Apple geminivirus 1
Basic Information
| Genus | Maldovirus |
|---|---|
| NCBI Assembly | GCF_000969055.1 |
| Isolate | China |
| Release date | 2015/4/6 |
| Submitter | Liang,P., Li,S. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_026760
ACCGGATGGCCGCGGATTTTGGAGACACCTTTCTCAGCCGTTGGATTTTAATGGCTTTCAAAATTTAAATTTTGAAAGGGGACAGGGGTGGGGACAAAAGGAAAAAGGACAGATTGATGTGACGTTTTTACGCTCTTGTGGGCCCCACATTTGTCTCTTATTAACTACTTTTCTCTGTATACAACTTCCCCTGCAAGTTTCGGAGTCTTTTATTAGCGCCCTTGTAATTTGAATAAATACAATTCAAATTCAAATTAGGGTTTAATGGAAGCCGTGTTCAATCATTTGGTGGGAAAGAAATTGCAGCCCAAGGACGTTTTACCCGCCATTACTGCTTGGATCTGCGAGAAAGGCACAGGTCAACAACTCATTGACTGGGTGAATGGACTCGAGGGGGAGAAAGAGGCCATCTTTCGGGCCCTTAACTCCTGCTCAGCTGAGCAGGAGGGTGAGATGGAGGCAAACGACGATGGCGGGAGCCATGAGGCGTCTCCAGTACGGGAATGTGTACCGGCCGAACCTAATGAAGGCGCGGCGAACAGGATCATCTCTATATCCTGATAAGGGCTATCACGATGACGAGGATAGCCTTGACCCATTTGGAGTTGCTGGGGTCAGGAGGCATATTGATATGCCTGCGCTTGGACAGGGCAAGAATCAGAGGCATACGTCTAAGATTAAGGTTTGGAGCCTCAACATCAAGGGGGTTCTTCATCTTGCACAAGTGTCGACTACGGAGACTGTGGTGGCAGAATTCTTTCTACTATGGAGTTACCGACCGAACGGGGCGGTATTACCTGATTTCAATGAGATCTACACTTCTGGGTCGACGATGACCGAGGTGAGCAACTCTCTGATTGCGAGGATGAAGCATGAGAAGCTAGCTGAGTATAAGCAGCTGGCGAGGAAGAAGATAACCTTGGTGAAGCCCACCAATTCTTCGGCAGGCTCAAATCGAAAGACCTTTACGGTTCAGTTGAAGTTCAGGGGGAGGAACGCCAAGTACTTGACGTTCCAGGAGAATGCGACGTTGGGCAATTGGACGGATCTTAAGTCGGGGGGTTTCTTTTATTTTATTAGGTTTGTAAGCAGCGATGGGAATGCGAGGATGGAAGGACATGTATCTTCTCGAATGATATATTTCCATTAATAAAGAAGCATTTTTACATCAGTTCTTAATTGTTCTACTTCTAACACCCACGCACACTTCTTAACAAAATAATTAATTGCCTCTATTACATAATTAACTGAAATGACTCCTACCATATCTAAATAATTCATTAAATGAAATTCTATTCTACTTCTCAAAGAGGACGCTGCAGATGTCGTCAAGCTCGTCCAGATCCGACAGGTTATCCAGCACTTGTGAAGGTGCAAGGCTTTCCTGAGGTTGTGGTTGAACTTGATTGTGAAGTGGACCTGTTGGTCCTCTGACATATATGCGGGCCGAATGAGGTCGATGCTCACATATATTGGGTTCTTCAGACTCCAGGTATAGACGGCGTAGTTCGCTTGAGATGGTGTAATCGACTCCCCTGTGCGAGAATCCATACTCCTGGCAGTCTGGATTTATGTAGATGATGCAACCGCAGGCGCAGTTAACTCTTCTTCTTCTCTTGGCTGCCTTTGCTTTGGAGTGGATTATCTTCTGTGACCGAGAGGGTTCTTCTGGCATGTCGTACTTCCAATCGTCCACGCACTCTTCTCCTTCTGGACAAGAGCAATTCCTCTTTAAGGGATTAAGGGGAGCTTGTGGTGGGGTCGAAGAGTGGAGCGGAGAGAAAGACAAAGACGGCATTTCCTAAAGCCCAATTTTTCAAATTTGAATTCTTCTCTTCGTCCAACCACTCTTTATAACTGCTTGTAGGCCCAGGATTGCAGAGGAAGATTGTTGGTATGCCCCCTTTAACAAGTAGTGGCTTTCCATACTTCGTATTGCTTTGCCAGTCTCTCTGGGACCCACAGAACTCTTTAAAGTGCTTCAGATAATGCGGATCGACGTCATCAATGACGTTGTATAACGCATCATTGCTAAACACCTTGGGAGAGAGATCAAGATGTCCACATAAGTAATTATGTGGTCCTAAGCTTCTGGCCCACTCAGTTTTTCCAGTTCTTGTTTCTCCCTCAATAAAAATACTCTTCGGTCTTCTTGGCCGCGCAGCGGGATCACTTACAATATTAACACTCACCCAATCATCTAACTCCTCTGGCACATTATTAAAAGAAGAACTAAGATAAATACATCTAAAGGGCTCCGGAGGAGCCATAAATATTTTGGCTGCATTAGCAGACAAATTATGATACTGCGTATAAAAAGTCTTAGGATCCTTCTCCTTAATTATCTGCAGCGAAGCTGATGCGTCAGGAGCATTTAATGCTTCTGCGTAGACTTCAGCTAAATGCTGGCCCTGCCCCCTTGCACTTCTGGCATCGATCTGGAAAACTCCATGGTCAAGAAATTCCCCTCCCTTCTCAATATAGGTCTTGACATCGGACGCGCTCTTAGCTCCCTGTACGTTTGGATGGAAATGTGCTGATCTGGTTGGGGATACCAGGTCGAAGAATCGTTGATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGATGAGGCTCCCCATCTTCGTGTAGCTCTCTGCAAACTCTAACGAATTTCTTATTCGTAGGAGTATTTAGCCCTAGAATTTGTTCTAGGGCTTCTTCTTTGCTAAGAGAGCACCTGGGATAAGTGAGGAAGTAATTCTTGGCTTGGACTTTAAAACGACGTGTGTTGGGCTCTCGTGGCATTTTTGTAATTAAAGGGGTGTCTCCAGATGAGAGCTCCTGGCAACTTATCTATTGAATTGGAGACTGGAGACAATATATAGGGGTTAGAGTTACTTAGGGGTTGGGGGGCACGTGGCGGCCATCCGTATAATATT
Gene Information
| NCBI Accession | YP_009129268.1 |
|---|---|
| Location | 265-561 |
| Gene Name | V2 |
| Protein Name | V2 protein |
| Coding Region | ATGGAAGCCGTGTTCAATCATTTGGTGGGAAAGAAATTGCAGCCCAAGGACGTTTTACCCGCCATTACTGCTTGGATCTGCGAGAAAGGCACAGGTCAACAACTCATTGACTGGGTGAATGGACTCGAGGGGGAGAAAGAGGCCATCTTTCGGGCCCTTAACTCCTGCTCAGCTGAGCAGGAGGGTGAGATGGAGGCAAACGACGATGGCGGGAGCCATGAGGCGTCTCCAGTACGGGAATGTGTACCGGCCGAACCTAATGAAGGCGCGGCGAACAGGATCATCTCTATATCCTGA |
| Protein Sequence | MEAVFNHLVGKKLQPKDVLPAITAWICEKGTGQQLIDWVNGLEGEKEAIFRALNSCSAEQEGEMEANDDGGSHEASPVRECVPAEPNEGAANRIISIS |
| NCBI Accession | YP_009129269.1 |
|---|---|
| Location | 383-1150 |
| Gene Name | V1 |
| Protein Name | V1 protein |
| Coding Region | ATGGACTCGAGGGGGAGAAAGAGGCCATCTTTCGGGCCCTTAACTCCTGCTCAGCTGAGCAGGAGGGTGAGATGGAGGCAAACGACGATGGCGGGAGCCATGAGGCGTCTCCAGTACGGGAATGTGTACCGGCCGAACCTAATGAAGGCGCGGCGAACAGGATCATCTCTATATCCTGATAAGGGCTATCACGATGACGAGGATAGCCTTGACCCATTTGGAGTTGCTGGGGTCAGGAGGCATATTGATATGCCTGCGCTTGGACAGGGCAAGAATCAGAGGCATACGTCTAAGATTAAGGTTTGGAGCCTCAACATCAAGGGGGTTCTTCATCTTGCACAAGTGTCGACTACGGAGACTGTGGTGGCAGAATTCTTTCTACTATGGAGTTACCGACCGAACGGGGCGGTATTACCTGATTTCAATGAGATCTACACTTCTGGGTCGACGATGACCGAGGTGAGCAACTCTCTGATTGCGAGGATGAAGCATGAGAAGCTAGCTGAGTATAAGCAGCTGGCGAGGAAGAAGATAACCTTGGTGAAGCCCACCAATTCTTCGGCAGGCTCAAATCGAAAGACCTTTACGGTTCAGTTGAAGTTCAGGGGGAGGAACGCCAAGTACTTGACGTTCCAGGAGAATGCGACGTTGGGCAATTGGACGGATCTTAAGTCGGGGGGTTTCTTTTATTTTATTAGGTTTGTAAGCAGCGATGGGAATGCGAGGATGGAAGGACATGTATCTTCTCGAATGATATATTTCCATTAA |
