Chayote yellow mosaic virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000859865.1 |
| Isolate |
Nigeria: Ibadan |
| Release date |
2015/2/13 |
| Submitter |
Thottappilly,G., Winter,S., Maxwell,D., Kamal,S. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCCCGCTATTTTACAGCCGTACACGTGTCCCAGATGTACGCTTTAACCGAAAGAAGTGGTCCCGCCCACTATCCGATGTCGGCCAATAGCAACGAACCCTCGTGTCTATATGTTTTTACTTTGTCCTTATATACTTGGTCCCCACCCAAGCATTATTGCAATATGTGGGATCCACTGCTAAATGAATTTCCGGATTCCGTCCATGGGTTTCGTTGTATGTTGGCCGTAAAGTATCTGCAGGCCGTGGAGGATACGTACGAGCCCAATACATTGGGCCACGATTTAGTCCGAGATTTGATATCCGTGATACGGGCCAGGGACTATGTCGAAGCGACCCGCAGATATCATCATTTCCACGCCCGTTTCGAAGGTGCGTCGAAGGCTGAACTTCGACAGCCCATATACCAACCGTGTTGCTGTCCCCATTGTCCAAGGCACAAACAAACGACGGTCATGGACCTACCGGCCCAGTTACCGAAAGCCCAGAATGTACAGGATGTACAGAAGTCCTGATGTTCCTCGAGGTTGTGAGGGTCCATGTAAGATCCAGTCGTTTGATCAGCGCGATTCCGTTGTACATACCGGTAACGTTAGGTGTCTTAGCGATGTCACTAGGGGTGGGGGTCTTACCCACCGTACCGGCAAACGTTTCTGTATTAAGTCCGTGTATGTACTAGGTAAGGTTTGGATGGATGAGAATGTTAAGAAGTCCAACCATACTAACACGTGTCTGTTCTGGTTAGTTAGAGATAGACGTCCTTACGGAAGTAGTCCTCAGGACTTTGGTCAGGTATTTAACATGTTCGACAATGAACCCAGTACTGCAACGGTGATGAACGACAAGCGTGATCGCTACCAGGTCCTGAGACGGTTTCAGGTAACGGTTACAGGAGGACCTTCCGGATGTAAGGAGGCCGCTATTGTTAAGCGGTTTTTCCGCCTCAACCACCACGTGACTTACAACCATCAGGAAGCGGCTAAGTACGAGAATCACACCGAGAATGCATTATTACTATACATGGCATGCACGCATGCTTCCAACCCTGTCTATGCTAGTTTGAAAATACGTATGTATTTCTACGATTCGGTCATTAATTAATAAAGATTGAACTTTATTTCGTGATTCTCAATTACATCTATCGTCCCCGTAAGGACGTCGTTCAGTACATGAGCAACGGCTCTGACGACAAAATTAATTGAAATTACATGAACGCTATCTAGATACTTAAGCACTTGTGTCCTAAAGACTCTCAAGAAACGACCAGTCTGAGGACGTAAGGTCGTCCAGACTTGGAAGTTCAGGAAACACTTGTGAATCCCCAATGCTTTCCGGAGGTTGTGGTTGAACCGGATTTGAATTGATAATATGTCGTGGTTCGAGTTGAACGGCCTCTCTATGTGGTCGACTATCTTGAAATAGAGGGGATTTGTCAGCTCCCAGATAAAGACGGAATTCTGCGCTTGATGCGCAGTGATGAGTTCCCCTGTGCGCAAATCCATTCAATGCGCAGTCGATGTGCAGGTAGAATGAGCAGCCGCACTCGAGGTCAATCCTTTTGCGCCGAATGGCTTTCTTCTTCCCGATTCGGTGTTGAACTTTGATCGGCACTTGAGTAGAGCGGCTGGGTGAGCGTGCAGAAGGCGGCATTCTTTAGAGCCCAGGCTTTCAGAGAGATATTCTTATCTTCGTCCAAGTATTCTTTATATGAAGACGTCGGCCCTGGATTGCACAGGAAGATTGTCGGAATGCCGCCTTTAATTTGAATCGGCTTCCCGTACTTCGTGTTGCTTTGCCAGTCACGCTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTCATCAATGACGTTGTACCAAGCCGAATTGCTGTACACTTTTGGACTGAGGTCGAGATGTCCACACAAATAATTGTGTGGTCCCAATGAACGGGCCCACATTGTCTTGCCCGTCCGACTATCACCCTCGACTATTATACTACTCGGCCTCCACGGCCGCGCAGCGGCATCCATCACGTTCGCCGATGCCCATCGTTGAAGTTCATCAGGAACCTGAGTGAAGGAGGAAGCACAGAAGGGAGAAACATAAACCTCCGGAGGAGCTTGGAAGATCTTATCCAAATTAGCCTTGATATTATGATATTGAAATATATAATCTTTGGGGAGTTTCTCCTTAATAATAGCCAACGCAGCTTCAGCGGAACCTGCGTTTAACGCCTCGGCGGCTGCGTCATTAGCCTTATGGCAGCCGCCTCTAGCACTACGTCCGTCGACCTGGAACTCTCCCCACTCGATGCTATCACCGTCCTTCTCGATGTAGGACTTGACGTCGGAACACGACTTAGCTCCCTGAACGTTTGGATGGAAATGTGTTGATCGAGTTGGGGAGACCAGATCGAAGAATCGCTGATTTTGGCACTTGTATTTGCCCTCGAACTGAATGAGGGCATGCAGATGAGGTTGCCCATCCTCGTGTAACTCACGACAAACTTTGATGTATTTCTGGTTCGTGGGCGTGCGTAAGCTTCGTAATTGGGAAAGTGCTTCCTCCTTCGTGAGAGAGCACTGTGGATAAGTGAGGAAGTAATTCTTCGCATTTATTTGAAATCGCTTGGGAGGTGCCATTCTCTCTCCTCAACCGGTACTCAGCATAACTCTCCTATAAATCGGGTCCTCATATATAGTATGAGTACCAATGGCATATGTGTAATTTAGAAGACATATCTTTAATTCAAATCCCCCCTCTCGGCCATCCGTCTAATATT
Gene Information
|
NCBI Accession
|
NP_803405.1
|
|
Location
|
334-1110 |
|
Gene Name
|
cp |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCCGCAGATATCATCATTTCCACGCCCGTTTCGAAGGTGCGTCGAAGGCTGAACTTCGACAGCCCATATACCAACCGTGTTGCTGTCCCCATTGTCCAAGGCACAAACAAACGACGGTCATGGACCTACCGGCCCAGTTACCGAAAGCCCAGAATGTACAGGATGTACAGAAGTCCTGATGTTCCTCGAGGTTGTGAGGGTCCATGTAAGATCCAGTCGTTTGATCAGCGCGATTCCGTTGTACATACCGGTAACGTTAGGTGTCTTAGCGATGTCACTAGGGGTGGGGGTCTTACCCACCGTACCGGCAAACGTTTCTGTATTAAGTCCGTGTATGTACTAGGTAAGGTTTGGATGGATGAGAATGTTAAGAAGTCCAACCATACTAACACGTGTCTGTTCTGGTTAGTTAGAGATAGACGTCCTTACGGAAGTAGTCCTCAGGACTTTGGTCAGGTATTTAACATGTTCGACAATGAACCCAGTACTGCAACGGTGATGAACGACAAGCGTGATCGCTACCAGGTCCTGAGACGGTTTCAGGTAACGGTTACAGGAGGACCTTCCGGATGTAAGGAGGCCGCTATTGTTAAGCGGTTTTTCCGCCTCAACCACCACGTGACTTACAACCATCAGGAAGCGGCTAAGTACGAGAATCACACCGAGAATGCATTATTACTATACATGGCATGCACGCATGCTTCCAACCCTGTCTATGCTAGTTTGAAAATACGTATGTATTTCTACGATTCGGTCATTAATTAA |
