Prunus latent virus

Basic Information

Genus Grablovirus
NCBI Assembly GCF_004788535.1
Isolate USA
Release date 2019/6/28
Submitter Al Rwahnih,M., Alabi,O., Westrick,N., Golino,D.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_043533
ACCGGCCCCTCAACTGGTACATGGTATACTTCTCGAATAAGTTATGTTCGCGTTCCCATCAAGAATACCATTTCACTTTATTCCGTGGTTGGATATATTCCTTTTTTGTGGTAGTGTTTTGTTCGATATTCTTTTCTTAGCTTGTATGGAGTTCTGCGATTGGACAGAGGTACTTACAGTTATTCTTTTGACTGGTGCGGCCTTTTGTTTCTTGTACTGGTTAGTATTTCTTTCTCCTCGCGAGTGTAGGGATAAGGATGCCAAGCCAAAGCTATCCAGTTCCAAAGATGCGACGCAGACGTCTGGACCTTCCTCAGACGTCTACGGGCAGCATCAGTTCTAGCGATAGCGGTAGTGATGTCAATATTGATGTTATACGTGATGCTTCGTTTGATGGTGGTTTGTCTGGGAATGATTCTCGCAGGAGACATGTAGTCTCCGTTGCGAATGATTTGTTAGCTGATGATCCTGATGCAACGATTCTTGATTTGTCGTTGCCCTCTGTTCTCTGGTTTTGTACTCAAAGGTATTTGTCTTGTTGTGTAAGGAAGGAATTTGTCCCTTTGCCAGGTATTTCGGATACGCAATTGATCGCTGTTAGGCGTTTGATTAGACGAGTTTCTCGTCGTCACTGCTTGTTTACCTACAAGTGCGAGGAGTGGTTTGAAGGTTGTTACAGGATAAAGCAATATGGTATTGAAGAGGCGACCGAGTCGTCGATATCGCAGGGCCACGAAGAAACGGAGTGGGAGAAGTTCACAAAGGAAGCGGCGTGCACGGCCACGTAGTAGGCCCTGTCAGTTTTCGTTCCATGGAAATGCGTTTGGTGGTACACCAACGCTTTTCTTTTTGACACCCATTGCTCTTGGCAATGGTGCTGAAGACAGAACTGGCTCAGTGCTTACTGTCAGTAGTATGTATTTGAAGGGTGTTGTGGTTCCGACGGACAATGTCACTGACGGTCTTCATGATATTTATTTTTGGATTATATTGGACAGGTTTCCTACTGGCACAGATCCTGCTGTTTCTGATATATTTACTGGCAGTGATACTGGAGGTAGCATGATTGAGACATTGACTAGGAATCGTTTGAATCGTAAGAGGTTTCGTATTCTGGGCTCGAAGAAACTTGTGATTGGAGTTAACAGAAAGCCACAAGAGTCTTTGCCTCATACTCGTGCTGCGTTTAATATCTTCCAAAGACGGCGGTTAGTTGTTGCATTTAAGAATGATGTTTCTGGTGGTGGTAGGAATGATGTTGAGCGTAATCGCATATATATGGCGTGTGCTTCTGCTACCGGACATTCTTTCCGGCTATATCTTAATGGGATTGTTAATTTCTATAATGGTGTTATTTTTTCATAGACCACGCTGTTTGATATGGCGTGTGTATGATCAAGTTTCTGAGGTTGGTTTATACGATGGTTATGATGATGTTGTTAAAGATATACCCATTGATGGGGATGATGATGAGTCGTATATGGTTTCCGATGAGTATGCTGAATTCCTTGAGACGTTGAAGAGACGTCGTTCTGAGCGTGGAGGGATGACTTCCAACTTGAAGCGAAGAAGAGTGATGGTTGATCCTGATGAAGATCTTGTTAATCGTTTGAAGGAGTATTTGGGTGAAGATGAGTATGATAGACATCGTAGACGACTGGACTTAGAACTTGGTTCTGGTCAACATAGACCAGACAGTCGTTGTGTTGTAATGTGAATGTAATAAATTGTGTGATATTTTATGCTGGTGGTGGATGTTATAAAATTAAAAAAAATTTAACAAACCATGACACTCTATGACGAACGTACGGACAAACAGTAACCCGGAATGGTATTAGTTTATGAATGAAAAAGGCGGCGCAGCCGCCGTTAAAATCAGTACAAGCTTGAATTTATTTTGACAAAGATGATATTATCCTCTGCCCAAGGCTTAAAACTGGCATGCCAATTTGTAATTGCGTCTTCATATGATTGGTCGGGGTTACACAGCACTATTGCTGGTATACCCCCTTTGATTGTTTGTTTCTTCCGGTATTTCTCATTCGCTATGTAGTTATGTTGGCAGCCTAATAGCGCTTTCTTGCACGGAAGATATTGAAATGGTATATCGTCTATTACATTATATAATGCTTTGTCATCGTACATGCTGAAGTCAACTGTTTCTGCCCAGTAGTTGTGTGGTCCTAATGATCTTGCCCATTGAGTTTTCCCTGTTCTTGATGGGCCTTCAATCACTAGTGACTTCTTCCGCTGGTTCGTCTCCTGCCACATCCGTTACGTTATCAGACTCGTACAGCCTTTCCATGTACTCTATGTAGTGTGTGTCTACCATGTCATCTATTATAGCTTTGACATTGTATGTTTCATGATGCATGATATTTTGTTGTGCTACTGAGAAGACATCTCTGGCTGTATCTTTACGTACCATGAAGAGTTCTGTGTTGACCCACTGGAGAACTTCTGGTGGAAGGTTATTCCAAGTTGACCATTTTCTGACATGGGGGGAAGGCATTGGAGGCCATGCTTGGTTAGCAAAGTATTCAAGTCGTTGTAGATTGAGGATGTACTGGTATGGGTAGTTGGTTTTGACGAGGTTGAAGAATTCTTCTCTGGTGTTGGAGATTTTGAGGTATTCTCCAAAATCCACCTCTCTAGATCTTTCTCGAGTGTGGAGTCTTGGCTTTTCTCCGAACTCGATGTGGTCTCCATCCTTGGAGACGTATTCGTGAACGTCTTTGACGTTTCTTGGTTTTGTGATGTTTGGGTGATAGGAATGAGACGATACGGTGATGTCAAAGTGTTTTGGATTACGAATGCACTGCCTTTTCCTGAAGATGAGCAAGGCGTGTAGGTGTGGCTCTCCATCTTGGTGTTTTTCTTGGCTGACGAGGGCGTATTCAAGTGTTTTGGTGAACTTTGATTTGAAGAAATCAAGGGCAAATTGTTTGATGACTGGGCACTGAGGATAGGTTAGGAAGAAGTTTTTTGATCTGAGATTGAAGGATGTTGATGCCATCTTGGTTGTATTTTAGATGGTAATGGTATTTGTTTATATAGTGGTTGATGTGTTCACTGTTTTTGTCTTATTATCCCCCAATTCTCCTTATATATTGCTGGTACGTGGTATTTTAGTTGTTTTGAGTGGTATTTTAGCTTGAGGGGCCGTTTAATATT

