Grapevine geminivirus A

Basic Information

Genus Maldovirus
NCBI Assembly GCF_001766605.1
Isolate Israel
Release date 2016/10/15
Submitter Al Rwahnih,M., Alabi,O.J., Westrick,N.M., Golino,D., Rowhani,A., Alabi,O., Westrick,N.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_031340
ACCGGATGGCCGCCGATTTTTTTTCCCCTTAATCGTGGCCGTTGATTCAAATTAAAGAGAAAGGGTAAAGTCCTTTGTGCTTTCTGACTCAAAAGCCATTCACAAACTTAACCTCCTTATTAACCATTTAAATTTCAAATTCAAATTAGACCCCGCTCCCTGTCACTATCTAGGTCCACTTATAAGCTCCTTTGTCTTCACGTGGGTAATTGTCCTTTGTGTCGGTTATGTGGTCCCACGCGGTTGCTATTAGGAACCTCACGTACTTGGGGCCTAAGTTATTATAAATTTGGGCTTAAGTCATTGGGCCTGATGTGGTTGGTGTTTATGGATCGCCTCTATTCATCGTTCCAAGATAAGAGGCTTCATCCTGCTGAAATATTGCCTCACGTGACCCAGTGGATCTGTGAGAAGGGAACGGCCCAACAACTCATAGATTGGATCCATGGACTTCAATCCGAGAAAGAGGAAATCTTTCGCACCCTTGACGCCTGCTCAGTTGGCCCGTCAGAGGAGATGGAGGGCTTTGGTGGCCCAAGGGGCCAAGAGAAGGTTGACCTATCCCTCACTTTATCGTCCCCAACTGATGAACGTCCGCAGGTCAAGTCAGTCAGTATATCCTGACAAGGGATACCATGATGACGAGGACCATTGGGAAGGGTTCACCATGTCTGAGGGTAAGGCTACCTATGTATCTATGCCTCATTTGGGCCAGGGTGCTAGTCAACGTCATACCAGTAAGATCAAGTTGTGGTCCATATCTGTTCGTGGGTCACTACATGTTTTAAATTGTACTAATCCGGAGACGATCTCGGCCCAAGTCATTTTGGTTTGGGCCCATAGGCCCGAAGGTGGATCTGTTCCAGGCTTTTATGATCTGTTTACTGGTGGAGGGAGTATGAATGATCAGCATAACCCCACATGTGCGAAGCTCAAGCATTCGATGACCAAGTCCTACCACGTGCTGAGTCGTCGCACGTTCCAATTGACTCCGTATACGACATATTCATCTGGTCGTAATCGAGTCAATTTTCAGATATACAAGGTATTCCGAGGTCGGAATACAAAATATGTAACCTTTGGTGAAGACAGTACTGGAGGCTCCTACTCTGATATTAAGTATGGAGGCCTGTTTTATTTTATTAGGTTTATTAGTTCGGATGCAGGTGCAAAATTAGAAGGAGATTGGAATTGTAGAATAATATATTATCATTAATATAAATTGAATTTTACATCTGTTGAGTACAATTCGAAACTTGAAATCCAACTGGATTTTAACATAAATTCATTAATACCTAATGCTAATGTTTTACATGAAATTACACCAACAGAATCGAAGTAACTTAAAATTCTATCCCTAATTCTAATTTGTAAAGAGATCAGCCCAAATGTTTTCAAGGTCGTCCAGACCCTGTATGTTATCCAGCATTTGTGTAGCCCCAAAGCTTTCCTCATGTTGTGATTTGCTCTGAACTGTATCTTGAATCCCTTCCCTTTGGGAAGGAATATGTCCCAACTCTGTATGATCGTTACATACAGAGGATTCTTCAAAGTCCATGAGTATACTCCTGTCTGGGTTTGCTGCGATGTAAGTGACTCCCCGGTGCGTGAATCCAACACCCTGACATGGCCGACAGGCATAGATGATACAATTGCACTGGCAATTGATCCTTCTTCTTCTTCTAGCTGGACTGTCTGTCTTGGCTTGTTTGTGCAGTATCTTCTGAGGCACGAGGTGATTGTGGTTTGAAGAGGGGCTCCTGCAGGGAGACGAAAATTGCATTTTTCAGTGCCCAATTTTTTAGTGCCGCATTCTTCTCCTCATCCAGGAATTCTTTATAGGAGGAATTAGGACCAGGATTGCAAAGGAAGATTGAGGGCATTGTCTTTTCCACGTGGATCGGCTTTCCGTATTTTGTGTTGGATTGCCAGCCCACCTGGGCCCCCATGAATTCTTTAAAATGTTTTAAATAATGTGGGTCTACATCATCTATTATATTATAATCTGCATCTAAACTAAATACCTTATCGTTTAAATCTAAATGGCCACTTAAATAATTATGTTTTCCTAGTGCCCTAGCCCATAATGTTTTTCCCGTCCTTGAATCTCCCTCTAATACTAATGATTTAGGTCTTAATGGCCCCGCAGGGGCATTCTCTCTCAACTCACTAGGGAACGCAGTGGACCCTAACCCACTCTCCCATACCCAATCCCATAATTCATCTGGGACATTATTAAAACTATCTAATGAAAATGGAGGTGTGTATTCCTTAGGGGGTGTTTTAAAAATGCGACCTAAGTTCCCAACTAAATGATGATAATGCAAAATATAATCTTTTGGGGCTTTTTCCTTTAAAATTTGCAATGCCTGGTCCTTACCTCCTGAATTTAACGCCTCAGCATAAGCGTCGTTAGCCGATTGCACACCTCCTCTAGATGATCGGCCGTCGATCTGAAATTCTCCCCAGGAGATGACATCTCCGTCCTTCTCGATATAGGACTTGACGTCGGACGAGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGATCGGCTTGGGGATACCAGGTCGAAGAATCGTTGATTTGTCGTCTGGAATTTCCCCTTGAATTGAAGCAGTGCATGCAGATGCGGTTGCCCATCTTGATGGGATTCTGCTGAGACTTTAATGAAAACTGGAGGAATTGGGTAATGAAAGGCTTTGAGTTGCTCTAATGCAGACTCTTTGGATATATGGCACTGGGGATATGTTAGGAAAATGTTCTTGGCATTAAGCCTGAACGAAGATGGCTTACGTGGCATATTGGCTATCGGGGTGAGCTCTATAAGTCCATCTAAGGGGGTGAATGGGGTGAAATATATACCTCTCCCAGAGCTAGTAGCGGCCATCCTATAATATT

