Prunus latent virus
Basic Information
| Genus | Grablovirus |
|---|---|
| NCBI Assembly | GCF_004788535.1 |
| Isolate | USA |
| Release date | 2019/6/28 |
| Submitter | Al Rwahnih,M., Alabi,O., Westrick,N., Golino,D. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_043533
Gene Information
| NCBI Accession | YP_009666818.1 |
|---|---|
| Location | 258-788 |
| Protein Name | V2 Protein |
| Coding Region | ATGCCAAGCCAAAGCTATCCAGTTCCAAAGATGCGACGCAGACGTCTGGACCTTCCTCAGACGTCTACGGGCAGCATCAGTTCTAGCGATAGCGGTAGTGATGTCAATATTGATGTTATACGTGATGCTTCGTTTGATGGTGGTTTGTCTGGGAATGATTCTCGCAGGAGACATGTAGTCTCCGTTGCGAATGATTTGTTAGCTGATGATCCTGATGCAACGATTCTTGATTTGTCGTTGCCCTCTGTTCTCTGGTTTTGTACTCAAAGGTATTTGTCTTGTTGTGTAAGGAAGGAATTTGTCCCTTTGCCAGGTATTTCGGATACGCAATTGATCGCTGTTAGGCGTTTGATTAGACGAGTTTCTCGTCGTCACTGCTTGTTTACCTACAAGTGCGAGGAGTGGTTTGAAGGTTGTTACAGGATAAAGCAATATGGTATTGAAGAGGCGACCGAGTCGTCGATATCGCAGGGCCACGAAGAAACGGAGTGGGAGAAGTTCACAAAGGAAGCGGCGTGCACGGCCACGTAG |
| Protein Sequence | MPSQSYPVPKMRRRRLDLPQTSTGSISSSDSGSDVNIDVIRDASFDGGLSGNDSRRRHVVSVANDLLADDPDATILDLSLPSVLWFCTQRYLSCCVRKEFVPLPGISDTQLIAVRRLIRRVSRRHCLFTYKCEEWFEGCYRIKQYGIEEATESSISQGHEETEWEKFTKEAACTAT |
| NCBI Accession | YP_009666819.1 |
|---|---|
| Location | 691-1365 |
| Protein Name | CP/V1 Protein |
| Coding Region | ATGGTATTGAAGAGGCGACCGAGTCGTCGATATCGCAGGGCCACGAAGAAACGGAGTGGGAGAAGTTCACAAAGGAAGCGGCGTGCACGGCCACGTAGTAGGCCCTGTCAGTTTTCGTTCCATGGAAATGCGTTTGGTGGTACACCAACGCTTTTCTTTTTGACACCCATTGCTCTTGGCAATGGTGCTGAAGACAGAACTGGCTCAGTGCTTACTGTCAGTAGTATGTATTTGAAGGGTGTTGTGGTTCCGACGGACAATGTCACTGACGGTCTTCATGATATTTATTTTTGGATTATATTGGACAGGTTTCCTACTGGCACAGATCCTGCTGTTTCTGATATATTTACTGGCAGTGATACTGGAGGTAGCATGATTGAGACATTGACTAGGAATCGTTTGAATCGTAAGAGGTTTCGTATTCTGGGCTCGAAGAAACTTGTGATTGGAGTTAACAGAAAGCCACAAGAGTCTTTGCCTCATACTCGTGCTGCGTTTAATATCTTCCAAAGACGGCGGTTAGTTGTTGCATTTAAGAATGATGTTTCTGGTGGTGGTAGGAATGATGTTGAGCGTAATCGCATATATATGGCGTGTGCTTCTGCTACCGGACATTCTTTCCGGCTATATCTTAATGGGATTGTTAATTTCTATAATGGTGTTATTTTTTCATAG |
| Protein Sequence | MVLKRRPSRRYRRATKKRSGRSSQRKRRARPRSRPCQFSFHGNAFGGTPTLFFLTPIALGNGAEDRTGSVLTVSSMYLKGVVVPTDNVTDGLHDIYFWIILDRFPTGTDPAVSDIFTGSDTGGSMIETLTRNRLNRKRFRILGSKKLVIGVNRKPQESLPHTRAAFNIFQRRRLVVAFKNDVSGGGRNDVERNRIYMACASATGHSFRLYLNGIVNFYNGVIFS |
| NCBI Accession | YP_009666820.1 |
|---|---|
| Location | 1229-1717 |
| Protein Name | V3 Protein |
