Wild Vitis latent virus

Basic Information

Genus Grablovirus
NCBI Assembly GCF_002270745.1
Isolate USA
Release date 2017/8/26
Submitter Perry,K.L., McLane,H., Thompson,J.R., Fuchs,M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_035480
ACCGGCCCCGCGTGTTGGCCCATTGGTTCGAATCCACGTGTCGGCTTATTATTGGTGTGCTTCTTTCTTAGCGTGTACGCTAAGTTTCGTATATATTCTTTACTTTTGCTTTGCGGCTGTGTATATAAATGATTTTACTTTATTAGCCAGAATGGAATTTTGTACCGTGGTCTCTATCCTTAGAGATATATTGCTGACAATTGGTTTGTTCTTTATTATATATTGGTTAGTGTTCGTTCTTTCTCCTCGCATAAGAAAAGAACCTGTTGCTCGTATATCTGAAAATGTCTCAAACTCTATCAAACGCTCAAATAGCGCAGAATTCGGGAATAGATGACTCAGTCACTATTCCGAAAATACGATTCGATCCGTATGATGAATCGTATTCTGAAACATCTTCTTATTCTTCTTGCTGTGATAGTTCCCGTGGTTCTAGTCAGAGTTCTGGTGGTGGTTTGCTCAAGCATCATAATAGTGATAGAGTATCTAATTCGGTTTTTAACGAATTAGATGATTATAACCCAACTTTGTTGGATTTATCTTTGCCTGCTGCATTATGGTTTATGTGTGAAAGATATTTATCTAGCGTTGTAAAAGGCGATTTATTGGTTTTACCAGGTATATCATCTGCCCAGTGCCCAGCTGTTCGCCGACTTCTTAGGCGAGTATCTAGACGGAATTGTTCTTTTCATTCGAAGTGCGAGGAGTGGGCTTACGGTTGTTTGGAATTAAAGGCTTGCAAAGATGGTATTGAGAGCTCGGAGGAGAGTTCGGAGAAGTCGCCGGTACCCGCGAAGGAGGGTTCTTTCGAAGCGTTCGCGCGTGGCGCGGCGTGCTCGACCTCGTAGTCGACCCTGTCAGTTTTCATTCCATGGAAACAGTTTTGCTGCCCAGCCTACTCTGTTCTTTTTAACTCCTATTGCTCTCGGCAATGGTGCCGAAGATAGGACTGGTCCGGTATTGACTGTGAGTAGTATGTATCTTAAAGGTGTTGTGATTCCGACGGATACGGTTACGGATGGTTTGCATGACGTTTACTTCTGGATAATATTGGACCGCTTTCCTCAGGGGAGCGATCCTTCATATGGTGATATATTTACTGGCAGTGATGCCAGTGGCTCAATGGTTGAAACGTTGACGAGGAACAAGCAGAACCGTAAGAGATTCAGGATCCTTGGATCTAAGAAGTTGGTGGTTGGAGTTAATCGGAAACCACAAGAGTCGCTTCCACATAGCCGTGCTCCGTTCTCTATATTCCAAAGGCGTAGACTTGTAGTTTCATTCAAAAATGATGTAACTGGTGGCGGGCGTAATGATGTTGAACGGAATAGGCTGTATCTTGCTTGTGCTTCTAGCACTGGTCATACCTTTAGGTTGTATTGTAACGGCATTATAAATTTCTTTAATGGAAGTGTTTTTTAATCGACCTCGCTGTTTAATATGGCGTTGTGACATATCAACTTCTTATGTGGATGGTGATATTGTAATTGAGGGGGAACATGACGTTCCCATTATGTCCGAAGATGAAGAAATGGTTAATGGTGAAGTGCATCCGCTGACAGAATTGTTGCGGAAACGGAGAAGGGAACGTGACCCAAACGAGATCGAGATCACGTTCCCAAAACGACGACGTGTGTACGGTGCTGATGCTGGAATGACAGATGTTGACAAGTTGAAGAACTATATTTATGAAGATGATTATGTAAAACACAAAAGACGTCTGGATCTAGAACTCGGTTCTGGACTTCACAGACCAGACAGTCGTTGTAATATAATGTAATGTAATATACAAGTTTGATATTATAAAGTGGTGCTGGAATACATACAAATAAAAAAAAAAAACAAAAAAACCTAAAACTCAAAAACCCATCTAAATAATGTACCCCCCTGATTTACTTTATTAAAACCCGAGGTAGGTCGAAGCCGGAGGCTGAGACCGTTGGCGAGGCTGAGCCCGGAAGCTCAGAACAGGGGTTCTGATATGGTAACAAAAACTATGTTTTGTTCTGCCCACGGTCTGAAAGACACGTGCCAGTTGTTGATTGCTTCGTAATAAGATTGGTCTGGATTGCAGAGAATAATTGACGGTATTCCACCTTTGATAGTCTTTTTCTTCCTGTATTTCTCGTTGCTTATGAAATTGCGTTGTGATCCCAATAAAGCTTTTTTACATGGTAAATACTGGAATGGAATGTCGTCTATGACATTATACATTGCATCATTATTATACTCCGAGAAATCTACATTTTCACACCAATAATTATGTGGGCCTAACGATCTGGCCCACATTGTTTTCCCTGTTCTTGATGGTCCTTCAATCACAATGCTCCTCCTGCGGTCCTTCTCCACCTGCAACGTCAAGTTCATTGTCAGACCGATACTGGTTTTCAACGAATGTTGCAATAGCATCATCTATTTTGTCATCAATGATTTGATGAACGGTCTCTGATTCTATTTCCAAGAAGCGACAATTTGCTAGGCATCTGTGTTCTCTGGCTGTATCTTTACGTACCATGTAGAGTTCTGTCTTGATCCAATGATCAACTTCTGGTGGCATGTGATTGAAAGTGTTGAATTGGCTGGCATGGACGGAAGGGGTTGGAGGCCATGTTTTATCAGCAGCATATTCAAGTCGTTGTAGATGGATGGCGTACTGGTAGGGATAATTGTTTCTAACGAGTTCAAGGAACTCGTGTTTGCTGGTGGCGGAACGTAAGTATTCTCCGAAATCAGCCTCTCGATTTCGGTGTCCTGATCCAGTTCTGTTGGGTTTTGTGCCGGATTCTGTTGTATCTCCATCCTTTCCGACGTAGTTGTAGACGTCTTCAACGTCTCTGGGTTTGGTGATGTTGGGGTGATAGGAATTAGACGATACGGTGATGTCAAAGTGTTTTGAATTACGAATCGTCTGGCGCCTGAAGAAGATGAGCAAGGCGTGTAGGTGTGGCTCGCCATCTAAATGTCGTTCTTTGCCTATTCTGATATACTCTAGCCTGTCTGAGAATTTGGATTTGAAAAAATCCAAAGCGAACTCTTTTATAACTGGACACTGAGGGTATGTTAGGAAAAACGACTTTGAACGGAGATTGAATGATGTCATGATGACGTCAGCTATTTTGTCGTATTACCCCCTAACCTTCCTTATATAAGGGTGGTACATGGTCCAACAGGCTTATTTGGTGGTTCAGAAGAAGGATTTTGGACCACTTTGAACCACTATCGCAACATTACTATTTATAGAGGAGGAAATGAATGCTGACGCGGGGCCGAATAATATT