Gene Information

NCBI Accession YP_009666818.1
Location 258-788
Protein Name V2 Protein
Coding Region ATGCCAAGCCAAAGCTATCCAGTTCCAAAGATGCGACGCAGACGTCTGGACCTTCCTCAGACGTCTACGGGCAGCATCAGTTCTAGCGATAGCGGTAGTGATGTCAATATTGATGTTATACGTGATGCTTCGTTTGATGGTGGTTTGTCTGGGAATGATTCTCGCAGGAGACATGTAGTCTCCGTTGCGAATGATTTGTTAGCTGATGATCCTGATGCAACGATTCTTGATTTGTCGTTGCCCTCTGTTCTCTGGTTTTGTACTCAAAGGTATTTGTCTTGTTGTGTAAGGAAGGAATTTGTCCCTTTGCCAGGTATTTCGGATACGCAATTGATCGCTGTTAGGCGTTTGATTAGACGAGTTTCTCGTCGTCACTGCTTGTTTACCTACAAGTGCGAGGAGTGGTTTGAAGGTTGTTACAGGATAAAGCAATATGGTATTGAAGAGGCGACCGAGTCGTCGATATCGCAGGGCCACGAAGAAACGGAGTGGGAGAAGTTCACAAAGGAAGCGGCGTGCACGGCCACGTAG
Protein Sequence MPSQSYPVPKMRRRRLDLPQTSTGSISSSDSGSDVNIDVIRDASFDGGLSGNDSRRRHVVSVANDLLADDPDATILDLSLPSVLWFCTQRYLSCCVRKEFVPLPGISDTQLIAVRRLIRRVSRRHCLFTYKCEEWFEGCYRIKQYGIEEATESSISQGHEETEWEKFTKEAACTAT

