Chickpea chlorosis virus

Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000887795.1
Isolate Australia
Release date 2015/2/22
Submitter Thomas,J.E., Parry,J.N., Schwinghamer,M.W., Dann,E.K.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_014740
ACCCGCGAGTGCCCGGCCCCACGCGAGCACGTTAGTGCGAGCGATATCGCGAGGAAAAAGCAAAAATCCTCGTGAGGATAAGTTAGTGCTATATAAAGGTGATGTGACATAAAGGTGTGAAAAATGTTAGGCGCCTACTATCAAATATTCCCTTCTGAGGAAAATTACTCTTATACCCCTGTTCAGACGCAGGAGTCTTTTTCTGGCGCGAAAGCAGGTGATTCATCCGAGCACGTATTTTCGAAAGTCGTCGTTGCTTTAATTATTATTCTTTTTTCAGTGGGAATCATTTATCTTGCCTATTCTTTATTTTTAAAAGATTTGATATTATTATTAAAGGCGAAAAAGCAGAGGACGACGACTGAGATAGGGTTTGGTAATACCCCTGGTAGACCCGGTTCTCAACCTCAGCAAAATGTCGGGCCGATTTAAGGGACAAGTGTACAGCAGGAAAAGGGGTCGTAATGCAAAGGCGTATCAGGCTCTGGGAGTTAAATCTCAACGGGAGTTGGAGCAGTTAGTTAACCAACCAGGACGTCCTATTGGTAATAGGCGTCCGTCACTGCAGGTCGCAGAGTATCTGTGGACGACCAACAAGGCTGGTGTGACGTTCTCGCCTGGTGGGGGAACTTATTTGTTCACTAATTACCCTCAAGGGGCGAACGAGAACTGCAGGCACACTAACCGGACCATAACGTACAAGATGGCTATCAAGTGTTGGGTTGCCTTGGATGGGTCTATGGTGGCTAGGGTTGCAAAGTTTCCAGTCCACTTCTGGTTAGTGTACGACAAGAACCCTGGTGATACGAATCCTTCTCCATCGGCTATTTTTGATAGTCTCTATCAAGATCAGCCTGGGACTTGGACTGTAACGAGGAATGTGTGTCATAGGTTTGTCGTTAAAAAGTCTTGGTCCGTGATGCTGGAGTCTAATGGGATTGATCCCAGTAAGTCTCAGTCCACATCATATTATGGGCCTGGGCCTTGTTATAATTGGAGGCACATGACCAAATTTTTTAAACGTTTAGGAGTTAGTACTGAGTGGAAGAATTCTTCCACTGGTGATGTTGCTGATATTAAGGAAGGAGCACTATACCTTGTATGTGCTCCTGGTGGTGGTGTTACTGTAAGAGTTGGCGGTAGATTCCGCATGTATTTCAAATCCGTTGGCAATCAATAAAAATGTTGTTATTTTGATTTCATATTAATGAGCTTCAGTGTAGAGAAATTCAAATCGTATTAATAAAAACCCGGAATACAAAAACACACGAAAAGGAAAAAAAGACACCTTACAATAATTACACTCTATATACCCTCCTATGAGGAGAGGCACGTTCAGTGACTCGACGATTCAGGAGCAATAAATGTCTCGCCGCTATACATATAATGGATCTTGCAGTTGGATTCAAAGTATTCCTTCTGAGAGGAAGACATATCTAATAACCAGTCGTCGTCATTATTAACTAATATAATACATGGTATTCCCCCTTTGATCCTCTTCTTTTTGCCGTATTTTGGATTTACGGTGAAGTCCTTCTGGGAACCCACTAGTTGCTTCCAGTTTGGGCAGAACTTGAAGGGGATGTCGTCGACGATATTGTAGGTGGCGTTAATGTCGTACGTGGTGAAGTCCACTCCTCCGTTGAAGTAGTTGTGTCTGCCGAGACTGCGGGCCCAGCTGGTCTTTCCGGTACGAGTTGGTCCGCAGATGTAGAGGGAGTTCCTTCGGTGTTGGAGTTGTTCGGGTTCCTGGTAAAATGATCCATCCATATCAAATCTTCAGTTGCTGTTTGGTAATTGATATTTGGATGAATTAAAGTGTAAGCATCGACGCTTACCACGTACAGGTCTCTGTTCAGCCACTCCTGTATTTCTTCGTGGCACTGAAGATCAATGGGGGAGAAGGGGTTTTCATATGGAGGCTCTATATCTGGGAACAGTTTATTGGCGCTATATTCAAGCCATTGTAGTTTGGTCGCCCATTCATGAGGGAACTGATCCCTAATCATTCTCAAATACTCCTCCTTAGTTGTTGCAGTCTGGATAATAGTTCGCCATCGTTCATCATGTTTAGTTGGGGAGACCTTGTGTTTTCGAAAGTCTCCTCTCGTGATGACGTTTCCATCCTTTGATATGTAATCAAGGACTTGTTCAGAATTTTTAGCTGGTTGGATATTTGGATGGTTTCCTTCAAAATCAAAAAAAGAAGGGTCACGTATATCCCCTCTTTTATCAAGCTGAAGAAGACAGTGAAGATGGGGAGTACCATCTTGATGGAGCTCAGTAGCAACAGCAATAAAGAAAATAGCAAAACGTGAGAGTTTTTCCCAGAGAAAGTCTCTGAGGCTTGTTGCAGTAGAGCTGCAATGGGGATAAGTAAGAAAAACATATTTGGTTTGTAGACGGAAGTTGTTTTGTCGTTTTGAAGAAGAAGGCATTATTTAGGCTTTCCTCAAACAGTGTTTTGCAAACTCTATCTTAACCAGCGAGTGAGGAAAATGAGGAAGGGGAGTGAGGTATTTATTTGAATGGAGGGCGAATAGCCCGCTGACACGTGGGGCGCACTCGCGGAATTTAATGTT

