Spinach severe curly top virus
Basic Information
| Genus |
Curtovirus
|
| NCBI Assembly |
GCF_000888695.1 |
| Isolate |
USA |
| Release date |
2015/2/22 |
| Submitter |
Hernandez,C., Brown,J.K., Hernandez-Zepeda,C. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATGATGCCACTTGTCACTTTTCTATTTGTTCTAAAAAAGTAACCGTTACTTTTGACCAGTCAAAAGAAGAATTATGGACCCCACAACAATTCCTTGCTGGGCAAGGAATTGAAATTTCCCGCCAAAATTCAAAATTTAAATAAAGTAAACCCGACTCTGACATAAAGTTATCTTATTTTTTTACTATATGTATCCTATTTATACATTTACAAATAAATGTATAAATGATGGTCTGCCTTCCTGATTGGCTCTTCCTCCTTTTTATTTTTGCCATCCTTCTTCAATCAGGAACAAACTTTTATGGGACCATTCAAAGTGGATCAATTTCCAGGAAACTATCCAGCCTTTCTAGCCGTTTCGACGAGTTGTTTCTTAAGATACAACAAGTGGTGTATATTAGGAGTAATACCAGAGATCGGGGAGTTGACACTAGAAGAAGGAGAGGTCTTTCTTCAATTCCAGAAGGAAGTGAAGAAGTTGCTGAGGCTTAATTGCAGTTTCGGTAGAAAGTGCATTTTGTATCAGGATATTTATAAAAAGTACGTGAAGGATGAGTCAGAAAAGAAAAATGCAGTCGCAGGCTGCTGGGAAGAAGAAGAAGAAGACAGTATATGGGAAGAAATACCAATGGAAGAGGTCTGTTCGAAAGAACAGAAAGATCAAACTCAAGATGTATGATGACATGCTTGGAGCTGGTGGTGTTGGTTCTGCCATCACAAATGATGGTATGATTACTATGCTGAACAACTATGTTCAGGGCATTGGTGATTCTCAAAGATCATCCAATGTGACTGTTACAAGGCATTTGAAGTATGACATGGCATTAATGGGTAGCACAGGTTTTTGGGAGGCTCCTAATTATATGACTCAATATCATTGGATCATTGTTGACCGTGATGTTGGTTCTGTTTTTCCAGATAAGCTTAGTATGATTTTTGATATTCCCTCCAACGGCCAAGCCATGCCTTCTACTTATCGCATCCGGAGGGACATGAATGAGCGGTTCATTGTTAAAAAGAAATGGACCACTCATCTCATGTCTACAGGTACTGATTATGGTGGGAAGCAGACTTACAAGGCTCCATCTATGCCTAATTATAAGAAGCCTCTCAATGTCAATGTTAGGAATATCAATGTTAAGACGGTATGGAAGGACACTGGAGGTGGAAAGTATGAAGATGTGAAGGAAAATGCTATATTATATGTTGTTGTCAACGATAATACAGATAACACAAATATGTATGCCACTTTATATGGCAATTGTAGATGTTATTTTTATTGATAGAAAAAAATTTTTCCAATGAGATTGTAGTTTATTCTAGAAACATTTTTGAAATAAAATGTTTATTCTTGATATAATGACAATGGAGACCTGTAAGGGTCTGGTATTCCTTGCACACACTTCTCAATTAACTACTCAAAACCCCCCCTATTTTCACTTGGGTAACGAACGATTAAAAAAATTTGCCGAAAAAAGATTATACTTTATTAATGAACCGCGAACCTGGGAGCGGAAACCCTTTTTACATTGATTAAAATGCGAATTTAATTGGCCACTCATAGAAATCACACATATCTAGAATCATAATCCTCTCGGTCATGAACATCATATCTATTACACTACATATCTGACCTTTATCAATGTCAGATAATTTACACTTACGAAAAAAACGCCACACAAAACCTATTAAGTGACTGATAAGCTTCTGGGTTGGCTCCTGATGCTCTTCTGTCTGGAACTGGAACTTCCACTTGATGAAGGTACCTGTTGGTATCTCTGGTGTATACTTTGCACTGACCTGCATAGTTAAAGTATACTTGAAATCATTAGTTTTTTTCACTTCTATTTTCCAATCACAGAAATAGCACCTAAGCGATGGCTTGAATATTTCAGTCATCTTTGTTGTACAATGGTTCACTGATGGAAATGAATACGGCATTATATAATGTCCATCTTTTAAGGCTTTCATTTTCATCTTTATCCAAAAAATCTTTAAAGCTGGATCCCTCACCAGGATTACATAAAATAATTGAGGGTATTCCACCTTTAATCTGAACAGGCTTTCCATATTTGCAGTTGCTTTGCCAATCATGTTGGGCCCCAATAAGCTCTTTCCAATGCTTTAATTTTAAATAAGATGGTGCTATGTCATCAATGACATTATATTCCACTTCATTACTGTACACACGTGGATTGAAATCAAGATGCCCAGACAAGTAATTATGCTTACCTAACGATCTGGCCCAGCATGTTTTACCTGTTCTACTATCACCTTCAATTATTAAAGATTTTGGTCTAATGGGCCTTGATTCAATTGGCTGTCCAAAATAATTATCAGCCCATTCCTGCATTTCATCCGGAACGTTGTTGAATGATGATAATGGAAATGGAGGTGTCCATGTCTCTTGAGGTTTCTTGAATATTCTTTCAAGGTTGGCAAGGACATTGTGATGTTGTATCACAAATGTCTTTGGATCCCCAGCCTTGATTATCTCAAGAGCCTCTTTGACACCTCCTGAGTTAACTGCGTTGTGGTAGACGTCGTCTTTATTGGCTTTTGAACTGCCAGAGACCTTGTATTGTCCGGATTCACAATAATCACCTTCTTTGGTGATGTAATTGTGGACTGCATTGGCGTCCTTGGCTGCTTGGACATTAGGATGGTAATTGGCACTCCTCCTGGGGTGAGTAATGTCGAAAAATCTGCAGTCCTTGATGTTGGACTTTCCGGATAATTGTATGAGACAGTGGAGATGTGGTGTTCCATCTGCATGTCTCTCTGAGGCGACTCTAATGTATGTTGGTTTGACGACTGACCATGGAAGGTTTTGAAGCAATTGAAGTACTTCATCTTTTGGTATATCACACTGTGGATATGTGAGAAAGATATTTTTTGATGATAGTCTAAATGATTTATTTTGTCGAGGCATTTAAAATGGGACACCAGGGGTTTTTCTCTTCAAACTTGCATAATTGCTGGTGTCCTGGTGTCCCATTTATACCAAAACCTCCTTAGGACACCAGGCTTCGCGGCCATCCGATTTAATATT
Gene Information
|
NCBI Accession
|
YP_003966133.1
|
|
Location
|
239-505 |
|
Gene Name
|
V3 |
|
Protein Name
|
movement protein |
|
Coding Region
|
ATGATGGTCTGCCTTCCTGATTGGCTCTTCCTCCTTTTTATTTTTGCCATCCTTCTTCAATCAGGAACAAACTTTTATGGGACCATTCAAAGTGGATCAATTTCCAGGAAACTATCCAGCCTTTCTAGCCGTTTCGACGAGTTGTTTCTTAAGATACAACAAGTGGTGTATATTAGGAGTAATACCAGAGATCGGGGAGTTGACACTAGAAGAAGGAGAGGTCTTTCTTCAATTCCAGAAGGAAGTGAAGAAGTTGCTGAGGCTTAA |
|
Protein Sequence
|
MMVCLPDWLFLLFIFAILLQSGTNFYGTIQSGSISRKLSSLSSRFDELFLKIQQVVYIRSNTRDRGVDTRRRRGLSSIPEGSEEVAEA |
|
NCBI Accession
|
YP_003966134.1
|
|
Location
|
315-692 |
|
Gene Name
|
V2 |
|
Protein Name
|
ss-dsDNA regulator |
|
Coding Region
|
ATGGGACCATTCAAAGTGGATCAATTTCCAGGAAACTATCCAGCCTTTCTAGCCGTTTCGACGAGTTGTTTCTTAAGATACAACAAGTGGTGTATATTAGGAGTAATACCAGAGATCGGGGAGTTGACACTAGAAGAAGGAGAGGTCTTTCTTCAATTCCAGAAGGAAGTGAAGAAGTTGCTGAGGCTTAATTGCAGTTTCGGTAGAAAGTGCATTTTGTATCAGGATATTTATAAAAAGTACGTGAAGGATGAGTCAGAAAAGAAAAATGCAGTCGCAGGCTGCTGGGAAGAAGAAGAAGAAGACAGTATATGGGAAGAAATACCAATGGAAGAGGTCTGTTCGAAAGAACAGAAAGATCAAACTCAAGATGTATGA |
|
Protein Sequence
|
MGPFKVDQFPGNYPAFLAVSTSCFLRYNKWCILGVIPEIGELTLEEGEVFLQFQKEVKKLLRLNCSFGRKCILYQDIYKKYVKDESEKKNAVAGCWEEEEEDSIWEEIPMEEVCSKEQKDQTQDV |
|
NCBI Accession
