Chenopodium leaf curl virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_002821805.1 |
| Isolate | USA: Florida, Citra |
| Release date | 2018/8/25 |
| Submitter | Ng,T.F., Duffy,S., Polston,J.E., Bixby,E., Vallad,G.E., Breitbart,M., Ng,T.F.F., Vallad,G. |
| Host | |
| Vector | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_038440
Gene Information
| NCBI Accession | YP_009506378.1 |
|---|---|
| Location | 194-637 |
| Gene Name | AC5 |
| Protein Name | AC5 protein |
| Coding Region | ATGGGAGTACCATACGGTCTTCGATCCCTAACCAACCAGAACATAACACTGTTCGTGTGGTTCTTCAACTTGATGTTCTCATCCATCCATATCTTGCCCAGAATGTACACGGACTTAACACAGAATCGCTTACCAACACGGTGGGTTATACCATTACCCCGTGTCACGTCGGATATGCATATCACTTTCCCAGTATGTGACACATCATGTCGCTGTTCGAATGACTGGACTTTACAAGGCCCTTCACACCCTCTGGGCACATCTGGAGTACGGATCATCCGGTATATCCTGGGCTTCCTGTACATGGGCCTGTTCACCCATTCAGTGGCCTTGTTAAATGTTGGCCCACTTCCTAGACGGGTAGAATATTTCGCATTTCGGCTAACCTTCGAGGTTCCCGCCAGTAATCGCCATGGGGCTTCCCTCTTAGGCATTTTGAGTTAA |
| Protein Sequence | MGVPYGLRSLTNQNITLFVWFFNLMFSSIHILPRMYTDLTQNRLPTRWVIPLPRVTSDMHITFPVCDTSCRCSNDWTLQGPSHPLGTSGVRIIRYILGFLYMGLFTHSVALLNVGPLPRRVEYFAFRLTFEVPASNRHGASLLGILS |
| NCBI Accession | YP_009506379.1 |
|---|---|
| Location | 204-959 |
| Gene Name | CP/AV1 |
| Protein Name | coat protein |
| Coding Region | ATGCCTAAGAGGGAAGCCCCATGGCGATTACTGGCGGGAACCTCGAAGGTTAGCCGAAATGCGAAATATTCTACCCGTCTAGGAAGTGGGCCAACATTTAACAAGGCCACTGAATGGGTGAACAGGCCCATGTACAGGAAGCCCAGGATATACCGGATGATCCGTACTCCAGATGTGCCCAGAGGGTGTGAAGGGCCTTGTAAAGTCCAGTCATTCGAACAGCGACATGATGTGTCACATACTGGGAAAGTGATATGCATATCCGACGTGACACGGGGTAATGGTATAACCCACCGTGTTGGTAAGCGATTCTGTGTTAAGTCCGTGTACATTCTGGGCAAGATATGGATGGATGAGAACATCAAGTTGAAGAACCACACGAACAGTGTTATGTTCTGGTTGGTTAGGGATCGAAGACCGTATGGTACTCCCATGGATTTCGGTCAGGTGTTCAACATGTTCGACAATGAGCCTAGCACTGCTACTGTGAAGAACGATCTACGTGATCGTTATCAGGTCATGCACCGGTTCTATGGCAAGGTTACGGGTGGACAGTATGCCAGCAACGAGCAGGCTATAGTCAAGCGCTTCTGGAAGGTCAACAATCATGTGGTGTACAATCACCAGGAAGCTGGGAAGTACGAGAACCACACGGAGAACGCGCTATTATTGTATATGGCATGTACTCATGCCTCTAATCCTGTATATGCAACTTTGAAGATCCGAATCTATTTCTATGATTCGATTATGAATTAA |
| Protein Sequence | MPKREAPWRLLAGTSKVSRNAKYSTRLGSGPTFNKATEWVNRPMYRKPRIYRMIRTPDVPRGCEGPCKVQSFEQRHDVSHTGKVICISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHRFYGKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN |
| NCBI Accession | YP_009506380.1 |
|---|---|
| Location | 956-1354 |
| Gene Name | REn/AC3 |
| Protein Name | replication enhancer |
| Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCGGAGAATGGCGTTTTTATATGGGAGATCGAAAATCCCCTCTATTTCAGGATAGACAGGGTGGAGGAACCGGCGTACACGTCCAGCAGAGTGTACCACATCCAGATCAGGGCAAACCACAACCTGCGGAGAGTGTTGGATCTCCACAAGGCCTTCTTAACCTTCCAAGTCTGGACGACTTCTCTGACAGCTTCTGGGACGACGTACTTAAATAGATTTAGGCAATTAGTTAATATGTATTTAGATCAGTTAGGCGTTATTTCCATAAACAATGTAATTAGGGCTGCTAGTTTTGCGACAGACCGGTCTTATGTAACTAATGTGCTCTTTAGACATTCAATAAAATTCAAAATTTATTAA |
| Protein Sequence | MDSRTGELITAAQAENGVFIWEIENPLYFRIDRVEEPAYTSSRVYHIQIRANHNLRRVLDLHKAFLTFQVWTTSLTASGTTYLNRFRQLVNMYLDQLGVISINNVIRAASFATDRSYVTNVLFRHSIKFKIY |
| NCBI Accession | YP_009506381.1 |
|---|---|
| Location | 1101-1490 |
| Gene Name | TrAP/AC2 |
| Protein Name | transcription activator |
| Coding Region | ATGCGGTCTTCATCACCCTCACATCCCCCCTCTATCAAGATAGCGCACAAGATAGCCAAGAAGAGGGGGATCAGGAGGCGCAGGATTGATTTAGATTGCGGGTGCTCCATATACGTGCATATTGGCTGTTCCGGGCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCGGAGAATGGCGTTTTTATATGGGAGATCGAAAATCCCCTCTATTTCAGGATAGACAGGGTGGAGGAACCGGCGTACACGTCCAGCAGAGTGTACCACATCCAGATCAGGGCAAACCACAACCTGCGGAGAGTGTTGGATCTCCACAAGGCCTTCTTAACCTTCCAAGTCTGGACGACTTCTCTGACAGCTTCTGGGACGACGTACTTAAATAG |
| Protein Sequence | MRSSSPSHPPSIKIAHKIAKKRGIRRRRIDLDCGCSIYVHIGCSGHGFTHRGTHHCSSSGEWRFYMGDRKSPLFQDRQGGGTGVHVQQSVPHPDQGKPQPAESVGSPQGLLNLPSLDDFSDSFWDDVLK |
| NCBI Accession | YP_009506382.1 |
|---|---|
| Location | 1402-2481 |
| Gene Name | Rep/AC1 |
| Protein Name | replication initiator protein |
| Coding Region | ATGCCACGAAACCCTAATTCCTTTCGTATCCAAGCTAGAAATATTTTCTTAACATATCCCCAGTGCGACATACCCAAAGATGAAGCTCTTCTCTTGCTTCAATCCCTGCCTTGGTCAGTCGTCAAACCTACATACATCAGAGTCGCAAGAGAGGAACACGCAGATGGGTTCCCTCATTTACACTGTCTCATCCAACTCTCCGGTAAGTCCAACATCAAGGATGCTAGATTTTTCGACCTCACTCACCCCAGAAGGTCTGCCGGATTTCACCCGAACGTCCAAGGCGCTAAAGACACCAACGCCGTCAAGAATTACATCACCAAGGAAGGTGATTATTGTGAATCCGGACAATACAAAGTGTCTGGGGGTTCAAAGGCGAATAAAGACGACGTGTATCACAACGCTGTTAATGCAACTACTGCGAGAGAGGCTCTCGACATTATAAAGGCGGGAGACCCAAAGACGTTTATCGTTAGCTATCACAACGTCAAGGCTAACATTGAGCGCCTATTTCACAAACCTCCTGAACGATGGGTTCCTCCGTTTCCTCTCTCGTCGTTCACTAACGTTCCAGTAGATATGCAAGCTTGGGCGGATGATTACTTCGGAAACGGCGTCGCTGCGCGGCCAGAAAGACCGATAAGTATAATCGTCGAAGGTGACTCAAGGACGGGAAAGACGATGTGGGCTCGTGCCTTGGGTCCACATAATTATCTCAGTGGTCACCTTGATTTCAATGCCCGGGTTTATTCTAACGAAGTGGAGTATAACGTCATCGATGACGTCGCACCGCAATATCTAAAATTAAAGCACTGGAAAGAACTTCTGGGGGCCCAGAAGGACTGGCAATCAAACTGCAAGTACGGCAGGCCAGTTCAAATTAAAGGCGGGATACCGTCTATCGTGCTTTGCAATCCTGGTGAGGGTGCCAGTTATAAGGAGTTCTTGGACAAAATTGAAAACACATCACTAAAGAACTGGACAATAAAAAATGCGGTCTTCATCACCCTCACATCCCCCCTCTATCAAGATAGCGCACAAGATAGCCAAGAAGAGGGGGATCAGGAGGCGCAGGATTGA |
| Protein Sequence | MPRNPNSFRIQARNIFLTYPQCDIPKDEALLLLQSLPWSVVKPTYIRVAREEHADGFPHLHCLIQLSGKSNIKDARFFDLTHPRRSAGFHPNVQGAKDTNAVKNYITKEGDYCESGQYKVSGGSKANKDDVYHNAVNATTAREALDIIKAGDPKTFIVSYHNVKANIERLFHKPPERWVPPFPLSSFTNVPVDMQAWADDYFGNGVAARPERPISIIVEGDSRTGKTMWARALGPHNYLSGHLDFNARVYSNEVEYNVIDDVAPQYLKLKHWKELLGAQKDWQSNCKYGRPVQIKGGIPSIVLCNPGEGASYKEFLDKIENTSLKNWTIKNAVFITLTSPLYQDSAQDSQEEGDQEAQD |
