Grapevine red blotch virus

Basic Information

Genus Grablovirus
NCBI Assembly GCF_000909815.1
Isolate USA
Release date 2015/2/22
Submitter Al Rwahnih,M., Dave,A., Anderson,M.M., Rowhani,A., Uyemoto,J.K., Sudarshana,M.R., Sudarshana,M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_022002
ACTGGCACTTCCCATGGTACGTGGTATTCTTGCGGAGCAAGTTTCTCTACTTTGGCAAATGCTTCTGATTGGTTGGTGTGGAATTTATTCTTTTCTTTTGTCGGCCACTTGCGTGGCTTTTACGCGAAGCTAAAGTGGCCGCATATATGTTTTTTAGTTAGGGCATATTATTAATGGAGGATCGATGCGGGTGGAAACGCACTTTGGCTGTTGTGCTAATTTCTCTCTCAATATTTTGGGTGTTGTACTGGTTAGTATTCTTCTCTCGTCCCATTTGTAAGAGGAATCGGAATGGTAACACTGAACAAACGGAATCGCGTTCTTCCTGAGTGCGATTCCTGCAGTTCTAGTGAAAGTTCTTTGAATGATATTGATATTTGTGGTGATGATGATGGGTTAGGGGATGAGGCTTTAGACGCTGGATCCGTTTATTCGTCGTCACAGAAACTGTTAGTTTCTGTGGCTAAAGATGTTCTTTTAGATGACTGTGATTCAACGATATTGGATATATCGTTGCCTTCTGCTTTATGGTTTTTGTCGCAAAGATATTTGACTTGTTGTTTGAGGAAAGAATTACTGCCTCTGCCAGGTATATCCGAGAAACAGACTGTTTTATTGCGACAGCTGATTAGGCGTGTCGCTCGTCGTCATTGTTTATTTACTTACAAGTGCGAGGAGTGGTTTGAGGGTTGTTTGAAGATAAAGAAGGATGGTAATGAAAAAAAGGAGCCGCCAACGGAAGCAGAGAAGAAGGCGCAGGACGACTGGGAGGAGTTCTGCCGTAAGGCGGCGTGCTCGGCCTCGTAGTAGGCCTTGTCAGTTTGCATTCCATGGGAATTCTTTTGGGGGTACCCCTTCCCTTTTTTTTTTGACTCCGATTGCTTTAGGTACTGGTGCGGAAGACAGAACAGGTCCAGTATTGACTGTCAGCAGTATGTATTTGAAAGGTGTTGTGCTTCCGTCGGATAATGTCACCGATGGATTGCATGATATTTATTTTTGGATAATTTTGGATCGGTTTCCTACTGGAACTGATCCTTCGGTATCTGATATATTCACTGGTAGTGATAACAGCGGAAGCATGATTGAGACATTAACGAGGAATCGTTTGAATCGTAAGAGATTTCGTATTTTGGGTTCGAAGAAACTTGTTGTTGGCGTGAATAAGAAGCCGCAGGAGTCATTGCCACATTCACGTGCAGCATTTAATATTTTTCAAAGACGTCGTCTGGTTGTCGCTTTTAAAAACGACGTGTCTGGTGGAGGACGTAATGATGTTGAAAGGAATCGTATTTATTTGTCTGCGGCTTCTGCAAGTGGACATACGTTTAGATTGTATCTAAATGGAATTGTAAACTTTTATAATGGAGTTATTTTTCAATAGACCACGCTGTTTATTATGGCGTGTGTATGATCAAGTTTCTGAGTTTGGTTTGTATGATGGTGGTGAAGATGTTGATATCCCCATTGTTGGGGATGATGAAGATGAAGAAATGGTTACAACTGGATATGGTGAATTCGTTAAGACGTTGAAGAGACGTCGATCTGAGCGCGGAGAGGTGACAAAGACTTACAAGCGAAGAATTGCATTGACTGAACCTGATCGTAGTAGAACTGAAGTTGAAGAATTGAGAGATTATTTGTTAGAGGAAGATTATGATAAGCATAGAAGACGTCTGGACCTGGAGCTAGGCTCAGGCTTGCATAGTCCAGACAGTCGTTGTACAGTAATGTGAATGTTGTATTTGGATATTTGAATAATAGAATATGGTGCAGGAGTTTATTAAAATTATAATGTAAACACTTCGAAATAAATCACACTTCAATACCAGACAATCAGGCACGATTTCTTTATGAAAGAACCCAGCCGCGAAGCGGCTGGCTGACCTTTTATTTATCAGTACAACGGTCTATCAATTTTTACAAAGATAATGTTTTCTTCAGCCCACGGCTTGAATGTTGCATGCCAATTGGTGATTGCATCATAGTAAGAGTTATCTGGATTACAAAGAACAATTGATGGGATCCCTCCTTTGATTTTCCGCTTTGGACGATATTTTTCATTTGCAATGTAATTGAATTGACAACCTAATAAGGCTTTTTTACAAGGCAAATATTGGAATGGTATATCGTCAATAATATTGTACAAAGCGTCGTCTATGTATAGACTGAAGTCTACTGATTCACACCAGTAGTTATGTATTCCCAATGATATAGCCCATTGCGTTTTACCCGTCTTCGATGGTCCTTCAATCACCAGGCTCTTCCTCCTTCGGTGCGTCGCTTCCTGCATTGTTGAGTTCATCGTCAGTGTTATATATTCTTTCAACATAATCCAAGTAATACGCGTCCAGCTTGTCGTCTATTATATGCTGGACGCGTTTTGTTTCTTGTTCAAGGAAATTGTTTATTCCTGGTCCAAGGTTTCGTTGTGCTGAGCTTTTGCGTACCACGTAGAGTTCGTTTTGGACCCAGAGATGAATTTCTGGTGGAAGGTTATTCCAAGCTGTCCACTGATTGGCATGTGGGGTAGGGGTGGGAGGCCATGTTTGAGCAGCAAAGTATTCAAGTCGTTGTAGATTGAGGACGTATTGGTAGGGGTAATGTTGTTTGACGAGTTGCAGAAACTCGTCTTTGGAATTTGCAACTCGTAGGAATTCTCCAAAATCCAGTTCTCTGGATTGCTTCTTTGATTTGAGAGTTGGCTTTGTACCGTGCTCGACGGTATCTCCTTCTTTTCCGACGTAATTAAGCACGTCGGCGACATCTCTGGGCTTTGTGATATTGGGGTGATAGGAATGAGACGATATGGTGATGTCAAAGTGTTTTGGATTGCGAATAGCCTGTCGTTTTTTGAAGATGAGCAAGGCGTGTAGGTGTGGCTCGCCATTCTGATGTTTTTCTTCTCCGATGAGAGCGTAATCTAGGGTTTTTTGGAACTTGGATTTGAAGAAGTCTAGGGCAAACTGTTTATGGACTGGGCACTGAGGGTATGTGAGGAAGAAGTTTTTTGAGCGGAGATTGAAGGAGCTACTTGATGCCATCTTGGTTGTATAAGATGGGTTGGTACTCTTTATATAGTGGTTGATTAGATGACATCAGGTGATGTCAGCTATTTTGTTTTATTATCCCTCAATTCTAGCTTATAGTTTTGGTGGTATTTTGGTACTCAGGGCAAAATTTGTATTGAAGTGCCATATAATATT

