Chickpea chlorosis Australia virus

Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000911975.1
Isolate Australia
Release date 2015/2/22
Submitter Hadfield,J., Thomas,J.E., Schwinghamer,M.W., Kraberger,S., Stainton,D., Dayaram,A., Parry,J.N., Pande,D., Martin,D.P., Varsani,A.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_022131
ATGTATCCCGCCAAGTACGTGGTGTATCCTTCAGAGAGTAATTACTCTTATACCCCTGTTGGTGGTGATTCCTCTGATACTTCCTCAGGAAGTTCTTCATCTGAAAATATTTTTTCGAAAGTTGTGGTTGCTCTTATAATTATTTTATTTACTGTAGGTATAATTTATTTAGCTTATACTCTTTTTTTAAAAGATTTAATTCTTTTATTGAAGGCCAAGAAGCAGAGAACCACAACTGAGATAGGGTTTGGAAATACCCCTGCACGACCTAATAGTCAGAGGCAACAAGATGTCGGGCCGGTATAAGGGACAGGTATACAGAAGGAAGAAGGGGCAGTATGCAAAGGCGTATTCCGCACTTGGAGTTAATTCAAAACGGGAGTTGGAGCAGTTAGTTAATCAACCTGGGCGTCCTCTTCAATTAAGGCGCCCAGCCCTGCAGGTTGCTGAATACCTGTGGACGTCCAATAAGGCGGGTGTTACGTTTTCTCCTGGTGGTTCAACATTTTTGTTCACTAATTTCCCTCAGGGTGCTAATGAAAACTGCAGGCACACTAACCGCACCATCACTTACAAGATGGCCATAAAGGCATGGGTTGCCTTGGATGGCTCTATGGTTAACAGGGTGTGCAAATTTCCAGTATATTTCTGGTTAGTGTATGACAAGAACCCTGGTGATAGTAATCCTGGGCCCTCAGCCATATTTGATACTCTCTATCAAGATCAGCCTGGTACATGGACTGTTACCCGCAATGTTTGTCACAGGTTCGTTGTTAAAAAACAATGGTCTGTGATGCTGGAAGCTAATGGAGTGGATCCTAGTGTGAAACAAGGATCTACTTACTATGGTCCTGGACCTTGCTATGGTTGGAGGCAGATGAACAAGTTTTTTAAGAGGCTCGGAGTTAGTACTGAGTGGAAGAATTCTTCCACAGGGGATGTTGCTGATATTAAAGAAGGAGCACTTTATCTTGTATGTGCTCCTGCAGGTGGTGCAACCGTTAGGGTTGGGGGTAGATTTCGCATGTATTTCAAATCAGTTGGAAATCAATAAAAAAATTATTTAATATTTTGATGTCATATTATTGAGTAATAGTAGATAGGAAATTACAAATGTTTATTACACAATTATAAAACAACCCCAAATAAAAACTAAATTACACACAAATCAAATTACATTATATATTCTCTGAAGGAGGAGAGGCACGTTGAGTGACTTGACGACGCGCAGCAATAAATGTTTCTCCCTCAGTCATGTAATGAATTAAACAATTGGATTCAAAGTATTCATTCTGAGAGGAAGACATGTCTTTGATCCAATCGTCATCGTTATTTACTAATATAATAGTTGGGATACCTCCCTTAACCCTTTTTTTTTTACCATATTTTGGGTTCACAGTAAAATCTTTCTGTGAACCTACTAATTGCTTCCAATTTGGACAAAATTTAAATGGTATATCATCAATTATGTTGAAGGTGGCGTTGGGGTCATAGGTTGTGAAGTCGATTCCTCCGTTGAAGTAATTGTGTCTTCCGAGGCTTCTTGCCCAGGATGTCTTTCCGGTACGAGTTGGTCCGCAGATGTAGAGGGATCTTCTTCTGTGTTGGAGTTGTTCGGGTTCCTGGTGTATTCATCCATCCAAATTAGATCTTCTGTTGCAGTTTGTATAGATAAATTTGGATGAAGTAAATGGTAAGATTCTACACTTACCACGTAAAGGTCTCTGTTAAGCCACTCAGTAATTTCTTCATCACATTGAAGAAATTCATTTGGAAATGGACTAGAGTAAGGAGGTTCAATATCTGGAAATAGTTTATTTGCACTATATTCTAGCCATTGGAGTTTTGTGGCCCATTCATGTGGAAATTCAGTTTTAATCATTTCCAAATAATCTTCTTTAGTTGTTGCAGTCTGAATAATAGTTCTCCATCTGTCATCAGATTTTGTTGGGGAGACCTTGTGTTTTCTAAAGTCTCCTCTTGTGATGACACTTCCATCCTTGGAGATGTAGTCAAGAACTTGTTCAGAATTTTTAGCTGGTTGGATATTTGGATGGTTTCCTTGAAAATCAAAAAAAGAAGGGTCACGTATATTGCTTCTTTTGTCAAGTTGAAGCAGGCAGTGAAGATGGGGAGTACCATCTTGGTGAAGCTCAGTAGCAACAGCGATAAAGAAAATAGCAAAACGTGAAAGTTTTTCCCAGAGAAAGTCTCTAAGACTTTCGGCATCTGAGCTGCAGCGAGGATAAGTAAGGAAGACATATTTTGTTTGAAGTCTGAATGAAGATGAGGGTTTTTTTGTTTGAGGCATATTTTGGCTCAGAACAGTGTTTTGAAACTCTATCCTTACTAGCGAGTGAGCCAAATGAGCCACTCTGTTTTGTATTAAATAATAGGCAAGGACCAATTCCTTGTTGCCACGTGGGGCGCACTCGCGGAATTTAATGTTACCCGCGAGTGCCTGGCCCCACGCGAGCACGATAGTGCGAGCAAAAAGTTGAAGATAAGATGCTTTTGCTCATGAGCCACTCTTAGTGCTATATAAAGGTGATGTGATCTCTCCACTTTGAAA