|
Protein Sequence
|
MSKRPADIIISTPVSKVRRRLNFDSPYTNRVAVPIVQGTNKRRSWTYRPSYRKPRMYRMYRSPDVPRGCEGPCKIQSFDQRDSVVHTGNVRCLSDVTRGGGLTHRTGKRFCIKSVYVLGKVWMDENVKKSNHTNTCLFWLVRDRRPYGSSPQDFGQVFNMFDNEPSTATVMNDKRDRYQVLRRFQVTVTGGPSGCKEAAIVKRFFRLNHHVTYNHQEAAKYENHTENALLLYMACTHASNPVYASLKIRMYFYDSVIN |
|
NCBI Accession
|
NP_803406.1
|
|
Location
|
1107-1511 |
|
Gene Name
|
C3 |
|
Protein Name
|
C3 protein |
|
Coding Region
|
ATGGATTTGCGCACAGGGGAACTCATCACTGCGCATCAAGCGCAGAATTCCGTCTTTATCTGGGAGCTGACAAATCCCCTCTATTTCAAGATAGTCGACCACATAGAGAGGCCGTTCAACTCGAACCACGACATATTATCAATTCAAATCCGGTTCAACCACAACCTCCGGAAAGCATTGGGGATTCACAAGTGTTTCCTGAACTTCCAAGTCTGGACGACCTTACGTCCTCAGACTGGTCGTTTCTTGAGAGTCTTTAGGACACAAGTGCTTAAGTATCTAGATAGCGTTCATGTAATTTCAATTAATTTTGTCGTCAGAGCCGTTGCTCATGTACTGAACGACGTCCTTACGGGGACGATAGATGTAATTGAGAATCACGAAATAAAGTTCAATCTTTATTAA |
|
Protein Sequence
|
MDLRTGELITAHQAQNSVFIWELTNPLYFKIVDHIERPFNSNHDILSIQIRFNHNLRKALGIHKCFLNFQVWTTLRPQTGRFLRVFRTQVLKYLDSVHVISINFVVRAVAHVLNDVLTGTIDVIENHEIKFNLY |
|
NCBI Accession
|
NP_803407.1
|
|
Location
|
1252-1659 |
|
Gene Name
|
C2 |
|
Protein Name
|
C2 protein |
|
Coding Region
|
ATGCCGCCTTCTGCACGCTCACCCAGCCGCTCTACTCAAGTGCCGATCAAAGTTCAACACCGAATCGGGAAGAAGAAAGCCATTCGGCGCAAAAGGATTGACCTCGAGTGCGGCTGCTCATTCTACCTGCACATCGACTGCGCATTGAATGGATTTGCGCACAGGGGAACTCATCACTGCGCATCAAGCGCAGAATTCCGTCTTTATCTGGGAGCTGACAAATCCCCTCTATTTCAAGATAGTCGACCACATAGAGAGGCCGTTCAACTCGAACCACGACATATTATCAATTCAAATCCGGTTCAACCACAACCTCCGGAAAGCATTGGGGATTCACAAGTGTTTCCTGAACTTCCAAGTCTGGACGACCTTACGTCCTCAGACTGGTCGTTTCTTGAGAGTCTTTAG |
|
Protein Sequence
|
MPPSARSPSRSTQVPIKVQHRIGKKKAIRRKRIDLECGCSFYLHIDCALNGFAHRGTHHCASSAEFRLYLGADKSPLFQDSRPHREAVQLEPRHIINSNPVQPQPPESIGDSQVFPELPSLDDLTSSDWSFLESL |
|
NCBI Accession
|
NP_803408.1
|
|
Location
|
1559-2647 |
|
Gene Name
|
