Prunus latent virus


Basic Information

Genus Grablovirus
NCBI Assembly GCF_004788535.1
Isolate USA
Release date 2019/6/28
Submitter Al Rwahnih,M., Alabi,O., Westrick,N., Golino,D.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_043533
ACCGGCCCCTCAACTGGTACATGGTATACTTCTCGAATAAGTTATGTTCGCGTTCCCATCAAGAATACCATTTCACTTTATTCCGTGGTTGGATATATTCCTTTTTTGTGGTAGTGTTTTGTTCGATATTCTTTTCTTAGCTTGTATGGAGTTCTGCGATTGGACAGAGGTACTTACAGTTATTCTTTTGACTGGTGCGGCCTTTTGTTTCTTGTACTGGTTAGTATTTCTTTCTCCTCGCGAGTGTAGGGATAAGGATGCCAAGCCAAAGCTATCCAGTTCCAAAGATGCGACGCAGACGTCTGGACCTTCCTCAGACGTCTACGGGCAGCATCAGTTCTAGCGATAGCGGTAGTGATGTCAATATTGATGTTATACGTGATGCTTCGTTTGATGGTGGTTTGTCTGGGAATGATTCTCGCAGGAGACATGTAGTCTCCGTTGCGAATGATTTGTTAGCTGATGATCCTGATGCAACGATTCTTGATTTGTCGTTGCCCTCTGTTCTCTGGTTTTGTACTCAAAGGTATTTGTCTTGTTGTGTAAGGAAGGAATTTGTCCCTTTGCCAGGTATTTCGGATACGCAATTGATCGCTGTTAGGCGTTTGATTAGACGAGTTTCTCGTCGTCACTGCTTGTTTACCTACAAGTGCGAGGAGTGGTTTGAAGGTTGTTACAGGATAAAGCAATATGGTATTGAAGAGGCGACCGAGTCGTCGATATCGCAGGGCCACGAAGAAACGGAGTGGGAGAAGTTCACAAAGGAAGCGGCGTGCACGGCCACGTAGTAGGCCCTGTCAGTTTTCGTTCCATGGAAATGCGTTTGGTGGTACACCAACGCTTTTCTTTTTGACACCCATTGCTCTTGGCAATGGTGCTGAAGACAGAACTGGCTCAGTGCTTACTGTCAGTAGTATGTATTTGAAGGGTGTTGTGGTTCCGACGGACAATGTCACTGACGGTCTTCATGATATTTATTTTTGGATTATATTGGACAGGTTTCCTACTGGCACAGATCCTGCTGTTTCTGATATATTTACTGGCAGTGATACTGGAGGTAGCATGATTGAGACATTGACTAGGAATCGTTTGAATCGTAAGAGGTTTCGTATTCTGGGCTCGAAGAAACTTGTGATTGGAGTTAACAGAAAGCCACAAGAGTCTTTGCCTCATACTCGTGCTGCGTTTAATATCTTCCAAAGACGGCGGTTAGTTGTTGCATTTAAGAATGATGTTTCTGGTGGTGGTAGGAATGATGTTGAGCGTAATCGCATATATATGGCGTGTGCTTCTGCTACCGGACATTCTTTCCGGCTATATCTTAATGGGATTGTTAATTTCTATAATGGTGTTATTTTTTCATAGACCACGCTGTTTGATATGGCGTGTGTATGATCAAGTTTCTGAGGTTGGTTTATACGATGGTTATGATGATGTTGTTAAAGATATACCCATTGATGGGGATGATGATGAGTCGTATATGGTTTCCGATGAGTATGCTGAATTCCTTGAGACGTTGAAGAGACGTCGTTCTGAGCGTGGAGGGATGACTTCCAACTTGAAGCGAAGAAGAGTGATGGTTGATCCTGATGAAGATCTTGTTAATCGTTTGAAGGAGTATTTGGGTGAAGATGAGTATGATAGACATCGTAGACGACTGGACTTAGAACTTGGTTCTGGTCAACATAGACCAGACAGTCGTTGTGTTGTAATGTGAATGTAATAAATTGTGTGATATTTTATGCTGGTGGTGGATGTTATAAAATTAAAAAAAATTTAACAAACCATGACACTCTATGACGAACGTACGGACAAACAGTAACCCGGAATGGTATTAGTTTATGAATGAAAAAGGCGGCGCAGCCGCCGTTAAAATCAGTACAAGCTTGAATTTATTTTGACAAAGATGATATTATCCTCTGCCCAAGGCTTAAAACTGGCATGCCAATTTGTAATTGCGTCTTCATATGATTGGTCGGGGTTACACAGCACTATTGCTGGTATACCCCCTTTGATTGTTTGTTTCTTCCGGTATTTCTCATTCGCTATGTAGTTATGTTGGCAGCCTAATAGCGCTTTCTTGCACGGAAGATATTGAAATGGTATATCGTCTATTACATTATATAATGCTTTGTCATCGTACATGCTGAAGTCAACTGTTTCTGCCCAGTAGTTGTGTGGTCCTAATGATCTTGCCCATTGAGTTTTCCCTGTTCTTGATGGGCCTTCAATCACTAGTGACTTCTTCCGCTGGTTCGTCTCCTGCCACATCCGTTACGTTATCAGACTCGTACAGCCTTTCCATGTACTCTATGTAGTGTGTGTCTACCATGTCATCTATTATAGCTTTGACATTGTATGTTTCATGATGCATGATATTTTGTTGTGCTACTGAGAAGACATCTCTGGCTGTATCTTTACGTACCATGAAGAGTTCTGTGTTGACCCACTGGAGAACTTCTGGTGGAAGGTTATTCCAAGTTGACCATTTTCTGACATGGGGGGAAGGCATTGGAGGCCATGCTTGGTTAGCAAAGTATTCAAGTCGTTGTAGATTGAGGATGTACTGGTATGGGTAGTTGGTTTTGACGAGGTTGAAGAATTCTTCTCTGGTGTTGGAGATTTTGAGGTATTCTCCAAAATCCACCTCTCTAGATCTTTCTCGAGTGTGGAGTCTTGGCTTTTCTCCGAACTCGATGTGGTCTCCATCCTTGGAGACGTATTCGTGAACGTCTTTGACGTTTCTTGGTTTTGTGATGTTTGGGTGATAGGAATGAGACGATACGGTGATGTCAAAGTGTTTTGGATTACGAATGCACTGCCTTTTCCTGAAGATGAGCAAGGCGTGTAGGTGTGGCTCTCCATCTTGGTGTTTTTCTTGGCTGACGAGGGCGTATTCAAGTGTTTTGGTGAACTTTGATTTGAAGAAATCAAGGGCAAATTGTTTGATGACTGGGCACTGAGGATAGGTTAGGAAGAAGTTTTTTGATCTGAGATTGAAGGATGTTGATGCCATCTTGGTTGTATTTTAGATGGTAATGGTATTTGTTTATATAGTGGTTGATGTGTTCACTGTTTTTGTCTTATTATCCCCCAATTCTCCTTATATATTGCTGGTACGTGGTATTTTAGTTGTTTTGAGTGGTATTTTAGCTTGAGGGGCCGTTTAATATT