Gene Information

NCBI Accession YP_004046665.1
Location 124-432
Protein Name V2
Coding Region ATGTTAGGCGCCTACTATCAAATATTCCCTTCTGAGGAAAATTACTCTTATACCCCTGTTCAGACGCAGGAGTCTTTTTCTGGCGCGAAAGCAGGTGATTCATCCGAGCACGTATTTTCGAAAGTCGTCGTTGCTTTAATTATTATTCTTTTTTCAGTGGGAATCATTTATCTTGCCTATTCTTTATTTTTAAAAGATTTGATATTATTATTAAAGGCGAAAAAGCAGAGGACGACGACTGAGATAGGGTTTGGTAATACCCCTGGTAGACCCGGTTCTCAACCTCAGCAAAATGTCGGGCCGATTTAA
Protein Sequence MLGAYYQIFPSEENYSYTPVQTQESFSGAKAGDSSEHVFSKVVVALIIILFSVGIIYLAYSLFLKDLILLLKAKKQRTTTEIGFGNTPGRPGSQPQQNVGPI

NCBI Accession YP_004046666.1
Location 416-1180
Protein Name V1
Coding Region ATGTCGGGCCGATTTAAGGGACAAGTGTACAGCAGGAAAAGGGGTCGTAATGCAAAGGCGTATCAGGCTCTGGGAGTTAAATCTCAACGGGAGTTGGAGCAGTTAGTTAACCAACCAGGACGTCCTATTGGTAATAGGCGTCCGTCACTGCAGGTCGCAGAGTATCTGTGGACGACCAACAAGGCTGGTGTGACGTTCTCGCCTGGTGGGGGAACTTATTTGTTCACTAATTACCCTCAAGGGGCGAACGAGAACTGCAGGCACACTAACCGGACCATAACGTACAAGATGGCTATCAAGTGTTGGGTTGCCTTGGATGGGTCTATGGTGGCTAGGGTTGCAAAGTTTCCAGTCCACTTCTGGTTAGTGTACGACAAGAACCCTGGTGATACGAATCCTTCTCCATCGGCTATTTTTGATAGTCTCTATCAAGATCAGCCTGGGACTTGGACTGTAACGAGGAATGTGTGTCATAGGTTTGTCGTTAAAAAGTCTTGGTCCGTGATGCTGGAGTCTAATGGGATTGATCCCAGTAAGTCTCAGTCCACATCATATTATGGGCCTGGGCCTTGTTATAATTGGAGGCACATGACCAAATTTTTTAAACGTTTAGGAGTTAGTACTGAGTGGAAGAATTCTTCCACTGGTGATGTTGCTGATATTAAGGAAGGAGCACTATACCTTGTATGTGCTCCTGGTGGTGGTGTTACTGTAAGAGTTGGCGGTAGATTCCGCATGTATTTCAAATCCGTTGGCAATCAATAA
Protein Sequence MSGRFKGQVYSRKRGRNAKAYQALGVKSQRELEQLVNQPGRPIGNRRPSLQVAEYLWTTNKAGVTFSPGGGTYLFTNYPQGANENCRHTNRTITYKMAIKCWVALDGSMVARVAKFPVHFWLVYDKNPGDTNPSPSAIFDSLYQDQPGTWTVTRNVCHRFVVKKSWSVMLESNGIDPSKSQSTSYYGPGPCYNWRHMTKFFKRLGVSTEWKNSSTGDVADIKEGALYLVCAPGGGVTVRVGGRFRMYFKSVGNQ