Gene Information

NCBI Accession YP_008472702.1
Location 1-306
Protein Name movement protein
Coding Region ATGTATCCCGCCAAGTACGTGGTGTATCCTTCAGAGAGTAATTACTCTTATACCCCTGTTGGTGGTGATTCCTCTGATACTTCCTCAGGAAGTTCTTCATCTGAAAATATTTTTTCGAAAGTTGTGGTTGCTCTTATAATTATTTTATTTACTGTAGGTATAATTTATTTAGCTTATACTCTTTTTTTAAAAGATTTAATTCTTTTATTGAAGGCCAAGAAGCAGAGAACCACAACTGAGATAGGGTTTGGAAATACCCCTGCACGACCTAATAGTCAGAGGCAACAAGATGTCGGGCCGGTATAA
Protein Sequence MYPAKYVVYPSESNYSYTPVGGDSSDTSSGSSSSENIFSKVVVALIIILFTVGIIYLAYTLFLKDLILLLKAKKQRTTTEIGFGNTPARPNSQRQQDVGPV

NCBI Accession YP_008472703.1
Location 290-1054
Protein Name coat protein
Coding Region ATGTCGGGCCGGTATAAGGGACAGGTATACAGAAGGAAGAAGGGGCAGTATGCAAAGGCGTATTCCGCACTTGGAGTTAATTCAAAACGGGAGTTGGAGCAGTTAGTTAATCAACCTGGGCGTCCTCTTCAATTAAGGCGCCCAGCCCTGCAGGTTGCTGAATACCTGTGGACGTCCAATAAGGCGGGTGTTACGTTTTCTCCTGGTGGTTCAACATTTTTGTTCACTAATTTCCCTCAGGGTGCTAATGAAAACTGCAGGCACACTAACCGCACCATCACTTACAAGATGGCCATAAAGGCATGGGTTGCCTTGGATGGCTCTATGGTTAACAGGGTGTGCAAATTTCCAGTATATTTCTGGTTAGTGTATGACAAGAACCCTGGTGATAGTAATCCTGGGCCCTCAGCCATATTTGATACTCTCTATCAAGATCAGCCTGGTACATGGACTGTTACCCGCAATGTTTGTCACAGGTTCGTTGTTAAAAAACAATGGTCTGTGATGCTGGAAGCTAATGGAGTGGATCCTAGTGTGAAACAAGGATCTACTTACTATGGTCCTGGACCTTGCTATGGTTGGAGGCAGATGAACAAGTTTTTTAAGAGGCTCGGAGTTAGTACTGAGTGGAAGAATTCTTCCACAGGGGATGTTGCTGATATTAAAGAAGGAGCACTTTATCTTGTATGTGCTCCTGCAGGTGGTGCAACCGTTAGGGTTGGGGGTAGATTTCGCATGTATTTCAAATCAGTTGGAAATCAATAA
Protein Sequence MSGRYKGQVYRRKKGQYAKAYSALGVNSKRELEQLVNQPGRPLQLRRPALQVAEYLWTSNKAGVTFSPGGSTFLFTNFPQGANENCRHTNRTITYKMAIKAWVALDGSMVNRVCKFPVYFWLVYDKNPGDSNPGPSAIFDTLYQDQPGTWTVTRNVCHRFVVKKQWSVMLEANGVDPSVKQGSTYYGPGPCYGWRQMNKFFKRLGVSTEWKNSSTGDVADIKEGALYLVCAPAGGATVRVGGRFRMYFKSVGNQ