Gene Information

NCBI Accession YP_008400113.1
Location 292-807
Protein Name V2 protein
Coding Region ATGGTAACACTGAACAAACGGAATCGCGTTCTTCCTGAGTGCGATTCCTGCAGTTCTAGTGAAAGTTCTTTGAATGATATTGATATTTGTGGTGATGATGATGGGTTAGGGGATGAGGCTTTAGACGCTGGATCCGTTTATTCGTCGTCACAGAAACTGTTAGTTTCTGTGGCTAAAGATGTTCTTTTAGATGACTGTGATTCAACGATATTGGATATATCGTTGCCTTCTGCTTTATGGTTTTTGTCGCAAAGATATTTGACTTGTTGTTTGAGGAAAGAATTACTGCCTCTGCCAGGTATATCCGAGAAACAGACTGTTTTATTGCGACAGCTGATTAGGCGTGTCGCTCGTCGTCATTGTTTATTTACTTACAAGTGCGAGGAGTGGTTTGAGGGTTGTTTGAAGATAAAGAAGGATGGTAATGAAAAAAAGGAGCCGCCAACGGAAGCAGAGAAGAAGGCGCAGGACGACTGGGAGGAGTTCTGCCGTAAGGCGGCGTGCTCGGCCTCGTAG
Protein Sequence MVTLNKRNRVLPECDSCSSSESSLNDIDICGDDDGLGDEALDAGSVYSSSQKLLVSVAKDVLLDDCDSTILDISLPSALWFLSQRYLTCCLRKELLPLPGISEKQTVLLRQLIRRVARRHCLFTYKCEEWFEGCLKIKKDGNEKKEPPTEAEKKAQDDWEEFCRKAACSAS