C1 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGGCACCTCCCAAGCGATTTCAAATAAATGCGAAGAATTACTTCCTCACTTATCCACAGTGCTCTCTCACGAAGGAGGAAGCACTTTCCCAATTACGAAGCTTACGCACGCCCACGAACCAGAAATACATCAAAGTTTGTCGTGAGTTACACGAGGATGGGCAACCTCATCTGCATGCCCTCATTCAGTTCGAGGGCAAATACAAGTGCCAAAATCAGCGATTCTTCGATCTGGTCTCCCCAACTCGATCAACACATTTCCATCCAAACGTTCAGGGAGCTAAGTCGTGTTCCGACGTCAAGTCCTACATCGAGAAGGACGGTGATAGCATCGAGTGGGGAGAGTTCCAGGTCGACGGACGTAGTGCTAGAGGCGGCTGCCATAAGGCTAATGACGCAGCCGCCGAGGCGTTAAACGCAGGTTCCGCTGAAGCTGCGTTGGCTATTATTAAGGAGAAACTCCCCAAAGATTATATATTTCAATATCATAATATCAAGGCTAATTTGGATAAGATCTTCCAAGCTCCTCCGGAGGTTTATGTTTCTCCCTTCTGTGCTTCCTCCTTCACTCAGGTTCCTGATGAACTTCAACGATGGGCATCGGCGAACGTGATGGATGCCGCTGCGCGGCCGTGGAGGCCGAGTAGTATAATAGTCGAGGGTGATAGTCGGACGGGCAAGACAATGTGGGCCCGTTCATTGGGACCACACAATTATTTGTGTGGACATCTCGACCTCAGTCCAAAAGTGTACAGCAATTCGGCTTGGTACAACGTCATTGATGACGTCGATCCGCATTATCTAAAGCACTTTAAAGAGTTCATGGGGGCCCAGCGTGACTGGCAAAGCAACACGAAGTACGGGAAGCCGATTCAAATTAAAGGCGGCATTCCGACAATCTTCCTGTGCAATCCAGGGCCGACGTCTTCATATAAAGAATACTTGGACGAAGATAAGAATATCTCTCTGAAAGCCTGGGCTCTAAAGAATGCCGCCTTCTGCACGCTCACCCAGCCGCTCTACTCAAGTGCCGATCAAAGTTCAACACCGAATCGGGAAGAAGAAAGCCATTCGGCGCAAAAGGATTGA |
|
Protein Sequence
|
MAPPKRFQINAKNYFLTYPQCSLTKEEALSQLRSLRTPTNQKYIKVCRELHEDGQPHLHALIQFEGKYKCQNQRFFDLVSPTRSTHFHPNVQGAKSCSDVKSYIEKDGDSIEWGEFQVDGRSARGGCHKANDAAAEALNAGSAEAALAIIKEKLPKDYIFQYHNIKANLDKIFQAPPEVYVSPFCASSFTQVPDELQRWASANVMDAAARPWRPSSIIVEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNISLKAWALKNAAFCTLTQPLYSSADQSSTPNREEESHSAQKD |
|
NCBI Accession
|
NP_803409.1
|
|
Location
|
2233-2490 |
|
Gene Name
|
C4 |
|
Protein Name
|
C4 protein |
|
Coding Region
|
ATGGGCAACCTCATCTGCATGCCCTCATTCAGTTCGAGGGCAAATACAAGTGCCAAAATCAGCGATTCTTCGATCTGGTCTCCCCAACTCGATCAACACATTTCCATCCAAACGTTCAGGGAGCTAAGTCGTGTTCCGACGTCAAGTCCTACATCGAGAAGGACGGTGATAGCATCGAGTGGGGAGAGTTCCAGGTCGACGGACGTAGTGCTAGAGGCGGCTGCCATAAGGCTAATGACGCAGCCGCCGAGGCGTTAA |
|
Protein Sequence
|
MGNLICMPSFSSRANTSAKISDSSIWSPQLDQHISIQTFRELSRVPTSSPTSRRTVIASSGESSRSTDVVLEAAAIRLMTQPPRR |