Gene Information

NCBI Accession YP_009666818.1
Location 258-788
Protein Name V2 Protein
Coding Region ATGCCAAGCCAAAGCTATCCAGTTCCAAAGATGCGACGCAGACGTCTGGACCTTCCTCAGACGTCTACGGGCAGCATCAGTTCTAGCGATAGCGGTAGTGATGTCAATATTGATGTTATACGTGATGCTTCGTTTGATGGTGGTTTGTCTGGGAATGATTCTCGCAGGAGACATGTAGTCTCCGTTGCGAATGATTTGTTAGCTGATGATCCTGATGCAACGATTCTTGATTTGTCGTTGCCCTCTGTTCTCTGGTTTTGTACTCAAAGGTATTTGTCTTGTTGTGTAAGGAAGGAATTTGTCCCTTTGCCAGGTATTTCGGATACGCAATTGATCGCTGTTAGGCGTTTGATTAGACGAGTTTCTCGTCGTCACTGCTTGTTTACCTACAAGTGCGAGGAGTGGTTTGAAGGTTGTTACAGGATAAAGCAATATGGTATTGAAGAGGCGACCGAGTCGTCGATATCGCAGGGCCACGAAGAAACGGAGTGGGAGAAGTTCACAAAGGAAGCGGCGTGCACGGCCACGTAG
Protein Sequence MPSQSYPVPKMRRRRLDLPQTSTGSISSSDSGSDVNIDVIRDASFDGGLSGNDSRRRHVVSVANDLLADDPDATILDLSLPSVLWFCTQRYLSCCVRKEFVPLPGISDTQLIAVRRLIRRVSRRHCLFTYKCEEWFEGCYRIKQYGIEEATESSISQGHEETEWEKFTKEAACTAT