NCBI Accession YP_008400114.1
Location 710-1384
Protein Name V1 protein
Coding Region ATGGTAATGAAAAAAAGGAGCCGCCAACGGAAGCAGAGAAGAAGGCGCAGGACGACTGGGAGGAGTTCTGCCGTAAGGCGGCGTGCTCGGCCTCGTAGTAGGCCTTGTCAGTTTGCATTCCATGGGAATTCTTTTGGGGGTACCCCTTCCCTTTTTTTTTTGACTCCGATTGCTTTAGGTACTGGTGCGGAAGACAGAACAGGTCCAGTATTGACTGTCAGCAGTATGTATTTGAAAGGTGTTGTGCTTCCGTCGGATAATGTCACCGATGGATTGCATGATATTTATTTTTGGATAATTTTGGATCGGTTTCCTACTGGAACTGATCCTTCGGTATCTGATATATTCACTGGTAGTGATAACAGCGGAAGCATGATTGAGACATTAACGAGGAATCGTTTGAATCGTAAGAGATTTCGTATTTTGGGTTCGAAGAAACTTGTTGTTGGCGTGAATAAGAAGCCGCAGGAGTCATTGCCACATTCACGTGCAGCATTTAATATTTTTCAAAGACGTCGTCTGGTTGTCGCTTTTAAAAACGACGTGTCTGGTGGAGGACGTAATGATGTTGAAAGGAATCGTATTTATTTGTCTGCGGCTTCTGCAAGTGGACATACGTTTAGATTGTATCTAAATGGAATTGTAAACTTTTATAATGGAGTTATTTTTCAATAG
Protein Sequence MVMKKRSRQRKQRRRRRTTGRSSAVRRRARPRSRPCQFAFHGNSFGGTPSLFFLTPIALGTGAEDRTGPVLTVSSMYLKGVVLPSDNVTDGLHDIYFWIILDRFPTGTDPSVSDIFTGSDNSGSMIETLTRNRLNRKRFRILGSKKLVVGVNKKPQESLPHSRAAFNIFQRRRLVVAFKNDVSGGGRNDVERNRIYLSAASASGHTFRLYLNGIVNFYNGVIFQ

NCBI Accession YP_008400115.1
Location 1365-1736
Protein Name V3 protein
Coding Region ATGGAGTTATTTTTCAATAGACCACGCTGTTTATTATGGCGTGTGTATGATCAAGTTTCTGAGTTTGGTTTGTATGATGGTGGTGAAGATGTTGATATCCCCATTGTTGGGGATGATGAAGATGAAGAAATGGTTACAACTGGATATGGTGAATTCGTTAAGACGTTGAAGAGACGTCGATCTGAGCGCGGAGAGGTGACAAAGACTTACAAGCGAAGAATTGCATTGACTGAACCTGATCGTAGTAGAACTGAAGTTGAAGAATTGAGAGATTATTTGTTAGAGGAAGATTATGATAAGCATAGAAGACGTCTGGACCTGGAGCTAGGCTCAGGCTTGCATAGTCCAGACAGTCGTTGTACAGTAATGTGA
Protein Sequence MELFFNRPRCLLWRVYDQVSEFGLYDGGEDVDIPIVGDDEDEEMVTTGYGEFVKTLKRRRSERGEVTKTYKRRIALTEPDRSRTEVEELRDYLLEEDYDKHRRRLDLELGSGLHSPDSRCTVM