NCBI Accession YP_009666819.1
Location 691-1365
Protein Name CP/V1 Protein
Coding Region ATGGTATTGAAGAGGCGACCGAGTCGTCGATATCGCAGGGCCACGAAGAAACGGAGTGGGAGAAGTTCACAAAGGAAGCGGCGTGCACGGCCACGTAGTAGGCCCTGTCAGTTTTCGTTCCATGGAAATGCGTTTGGTGGTACACCAACGCTTTTCTTTTTGACACCCATTGCTCTTGGCAATGGTGCTGAAGACAGAACTGGCTCAGTGCTTACTGTCAGTAGTATGTATTTGAAGGGTGTTGTGGTTCCGACGGACAATGTCACTGACGGTCTTCATGATATTTATTTTTGGATTATATTGGACAGGTTTCCTACTGGCACAGATCCTGCTGTTTCTGATATATTTACTGGCAGTGATACTGGAGGTAGCATGATTGAGACATTGACTAGGAATCGTTTGAATCGTAAGAGGTTTCGTATTCTGGGCTCGAAGAAACTTGTGATTGGAGTTAACAGAAAGCCACAAGAGTCTTTGCCTCATACTCGTGCTGCGTTTAATATCTTCCAAAGACGGCGGTTAGTTGTTGCATTTAAGAATGATGTTTCTGGTGGTGGTAGGAATGATGTTGAGCGTAATCGCATATATATGGCGTGTGCTTCTGCTACCGGACATTCTTTCCGGCTATATCTTAATGGGATTGTTAATTTCTATAATGGTGTTATTTTTTCATAG
Protein Sequence MVLKRRPSRRYRRATKKRSGRSSQRKRRARPRSRPCQFSFHGNAFGGTPTLFFLTPIALGNGAEDRTGSVLTVSSMYLKGVVVPTDNVTDGLHDIYFWIILDRFPTGTDPAVSDIFTGSDTGGSMIETLTRNRLNRKRFRILGSKKLVIGVNRKPQESLPHTRAAFNIFQRRRLVVAFKNDVSGGGRNDVERNRIYMACASATGHSFRLYLNGIVNFYNGVIFS

NCBI Accession YP_009666820.1
Location 1229-1717
Protein Name V3 Protein
Coding Region ATGATGTTTCTGGTGGTGGTAGGAATGATGTTGAGCGTAATCGCATATATATGGCGTGTGCTTCTGCTACCGGACATTCTTTCCGGCTATATCTTAATGGGATTGTTAATTTCTATAATGGTGTTATTTTTTCATAGACCACGCTGTTTGATATGGCGTGTGTATGATCAAGTTTCTGAGGTTGGTTTATACGATGGTTATGATGATGTTGTTAAAGATATACCCATTGATGGGGATGATGATGAGTCGTATATGGTTTCCGATGAGTATGCTGAATTCCTTGAGACGTTGAAGAGACGTCGTTCTGAGCGTGGAGGGATGACTTCCAACTTGAAGCGAAGAAGAGTGATGGTTGATCCTGATGAAGATCTTGTTAATCGTTTGAAGGAGTATTTGGGTGAAGATGAGTATGATAGACATCGTAGACGACTGGACTTAGAACTTGGTTCTGGTCAACATAGACCAGACAGTCGTTGTGTTGTAATGTGA
Protein Sequence MMFLVVVGMMLSVIAYIWRVLLLPDILSGYILMGLLISIMVLFFHRPRCLIWRVYDQVSEVGLYDGYDDVVKDIPIDGDDDESYMVSDEYAEFLETLKRRRSERGGMTSNLKRRRVMVDPDEDLVNRLKEYLGEDEYDRHRRRLDLELGSGQHRPDSRCVVM