| Coding Region | ATGATGTTTCTGGTGGTGGTAGGAATGATGTTGAGCGTAATCGCATATATATGGCGTGTGCTTCTGCTACCGGACATTCTTTCCGGCTATATCTTAATGGGATTGTTAATTTCTATAATGGTGTTATTTTTTCATAGACCACGCTGTTTGATATGGCGTGTGTATGATCAAGTTTCTGAGGTTGGTTTATACGATGGTTATGATGATGTTGTTAAAGATATACCCATTGATGGGGATGATGATGAGTCGTATATGGTTTCCGATGAGTATGCTGAATTCCTTGAGACGTTGAAGAGACGTCGTTCTGAGCGTGGAGGGATGACTTCCAACTTGAAGCGAAGAAGAGTGATGGTTGATCCTGATGAAGATCTTGTTAATCGTTTGAAGGAGTATTTGGGTGAAGATGAGTATGATAGACATCGTAGACGACTGGACTTAGAACTTGGTTCTGGTCAACATAGACCAGACAGTCGTTGTGTTGTAATGTGA |
| Protein Sequence | MMFLVVVGMMLSVIAYIWRVLLLPDILSGYILMGLLISIMVLFFHRPRCLIWRVYDQVSEVGLYDGYDDVVKDIPIDGDDDESYMVSDEYAEFLETLKRRRSERGGMTSNLKRRRVMVDPDEDLVNRLKEYLGEDEYDRHRRRLDLELGSGQHRPDSRCVVM |
| NCBI Accession | YP_009666821.1 |
|---|---|
| Location | 1876-2271 |
| Protein Name | RepB/C2 Protein |
| Coding Region | ATGTGGCAGGAGACGAACCAGCGGAAGAAGTCACTAGTGATTGAAGGCCCATCAAGAACAGGGAAAACTCAATGGGCAAGATCATTAGGACCACACAACTACTGGGCAGAAACAGTTGACTTCAGCATGTACGATGACAAAGCATTATATAATGTAATAGACGATATACCATTTCAATATCTTCCGTGCAAGAAAGCGCTATTAGGCTGCCAACATAACTACATAGCGAATGAGAAATACCGGAAGAAACAAACAATCAAAGGGGGTATACCAGCAATAGTGCTGTGTAACCCCGACCAATCATATGAAGACGCAATTACAAATTGGCATGCCAGTTTTAAGCCTTGGGCAGAGGATAATATCATCTTTGTCAAAATAAATTCAAGCTTGTACTGA |
| Protein Sequence | MWQETNQRKKSLVIEGPSRTGKTQWARSLGPHNYWAETVDFSMYDDKALYNVIDDIPFQYLPCKKALLGCQHNYIANEKYRKKQTIKGGIPAIVLCNPDQSYEDAITNWHASFKPWAEDNIIFVKINSSLY |
| NCBI Accession | YP_009666822.1 |
|---|---|
| Location | 2228-3016 |
| Protein Name | RepA/C1 Protein |
| Coding Region | ATGGCATCAACATCCTTCAATCTCAGATCAAAAAACTTCTTCCTAACCTATCCTCAGTGCCCAGTCATCAAACAATTTGCCCTTGATTTCTTCAAATCAAAGTTCACCAAAACACTTGAATACGCCCTCGTCAGCCAAGAAAAACACCAAGATGGAGAGCCACACCTACACGCCTTGCTCATCTTCAGGAAAAGGCAGTGCATTCGTAATCCAAAACACTTTGACATCACCGTATCGTCTCATTCCTATCACCCAAACATCACAAAACCAAGAAACGTCAAAGACGTTCACGAATACGTCTCCAAGGATGGAGACCACATCGAGTTCGGAGAAAAGCCAAGACTCCACACTCGAGAAAGATCTAGAGAGGTGGATTTTGGAGAATACCTCAAAATCTCCAACACCAGAGAAGAATTCTTCAACCTCGTCAAAACCAACTACCCATACCAGTACATCCTCAATCTACAACGACTTGAATACTTTGCTAACCAAGCATGGCCTCCAATGCCTTCCCCCCATGTCAGAAAATGGTCAACTTGGAATAACCTTCCACCAGAAGTTCTCCAGTGGGTCAACACAGAACTCTTCATGGTACGTAAAGATACAGCCAGAGATGTCTTCTCAGTAGCACAACAAAATATCATGCATCATGAAACATACAATGTCAAAGCTATAATAGATGACATGGTAGACACACACTACATAGAGTACATGGAAAGGCTGTACGAGTCTGATAACGTAACGGATGTGGCAGGAGACGAACCAGCGGAAGAAGTCACTAGTGATTGA |
| Protein Sequence | MASTSFNLRSKNFFLTYPQCPVIKQFALDFFKSKFTKTLEYALVSQEKHQDGEPHLHALLIFRKRQCIRNPKHFDITVSSHSYHPNITKPRNVKDVHEYVSKDGDHIEFGEKPRLHTRERSREVDFGEYLKISNTREEFFNLVKTNYPYQYILNLQRLEYFANQAWPPMPSPHVRKWSTWNNLPPEVLQWVNTELFMVRKDTARDVFSVAQQNIMHHETYNVKAIIDDMVDTHYIEYMERLYESDNVTDVAGDEPAEEVTSD |
| NCBI Accession | YP_009666823.1 |
|---|---|
| Location | 2389-2865 |
| Protein Name | C3 Protein |
