGTCTCGGCAGACACAACTACTTCAACGGAGGAGTGGACTTCACCACGTACGACATTAACGCCACCTACAATATCGTCGACGACATCCCCTTCAAGTTCTGCCCAAACTGGAAGCAACTAGTGGGTTCCCAGAAGGACTTCACCGTAAATCCAAAATACGGCAAAAAGAAGAGGATCAAAGGGGGAATACCATGTATTATATTAGTTAATAATGACGACGACTGGTTATTAGATATGTCTTCCTCTCAGAAGGAATACTTTGAATCCAACTGCAAGATCCATTATATGTATAGCGGCGAGACATTTATTGCTCCTGAATCGTCGAGTCACTGA |
|
Protein Sequence
|
MPSSSKRQNNFRLQTKYVFLTYPHCSSTATSLRDFLWEKLSRFAIFFIAVATELHQDGTPHLHCLLQLDKRGDIRDPSFFDFEGNHPNIQPAKNSEQVLDYISKDGNVITRGDFRKHKVSPTKHDERWRTIIQTATTKEEYLRMIRDQFPHEWATKLQWLEYSANKLFPDIEPPYENPFSPIDLQCHEEIQEWLNREPEQLQHRRNSLYICGPTRTGKTSWARSLGRHNYFNGGVDFTTYDINATYNIVDDIPFKFCPNWKQLVGSQKDFTVNPKYGKKKRIKGGIPCIILVNNDDDWLLDMSSSQKEYFESNCKIHYMYSGETFIAPESSSH |
|
NCBI Accession
|
YP_004046668.1
|
|
Location
|
1548-2438 |
|
Protein Name
|
C1 |
|
Coding Region
|
ATGCCTTCTTCTTCAAAACGACAAAACAACTTCCGTCTACAAACCAAATATGTTTTTCTTACTTATCCCCATTGCAGCTCTACTGCAACAAGCCTCAGAGACTTTCTCTGGGAAAAACTCTCACGTTTTGCTATTTTCTTTATTGCTGTTGCTACTGAGCTCCATCAAGATGGTACTCCCCATCTTCACTGTCTTCTTCAGCTTGATAAAAGAGGGGATATACGTGACCCTTCTTTTTTTGATTTTGAAGGAAACCATCCAAATATCCAACCAGCTAAAAATTCTGAACAAGTCCTTGATTACATATCAAAGGATGGAAACGTCATCACGAGAGGAGACTTTCGAAAACACAAGGTCTCCCCAACTAAACATGATGAACGATGGCGAACTATTATCCAGACTGCAACAACTAAGGAGGAGTATTTGAGAATGATTAGGGATCAGTTCCCTCATGAATGGGCGACCAAACTACAATGGCTTGAATATAGCGCCAATAAACTGTTCCCAGATATAGAGCCTCCATATGAAAACCCCTTCTCCCCCATTGATCTTCAGTGCCACGAAGAAATACAGGAGTGGCTGAACAGAGACCTGTACGTGGTAAGCGTCGATGCTTACACTTTAATTCATCCAAATATCAATTACCAAACAGCAACTGAAGATTTGATATGGATGGATCATTTTACCAGGAACCCGAACAACTCCAACACCGAAGGAACTCCCTCTACATCTGCGGACCAACTCGTACCGGAAAGACCAGCTGGGCCCGCAGTCTCGGCAGACACAACTACTTCAACGGAGGAGTGGACTTCACCACGTACGACATTAACGCCACCTACAATATCGTCGACGACATCCCCTTCAAGTTCTGCCCAAACTGGAAGCAACTAG |
|
Protein Sequence
|
MPSSSKRQNNFRLQTKYVFLTYPHCSSTATSLRDFLWEKLSRFAIFFIAVATELHQDGTPHLHCLLQLDKRGDIRDPSFFDFEGNHPNIQPAKNSEQVLDYISKDGNVITRGDFRKHKVSPTKHDERWRTIIQTATTKEEYLRMIRDQFPHEWATKLQWLEYSANKLFPDIEPPYENPFSPIDLQCHEEIQEWLNRDLYVVSVDAYTLIHPNINYQTATEDLIWMDHFTRNPNNSNTEGTPSTSADQLVPERPAGPAVSADTTTSTEEWTSPRTTLTPPTISSTTSPSSSAQTGSN |