Apple geminivirus 1
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGGATTTTGGAGACACCTTTCTCAGCCGTTGGATTTTAATGGCTTTCAAAATTTAAATTTTGAAAGGGGACAGGGGTGGGGACAAAAGGAAAAAGGACAGATTGATGTGACGTTTTTACGCTCTTGTGGGCCCCACATTTGTCTCTTATTAACTACTTTTCTCTGTATACAACTTCCCCTGCAAGTTTCGGAGTCTTTTATTAGCGCCCTTGTAATTTGAATAAATACAATTCAAATTCAAATTAGGGTTTAATGGAAGCCGTGTTCAATCATTTGGTGGGAAAGAAATTGCAGCCCAAGGACGTTTTACCCGCCATTACTGCTTGGATCTGCGAGAAAGGCACAGGTCAACAACTCATTGACTGGGTGAATGGACTCGAGGGGGAGAAAGAGGCCATCTTTCGGGCCCTTAACTCCTGCTCAGCTGAGCAGGAGGGTGAGATGGAGGCAAACGACGATGGCGGGAGCCATGAGGCGTCTCCAGTACGGGAATGTGTACCGGCCGAACCTAATGAAGGCGCGGCGAACAGGATCATCTCTATATCCTGATAAGGGCTATCACGATGACGAGGATAGCCTTGACCCATTTGGAGTTGCTGGGGTCAGGAGGCATATTGATATGCCTGCGCTTGGACAGGGCAAGAATCAGAGGCATACGTCTAAGATTAAGGTTTGGAGCCTCAACATCAAGGGGGTTCTTCATCTTGCACAAGTGTCGACTACGGAGACTGTGGTGGCAGAATTCTTTCTACTATGGAGTTACCGACCGAACGGGGCGGTATTACCTGATTTCAATGAGATCTACACTTCTGGGTCGACGATGACCGAGGTGAGCAACTCTCTGATTGCGAGGATGAAGCATGAGAAGCTAGCTGAGTATAAGCAGCTGGCGAGGAAGAAGATAACCTTGGTGAAGCCCACCAATTCTTCGGCAGGCTCAAATCGAAAGACCTTTACGGTTCAGTTGAAGTTCAGGGGGAGGAACGCCAAGTACTTGACGTTCCAGGAGAATGCGACGTTGGGCAATTGGACGGATCTTAAGTCGGGGGGTTTCTTTTATTTTATTAGGTTTGTAAGCAGCGATGGGAATGCGAGGATGGAAGGACATGTATCTTCTCGAATGATATATTTCCATTAATAAAGAAGCATTTTTACATCAGTTCTTAATTGTTCTACTTCTAACACCCACGCACACTTCTTAACAAAATAATTAATTGCCTCTATTACATAATTAACTGAAATGACTCCTACCATATCTAAATAATTCATTAAATGAAATTCTATTCTACTTCTCAAAGAGGACGCTGCAGATGTCGTCAAGCTCGTCCAGATCCGACAGGTTATCCAGCACTTGTGAAGGTGCAAGGCTTTCCTGAGGTTGTGGTTGAACTTGATTGTGAAGTGGACCTGTTGGTCCTCTGACATATATGCGGGCCGAATGAGGTCGATGCTCACATATATTGGGTTCTTCAGACTCCAGGTATAGACGGCGTAGTTCGCTTGAGATGGTGTAATCGACTCCCCTGTGCGAGAATCCATACTCCTGGCAGTCTGGATTTATGTAGATGATGCAACCGCAGGCGCAGTTAACTCTTCTTCTTCTCTTGGCTGCCTTTGCTTTGGAGTGGATTATCTTCTGTGACCGAGAGGGTTCTTCTGGCATGTCGTACTTCCAATCGTCCACGCACTCTTCTCCTTCTGGACAAGAGCAATTCCTCTTTAAGGGATTAAGGGGAGCTTGTGGTGGGGTCGAAGAGTGGAGCGGAGAGAAAGACAAAGACGGCATTTCCTAAAGCCCAATTTTTCAAATTTGAATTCTTCTCTTCGTCCAACCACTCTTTATAACTGCTTGTAGGCCCAGGATTGCAGAGGAAGATTGTTGGTATGCCCCCTTTAACAAGTAGTGGCTTTCCATACTTCGTATTGCTTTGCCAGTCTCTCTGGGACCCACAGAACTCTTTAAAGTGCTTCAGATAATGCGGATCGACGTCATCAATGACGTTGTATAACGCATCATTGCTAAACACCTTGGGAGAGAGATCAAGATGTCCACATAAGTAATTATGTGGTCCTAAGCTTCTGGCCCACTCAGTTTTTCCAGTTCTTGTTTCTCCCTCAATAAAAATACTCTTCGGTCTTCTTGGCCGCGCAGCGGGATCACTTACAATATTAACACTCACCCAATCATCTAACTCCTCTGGCACATTATTAAAAGAAGAACTAAGATAAATACATCTAAAGGGCTCCGGAGGAGCCATAAATATTTTGGCTGCATTAGCAGACAAATTATGATACTGCGTATAAAAAGTCTTAGGATCCTTCTCCTTAATTATCTGCAGCGAAGCTGATGCGTCAGGAGCATTTAATGCTTCTGCGTAGACTTCAGCTAAATGCTGGCCCTGCCCCCTTGCACTTCTGGCATCGATCTGGAAAACTCCATGGTCAAGAAATTCCCCTCCCTTCTCAATATAGGTCTTGACATCGGACGCGCTCTTAGCTCCCTGTACGTTTGGATGGAAATGTGCTGATCTGGTTGGGGATACCAGGTCGAAGAATCGTTGATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGATGAGGCTCCCCATCTTCGTGTAGCTCTCTGCAAACTCTAACGAATTTCTTATTCGTAGGAGTATTTAGCCCTAGAATTTGTTCTAGGGCTTCTTCTTTGCTAAGAGAGCACCTGGGATAAGTGAGGAAGTAATTCTTGGCTTGGACTTTAAAACGACGTGTGTTGGGCTCTCGTGGCATTTTTGTAATTAAAGGGGTGTCTCCAGATGAGAGCTCCTGGCAACTTATCTATTGAATTGGAGACTGGAGACAATATATAGGGGTTAGAGTTACTTAGGGGTTGGGGGGCACGTGGCGGCCATCCGTATAATATT