NCBI Accession YP_009666819.1
Location 691-1365
Protein Name CP/V1 Protein
Coding Region ATGGTATTGAAGAGGCGACCGAGTCGTCGATATCGCAGGGCCACGAAGAAACGGAGTGGGAGAAGTTCACAAAGGAAGCGGCGTGCACGGCCACGTAGTAGGCCCTGTCAGTTTTCGTTCCATGGAAATGCGTTTGGTGGTACACCAACGCTTTTCTTTTTGACACCCATTGCTCTTGGCAATGGTGCTGAAGACAGAACTGGCTCAGTGCTTACTGTCAGTAGTATGTATTTGAAGGGTGTTGTGGTTCCGACGGACAATGTCACTGACGGTCTTCATGATATTTATTTTTGGATTATATTGGACAGGTTTCCTACTGGCACAGATCCTGCTGTTTCTGATATATTTACTGGCAGTGATACTGGAGGTAGCATGATTGAGACATTGACTAGGAATCGTTTGAATCGTAAGAGGTTTCGTATTCTGGGCTCGAAGAAACTTGTGATTGGAGTTAACAGAAAGCCACAAGAGTCTTTGCCTCATACTCGTGCTGCGTTTAATATCTTCCAAAGACGGCGGTTAGTTGTTGCATTTAAGAATGATGTTTCTGGTGGTGGTAGGAATGATGTTGAGCGTAATCGCATATATATGGCGTGTGCTTCTGCTACCGGACATTCTTTCCGGCTATATCTTAATGGGATTGTTAATTTCTATAATGGTGTTATTTTTTCATAG
Protein Sequence MVLKRRPSRRYRRATKKRSGRSSQRKRRARPRSRPCQFSFHGNAFGGTPTLFFLTPIALGNGAEDRTGSVLTVSSMYLKGVVVPTDNVTDGLHDIYFWIILDRFPTGTDPAVSDIFTGSDTGGSMIETLTRNRLNRKRFRILGSKKLVIGVNRKPQESLPHTRAAFNIFQRRRLVVAFKNDVSGGGRNDVERNRIYMACASATGHSFRLYLNGIVNFYNGVIFS

NCBI Accession YP_009666820.1
Location 1229-1717
Protein Name V3 Protein
Coding Region ATGATGTTTCTGGTGGTGGTAGGAATGATGTTGAGCGTAATCGCATATATATGGCGTGTGCTTCTGCTACCGGACATTCTTTCCGGCTATATCTTAATGGGATTGTTAATTTCTATAATGGTGTTATTTTTTCATAGACCACGCTGTTTGATATGGCGTGTGTATGATCAAGTTTCTGAGGTTGGTTTATACGATGGTTATGATGATGTTGTTAAAGATATACCCATTGATGGGGATGATGATGAGTCGTATATGGTTTCCGATGAGTATGCTGAATTCCTTGAGACGTTGAAGAGACGTCGTTCTGAGCGTGGAGGGATGACTTCCAACTTGAAGCGAAGAAGAGTGATGGTTGATCCTGATGAAGATCTTGTTAATCGTTTGAAGGAGTATTTGGGTGAAGATGAGTATGATAGACATCGTAGACGACTGGACTTAGAACTTGGTTCTGGTCAACATAGACCAGACAGTCGTTGTGTTGTAATGTGA
Protein Sequence MMFLVVVGMMLSVIAYIWRVLLLPDILSGYILMGLLISIMVLFFHRPRCLIWRVYDQVSEVGLYDGYDDVVKDIPIDGDDDESYMVSDEYAEFLETLKRRRSERGGMTSNLKRRRVMVDPDEDLVNRLKEYLGEDEYDRHRRRLDLELGSGQHRPDSRCVVM