NCBI Accession YP_008472704.1
Location 1179-1622,1712-2311
Protein Name replication associated protein
Coding Region ATGCCTCAAACAAAAAAACCCTCATCTTCATTCAGACTTCAAACAAAATATGTCTTCCTTACTTATCCTCGCTGCAGCTCAGATGCCGAAAGTCTTAGAGACTTTCTCTGGGAAAAACTTTCACGTTTTGCTATTTTCTTTATCGCTGTTGCTACTGAGCTTCACCAAGATGGTACTCCCCATCTTCACTGCCTGCTTCAACTTGACAAAAGAAGCAATATACGTGACCCTTCTTTTTTTGATTTTCAAGGAAACCATCCAAATATCCAACCAGCTAAAAATTCTGAACAAGTTCTTGACTACATCTCCAAGGATGGAAGTGTCATCACAAGAGGAGACTTTAGAAAACACAAGGTCTCCCCAACAAAATCTGATGACAGATGGAGAACTATTATTCAGACTGCAACAACTAAAGAAGATTATTTGGAAATGATTAAAACTGAATTTCCACATGAATGGGCCACAAAACTCCAATGGCTAGAATATAGTGCAAATAAACTATTTCCAGATATTGAACCTCCTTACTCTAGTCCATTTCCAAATGAATTTCTTCAATGTGATGAAGAAATTACTGAGTGGCTTAACAGAGACCTTTACGTGGAACCCGAACAACTCCAACACAGAAGAAGATCCCTCTACATCTGCGGACCAACTCGTACCGGAAAGACATCCTGGGCAAGAAGCCTCGGAAGACACAATTACTTCAACGGAGGAATCGACTTCACAACCTATGACCCCAACGCCACCTTCAACATAATTGATGATATACCATTTAAATTTTGTCCAAATTGGAAGCAATTAGTAGGTTCACAGAAAGATTTTACTGTGAACCCAAAATATGGTAAAAAAAAAAGGGTTAAGGGAGGTATCCCAACTATTATATTAGTAAATAACGATGACGATTGGATCAAAGACATGTCTTCCTCTCAGAATGAATACTTTGAATCCAATTGTTTAATTCATTACATGACTGAGGGAGAAACATTTATTGCTGCGCGTCGTCAAGTCACTCAACGTGCCTCTCCTCCTTCAGAGAATATATAA
Protein Sequence MPQTKKPSSSFRLQTKYVFLTYPRCSSDAESLRDFLWEKLSRFAIFFIAVATELHQDGTPHLHCLLQLDKRSNIRDPSFFDFQGNHPNIQPAKNSEQVLDYISKDGSVITRGDFRKHKVSPTKSDDRWRTIIQTATTKEDYLEMIKTEFPHEWATKLQWLEYSANKLFPDIEPPYSSPFPNEFLQCDEEITEWLNRDLYVEPEQLQHRRRSLYICGPTRTGKTSWARSLGRHNYFNGGIDFTTYDPNATFNIIDDIPFKFCPNWKQLVGSQKDFTVNPKYGKKKRVKGGIPTIILVNNDDDWIKDMSSSQNEYFESNCLIHYMTEGETFIAARRQVTQRASPPSENI