Gene Information

NCBI Accession YP_009305424.1
Location 313-624
Protein Name Pre-CP/V2
Coding Region ATGTGGTTGGTGTTTATGGATCGCCTCTATTCATCGTTCCAAGATAAGAGGCTTCATCCTGCTGAAATATTGCCTCACGTGACCCAGTGGATCTGTGAGAAGGGAACGGCCCAACAACTCATAGATTGGATCCATGGACTTCAATCCGAGAAAGAGGAAATCTTTCGCACCCTTGACGCCTGCTCAGTTGGCCCGTCAGAGGAGATGGAGGGCTTTGGTGGCCCAAGGGGCCAAGAGAAGGTTGACCTATCCCTCACTTTATCGTCCCCAACTGATGAACGTCCGCAGGTCAAGTCAGTCAGTATATCCTGA
Protein Sequence MWLVFMDRLYSSFQDKRLHPAEILPHVTQWICEKGTAQQLIDWIHGLQSEKEEIFRTLDACSVGPSEEMEGFGGPRGQEKVDLSLTLSSPTDERPQVKSVSIS

NCBI Accession YP_009305425.1
Location 446-1216
Protein Name CP/V1
Coding Region ATGGACTTCAATCCGAGAAAGAGGAAATCTTTCGCACCCTTGACGCCTGCTCAGTTGGCCCGTCAGAGGAGATGGAGGGCTTTGGTGGCCCAAGGGGCCAAGAGAAGGTTGACCTATCCCTCACTTTATCGTCCCCAACTGATGAACGTCCGCAGGTCAAGTCAGTCAGTATATCCTGACAAGGGATACCATGATGACGAGGACCATTGGGAAGGGTTCACCATGTCTGAGGGTAAGGCTACCTATGTATCTATGCCTCATTTGGGCCAGGGTGCTAGTCAACGTCATACCAGTAAGATCAAGTTGTGGTCCATATCTGTTCGTGGGTCACTACATGTTTTAAATTGTACTAATCCGGAGACGATCTCGGCCCAAGTCATTTTGGTTTGGGCCCATAGGCCCGAAGGTGGATCTGTTCCAGGCTTTTATGATCTGTTTACTGGTGGAGGGAGTATGAATGATCAGCATAACCCCACATGTGCGAAGCTCAAGCATTCGATGACCAAGTCCTACCACGTGCTGAGTCGTCGCACGTTCCAATTGACTCCGTATACGACATATTCATCTGGTCGTAATCGAGTCAATTTTCAGATATACAAGGTATTCCGAGGTCGGAATACAAAATATGTAACCTTTGGTGAAGACAGTACTGGAGGCTCCTACTCTGATATTAAGTATGGAGGCCTGTTTTATTTTATTAGGTTTATTAGTTCGGATGCAGGTGCAAAATTAGAAGGAGATTGGAATTGTAGAATAATATATTATCATTAA
Protein Sequence MDFNPRKRKSFAPLTPAQLARQRRWRALVAQGAKRRLTYPSLYRPQLMNVRRSSQSVYPDKGYHDDEDHWEGFTMSEGKATYVSMPHLGQGASQRHTSKIKLWSISVRGSLHVLNCTNPETISAQVILVWAHRPEGGSVPGFYDLFTGGGSMNDQHNPTCAKLKHSMTKSYHVLSRRTFQLTPYTTYSSGRNRVNFQIYKVFRGRNTKYVTFGEDSTGGSYSDIKYGGLFYFIRFISSDAGAKLEGDWNCRIIYYH

NCBI Accession YP_009305426.1
Location 1213-1641
Protein Name Ren/C3
Coding Region ATGCCTGTCGGCCATGTCAGGGTGTTGGATTCACGCACCGGGGAGTCACTTACATCGCAGCAAACCCAGACAGGAGTATACTCATGGACTTTGAAGAATCCTCTGTATGTAACGATCATACAGAGTTGGGACATATTCCTTCCCAAAGGGAAGGGATTCAAGATACAGTTCAGAGCAAATCACAACATGAGGAAAGCTTTGGGGCTACACAAATGCTGGATAACATACAGGGTCTGGACGACCTTGAAAACATTTGGGCTGATCTCTTTACAAATTAGAATTAGGGATAGAATTTTAAGTTACTTCGATTCTGTTGGTGTAATTTCATGTAAAACATTAGCATTAGGTATTAATGAATTTATGTTAAAATCCAGTTGGATTTCAAGTTTCGAATTGTACTCAACAGATGTAAAATTCAATTTATATTAA
Protein Sequence MPVGHVRVLDSRTGESLTSQQTQTGVYSWTLKNPLYVTIIQSWDIFLPKGKGFKIQFRANHNMRKALGLHKCWITYRVWTTLKTFGLISLQIRIRDRILSYFDSVGVISCKTLALGINEFMLKSSWISSFELYSTDVKFNLY

NCBI Accession YP_009305427.1
Location 1364-1783
Protein Name TrAP/C2
Coding Region ATGCAATTTTCGTCTCCCTGCAGGAGCCCCTCTTCAAACCACAATCACCTCGTGCCTCAGAAGATACTGCACAAACAAGCCAAGACAGACAGTCCAGCTAGAAGAAGAAGAAGGATCAATTGCCAGTGCAATTGTATCATCTATGCCTGTCGGCCATGTCAGGGTGTTGGATTCACGCACCGGGGAGTCACTTACATCGCAGCAAACCCAGACAGGAGTATACTCATGGACTTTGAAGAATCCTCTGTATGTAACGATCATACAGAGTTGGGACATATTCCTTCCCAAAGGGAAGGGATTCAAGATACAGTTCAGAGCAAATCACAACATGAGGAAAGCTTTGGGGCTACACAAATGCTGGATAACATACAGGGTCTGGACGACCTTGAAAACATTTGGGCTGATCTCTTTACAAATTAG
Protein Sequence MQFSSPCRSPSSNHNHLVPQKILHKQAKTDSPARRRRRINCQCNCIIYACRPCQGVGFTHRGVTYIAANPDRSILMDFEESSVCNDHTELGHIPSQREGIQDTVQSKSQHEESFGATQMLDNIQGLDDLENIWADLFTN