Gene Information
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NCBI Accession
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YP_009129268.1
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Location
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265-561 |
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Gene Name
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V2 |
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Protein Name
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V2 protein |
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Coding Region
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ATGGAAGCCGTGTTCAATCATTTGGTGGGAAAGAAATTGCAGCCCAAGGACGTTTTACCCGCCATTACTGCTTGGATCTGCGAGAAAGGCACAGGTCAACAACTCATTGACTGGGTGAATGGACTCGAGGGGGAGAAAGAGGCCATCTTTCGGGCCCTTAACTCCTGCTCAGCTGAGCAGGAGGGTGAGATGGAGGCAAACGACGATGGCGGGAGCCATGAGGCGTCTCCAGTACGGGAATGTGTACCGGCCGAACCTAATGAAGGCGCGGCGAACAGGATCATCTCTATATCCTGA |
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Protein Sequence
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MEAVFNHLVGKKLQPKDVLPAITAWICEKGTGQQLIDWVNGLEGEKEAIFRALNSCSAEQEGEMEANDDGGSHEASPVRECVPAEPNEGAANRIISIS |
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NCBI Accession
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YP_009129269.1
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Location
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383-1150 |
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Gene Name
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V1 |
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Protein Name
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V1 protein |
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Coding Region
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ATGGACTCGAGGGGGAGAAAGAGGCCATCTTTCGGGCCCTTAACTCCTGCTCAGCTGAGCAGGAGGGTGAGATGGAGGCAAACGACGATGGCGGGAGCCATGAGGCGTCTCCAGTACGGGAATGTGTACCGGCCGAACCTAATGAAGGCGCGGCGAACAGGATCATCTCTATATCCTGATAAGGGCTATCACGATGACGAGGATAGCCTTGACCCATTTGGAGTTGCTGGGGTCAGGAGGCATATTGATATGCCTGCGCTTGGACAGGGCAAGAATCAGAGGCATACGTCTAAGATTAAGGTTTGGAGCCTCAACATCAAGGGGGTTCTTCATCTTGCACAAGTGTCGACTACGGAGACTGTGGTGGCAGAATTCTTTCTACTATGGAGTTACCGACCGAACGGGGCGGTATTACCTGATTTCAATGAGATCTACACTTCTGGGTCGACGATGACCGAGGTGAGCAACTCTCTGATTGCGAGGATGAAGCATGAGAAGCTAGCTGAGTATAAGCAGCTGGCGAGGAAGAAGATAACCTTGGTGAAGCCCACCAATTCTTCGGCAGGCTCAAATCGAAAGACCTTTACGGTTCAGTTGAAGTTCAGGGGGAGGAACGCCAAGTACTTGACGTTCCAGGAGAATGCGACGTTGGGCAATTGGACGGATCTTAAGTCGGGGGGTTTCTTTTATTTTATTAGGTTTGTAAGCAGCGATGGGAATGCGAGGATGGAAGGACATGTATCTTCTCGAATGATATATTTCCATTAA |
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Protein Sequence
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MDSRGRKRPSFGPLTPAQLSRRVRWRQTTMAGAMRRLQYGNVYRPNLMKARRTGSSLYPDKGYHDDEDSLDPFGVAGVRRHIDMPALGQGKNQRHTSKIKVWSLNIKGVLHLAQVSTTETVVAEFFLLWSYRPNGAVLPDFNEIYTSGSTMTEVSNSLIARMKHEKLAEYKQLARKKITLVKPTNSSAGSNRKTFTVQLKFRGRNAKYLTFQENATLGNWTDLKSGGFFYFIRFVSSDGNARMEGHVSSRMIYFH |