NCBI Accession YP_008472705.1
Location 1466-2311
Protein Name RepA protein
Coding Region ATGCCTCAAACAAAAAAACCCTCATCTTCATTCAGACTTCAAACAAAATATGTCTTCCTTACTTATCCTCGCTGCAGCTCAGATGCCGAAAGTCTTAGAGACTTTCTCTGGGAAAAACTTTCACGTTTTGCTATTTTCTTTATCGCTGTTGCTACTGAGCTTCACCAAGATGGTACTCCCCATCTTCACTGCCTGCTTCAACTTGACAAAAGAAGCAATATACGTGACCCTTCTTTTTTTGATTTTCAAGGAAACCATCCAAATATCCAACCAGCTAAAAATTCTGAACAAGTTCTTGACTACATCTCCAAGGATGGAAGTGTCATCACAAGAGGAGACTTTAGAAAACACAAGGTCTCCCCAACAAAATCTGATGACAGATGGAGAACTATTATTCAGACTGCAACAACTAAAGAAGATTATTTGGAAATGATTAAAACTGAATTTCCACATGAATGGGCCACAAAACTCCAATGGCTAGAATATAGTGCAAATAAACTATTTCCAGATATTGAACCTCCTTACTCTAGTCCATTTCCAAATGAATTTCTTCAATGTGATGAAGAAATTACTGAGTGGCTTAACAGAGACCTTTACGTGGTAAGTGTAGAATCTTACCATTTACTTCATCCAAATTTATCTATACAAACTGCAACAGAAGATCTAATTTGGATGGATGAATACACCAGGAACCCGAACAACTCCAACACAGAAGAAGATCCCTCTACATCTGCGGACCAACTCGTACCGGAAAGACATCCTGGGCAAGAAGCCTCGGAAGACACAATTACTTCAACGGAGGAATCGACTTCACAACCTATGACCCCAACGCCACCTTCAACATAA
Protein Sequence MPQTKKPSSSFRLQTKYVFLTYPRCSSDAESLRDFLWEKLSRFAIFFIAVATELHQDGTPHLHCLLQLDKRSNIRDPSFFDFQGNHPNIQPAKNSEQVLDYISKDGSVITRGDFRKHKVSPTKSDDRWRTIIQTATTKEDYLEMIKTEFPHEWATKLQWLEYSANKLFPDIEPPYSSPFPNEFLQCDEEITEWLNRDLYVVSVESYHLLHPNLSIQTATEDLIWMDEYTRNPNNSNTEEDPSTSADQLVPERHPGQEASEDTITSTEESTSQPMTPTPPST

References More References in PubMed

1

Two novel mastreviruses from chickpea (Cicer arietinum) in Australia.

Thomas JE, et al.  Arch Virol. 2010 Nov;155(11):1777-88. doi: 10.1007/s00705-010-0763-4. Epub 2010 Aug 24.

PMID: 20734091
2

Viromes of Ten Alfalfa Plants in Australia Reveal Diverse Known Viruses and a Novel RNA Virus.

Samarfard S, et al.  Pathogens. 2020 Mar 13;9(3):214. doi: 10.3390/pathogens9030214.

PMID: 32183134