| NCBI Accession | YP_009506383.1 |
|---|---|
| Location | 2037-2402 |
| Gene Name | AC4 |
| Protein Name | AC4 protein |
| Coding Region | ATGAAGCTCTTCTCTTGCTTCAATCCCTGCCTTGGTCAGTCGTCAAACCTACATACATCAGAGTCGCAAGAGAGGAACACGCAGATGGGTTCCCTCATTTACACTGTCTCATCCAACTCTCCGGTAAGTCCAACATCAAGGATGCTAGATTTTTCGACCTCACTCACCCCAGAAGGTCTGCCGGATTTCACCCGAACGTCCAAGGCGCTAAAGACACCAACGCCGTCAAGAATTACATCACCAAGGAAGGTGATTATTGTGAATCCGGACAATACAAAGTGTCTGGGGGTTCAAAGGCGAATAAAGACGACGTGTATCACAACGCTGTTAATGCAACTACTGCGAGAGAGGCTCTCGACATTATAA |
| Protein Sequence | MKLFSCFNPCLGQSSNLHTSESQERNTQMGSLIYTVSSNSPVSPTSRMLDFSTSLTPEGLPDFTRTSKALKTPTPSRITSPRKVIIVNPDNTKCLGVQRRIKTTCITTLLMQLLRERLSTL |
References More References in PubMed
| 1 |
Squash leaf curl virus (SLCV): a serious disease threatening cucurbits production in Palestine. Ali-Shtayeh MS, et al. Virus Genes. 2014 Apr;48(2):320-8. doi: 10.1007/s11262-013-1012-1. Epub 2013 Nov 21. PMID: 24258392 |
|---|---|
| 2 |
Interspecies Recombination-Led Speciation of a Novel Geminivirus in Pakistan. Lal A, et al. Viruses. 2022 Sep 30;14(10):2166. doi: 10.3390/v14102166. PMID: 36298721 |
| 3 |
Current Status and New Natural Hosts of Tomato yellow leaf curl virus (TYLCV) in Spain. Jordá C, et al. Plant Dis. 2001 Apr;85(4):445. doi: 10.1094/PDIS.2001.85.4.445C. PMID: 30831991 |
| 4 |
Identification of an emerging cucumber virus in Taiwan using Oxford nanopore sequencing technology. Dong ZX, et al. Plant Methods. 2022 Dec 22;18(1):143. doi: 10.1186/s13007-022-00976-x. PMID: 36550551 |
| 5 |
Chaudhary P, et al. Virusdisease. 2023 Mar;34(1):56-75. doi: 10.1007/s13337-022-00801-y. Epub 2022 Dec 17. PMID: 37009255 |
| 6 |
First Report of Tomato Yellow Leaf Curl Geminivirus in Morocco. Peterschmitt M, et al. Plant Dis. 1999 Nov;83(11):1074. doi: 10.1094/PDIS.1999.83.11.1074C. PMID: 30841294 |
| 7 |
Occurrence and Characterization of Bean common mosaic virus Strain NL1 in Iowa. Martin K, et al. Plant Dis. 2014 Nov;98(11):1593. doi: 10.1094/PDIS-07-14-0673-PDN. PMID: 30699810 |
| 8 |
First Report of Tobacco Streak Ilarvirus from Honeysuckle. Waterworth HE. Plant Dis. 1998 Dec;82(12):1402. doi: 10.1094/PDIS.1998.82.12.1402B. PMID: 30845481 |
| 9 |
Batuman O, et al. Plant Dis. 2009 May;93(5):546. doi: 10.1094/PDIS-93-5-0546C. PMID: 30764155 |
| 10 |
First report of occurrence of two viruses on pea field in Iran. Esfandiari N, et al. Commun Agric Appl Biol Sci. 2005;70(3):411-6. PMID: 16637207 |