NCBI Accession YP_009666821.1
Location 1876-2271
Protein Name RepB/C2 Protein
Coding Region ATGTGGCAGGAGACGAACCAGCGGAAGAAGTCACTAGTGATTGAAGGCCCATCAAGAACAGGGAAAACTCAATGGGCAAGATCATTAGGACCACACAACTACTGGGCAGAAACAGTTGACTTCAGCATGTACGATGACAAAGCATTATATAATGTAATAGACGATATACCATTTCAATATCTTCCGTGCAAGAAAGCGCTATTAGGCTGCCAACATAACTACATAGCGAATGAGAAATACCGGAAGAAACAAACAATCAAAGGGGGTATACCAGCAATAGTGCTGTGTAACCCCGACCAATCATATGAAGACGCAATTACAAATTGGCATGCCAGTTTTAAGCCTTGGGCAGAGGATAATATCATCTTTGTCAAAATAAATTCAAGCTTGTACTGA
Protein Sequence MWQETNQRKKSLVIEGPSRTGKTQWARSLGPHNYWAETVDFSMYDDKALYNVIDDIPFQYLPCKKALLGCQHNYIANEKYRKKQTIKGGIPAIVLCNPDQSYEDAITNWHASFKPWAEDNIIFVKINSSLY

NCBI Accession YP_009666822.1
Location 2228-3016
Protein Name RepA/C1 Protein
Coding Region ATGGCATCAACATCCTTCAATCTCAGATCAAAAAACTTCTTCCTAACCTATCCTCAGTGCCCAGTCATCAAACAATTTGCCCTTGATTTCTTCAAATCAAAGTTCACCAAAACACTTGAATACGCCCTCGTCAGCCAAGAAAAACACCAAGATGGAGAGCCACACCTACACGCCTTGCTCATCTTCAGGAAAAGGCAGTGCATTCGTAATCCAAAACACTTTGACATCACCGTATCGTCTCATTCCTATCACCCAAACATCACAAAACCAAGAAACGTCAAAGACGTTCACGAATACGTCTCCAAGGATGGAGACCACATCGAGTTCGGAGAAAAGCCAAGACTCCACACTCGAGAAAGATCTAGAGAGGTGGATTTTGGAGAATACCTCAAAATCTCCAACACCAGAGAAGAATTCTTCAACCTCGTCAAAACCAACTACCCATACCAGTACATCCTCAATCTACAACGACTTGAATACTTTGCTAACCAAGCATGGCCTCCAATGCCTTCCCCCCATGTCAGAAAATGGTCAACTTGGAATAACCTTCCACCAGAAGTTCTCCAGTGGGTCAACACAGAACTCTTCATGGTACGTAAAGATACAGCCAGAGATGTCTTCTCAGTAGCACAACAAAATATCATGCATCATGAAACATACAATGTCAAAGCTATAATAGATGACATGGTAGACACACACTACATAGAGTACATGGAAAGGCTGTACGAGTCTGATAACGTAACGGATGTGGCAGGAGACGAACCAGCGGAAGAAGTCACTAGTGATTGA
Protein Sequence MASTSFNLRSKNFFLTYPQCPVIKQFALDFFKSKFTKTLEYALVSQEKHQDGEPHLHALLIFRKRQCIRNPKHFDITVSSHSYHPNITKPRNVKDVHEYVSKDGDHIEFGEKPRLHTRERSREVDFGEYLKISNTREEFFNLVKTNYPYQYILNLQRLEYFANQAWPPMPSPHVRKWSTWNNLPPEVLQWVNTELFMVRKDTARDVFSVAQQNIMHHETYNVKAIIDDMVDTHYIEYMERLYESDNVTDVAGDEPAEEVTSD