NCBI Accession YP_009666821.1
Location 1876-2271
Protein Name RepB/C2 Protein
Coding Region ATGTGGCAGGAGACGAACCAGCGGAAGAAGTCACTAGTGATTGAAGGCCCATCAAGAACAGGGAAAACTCAATGGGCAAGATCATTAGGACCACACAACTACTGGGCAGAAACAGTTGACTTCAGCATGTACGATGACAAAGCATTATATAATGTAATAGACGATATACCATTTCAATATCTTCCGTGCAAGAAAGCGCTATTAGGCTGCCAACATAACTACATAGCGAATGAGAAATACCGGAAGAAACAAACAATCAAAGGGGGTATACCAGCAATAGTGCTGTGTAACCCCGACCAATCATATGAAGACGCAATTACAAATTGGCATGCCAGTTTTAAGCCTTGGGCAGAGGATAATATCATCTTTGTCAAAATAAATTCAAGCTTGTACTGA
Protein Sequence MWQETNQRKKSLVIEGPSRTGKTQWARSLGPHNYWAETVDFSMYDDKALYNVIDDIPFQYLPCKKALLGCQHNYIANEKYRKKQTIKGGIPAIVLCNPDQSYEDAITNWHASFKPWAEDNIIFVKINSSLY

NCBI Accession YP_009666822.1
Location 2228-3016
Protein Name RepA/C1 Protein
Coding Region ATGGCATCAACATCCTTCAATCTCAGATCAAAAAACTTCTTCCTAACCTATCCTCAGTGCCCAGTCATCAAACAATTTGCCCTTGATTTCTTCAAATCAAAGTTCACCAAAACACTTGAATACGCCCTCGTCAGCCAAGAAAAACACCAAGATGGAGAGCCACACCTACACGCCTTGCTCATCTTCAGGAAAAGGCAGTGCATTCGTAATCCAAAACACTTTGACATCACCGTATCGTCTCATTCCTATCACCCAAACATCACAAAACCAAGAAACGTCAAAGACGTTCACGAATACGTCTCCAAGGATGGAGACCACATCGAGTTCGGAGAAAAGCCAAGACTCCACACTCGAGAAAGATCTAGAGAGGTGGATTTTGGAGAATACCTCAAAATCTCCAACACCAGAGAAGAATTCTTCAACCTCGTCAAAACCAACTACCCATACCAGTACATCCTCAATCTACAACGACTTGAATACTTTGCTAACCAAGCATGGCCTCCAATGCCTTCCCCCCATGTCAGAAAATGGTCAACTTGGAATAACCTTCCACCAGAAGTTCTCCAGTGGGTCAACACAGAACTCTTCATGGTACGTAAAGATACAGCCAGAGATGTCTTCTCAGTAGCACAACAAAATATCATGCATCATGAAACATACAATGTCAAAGCTATAATAGATGACATGGTAGACACACACTACATAGAGTACATGGAAAGGCTGTACGAGTCTGATAACGTAACGGATGTGGCAGGAGACGAACCAGCGGAAGAAGTCACTAGTGATTGA
Protein Sequence MASTSFNLRSKNFFLTYPQCPVIKQFALDFFKSKFTKTLEYALVSQEKHQDGEPHLHALLIFRKRQCIRNPKHFDITVSSHSYHPNITKPRNVKDVHEYVSKDGDHIEFGEKPRLHTRERSREVDFGEYLKISNTREEFFNLVKTNYPYQYILNLQRLEYFANQAWPPMPSPHVRKWSTWNNLPPEVLQWVNTELFMVRKDTARDVFSVAQQNIMHHETYNVKAIIDDMVDTHYIEYMERLYESDNVTDVAGDEPAEEVTSD