NCBI Accession YP_009305428.1
Location 1683-2894
Protein Name Rep/C1
Coding Region ATGGCCGCTACTAGCTCTGGGAGAGGTATATATTTCACCCCATTCACCCCCTTAGATGGACTTATAGAGCTCACCCCGATAGCCAATATGCCACGTAAGCCATCTTCGTTCAGGCTTAATGCCAAGAACATTTTCCTAACATATCCCCAGTGCCATATATCCAAAGAGTCTGCATTAGAGCAACTCAAAGCCTTTCATTACCCAATTCCTCCAGTTTTCATTAAAGTCTCAGCAGAATCCCATCAAGATGGGCAACCGCATCTGCATGCACTGCTTCAATTCAAGGGGAAATTCCAGACGACAAATCAACGATTCTTCGACCTGGTATCCCCAAGCCGATCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCTCGTCCGACGTCAAGTCCTATATCGAGAAGGACGGAGATGTCATCTCCTGGGGAGAATTTCAGATCGACGGCCGATCATCTAGAGGAGGTGTGCAATCGGCTAACGACGCTTATGCTGAGGCGTTAAATTCAGGAGGTAAGGACCAGGCATTGCAAATTTTAAAGGAAAAAGCCCCAAAAGATTATATTTTGCATTATCATCATTTAGTTGGGAACTTAGGTCGCATTTTTAAAACACCCCCTAAGGAATACACACCTCCATTTTCATTAGATAGTTTTAATAATGTCCCAGATGAATTATGGGATTGGGTATGGGAGAGTGGGTTAGGGTCCACTGCGTTCCCTAGTGAGTTGAGAGAGAATGCCCCTGCGGGGCCATTAAGACCTAAATCATTAGTATTAGAGGGAGATTCAAGGACGGGAAAAACATTATGGGCTAGGGCACTAGGAAAACATAATTATTTAAGTGGCCATTTAGATTTAAACGATAAGGTATTTAGTTTAGATGCAGATTATAATATAATAGATGATGTAGACCCACATTATTTAAAACATTTTAAAGAATTCATGGGGGCCCAGGTGGGCTGGCAATCCAACACAAAATACGGAAAGCCGATCCACGTGGAAAAGACAATGCCCTCAATCTTCCTTTGCAATCCTGGTCCTAATTCCTCCTATAAAGAATTCCTGGATGAGGAGAAGAATGCGGCACTAAAAAATTGGGCACTGAAAAATGCAATTTTCGTCTCCCTGCAGGAGCCCCTCTTCAAACCACAATCACCTCGTGCCTCAGAAGATACTGCACAAACAAGCCAAGACAGACAGTCCAGCTAG
Protein Sequence MAATSSGRGIYFTPFTPLDGLIELTPIANMPRKPSSFRLNAKNIFLTYPQCHISKESALEQLKAFHYPIPPVFIKVSAESHQDGQPHLHALLQFKGKFQTTNQRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIEKDGDVISWGEFQIDGRSSRGGVQSANDAYAEALNSGGKDQALQILKEKAPKDYILHYHHLVGNLGRIFKTPPKEYTPPFSLDSFNNVPDELWDWVWESGLGSTAFPSELRENAPAGPLRPKSLVLEGDSRTGKTLWARALGKHNYLSGHLDLNDKVFSLDADYNIIDDVDPHYLKHFKEFMGAQVGWQSNTKYGKPIHVEKTMPSIFLCNPGPNSSYKEFLDEEKNAALKNWALKNAIFVSLQEPLFKPQSPRASEDTAQTSQDRQSS