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NCBI Accession
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YP_009129270.1
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Location
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1147-1551 |
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Gene Name
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C3 |
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Protein Name
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C3 protein |
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Coding Region
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ATGGATTCTCGCACAGGGGAGTCGATTACACCATCTCAAGCGAACTACGCCGTCTATACCTGGAGTCTGAAGAACCCAATATATGTGAGCATCGACCTCATTCGGCCCGCATATATGTCAGAGGACCAACAGGTCCACTTCACAATCAAGTTCAACCACAACCTCAGGAAAGCCTTGCACCTTCACAAGTGCTGGATAACCTGTCGGATCTGGACGAGCTTGACGACATCTGCAGCGTCCTCTTTGAGAAGTAGAATAGAATTTCATTTAATGAATTATTTAGATATGGTAGGAGTCATTTCAGTTAATTATGTAATAGAGGCAATTAATTATTTTGTTAAGAAGTGTGCGTGGGTGTTAGAAGTAGAACAATTAAGAACTGATGTAAAAATGCTTCTTTATTAA |
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Protein Sequence
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MDSRTGESITPSQANYAVYTWSLKNPIYVSIDLIRPAYMSEDQQVHFTIKFNHNLRKALHLHKCWITCRIWTSLTTSAASSLRSRIEFHLMNYLDMVGVISVNYVIEAINYFVKKCAWVLEVEQLRTDVKMLLY |
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NCBI Accession
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YP_009129271.1
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Location
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1298-1798 |
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Gene Name
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C2 |
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Protein Name
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C2 protein |
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Coding Region
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ATGCCGTCTTTGTCTTTCTCTCCGCTCCACTCTTCGACCCCACCACAAGCTCCCCTTAATCCCTTAAAGAGGAATTGCTCTTGTCCAGAAGGAGAAGAGTGCGTGGACGATTGGAAGTACGACATGCCAGAAGAACCCTCTCGGTCACAGAAGATAATCCACTCCAAAGCAAAGGCAGCCAAGAGAAGAAGAAGAGTTAACTGCGCCTGCGGTTGCATCATCTACATAAATCCAGACTGCCAGGAGTATGGATTCTCGCACAGGGGAGTCGATTACACCATCTCAAGCGAACTACGCCGTCTATACCTGGAGTCTGAAGAACCCAATATATGTGAGCATCGACCTCATTCGGCCCGCATATATGTCAGAGGACCAACAGGTCCACTTCACAATCAAGTTCAACCACAACCTCAGGAAAGCCTTGCACCTTCACAAGTGCTGGATAACCTGTCGGATCTGGACGAGCTTGACGACATCTGCAGCGTCCTCTTTGAGAAGTAG |
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Protein Sequence
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MPSLSFSPLHSSTPPQAPLNPLKRNCSCPEGEECVDDWKYDMPEEPSRSQKIIHSKAKAAKRRRRVNCACGCIIYINPDCQEYGFSHRGVDYTISSELRRLYLESEEPNICEHRPHSARIYVRGPTGPLHNQVQPQPQESLAPSQVLDNLSDLDELDDICSVLFEK |
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NCBI Accession
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YP_009129272.1
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Location
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1740-2798 |
