Grapevine geminivirus A
Basic Information
| Genus |
Maldovirus
|
| NCBI Assembly |
GCF_001766605.1 |
| Isolate |
Israel |
| Release date |
2016/10/15 |
| Submitter |
Al Rwahnih,M., Alabi,O.J., Westrick,N.M., Golino,D., Rowhani,A., Alabi,O., Westrick,N. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCCGATTTTTTTTCCCCTTAATCGTGGCCGTTGATTCAAATTAAAGAGAAAGGGTAAAGTCCTTTGTGCTTTCTGACTCAAAAGCCATTCACAAACTTAACCTCCTTATTAACCATTTAAATTTCAAATTCAAATTAGACCCCGCTCCCTGTCACTATCTAGGTCCACTTATAAGCTCCTTTGTCTTCACGTGGGTAATTGTCCTTTGTGTCGGTTATGTGGTCCCACGCGGTTGCTATTAGGAACCTCACGTACTTGGGGCCTAAGTTATTATAAATTTGGGCTTAAGTCATTGGGCCTGATGTGGTTGGTGTTTATGGATCGCCTCTATTCATCGTTCCAAGATAAGAGGCTTCATCCTGCTGAAATATTGCCTCACGTGACCCAGTGGATCTGTGAGAAGGGAACGGCCCAACAACTCATAGATTGGATCCATGGACTTCAATCCGAGAAAGAGGAAATCTTTCGCACCCTTGACGCCTGCTCAGTTGGCCCGTCAGAGGAGATGGAGGGCTTTGGTGGCCCAAGGGGCCAAGAGAAGGTTGACCTATCCCTCACTTTATCGTCCCCAACTGATGAACGTCCGCAGGTCAAGTCAGTCAGTATATCCTGACAAGGGATACCATGATGACGAGGACCATTGGGAAGGGTTCACCATGTCTGAGGGTAAGGCTACCTATGTATCTATGCCTCATTTGGGCCAGGGTGCTAGTCAACGTCATACCAGTAAGATCAAGTTGTGGTCCATATCTGTTCGTGGGTCACTACATGTTTTAAATTGTACTAATCCGGAGACGATCTCGGCCCAAGTCATTTTGGTTTGGGCCCATAGGCCCGAAGGTGGATCTGTTCCAGGCTTTTATGATCTGTTTACTGGTGGAGGGAGTATGAATGATCAGCATAACCCCACATGTGCGAAGCTCAAGCATTCGATGACCAAGTCCTACCACGTGCTGAGTCGTCGCACGTTCCAATTGACTCCGTATACGACATATTCATCTGGTCGTAATCGAGTCAATTTTCAGATATACAAGGTATTCCGAGGTCGGAATACAAAATATGTAACCTTTGGTGAAGACAGTACTGGAGGCTCCTACTCTGATATTAAGTATGGAGGCCTGTTTTATTTTATTAGGTTTATTAGTTCGGATGCAGGTGCAAAATTAGAAGGAGATTGGAATTGTAGAATAATATATTATCATTAATATAAATTGAATTTTACATCTGTTGAGTACAATTCGAAACTTGAAATCCAACTGGATTTTAACATAAATTCATTAATACCTAATGCTAATGTTTTACATGAAATTACACCAACAGAATCGAAGTAACTTAAAATTCTATCCCTAATTCTAATTTGTAAAGAGATCAGCCCAAATGTTTTCAAGGTCGTCCAGACCCTGTATGTTATCCAGCATTTGTGTAGCCCCAAAGCTTTCCTCATGTTGTGATTTGCTCTGAACTGTATCTTGAATCCCTTCCCTTTGGGAAGGAATATGTCCCAACTCTGTATGATCGTTACATACAGAGGATTCTTCAAAGTCCATGAGTATACTCCTGTCTGGGTTTGCTGCGATGTAAGTGACTCCCCGGTGCGTGAATCCAACACCCTGACATGGCCGACAGGCATAGATGATACAATTGCACTGGCAATTGATCCTTCTTCTTCTTCTAGCTGGACTGTCTGTCTTGGCTTGTTTGTGCAGTATCTTCTGAGGCACGAGGTGATTGTGGTTTGAAGAGGGGCTCCTGCAGGGAGACGAAAATTGCATTTTTCAGTGCCCAATTTTTTAGTGCCGCATTCTTCTCCTCATCCAGGAATTCTTTATAGGAGGAATTAGGACCAGGATTGCAAAGGAAGATTGAGGGCATTGTCTTTTCCACGTGGATCGGCTTTCCGTATTTTGTGTTGGATTGCCAGCCCACCTGGGCCCCCATGAATTCTTTAAAATGTTTTAAATAATGTGGGTCTACATCATCTATTATATTATAATCTGCATCTAAACTAAATACCTTATCGTTTAAATCTAAATGGCCACTTAAATAATTATGTTTTCCTAGTGCCCTAGCCCATAATGTTTTTCCCGTCCTTGAATCTCCCTCTAATACTAATGATTTAGGTCTTAATGGCCCCGCAGGGGCATTCTCTCTCAACTCACTAGGGAACGCAGTGGACCCTAACCCACTCTCCCATACCCAATCCCATAATTCATCTGGGACATTATTAAAACTATCTAATGAAAATGGAGGTGTGTATTCCTTAGGGGGTGTTTTAAAAATGCGACCTAAGTTCCCAACTAAATGATGATAATGCAAAATATAATCTTTTGGGGCTTTTTCCTTTAAAATTTGCAATGCCTGGTCCTTACCTCCTGAATTTAACGCCTCAGCATAAGCGTCGTTAGCCGATTGCACACCTCCTCTAGATGATCGGCCGTCGATCTGAAATTCTCCCCAGGAGATGACATCTCCGTCCTTCTCGATATAGGACTTGACGTCGGACGAGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGATCGGCTTGGGGATACCAGGTCGAAGAATCGTTGATTTGTCGTCTGGAATTTCCCCTTGAATTGAAGCAGTGCATGCAGATGCGGTTGCCCATCTTGATGGGATTCTGCTGAGACTTTAATGAAAACTGGAGGAATTGGGTAATGAAAGGCTTTGAGTTGCTCTAATGCAGACTCTTTGGATATATGGCACTGGGGATATGTTAGGAAAATGTTCTTGGCATTAAGCCTGAACGAAGATGGCTTACGTGGCATATTGGCTATCGGGGTGAGCTCTATAAGTCCATCTAAGGGGGTGAATGGGGTGAAATATATACCTCTCCCAGAGCTAGTAGCGGCCATCCTATAATATT
Gene Information
|
NCBI Accession
|
YP_009305424.1
|
|
Location
|
313-624 |
|
Protein Name
|
Pre-CP/V2 |
|
Coding Region
|
ATGTGGTTGGTGTTTATGGATCGCCTCTATTCATCGTTCCAAGATAAGAGGCTTCATCCTGCTGAAATATTGCCTCACGTGACCCAGTGGATCTGTGAGAAGGGAACGGCCCAACAACTCATAGATTGGATCCATGGACTTCAATCCGAGAAAGAGGAAATCTTTCGCACCCTTGACGCCTGCTCAGTTGGCCCGTCAGAGGAGATGGAGGGCTTTGGTGGCCCAAGGGGCCAAGAGAAGGTTGACCTATCCCTCACTTTATCGTCCCCAACTGATGAACGTCCGCAGGTCAAGTCAGTCAGTATATCCTGA |
|
Protein Sequence
|
MWLVFMDRLYSSFQDKRLHPAEILPHVTQWICEKGTAQQLIDWIHGLQSEKEEIFRTLDACSVGPSEEMEGFGGPRGQEKVDLSLTLSSPTDERPQVKSVSIS |
|
NCBI Accession
|
YP_009305425.1
|
|
Location
|
446-1216 |
|
Protein Name
|
CP/V1 |
|
Coding Region
|
ATGGACTTCAATCCGAGAAAGAGGAAATCTTTCGCACCCTTGACGCCTGCTCAGTTGGCCCGTCAGAGGAGATGGAGGGCTTTGGTGGCCCAAGGGGCCAAGAGAAGGTTGACCTATCCCTCACTTTATCGTCCCCAACTGATGAACGTCCGCAGGTCAAGTCAGTCAGTATATCCTGACAAGGGATACCATGATGACGAGGACCATTGGGAAGGGTTCACCATGTCTGAGGGTAAGGCTACCTATGTATCTATGCCTCATTTGGGCCAGGGTGCTAGTCAACGTCATACCAGTAAGATCAAGTTGTGGTCCATATCTGTTCGTGGGTCACTACATGTTTTAAATTGTACTAATCCGGAGACGATCTCGGCCCAAGTCATTTTGGTTTGGGCCCATAGGCCCGAAGGTGGATCTGTTCCAGGCTTTTATGATCTGTTTACTGGTGGAGGGAGTATGAATGATCAGCATAACCCCACATGTGCGAAGCTCAAGCATTCGATGACCAAGTCCTACCACGTGCTGAGTCGTCGCACGTTCCAATTGACTCCGTATACGACATATTCATCTGGTCGTAATCGAGTCAATTTTCAGATATACAAGGTATTCCGAGGTCGGAATACAAAATATGTAACCTTTGGTGAAGACAGTACTGGAGGCTCCTACTCTGATATTAAGTATGGAGGCCTGTTTTATTTTATTAGGTTTATTAGTTCGGATGCAGGTGCAAAATTAGAAGGAGATTGGAATTGTAGAATAATATATTATCATTAA |
|
Protein Sequence
|
MDFNPRKRKSFAPLTPAQLARQRRWRALVAQGAKRRLTYPSLYRPQLMNVRRSSQSVYPDKGYHDDEDHWEGFTMSEGKATYVSMPHLGQGASQRHTSKIKLWSISVRGSLHVLNCTNPETISAQVILVWAHRPEGGSVPGFYDLFTGGGSMNDQHNPTCAKLKHSMTKSYHVLSRRTFQLTPYTTYSSGRNRVNFQIYKVFRGRNTKYVTFGEDSTGGSYSDIKYGGLFYFIRFISSDAGAKLEGDWNCRIIYYH |
|
NCBI Accession
|
YP_009305426.1
|
|
Location
|
1213-1641 |
|
Protein Name
|
Ren/C3 |
|
Coding Region
|
ATGCCTGTCGGCCATGTCAGGGTGTTGGATTCACGCACCGGGGAGTCACTTACATCGCAGCAAACCCAGACAGGAGTATACTCATGGACTTTGAAGAATCCTCTGTATGTAACGATCATACAGAGTTGGGACATATTCCTTCCCAAAGGGAAGGGATTCAAGATACAGTTCAGAGCAAATCACAACATGAGGAAAGCTTTGGGGCTACACAAATGCTGGATAACATACAGGGTCTGGACGACCTTGAAAACATTTGGGCTGATCTCTTTACAAATTAGAATTAGGGATAGAATTTTAAGTTACTTCGATTCTGTTGGTGTAATTTCATGTAAAACATTAGCATTAGGTATTAATGAATTTATGTTAAAATCCAGTTGGATTTCAAGTTTCGAATTGTACTCAACAGATGTAAAATTCAATTTATATTAA |
|
Protein Sequence
|
MPVGHVRVLDSRTGESLTSQQTQTGVYSWTLKNPLYVTIIQSWDIFLPKGKGFKIQFRANHNMRKALGLHKCWITYRVWTTLKTFGLISLQIRIRDRILSYFDSVGVISCKTLALGINEFMLKSSWISSFELYSTDVKFNLY |
|
NCBI Accession
|
YP_009305427.1
|
|
Location
|
1364-1783 |
|
Protein Name
|
TrAP/C2 |
|
Coding Region
|
ATGCAATTTTCGTCTCCCTGCAGGAGCCCCTCTTCAAACCACAATCACCTCGTGCCTCAGAAGATACTGCACAAACAAGCCAAGACAGACAGTCCAGCTAGAAGAAGAAGAAGGATCAATTGCCAGTGCAATTGTATCATCTATGCCTGTCGGCCATGTCAGGGTGTTGGATTCACGCACCGGGGAGTCACTTACATCGCAGCAAACCCAGACAGGAGTATACTCATGGACTTTGAAGAATCCTCTGTATGTAACGATCATACAGAGTTGGGACATATTCCTTCCCAAAGGGAAGGGATTCAAGATACAGTTCAGAGCAAATCACAACATGAGGAAAGCTTTGGGGCTACACAAATGCTGGATAACATACAGGGTCTGGACGACCTTGAAAACATTTGGGCTGATCTCTTTACAAATTAG |
|
Protein Sequence
|
MQFSSPCRSPSSNHNHLVPQKILHKQAKTDSPARRRRRINCQCNCIIYACRPCQGVGFTHRGVTYIAANPDRSILMDFEESSVCNDHTELGHIPSQREGIQDTVQSKSQHEESFGATQMLDNIQGLDDLENIWADLFTN |
|
NCBI Accession
|
YP_009305428.1
|
|
Location
|
1683-2894 |
|
Protein Name
|
Rep/C1 |
|
Coding Region
|