NCBI Accession YP_009666823.1
Location 2389-2865
Protein Name C3 Protein
Coding Region ATGGAGAGCCACACCTACACGCCTTGCTCATCTTCAGGAAAAGGCAGTGCATTCGTAATCCAAAACACTTTGACATCACCGTATCGTCTCATTCCTATCACCCAAACATCACAAAACCAAGAAACGTCAAAGACGTTCACGAATACGTCTCCAAGGATGGAGACCACATCGAGTTCGGAGAAAAGCCAAGACTCCACACTCGAGAAAGATCTAGAGAGGTGGATTTTGGAGAATACCTCAAAATCTCCAACACCAGAGAAGAATTCTTCAACCTCGTCAAAACCAACTACCCATACCAGTACATCCTCAATCTACAACGACTTGAATACTTTGCTAACCAAGCATGGCCTCCAATGCCTTCCCCCCATGTCAGAAAATGGTCAACTTGGAATAACCTTCCACCAGAAGTTCTCCAGTGGGTCAACACAGAACTCTTCATGGTACGTAAAGATACAGCCAGAGATGTCTTCTCAGTAG
Protein Sequence MESHTYTPCSSSGKGSAFVIQNTLTSPYRLIPITQTSQNQETSKTFTNTSPRMETTSSSEKSQDSTLEKDLERWILENTSKSPTPEKNSSTSSKPTTHTSTSSIYNDLNTLLTKHGLQCLPPMSENGQLGITFHQKFSSGSTQNSSWYVKIQPEMSSQ

References More References in PubMed

1

Complete genome sequences of three Prunus-infecting nepoviruses: apricot latent ringspot virus, myrobalan latent ringspot virus, and a novel virus from smooth stone peach (Prunus mira Koehne).

Khalili M, et al.  Arch Virol. 2024 Jul 17;169(8):168. doi: 10.1007/s00705-024-06091-7.

PMID: 39020218
2

Characterization of Prunus-infecting apricot latent virus-like Foveaviruses: evolutionary and taxonomic implications.

Youssef F, et al.  Virus Res. 2011 Feb;155(2):440-5. doi: 10.1016/j.virusres.2010.11.013. Epub 2010 Dec 7.

PMID: 21144869
3

Identification of divergent isolates of cherry latent virus 1 in Greek sweet cherry orchards.

Orfanidou CG, et al.  Arch Virol. 2023 Sep 7;168(10):243. doi: 10.1007/s00705-023-05875-7.

PMID: 37676309
4

A remarkable synergistic effect at the transcriptomic level in peach fruits doubly infected by prunus necrotic ringspot virus and peach latent mosaic viroid.

Herranz MC, et al.  Virol J. 2013 May 28;10:164. doi: 10.1186/1743-422X-10-164.

PMID: 23710752
5

Updating the Quarantine Status of Prunus Infecting Viruses in Australia.

Kinoti WM, et al.  Viruses. 2020 Feb 23;12(2):246. doi: 10.3390/v12020246.

PMID: 32102210
6

First Report of Apricot latent virus and Plum bark necrosis stem pitting-associated virus in Apricot from Spain.

García-Ibarra A, et al.  Plant Dis. 2010 Feb;94(2):275. doi: 10.1094/PDIS-94-2-0275A.

PMID: 30754285
7

First Report of Cherry virus A in Prunus mume in China.

Marais A, et al.  Plant Dis. 2008 Nov;92(11):1589. doi: 10.1094/PDIS-92-11-1589A.

PMID: 30764450
8

Apricot latent virus: a new species in the genus Foveavirus.

Nemchinov LG, et al.  Arch Virol. 2000;145(9):1801-13. doi: 10.1007/s007050070057.

PMID: 11043942
9

The Diversity of Strawberry latent ringspot virus in New Zealand.

Tang J, et al.  Plant Dis. 2013 May;97(5):662-667. doi: 10.1094/PDIS-07-12-0703-RE.

PMID: 30722200
10

Viromes of Hungarian Peach Trees Identified by High-Throughput Sequencing of Small RNAs.

Barath D, et al.  Plants (Basel). 2022 Jun 16;11(12):1591. doi: 10.3390/plants11121591.

PMID: 35736743