| Protein Sequence | MDSRGRKRPSFGPLTPAQLSRRVRWRQTTMAGAMRRLQYGNVYRPNLMKARRTGSSLYPDKGYHDDEDSLDPFGVAGVRRHIDMPALGQGKNQRHTSKIKVWSLNIKGVLHLAQVSTTETVVAEFFLLWSYRPNGAVLPDFNEIYTSGSTMTEVSNSLIARMKHEKLAEYKQLARKKITLVKPTNSSAGSNRKTFTVQLKFRGRNAKYLTFQENATLGNWTDLKSGGFFYFIRFVSSDGNARMEGHVSSRMIYFH |
| NCBI Accession | YP_009129270.1 |
|---|---|
| Location | 1147-1551 |
| Gene Name | C3 |
| Protein Name | C3 protein |
| Coding Region | ATGGATTCTCGCACAGGGGAGTCGATTACACCATCTCAAGCGAACTACGCCGTCTATACCTGGAGTCTGAAGAACCCAATATATGTGAGCATCGACCTCATTCGGCCCGCATATATGTCAGAGGACCAACAGGTCCACTTCACAATCAAGTTCAACCACAACCTCAGGAAAGCCTTGCACCTTCACAAGTGCTGGATAACCTGTCGGATCTGGACGAGCTTGACGACATCTGCAGCGTCCTCTTTGAGAAGTAGAATAGAATTTCATTTAATGAATTATTTAGATATGGTAGGAGTCATTTCAGTTAATTATGTAATAGAGGCAATTAATTATTTTGTTAAGAAGTGTGCGTGGGTGTTAGAAGTAGAACAATTAAGAACTGATGTAAAAATGCTTCTTTATTAA |
| Protein Sequence | MDSRTGESITPSQANYAVYTWSLKNPIYVSIDLIRPAYMSEDQQVHFTIKFNHNLRKALHLHKCWITCRIWTSLTTSAASSLRSRIEFHLMNYLDMVGVISVNYVIEAINYFVKKCAWVLEVEQLRTDVKMLLY |
| NCBI Accession | YP_009129271.1 |
|---|---|
| Location | 1298-1798 |
| Gene Name | C2 |
| Protein Name | C2 protein |
| Coding Region | ATGCCGTCTTTGTCTTTCTCTCCGCTCCACTCTTCGACCCCACCACAAGCTCCCCTTAATCCCTTAAAGAGGAATTGCTCTTGTCCAGAAGGAGAAGAGTGCGTGGACGATTGGAAGTACGACATGCCAGAAGAACCCTCTCGGTCACAGAAGATAATCCACTCCAAAGCAAAGGCAGCCAAGAGAAGAAGAAGAGTTAACTGCGCCTGCGGTTGCATCATCTACATAAATCCAGACTGCCAGGAGTATGGATTCTCGCACAGGGGAGTCGATTACACCATCTCAAGCGAACTACGCCGTCTATACCTGGAGTCTGAAGAACCCAATATATGTGAGCATCGACCTCATTCGGCCCGCATATATGTCAGAGGACCAACAGGTCCACTTCACAATCAAGTTCAACCACAACCTCAGGAAAGCCTTGCACCTTCACAAGTGCTGGATAACCTGTCGGATCTGGACGAGCTTGACGACATCTGCAGCGTCCTCTTTGAGAAGTAG |
| Protein Sequence | MPSLSFSPLHSSTPPQAPLNPLKRNCSCPEGEECVDDWKYDMPEEPSRSQKIIHSKAKAAKRRRRVNCACGCIIYINPDCQEYGFSHRGVDYTISSELRRLYLESEEPNICEHRPHSARIYVRGPTGPLHNQVQPQPQESLAPSQVLDNLSDLDELDDICSVLFEK |
| NCBI Accession | YP_009129272.1 |
|---|---|
| Location | 1740-2798 |
| Gene Name | C1 |
| Protein Name | C1 protein |