Gene Information

NCBI Accession YP_009408623.1
Location 285-848
Protein Name V2
Coding Region ATGTCTCAAACTCTATCAAACGCTCAAATAGCGCAGAATTCGGGAATAGATGACTCAGTCACTATTCCGAAAATACGATTCGATCCGTATGATGAATCGTATTCTGAAACATCTTCTTATTCTTCTTGCTGTGATAGTTCCCGTGGTTCTAGTCAGAGTTCTGGTGGTGGTTTGCTCAAGCATCATAATAGTGATAGAGTATCTAATTCGGTTTTTAACGAATTAGATGATTATAACCCAACTTTGTTGGATTTATCTTTGCCTGCTGCATTATGGTTTATGTGTGAAAGATATTTATCTAGCGTTGTAAAAGGCGATTTATTGGTTTTACCAGGTATATCATCTGCCCAGTGCCCAGCTGTTCGCCGACTTCTTAGGCGAGTATCTAGACGGAATTGTTCTTTTCATTCGAAGTGCGAGGAGTGGGCTTACGGTTGTTTGGAATTAAAGGCTTGCAAAGATGGTATTGAGAGCTCGGAGGAGAGTTCGGAGAAGTCGCCGGTACCCGCGAAGGAGGGTTCTTTCGAAGCGTTCGCGCGTGGCGCGGCGTGCTCGACCTCGTAG
Protein Sequence MSQTLSNAQIAQNSGIDDSVTIPKIRFDPYDESYSETSSYSSCCDSSRGSSQSSGGGLLKHHNSDRVSNSVFNELDDYNPTLLDLSLPAALWFMCERYLSSVVKGDLLVLPGISSAQCPAVRRLLRRVSRRNCSFHSKCEEWAYGCLELKACKDGIESSEESSEKSPVPAKEGSFEAFARGAACSTS