NCBI Accession YP_009666823.1
Location 2389-2865
Protein Name C3 Protein
Coding Region ATGGAGAGCCACACCTACACGCCTTGCTCATCTTCAGGAAAAGGCAGTGCATTCGTAATCCAAAACACTTTGACATCACCGTATCGTCTCATTCCTATCACCCAAACATCACAAAACCAAGAAACGTCAAAGACGTTCACGAATACGTCTCCAAGGATGGAGACCACATCGAGTTCGGAGAAAAGCCAAGACTCCACACTCGAGAAAGATCTAGAGAGGTGGATTTTGGAGAATACCTCAAAATCTCCAACACCAGAGAAGAATTCTTCAACCTCGTCAAAACCAACTACCCATACCAGTACATCCTCAATCTACAACGACTTGAATACTTTGCTAACCAAGCATGGCCTCCAATGCCTTCCCCCCATGTCAGAAAATGGTCAACTTGGAATAACCTTCCACCAGAAGTTCTCCAGTGGGTCAACACAGAACTCTTCATGGTACGTAAAGATACAGCCAGAGATGTCTTCTCAGTAG
Protein Sequence MESHTYTPCSSSGKGSAFVIQNTLTSPYRLIPITQTSQNQETSKTFTNTSPRMETTSSSEKSQDSTLEKDLERWILENTSKSPTPEKNSSTSSKPTTHTSTSSIYNDLNTLLTKHGLQCLPPMSENGQLGITFHQKFSSGSTQNSSWYVKIQPEMSSQ

References More References in PubMed

1

Characterization of Prunus-infecting apricot latent virus-like Foveaviruses: evolutionary and taxonomic implications.

Youssef F, et al.  Virus Res. 2011 Feb;155(2):440-5. doi: 10.1016/j.virusres.2010.11.013. Epub 2010 Dec 7.

PMID: 21144869

2

Updating the Quarantine Status of Prunus Infecting Viruses in Australia.

Kinoti WM, et al.  Viruses. 2020 Feb 23;12(2):246. doi: 10.3390/v12020246.

PMID: 32102210

3

A remarkable synergistic effect at the transcriptomic level in peach fruits doubly infected by prunus necrotic ringspot virus and peach latent mosaic viroid.

Herranz MC, et al.  Virol J. 2013 May 28;10:164. doi: 10.1186/1743-422X-10-164.

PMID: 23710752

4

Identification of divergent isolates of cherry latent virus 1 in Greek sweet cherry orchards.

Orfanidou CG, et al.  Arch Virol. 2023 Sep 7;168(10):243. doi: 10.1007/s00705-023-05875-7.

PMID: 37676309

5

First Report of Cherry virus A in Prunus mume in China.

Marais A, et al.  Plant Dis. 2008 Nov;92(11):1589. doi: 10.1094/PDIS-92-11-1589A.

PMID: 30764450

6

The Diversity of Strawberry latent ringspot virus in New Zealand.

Tang J, et al.  Plant Dis. 2013 May;97(5):662-667. doi: 10.1094/PDIS-07-12-0703-RE.

PMID: 30722200

7

First Report of Apricot latent virus and Plum bark necrosis stem pitting-associated virus in Apricot from Spain.

García-Ibarra A, et al.  Plant Dis. 2010 Feb;94(2):275. doi: 10.1094/PDIS-94-2-0275A.

PMID: 30754285

8

Apricot latent virus: a new species in the genus Foveavirus.

Nemchinov LG, et al.  Arch Virol. 2000;145(9):1801-13. doi: 10.1007/s007050070057.

PMID: 11043942

9

Discovery and molecular characterization of a novel trichovirus infecting sweet cherry.

Brewer E, et al.  Virus Genes. 2020 Jun;56(3):380-385. doi: 10.1007/s11262-020-01743-7. Epub 2020 Feb 17.

PMID: 32065328

10

Viromes of Hungarian Peach Trees Identified by High-Throughput Sequencing of Small RNAs.

Barath D, et al.  Plants (Basel). 2022 Jun 16;11(12):1591. doi: 10.3390/plants11121591.

PMID: 35736743