| Coding Region | ATGCCACGAGAGCCCAACACACGTCGTTTTAAAGTCCAAGCCAAGAATTACTTCCTCACTTATCCCAGGTGCTCTCTTAGCAAAGAAGAAGCCCTAGAACAAATTCTAGGGCTAAATACTCCTACGAATAAGAAATTCGTTAGAGTTTGCAGAGAGCTACACGAAGATGGGGAGCCTCATCTCCACGTGCTTATCCAATTCGAAGGGAAGTACACATGCACGAATCAACGATTCTTCGACCTGGTATCCCCAACCAGATCAGCACATTTCCATCCAAACGTACAGGGAGCTAAGAGCGCGTCCGATGTCAAGACCTATATTGAGAAGGGAGGGGAATTTCTTGACCATGGAGTTTTCCAGATCGATGCCAGAAGTGCAAGGGGGCAGGGCCAGCATTTAGCTGAAGTCTACGCAGAAGCATTAAATGCTCCTGACGCATCAGCTTCGCTGCAGATAATTAAGGAGAAGGATCCTAAGACTTTTTATACGCAGTATCATAATTTGTCTGCTAATGCAGCCAAAATATTTATGGCTCCTCCGGAGCCCTTTAGATGTATTTATCTTAGTTCTTCTTTTAATAATGTGCCAGAGGAGTTAGATGATTGGGTGAGTGTTAATATTGTAAGTGATCCCGCTGCGCGGCCAAGAAGACCGAAGAGTATTTTTATTGAGGGAGAAACAAGAACTGGAAAAACTGAGTGGGCCAGAAGCTTAGGACCACATAATTACTTATGTGGACATCTTGATCTCTCTCCCAAGGTGTTTAGCAATGATGCGTTATACAACGTCATTGATGACGTCGATCCGCATTATCTGAAGCACTTTAAAGAGTTCTGTGGGTCCCAGAGAGACTGGCAAAGCAATACGAAGTATGGAAAGCCACTACTTGTTAAAGGGGGCATACCAACAATCTTCCTCTGCAATCCTGGGCCTACAAGCAGTTATAAAGAGTGGTTGGACGAAGAGAAGAATTCAAATTTGAAAAATTGGGCTTTAGGAAATGCCGTCTTTGTCTTTCTCTCCGCTCCACTCTTCGACCCCACCACAAGCTCCCCTTAA |
| Protein Sequence | MPREPNTRRFKVQAKNYFLTYPRCSLSKEEALEQILGLNTPTNKKFVRVCRELHEDGEPHLHVLIQFEGKYTCTNQRFFDLVSPTRSAHFHPNVQGAKSASDVKTYIEKGGEFLDHGVFQIDARSARGQGQHLAEVYAEALNAPDASASLQIIKEKDPKTFYTQYHNLSANAAKIFMAPPEPFRCIYLSSSFNNVPEELDDWVSVNIVSDPAARPRRPKSIFIEGETRTGKTEWARSLGPHNYLCGHLDLSPKVFSNDALYNVIDDVDPHYLKHFKEFCGSQRDWQSNTKYGKPLLVKGGIPTIFLCNPGPTSSYKEWLDEEKNSNLKNWALGNAVFVFLSAPLFDPTTSSP |
| NCBI Accession | YP_009129273.1 |
|---|---|
| Location | 2399-2632 |
| Gene Name | C4 |
| Protein Name | C4 protein |
| Coding Region | ATGGGGAGCCTCATCTCCACGTGCTTATCCAATTCGAAGGGAAGTACACATGCACGAATCAACGATTCTTCGACCTGGTATCCCCAACCAGATCAGCACATTTCCATCCAAACGTACAGGGAGCTAAGAGCGCGTCCGATGTCAAGACCTATATTGAGAAGGGAGGGGAATTTCTTGACCATGGAGTTTTCCAGATCGATGCCAGAAGTGCAAGGGGGCAGGGCCAGCATTTAG |
| Protein Sequence | MGSLISTCLSNSKGSTHARINDSSTWYPQPDQHISIQTYRELRARPMSRPILRREGNFLTMEFSRSMPEVQGGRASI |
References More References in PubMed
| 1 |
Sun PP, et al. Plants (Basel). 2023 Jan 3;12(1):195. doi: 10.3390/plants12010195. PMID: 36616324 |
|---|---|
| 2 |
Wang L, et al. Stress Biol. 2024 Oct 8;4(1):42. doi: 10.1007/s44154-024-00176-8. PMID: 39377848 |
| 3 |
Pest categorisation of non-EU viruses and viroids of Prunus L. EFSA Panel on Plant Health (PLH), et al. EFSA J. 2019 Sep 30;17(9):e05735. doi: 10.2903/j.efsa.2019.5735. eCollection 2019 Sep. PMID: 32626421 |
| 4 |
A New Begomovirus Causes Tomato Leaf Curl Disease in Baja California Sur, Mexico. Holguín-Peña RJ, et al. Plant Dis. 2005 Mar;89(3):341. doi: 10.1094/PD-89-0341A. PMID: 30795368 |