NCBI Accession YP_009408624.1
Location 745-1422
Protein Name V1
Coding Region ATGGTATTGAGAGCTCGGAGGAGAGTTCGGAGAAGTCGCCGGTACCCGCGAAGGAGGGTTCTTTCGAAGCGTTCGCGCGTGGCGCGGCGTGCTCGACCTCGTAGTCGACCCTGTCAGTTTTCATTCCATGGAAACAGTTTTGCTGCCCAGCCTACTCTGTTCTTTTTAACTCCTATTGCTCTCGGCAATGGTGCCGAAGATAGGACTGGTCCGGTATTGACTGTGAGTAGTATGTATCTTAAAGGTGTTGTGATTCCGACGGATACGGTTACGGATGGTTTGCATGACGTTTACTTCTGGATAATATTGGACCGCTTTCCTCAGGGGAGCGATCCTTCATATGGTGATATATTTACTGGCAGTGATGCCAGTGGCTCAATGGTTGAAACGTTGACGAGGAACAAGCAGAACCGTAAGAGATTCAGGATCCTTGGATCTAAGAAGTTGGTGGTTGGAGTTAATCGGAAACCACAAGAGTCGCTTCCACATAGCCGTGCTCCGTTCTCTATATTCCAAAGGCGTAGACTTGTAGTTTCATTCAAAAATGATGTAACTGGTGGCGGGCGTAATGATGTTGAACGGAATAGGCTGTATCTTGCTTGTGCTTCTAGCACTGGTCATACCTTTAGGTTGTATTGTAACGGCATTATAAATTTCTTTAATGGAAGTGTTTTTTAA
Protein Sequence MVLRARRRVRRSRRYPRRRVLSKRSRVARRARPRSRPCQFSFHGNSFAAQPTLFFLTPIALGNGAEDRTGPVLTVSSMYLKGVVIPTDTVTDGLHDVYFWIILDRFPQGSDPSYGDIFTGSDASGSMVETLTRNKQNRKRFRILGSKKLVVGVNRKPQESLPHSRAPFSIFQRRRLVVSFKNDVTGGGRNDVERNRLYLACASSTGHTFRLYCNGIINFFNGSVF

NCBI Accession YP_009408625.1
Location 1406-1780
Protein Name V3
Coding Region ATGGAAGTGTTTTTTAATCGACCTCGCTGTTTAATATGGCGTTGTGACATATCAACTTCTTATGTGGATGGTGATATTGTAATTGAGGGGGAACATGACGTTCCCATTATGTCCGAAGATGAAGAAATGGTTAATGGTGAAGTGCATCCGCTGACAGAATTGTTGCGGAAACGGAGAAGGGAACGTGACCCAAACGAGATCGAGATCACGTTCCCAAAACGACGACGTGTGTACGGTGCTGATGCTGGAATGACAGATGTTGACAAGTTGAAGAACTATATTTATGAAGATGATTATGTAAAACACAAAAGACGTCTGGATCTAGAACTCGGTTCTGGACTTCACAGACCAGACAGTCGTTGTAATATAATGTAA
Protein Sequence MEVFFNRPRCLIWRCDISTSYVDGDIVIEGEHDVPIMSEDEEMVNGEVHPLTELLRKRRRERDPNEIEITFPKRRRVYGADAGMTDVDKLKNYIYEDDYVKHKRRLDLELGSGLHRPDSRCNIM

NCBI Accession YP_009408626.1
Location 1963-2412
Protein Name C2
Coding Region ATGATGCTATTGCAACATTCGTTGAAAACCAGTATCGGTCTGACAATGAACTTGACGTTGCAGGTGGAGAAGGACCGCAGGAGGAGCATTGTGATTGAAGGACCATCAAGAACAGGGAAAACAATGTGGGCCAGATCGTTAGGCCCACATAATTATTGGTGTGAAAATGTAGATTTCTCGGAGTATAATAATGATGCAATGTATAATGTCATAGACGACATTCCATTCCAGTATTTACCATGTAAAAAAGCTTTATTGGGATCACAACGCAATTTCATAAGCAACGAGAAATACAGGAAGAAAAAGACTATCAAAGGTGGAATACCGTCAATTATTCTCTGCAATCCAGACCAATCTTATTACGAAGCAATCAACAACTGGCACGTGTCTTTCAGACCGTGGGCAGAACAAAACATAGTTTTTGTTACCATATCAGAACCCCTGTTCTGA
Protein Sequence MMLLQHSLKTSIGLTMNLTLQVEKDRRRSIVIEGPSRTGKTMWARSLGPHNYWCENVDFSEYNNDAMYNVIDDIPFQYLPCKKALLGSQRNFISNEKYRKKKTIKGGIPSIILCNPDQSYYEAINNWHVSFRPWAEQNIVFVTISEPLF