ATGGCCGCTACTAGCTCTGGGAGAGGTATATATTTCACCCCATTCACCCCCTTAGATGGACTTATAGAGCTCACCCCGATAGCCAATATGCCACGTAAGCCATCTTCGTTCAGGCTTAATGCCAAGAACATTTTCCTAACATATCCCCAGTGCCATATATCCAAAGAGTCTGCATTAGAGCAACTCAAAGCCTTTCATTACCCAATTCCTCCAGTTTTCATTAAAGTCTCAGCAGAATCCCATCAAGATGGGCAACCGCATCTGCATGCACTGCTTCAATTCAAGGGGAAATTCCAGACGACAAATCAACGATTCTTCGACCTGGTATCCCCAAGCCGATCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCTCGTCCGACGTCAAGTCCTATATCGAGAAGGACGGAGATGTCATCTCCTGGGGAGAATTTCAGATCGACGGCCGATCATCTAGAGGAGGTGTGCAATCGGCTAACGACGCTTATGCTGAGGCGTTAAATTCAGGAGGTAAGGACCAGGCATTGCAAATTTTAAAGGAAAAAGCCCCAAAAGATTATATTTTGCATTATCATCATTTAGTTGGGAACTTAGGTCGCATTTTTAAAACACCCCCTAAGGAATACACACCTCCATTTTCATTAGATAGTTTTAATAATGTCCCAGATGAATTATGGGATTGGGTATGGGAGAGTGGGTTAGGGTCCACTGCGTTCCCTAGTGAGTTGAGAGAGAATGCCCCTGCGGGGCCATTAAGACCTAAATCATTAGTATTAGAGGGAGATTCAAGGACGGGAAAAACATTATGGGCTAGGGCACTAGGAAAACATAATTATTTAAGTGGCCATTTAGATTTAAACGATAAGGTATTTAGTTTAGATGCAGATTATAATATAATAGATGATGTAGACCCACATTATTTAAAACATTTTAAAGAATTCATGGGGGCCCAGGTGGGCTGGCAATCCAACACAAAATACGGAAAGCCGATCCACGTGGAAAAGACAATGCCCTCAATCTTCCTTTGCAATCCTGGTCCTAATTCCTCCTATAAAGAATTCCTGGATGAGGAGAAGAATGCGGCACTAAAAAATTGGGCACTGAAAAATGCAATTTTCGTCTCCCTGCAGGAGCCCCTCTTCAAACCACAATCACCTCGTGCCTCAGAAGATACTGCACAAACAAGCCAAGACAGACAGTCCAGCTAG |
|
Protein Sequence
|
MAATSSGRGIYFTPFTPLDGLIELTPIANMPRKPSSFRLNAKNIFLTYPQCHISKESALEQLKAFHYPIPPVFIKVSAESHQDGQPHLHALLQFKGKFQTTNQRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIEKDGDVISWGEFQIDGRSSRGGVQSANDAYAEALNSGGKDQALQILKEKAPKDYILHYHHLVGNLGRIFKTPPKEYTPPFSLDSFNNVPDELWDWVWESGLGSTAFPSELRENAPAGPLRPKSLVLEGDSRTGKTLWARALGKHNYLSGHLDLNDKVFSLDADYNIIDDVDPHYLKHFKEFMGAQVGWQSNTKYGKPIHVEKTMPSIFLCNPGPNSSYKEFLDEEKNAALKNWALKNAIFVSLQEPLFKPQSPRASEDTAQTSQDRQSS |
|
NCBI Accession
|
YP_009305429.1
|
|
Location
|
2390-2647 |
|
Protein Name
|
HAP/C4 |
|
Coding Region
|
ATGGGCAACCGCATCTGCATGCACTGCTTCAATTCAAGGGGAAATTCCAGACGACAAATCAACGATTCTTCGACCTGGTATCCCCAAGCCGATCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCTCGTCCGACGTCAAGTCCTATATCGAGAAGGACGGAGATGTCATCTCCTGGGGAGAATTTCAGATCGACGGCCGATCATCTAGAGGAGGTGTGCAATCGGCTAACGACGCTTATGCTGAGGCGTTAA |
|
Protein Sequence
|
MGNRICMHCFNSRGNSRRQINDSSTWYPQADQHISIQTFRELNPRPTSSPISRRTEMSSPGENFRSTADHLEEVCNRLTTLMLRR |