| Coding Region | ATGGAGAGCCACACCTACACGCCTTGCTCATCTTCAGGAAAAGGCAGTGCATTCGTAATCCAAAACACTTTGACATCACCGTATCGTCTCATTCCTATCACCCAAACATCACAAAACCAAGAAACGTCAAAGACGTTCACGAATACGTCTCCAAGGATGGAGACCACATCGAGTTCGGAGAAAAGCCAAGACTCCACACTCGAGAAAGATCTAGAGAGGTGGATTTTGGAGAATACCTCAAAATCTCCAACACCAGAGAAGAATTCTTCAACCTCGTCAAAACCAACTACCCATACCAGTACATCCTCAATCTACAACGACTTGAATACTTTGCTAACCAAGCATGGCCTCCAATGCCTTCCCCCCATGTCAGAAAATGGTCAACTTGGAATAACCTTCCACCAGAAGTTCTCCAGTGGGTCAACACAGAACTCTTCATGGTACGTAAAGATACAGCCAGAGATGTCTTCTCAGTAG |
| Protein Sequence | MESHTYTPCSSSGKGSAFVIQNTLTSPYRLIPITQTSQNQETSKTFTNTSPRMETTSSSEKSQDSTLEKDLERWILENTSKSPTPEKNSSTSSKPTTHTSTSSIYNDLNTLLTKHGLQCLPPMSENGQLGITFHQKFSSGSTQNSSWYVKIQPEMSSQ |
References More References in PubMed
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Youssef F, et al. Virus Res. 2011 Feb;155(2):440-5. doi: 10.1016/j.virusres.2010.11.013. Epub 2010 Dec 7. PMID: 21144869 |
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| 2 |
Updating the Quarantine Status of Prunus Infecting Viruses in Australia. Kinoti WM, et al. Viruses. 2020 Feb 23;12(2):246. doi: 10.3390/v12020246. PMID: 32102210 |
| 3 |
Herranz MC, et al. Virol J. 2013 May 28;10:164. doi: 10.1186/1743-422X-10-164. PMID: 23710752 |
| 4 |
Identification of divergent isolates of cherry latent virus 1 in Greek sweet cherry orchards. Orfanidou CG, et al. Arch Virol. 2023 Sep 7;168(10):243. doi: 10.1007/s00705-023-05875-7. PMID: 37676309 |
| 5 |
First Report of Cherry virus A in Prunus mume in China. Marais A, et al. Plant Dis. 2008 Nov;92(11):1589. doi: 10.1094/PDIS-92-11-1589A. PMID: 30764450 |
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The Diversity of Strawberry latent ringspot virus in New Zealand. Tang J, et al. Plant Dis. 2013 May;97(5):662-667. doi: 10.1094/PDIS-07-12-0703-RE. PMID: 30722200 |
| 7 |
García-Ibarra A, et al. Plant Dis. 2010 Feb;94(2):275. doi: 10.1094/PDIS-94-2-0275A. PMID: 30754285 |
| 8 |
Apricot latent virus: a new species in the genus Foveavirus. Nemchinov LG, et al. Arch Virol. 2000;145(9):1801-13. doi: 10.1007/s007050070057. PMID: 11043942 |
| 9 |
Discovery and molecular characterization of a novel trichovirus infecting sweet cherry. Brewer E, et al. Virus Genes. 2020 Jun;56(3):380-385. doi: 10.1007/s11262-020-01743-7. Epub 2020 Feb 17. PMID: 32065328 |
| 10 |
Viromes of Hungarian Peach Trees Identified by High-Throughput Sequencing of Small RNAs. Barath D, et al. Plants (Basel). 2022 Jun 16;11(12):1591. doi: 10.3390/plants11121591. PMID: 35736743 |