NCBI Accession YP_009408627.1
Location 2315-3100
Protein Name C1
Coding Region ATGACATCATTCAATCTCCGTTCAAAGTCGTTTTTCCTAACATACCCTCAGTGTCCAGTTATAAAAGAGTTCGCTTTGGATTTTTTCAAATCCAAATTCTCAGACAGGCTAGAGTATATCAGAATAGGCAAAGAACGACATTTAGATGGCGAGCCACACCTACACGCCTTGCTCATCTTCTTCAGGCGCCAGACGATTCGTAATTCAAAACACTTTGACATCACCGTATCGTCTAATTCCTATCACCCCAACATCACCAAACCCAGAGACGTTGAAGACGTCTACAACTACGTCGGAAAGGATGGAGATACAACAGAATCCGGCACAAAACCCAACAGAACTGGATCAGGACACCGAAATCGAGAGGCTGATTTCGGAGAATACTTACGTTCCGCCACCAGCAAACACGAGTTCCTTGAACTCGTTAGAAACAATTATCCCTACCAGTACGCCATCCATCTACAACGACTTGAATATGCTGCTGATAAAACATGGCCTCCAACCCCTTCCGTCCATGCCAGCCAATTCAACACTTTCAATCACATGCCACCAGAAGTTGATCATTGGATCAAGACAGAACTCTACATGGTACGTAAAGATACAGCCAGAGAACACAGATGCCTAGCAAATTGTCGCTTCTTGGAAATAGAATCAGAGACCGTTCATCAAATCATTGATGACAAAATAGATGATGCTATTGCAACATTCGTTGAAAACCAGTATCGGTCTGACAATGAACTTGACGTTGCAGGTGGAGAAGGACCGCAGGAGGAGCATTGTGATTGA
Protein Sequence MTSFNLRSKSFFLTYPQCPVIKEFALDFFKSKFSDRLEYIRIGKERHLDGEPHLHALLIFFRRQTIRNSKHFDITVSSNSYHPNITKPRDVEDVYNYVGKDGDTTESGTKPNRTGSGHRNREADFGEYLRSATSKHEFLELVRNNYPYQYAIHLQRLEYAADKTWPPTPSVHASQFNTFNHMPPEVDHWIKTELYMVRKDTAREHRCLANCRFLEIESETVHQIIDDKIDDAIATFVENQYRSDNELDVAGGEGPQEEHCD

NCBI Accession YP_009408628.1
Location 2476-2955
Protein Name C3
Coding Region ATGGCGAGCCACACCTACACGCCTTGCTCATCTTCTTCAGGCGCCAGACGATTCGTAATTCAAAACACTTTGACATCACCGTATCGTCTAATTCCTATCACCCCAACATCACCAAACCCAGAGACGTTGAAGACGTCTACAACTACGTCGGAAAGGATGGAGATACAACAGAATCCGGCACAAAACCCAACAGAACTGGATCAGGACACCGAAATCGAGAGGCTGATTTCGGAGAATACTTACGTTCCGCCACCAGCAAACACGAGTTCCTTGAACTCGTTAGAAACAATTATCCCTACCAGTACGCCATCCATCTACAACGACTTGAATATGCTGCTGATAAAACATGGCCTCCAACCCCTTCCGTCCATGCCAGCCAATTCAACACTTTCAATCACATGCCACCAGAAGTTGATCATTGGATCAAGACAGAACTCTACATGGTACGTAAAGATACAGCCAGAGAACACAGATGCCTAG
Protein Sequence MASHTYTPCSSSSGARRFVIQNTLTSPYRLIPITPTSPNPETLKTSTTTSERMEIQQNPAQNPTELDQDTEIERLISENTYVPPPANTSSLNSLETIIPTSTPSIYNDLNMLLIKHGLQPLPSMPANSTLSITCHQKLIIGSRQNSTWYVKIQPENTDA

References More References in PubMed

1

Analysis of the genome of grapevine red blotch virus and related grabloviruses indicates diversification prior to the arrival of Vitis vinifera in North America.

Thompson JR.  J Gen Virol. 2022 Oct;103(10). doi: 10.1099/jgv.0.001789.

PMID: 36205485
2

Pest categorisation of non-EU viruses and viroids of Vitis L.

EFSA Panel on Plant Health (EFSA PLH Panel), et al.  EFSA J. 2019 Sep 30;17(9):e05669. doi: 10.2903/j.efsa.2019.5669. eCollection 2019 Sep.

PMID: 32626420