NCBI Accession YP_008400116.1
Location 1898-2332
Protein Name C2 protein
Coding Region ATGTTGAAAGAATATATAACACTGACGATGAACTCAACAATGCAGGAAGCGACGCACCGAAGGAGGAAGAGCCTGGTGATTGAAGGACCATCGAAGACGGGTAAAACGCAATGGGCTATATCATTGGGAATACATAACTACTGGTGTGAATCAGTAGACTTCAGTCTATACATAGACGACGCTTTGTACAATATTATTGACGATATACCATTCCAATATTTGCCTTGTAAAAAAGCCTTATTAGGTTGTCAATTCAATTACATTGCAAATGAAAAATATCGTCCAAAGCGGAAAATCAAAGGAGGGATCCCATCAATTGTTCTTTGTAATCCAGATAACTCTTACTATGATGCAATCACCAATTGGCATGCAACATTCAAGCCGTGGGCTGAAGAAAACATTATCTTTGTAAAAATTGATAGACCGTTGTACTGA
Protein Sequence MLKEYITLTMNSTMQEATHRRRKSLVIEGPSKTGKTQWAISLGIHNYWCESVDFSLYIDDALYNIIDDIPFQYLPCKKALLGCQFNYIANEKYRPKRKIKGGIPSIVLCNPDNSYYDAITNWHATFKPWAEENIIFVKIDRPLY

NCBI Accession YP_008400117.1
Location 2250-3044
Protein Name C1 protein
Coding Region ATGGCATCAAGTAGCTCCTTCAATCTCCGCTCAAAAAACTTCTTCCTCACATACCCTCAGTGCCCAGTCCATAAACAGTTTGCCCTAGACTTCTTCAAATCCAAGTTCCAAAAAACCCTAGATTACGCTCTCATCGGAGAAGAAAAACATCAGAATGGCGAGCCACACCTACACGCCTTGCTCATCTTCAAAAAACGACAGGCTATTCGCAATCCAAAACACTTTGACATCACCATATCGTCTCATTCCTATCACCCCAATATCACAAAGCCCAGAGATGTCGCCGACGTGCTTAATTACGTCGGAAAAGAAGGAGATACCGTCGAGCACGGTACAAAGCCAACTCTCAAATCAAAGAAGCAATCCAGAGAACTGGATTTTGGAGAATTCCTACGAGTTGCAAATTCCAAAGACGAGTTTCTGCAACTCGTCAAACAACATTACCCCTACCAATACGTCCTCAATCTACAACGACTTGAATACTTTGCTGCTCAAACATGGCCTCCCACCCCTACCCCACATGCCAATCAGTGGACAGCTTGGAATAACCTTCCACCAGAAATTCATCTCTGGGTCCAAAACGAACTCTACGTGGTACGCAAAAGCTCAGCACAACGAAACCTTGGACCAGGAATAAACAATTTCCTTGAACAAGAAACAAAACGCGTCCAGCATATAATAGACGACAAGCTGGACGCGTATTACTTGGATTATGTTGAAAGAATATATAACACTGACGATGAACTCAACAATGCAGGAAGCGACGCACCGAAGGAGGAAGAGCCTGGTGATTGA
Protein Sequence MASSSSFNLRSKNFFLTYPQCPVHKQFALDFFKSKFQKTLDYALIGEEKHQNGEPHLHALLIFKKRQAIRNPKHFDITISSHSYHPNITKPRDVADVLNYVGKEGDTVEHGTKPTLKSKKQSRELDFGEFLRVANSKDEFLQLVKQHYPYQYVLNLQRLEYFAAQTWPPTPTPHANQWTAWNNLPPEIHLWVQNELYVVRKSSAQRNLGPGINNFLEQETKRVQHIIDDKLDAYYLDYVERIYNTDDELNNAGSDAPKEEEPGD