NCBI Accession YP_004046667.1
Location 1336-1749,1851-2438
Protein Name C1:C2
Coding Region ATGCCTTCTTCTTCAAAACGACAAAACAACTTCCGTCTACAAACCAAATATGTTTTTCTTACTTATCCCCATTGCAGCTCTACTGCAACAAGCCTCAGAGACTTTCTCTGGGAAAAACTCTCACGTTTTGCTATTTTCTTTATTGCTGTTGCTACTGAGCTCCATCAAGATGGTACTCCCCATCTTCACTGTCTTCTTCAGCTTGATAAAAGAGGGGATATACGTGACCCTTCTTTTTTTGATTTTGAAGGAAACCATCCAAATATCCAACCAGCTAAAAATTCTGAACAAGTCCTTGATTACATATCAAAGGATGGAAACGTCATCACGAGAGGAGACTTTCGAAAACACAAGGTCTCCCCAACTAAACATGATGAACGATGGCGAACTATTATCCAGACTGCAACAACTAAGGAGGAGTATTTGAGAATGATTAGGGATCAGTTCCCTCATGAATGGGCGACCAAACTACAATGGCTTGAATATAGCGCCAATAAACTGTTCCCAGATATAGAGCCTCCATATGAAAACCCCTTCTCCCCCATTGATCTTCAGTGCCACGAAGAAATACAGGAGTGGCTGAACAGAGAACCCGAACAACTCCAACACCGAAGGAACTCCCTCTACATCTGCGGACCAACTCGTACCGGAAAGACCAGCTGGGCCCGCAGTCTCGGCAGACACAACTACTTCAACGGAGGAGTGGACTTCACCACGTACGACATTAACGCCACCTACAATATCGTCGACGACATCCCCTTCAAGTTCTGCCCAAACTGGAAGCAACTAGTGGGTTCCCAGAAGGACTTCACCGTAAATCCAAAATACGGCAAAAAGAAGAGGATCAAAGGGGGAATACCATGTATTATATTAGTTAATAATGACGACGACTGGTTATTAGATATGTCTTCCTCTCAGAAGGAATACTTTGAATCCAACTGCAAGATCCATTATATGTATAGCGGCGAGACATTTATTGCTCCTGAATCGTCGAGTCACTGA
Protein Sequence MPSSSKRQNNFRLQTKYVFLTYPHCSSTATSLRDFLWEKLSRFAIFFIAVATELHQDGTPHLHCLLQLDKRGDIRDPSFFDFEGNHPNIQPAKNSEQVLDYISKDGNVITRGDFRKHKVSPTKHDERWRTIIQTATTKEEYLRMIRDQFPHEWATKLQWLEYSANKLFPDIEPPYENPFSPIDLQCHEEIQEWLNREPEQLQHRRNSLYICGPTRTGKTSWARSLGRHNYFNGGVDFTTYDINATYNIVDDIPFKFCPNWKQLVGSQKDFTVNPKYGKKKRIKGGIPCIILVNNDDDWLLDMSSSQKEYFESNCKIHYMYSGETFIAPESSSH