NCBI Accession YP_009305429.1
Location 2390-2647
Protein Name HAP/C4
Coding Region ATGGGCAACCGCATCTGCATGCACTGCTTCAATTCAAGGGGAAATTCCAGACGACAAATCAACGATTCTTCGACCTGGTATCCCCAAGCCGATCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCTCGTCCGACGTCAAGTCCTATATCGAGAAGGACGGAGATGTCATCTCCTGGGGAGAATTTCAGATCGACGGCCGATCATCTAGAGGAGGTGTGCAATCGGCTAACGACGCTTATGCTGAGGCGTTAA
Protein Sequence MGNRICMHCFNSRGNSRRQINDSSTWYPQADQHISIQTFRELNPRPTSSPISRRTEMSSPGENFRSTADHLEEVCNRLTTLMLRR

References More References in PubMed

1

Molecular Characterization and Genomic Function of Grapevine Geminivirus A.

Sun S, et al.  Front Microbiol. 2020 Sep 2;11:555194. doi: 10.3389/fmicb.2020.555194. eCollection 2020.

PMID: 32983075
2

Development of Agrobacterium tumefaciens Infiltration of Infectious Clones of Grapevine Geminivirus A Directly into Greenhouse-Grown Grapevine and Nicotiana benthamiana Plants.

Kuo YW, et al.  Phytopathology. 2022 Aug;112(8):1603-1609. doi: 10.1094/PHYTO-01-22-0015-R. Epub 2022 Jun 17.

PMID: 35713600
3

Development and application of crude sap-based recombinase polymerase amplification assay for the detection and occurrence of grapevine geminivirus A in Indian grapevine cultivars.

Kishan G, et al.  Front Plant Sci. 2023 Mar 9;14:1151471. doi: 10.3389/fpls.2023.1151471. eCollection 2023.

PMID: 36968414
4

Construction of an Infectious DNA Clone of Grapevine Geminivirus A Isolate GN and Its Biological Activity in Plants Analyzed Using an Efficient and Simple Inoculation Method.

Liu C, et al.  Plants (Basel). 2024 Jun 8;13(12):1601. doi: 10.3390/plants13121601.

PMID: 38931032
5

Association of grapevine geminivirus a isolate QN with upward leaf curling, necrosis, chlorosis, and malformation symptoms in two grapevine cultivars.

Liu C, et al.  Arch Virol. 2025 May 15;170(6):125. doi: 10.1007/s00705-025-06318-1.

PMID: 40372509
6

Grapevine red blotch disease: A comprehensive Q&A guide.

Krenz B, et al.  PLoS Pathog. 2023 Oct 12;19(10):e1011671. doi: 10.1371/journal.ppat.1011671. eCollection 2023 Oct.

PMID: 37824437
7

Prunus geminivirus A: A Novel Grablovirus Infecting Prunus spp.

Al Rwahnih M, et al.  Plant Dis. 2018 Jul;102(7):1246-1253. doi: 10.1094/PDIS-09-17-1486-RE. Epub 2018 Apr 30.

PMID: 30673580
8

Description of a Novel Monopartite Geminivirus and Its Defective Subviral Genome in Grapevine.

Al Rwahnih M, et al.  Phytopathology. 2017 Feb;107(2):240-251. doi: 10.1094/PHYTO-07-16-0282-R. Epub 2016 Nov 16.

PMID: 27670772
9

Complete nucleotide sequence of a new geminivirus isolated from Vitis vinifera in India: a symptomless host of Grapevine red blotch virus.

Marwal A, et al.  Virusdisease. 2019 Mar;30(1):106-111. doi: 10.1007/s13337-018-0477-x. Epub 2018 Jul 17.

PMID: 31143838
10

A NitroPure Nitrocellulose Membrane-Based Grapevine Virus Sampling Kit: Development and Deployment to Survey Japanese Vineyards and Nurseries.

Nita M, et al.  Viruses. 2023 Oct 17;15(10):2102. doi: 10.3390/v15102102.

PMID: 37896878