NCBI Accession YP_008400118.1
Location 2408-2890
Protein Name C3 protein
Coding Region ATGGCGAGCCACACCTACACGCCTTGCTCATCTTCAAAAAACGACAGGCTATTCGCAATCCAAAACACTTTGACATCACCATATCGTCTCATTCCTATCACCCCAATATCACAAAGCCCAGAGATGTCGCCGACGTGCTTAATTACGTCGGAAAAGAAGGAGATACCGTCGAGCACGGTACAAAGCCAACTCTCAAATCAAAGAAGCAATCCAGAGAACTGGATTTTGGAGAATTCCTACGAGTTGCAAATTCCAAAGACGAGTTTCTGCAACTCGTCAAACAACATTACCCCTACCAATACGTCCTCAATCTACAACGACTTGAATACTTTGCTGCTCAAACATGGCCTCCCACCCCTACCCCACATGCCAATCAGTGGACAGCTTGGAATAACCTTCCACCAGAAATTCATCTCTGGGTCCAAAACGAACTCTACGTGGTACGCAAAAGCTCAGCACAACGAAACCTTGGACCAGGAATAA
Protein Sequence MASHTYTPCSSSKNDRLFAIQNTLTSPYRLIPITPISQSPEMSPTCLITSEKKEIPSSTVQSQLSNQRSNPENWILENSYELQIPKTSFCNSSNNITPTNTSSIYNDLNTLLLKHGLPPLPHMPISGQLGITFHQKFISGSKTNSTWYAKAQHNETLDQE

References More References in PubMed

1

Grapevine Red Blotch-Associated Virus, an Emerging Threat to the Grapevine Industry.

Sudarshana MR, et al.  Phytopathology. 2015 Jul;105(7):1026-32. doi: 10.1094/PHYTO-12-14-0369-FI. Epub 2015 Jun 25.

PMID: 25738551
2

Grapevine red blotch virus C2 and V2 are suppressors of post-transcriptional gene silencing.

Weligodage HS, et al.  Heliyon. 2023 Mar 17;9(3):e14528. doi: 10.1016/j.heliyon.2023.e14528. eCollection 2023 Mar.

PMID: 36967958
3

Grapevine red blotch virus alters grape skin cell-wall composition impacting phenolic extractability during winemaking.

Rumbaugh A, et al.  J Sci Food Agric. 2023 May;103(7):3457-3467. doi: 10.1002/jsfa.12481. Epub 2023 Feb 20.

PMID: 36727418
4

Transmission of Grapevine Red Blotch Virus by Spissistilus festinus [Say, 1830] (Hemiptera: Membracidae) between Free-Living Vines and Vitis vinifera 'Cabernet Franc'.

Hoyle V, et al.  Viruses. 2022 May 26;14(6):1156. doi: 10.3390/v14061156.

PMID: 35746628
5

Investigating Grapevine Red Blotch Virus Infection in Vitis vinifera L. cv. Cabernet Sauvignon Grapes: A Multi-Omics Approach.

Rumbaugh AC, et al.  Int J Mol Sci. 2022 Oct 31;23(21):13248. doi: 10.3390/ijms232113248.

PMID: 36362035
6

Causative Role of Grapevine Red Blotch Virus in Red Blotch Disease.

Yepes LM, et al.  Phytopathology. 2018 Jul;108(7):902-909. doi: 10.1094/PHYTO-12-17-0419-R. Epub 2018 May 17.

PMID: 29436986
7

Phenotyping grapevine red blotch virus and grapevine leafroll-associated viruses before and after symptom expression through machine-learning analysis of hyperspectral images.

Sawyer E, et al.  Front Plant Sci. 2023 Mar 10;14:1117869. doi: 10.3389/fpls.2023.1117869. eCollection 2023.

PMID: 36968421
8

Spatiotemporal spread of grapevine red blotch-associated virus in a California vineyard.

Cieniewicz EJ, et al.  Virus Res. 2017 Sep 15;241:156-162. doi: 10.1016/j.virusres.2017.03.020. Epub 2017 Apr 7.

PMID: 28392444
9

Grapevine Red Blotch Virus Is Transmitted by the Three-Cornered Alfalfa Hopper in a Circulative, Nonpropagative Mode with Unique Attributes.

Flasco M, et al.  Phytopathology. 2021 Oct;111(10):1851-1861. doi: 10.1094/PHYTO-02-21-0061-R. Epub 2021 Nov 9.

PMID: 33736453
10

Absolute Quantification of Grapevine Red Blotch Virus in Grapevine Leaf and Petiole Tissues by Proteomics.

Buchs N, et al.  Front Plant Sci. 2018 Nov 29;9:1735. doi: 10.3389/fpls.2018.01735. eCollection 2018.

PMID: 30555495