NCBI Accession YP_004046668.1
Location 1548-2438
Protein Name C1
Coding Region ATGCCTTCTTCTTCAAAACGACAAAACAACTTCCGTCTACAAACCAAATATGTTTTTCTTACTTATCCCCATTGCAGCTCTACTGCAACAAGCCTCAGAGACTTTCTCTGGGAAAAACTCTCACGTTTTGCTATTTTCTTTATTGCTGTTGCTACTGAGCTCCATCAAGATGGTACTCCCCATCTTCACTGTCTTCTTCAGCTTGATAAAAGAGGGGATATACGTGACCCTTCTTTTTTTGATTTTGAAGGAAACCATCCAAATATCCAACCAGCTAAAAATTCTGAACAAGTCCTTGATTACATATCAAAGGATGGAAACGTCATCACGAGAGGAGACTTTCGAAAACACAAGGTCTCCCCAACTAAACATGATGAACGATGGCGAACTATTATCCAGACTGCAACAACTAAGGAGGAGTATTTGAGAATGATTAGGGATCAGTTCCCTCATGAATGGGCGACCAAACTACAATGGCTTGAATATAGCGCCAATAAACTGTTCCCAGATATAGAGCCTCCATATGAAAACCCCTTCTCCCCCATTGATCTTCAGTGCCACGAAGAAATACAGGAGTGGCTGAACAGAGACCTGTACGTGGTAAGCGTCGATGCTTACACTTTAATTCATCCAAATATCAATTACCAAACAGCAACTGAAGATTTGATATGGATGGATCATTTTACCAGGAACCCGAACAACTCCAACACCGAAGGAACTCCCTCTACATCTGCGGACCAACTCGTACCGGAAAGACCAGCTGGGCCCGCAGTCTCGGCAGACACAACTACTTCAACGGAGGAGTGGACTTCACCACGTACGACATTAACGCCACCTACAATATCGTCGACGACATCCCCTTCAAGTTCTGCCCAAACTGGAAGCAACTAG
Protein Sequence MPSSSKRQNNFRLQTKYVFLTYPHCSSTATSLRDFLWEKLSRFAIFFIAVATELHQDGTPHLHCLLQLDKRGDIRDPSFFDFEGNHPNIQPAKNSEQVLDYISKDGNVITRGDFRKHKVSPTKHDERWRTIIQTATTKEEYLRMIRDQFPHEWATKLQWLEYSANKLFPDIEPPYENPFSPIDLQCHEEIQEWLNRDLYVVSVDAYTLIHPNINYQTATEDLIWMDHFTRNPNNSNTEGTPSTSADQLVPERPAGPAVSADTTTSTEEWTSPRTTLTPPTISSTTSPSSSAQTGSN

References More References in PubMed

1

Identification of New Chickpea Virus and Control of Chickpea Virus Disease.

Cun Z.  Evid Based Complement Alternat Med. 2022 May 28;2022:6465505. doi: 10.1155/2022/6465505. eCollection 2022.

PMID: 35668786
2

Two novel mastreviruses from chickpea (Cicer arietinum) in Australia.

Thomas JE, et al.  Arch Virol. 2010 Nov;155(11):1777-88. doi: 10.1007/s00705-010-0763-4. Epub 2010 Aug 24.

PMID: 20734091
3

Nucleotide sequence of a chickpea chlorotic stunt virus relative that infects pea and faba bean in China.

Zhou CJ, et al.  Arch Virol. 2012 Jul;157(7):1393-6. doi: 10.1007/s00705-012-1301-3. Epub 2012 Apr 3.

PMID: 22476900
4

First genome analysis and molecular characterization of Chickpea chlorotic dwarf virus Egyptian isolate infecting squash.

Fahmy IF, et al.  Virusdisease. 2015 Jun;26(1-2):33-41. doi: 10.1007/s13337-014-0246-4. Epub 2015 Feb 14.

PMID: 26436119
5

Viromes of Ten Alfalfa Plants in Australia Reveal Diverse Known Viruses and a Novel RNA Virus.

Samarfard S, et al.  Pathogens. 2020 Mar 13;9(3):214. doi: 10.3390/pathogens9030214.

PMID: 32183134
6

First Report of Bean Leafroll Luteovirus Infecting Pea in Italy.

Larsen RC, et al.  Plant Dis. 1999 Apr;83(4):399. doi: 10.1094/PDIS.1999.83.4.399B.

PMID: 30845604
7

First Report of Red Clover Vein Mosaic Carlavirus Naturally Infecting Lentil.

Larsen RC, et al.  Plant Dis. 1998 Sep;82(9):1064. doi: 10.1094/PDIS.1998.82.9.1064A.

PMID: 30856843