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Gene Name
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C1 |
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Protein Name
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C1 protein |
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Coding Region
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ATGCCACGAGAGCCCAACACACGTCGTTTTAAAGTCCAAGCCAAGAATTACTTCCTCACTTATCCCAGGTGCTCTCTTAGCAAAGAAGAAGCCCTAGAACAAATTCTAGGGCTAAATACTCCTACGAATAAGAAATTCGTTAGAGTTTGCAGAGAGCTACACGAAGATGGGGAGCCTCATCTCCACGTGCTTATCCAATTCGAAGGGAAGTACACATGCACGAATCAACGATTCTTCGACCTGGTATCCCCAACCAGATCAGCACATTTCCATCCAAACGTACAGGGAGCTAAGAGCGCGTCCGATGTCAAGACCTATATTGAGAAGGGAGGGGAATTTCTTGACCATGGAGTTTTCCAGATCGATGCCAGAAGTGCAAGGGGGCAGGGCCAGCATTTAGCTGAAGTCTACGCAGAAGCATTAAATGCTCCTGACGCATCAGCTTCGCTGCAGATAATTAAGGAGAAGGATCCTAAGACTTTTTATACGCAGTATCATAATTTGTCTGCTAATGCAGCCAAAATATTTATGGCTCCTCCGGAGCCCTTTAGATGTATTTATCTTAGTTCTTCTTTTAATAATGTGCCAGAGGAGTTAGATGATTGGGTGAGTGTTAATATTGTAAGTGATCCCGCTGCGCGGCCAAGAAGACCGAAGAGTATTTTTATTGAGGGAGAAACAAGAACTGGAAAAACTGAGTGGGCCAGAAGCTTAGGACCACATAATTACTTATGTGGACATCTTGATCTCTCTCCCAAGGTGTTTAGCAATGATGCGTTATACAACGTCATTGATGACGTCGATCCGCATTATCTGAAGCACTTTAAAGAGTTCTGTGGGTCCCAGAGAGACTGGCAAAGCAATACGAAGTATGGAAAGCCACTACTTGTTAAAGGGGGCATACCAACAATCTTCCTCTGCAATCCTGGGCCTACAAGCAGTTATAAAGAGTGGTTGGACGAAGAGAAGAATTCAAATTTGAAAAATTGGGCTTTAGGAAATGCCGTCTTTGTCTTTCTCTCCGCTCCACTCTTCGACCCCACCACAAGCTCCCCTTAA |
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Protein Sequence
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MPREPNTRRFKVQAKNYFLTYPRCSLSKEEALEQILGLNTPTNKKFVRVCRELHEDGEPHLHVLIQFEGKYTCTNQRFFDLVSPTRSAHFHPNVQGAKSASDVKTYIEKGGEFLDHGVFQIDARSARGQGQHLAEVYAEALNAPDASASLQIIKEKDPKTFYTQYHNLSANAAKIFMAPPEPFRCIYLSSSFNNVPEELDDWVSVNIVSDPAARPRRPKSIFIEGETRTGKTEWARSLGPHNYLCGHLDLSPKVFSNDALYNVIDDVDPHYLKHFKEFCGSQRDWQSNTKYGKPLLVKGGIPTIFLCNPGPTSSYKEWLDEEKNSNLKNWALGNAVFVFLSAPLFDPTTSSP |
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NCBI Accession
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YP_009129273.1
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Location
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2399-2632 |
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Gene Name
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C4 |
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Protein Name
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C4 protein |
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Coding Region
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ATGGGGAGCCTCATCTCCACGTGCTTATCCAATTCGAAGGGAAGTACACATGCACGAATCAACGATTCTTCGACCTGGTATCCCCAACCAGATCAGCACATTTCCATCCAAACGTACAGGGAGCTAAGAGCGCGTCCGATGTCAAGACCTATATTGAGAAGGGAGGGGAATTTCTTGACCATGGAGTTTTCCAGATCGATGCCAGAAGTGCAAGGGGGCAGGGCCAGCATTTAG |
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Protein Sequence
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MGSLISTCLSNSKGSTHARINDSSTWYPQPDQHISIQTYRELRARPMSRPILRREGNFLTMEFSRSMPEVQGGRASI |