|
YP_003966135.1
|
|
Location
|
565-1296 |
|
Gene Name
|
V1 |
|
Protein Name
|
capsid protein |
|
Coding Region
|
ATGAGTCAGAAAAGAAAAATGCAGTCGCAGGCTGCTGGGAAGAAGAAGAAGAAGACAGTATATGGGAAGAAATACCAATGGAAGAGGTCTGTTCGAAAGAACAGAAAGATCAAACTCAAGATGTATGATGACATGCTTGGAGCTGGTGGTGTTGGTTCTGCCATCACAAATGATGGTATGATTACTATGCTGAACAACTATGTTCAGGGCATTGGTGATTCTCAAAGATCATCCAATGTGACTGTTACAAGGCATTTGAAGTATGACATGGCATTAATGGGTAGCACAGGTTTTTGGGAGGCTCCTAATTATATGACTCAATATCATTGGATCATTGTTGACCGTGATGTTGGTTCTGTTTTTCCAGATAAGCTTAGTATGATTTTTGATATTCCCTCCAACGGCCAAGCCATGCCTTCTACTTATCGCATCCGGAGGGACATGAATGAGCGGTTCATTGTTAAAAAGAAATGGACCACTCATCTCATGTCTACAGGTACTGATTATGGTGGGAAGCAGACTTACAAGGCTCCATCTATGCCTAATTATAAGAAGCCTCTCAATGTCAATGTTAGGAATATCAATGTTAAGACGGTATGGAAGGACACTGGAGGTGGAAAGTATGAAGATGTGAAGGAAAATGCTATATTATATGTTGTTGTCAACGATAATACAGATAACACAAATATGTATGCCACTTTATATGGCAATTGTAGATGTTATTTTTATTGA |
|
Protein Sequence
|
MSQKRKMQSQAAGKKKKKTVYGKKYQWKRSVRKNRKIKLKMYDDMLGAGGVGSAITNDGMITMLNNYVQGIGDSQRSSNVTVTRHLKYDMALMGSTGFWEAPNYMTQYHWIIVDRDVGSVFPDKLSMIFDIPSNGQAMPSTYRIRRDMNERFIVKKKWTTHLMSTGTDYGGKQTYKAPSMPNYKKPLNVNVRNINVKTVWKDTGGGKYEDVKENAILYVVVNDNTDNTNMYATLYGNCRCYFY |
|
NCBI Accession
|
YP_003966136.1
|
|
Location
|
1547-1954 |
|
Gene Name
|
C2 |
|
Protein Name
|
C2 protein |
|
Coding Region
|
ATGCCGTATTCATTTCCATCAGTGAACCATTGTACAACAAAGATGACTGAAATATTCAAGCCATCGCTTAGGTGCTATTTCTGTGATTGGAAAATAGAAGTGAAAAAAACTAATGATTTCAAGTATACTTTAACTATGCAGGTCAGTGCAAAGTATACACCAGAGATACCAACAGGTACCTTCATCAAGTGGAAGTTCCAGTTCCAGACAGAAGAGCATCAGGAGCCAACCCAGAAGCTTATCAGTCACTTAATAGGTTTTGTGTGGCGTTTTTTTCGTAAGTGTAAATTATCTGACATTGATAAAGGTCAGATATGTAGTGTAATAGATATGATGTTCATGACCGAGAGGATTATGATTCTAGATATGTGTGATTTCTATGAGTGGCCAATTAAATTCGCATTTTAA |
|
Protein Sequence
|
MPYSFPSVNHCTTKMTEIFKPSLRCYFCDWKIEVKKTNDFKYTLTMQVSAKYTPEIPTGTFIKWKFQFQTEEHQEPTQKLISHLIGFVWRFFRKCKLSDIDKGQICSVIDMMFMTERIMILDMCDFYEWPIKFAF |
|
NCBI Accession
|
YP_003966137.1
|
|
Location
|
1905-2945 |
|
Gene Name
|
C1 |
|
Protein Name
|
replication initiator protein |
|
Coding Region
|
ATGCCTCGACAAAATAAATCATTTAGACTATCATCAAAAAATATCTTTCTCACATATCCACAGTGTGATATACCAAAAGATGAAGTACTTCAATTGCTTCAAAACCTTCCATGGTCAGTCGTCAAACCAACATACATTAGAGTCGCCTCAGAGAGACATGCAGATGGAACACCACATCTCCACTGTCTCATACAATTATCCGGAAAGTCCAACATCAAGGACTGCAGATTTTTCGACATTACTCACCCCAGGAGGAGTGCCAATTACCATCCTAATGTCCAAGCAGCCAAGGACGCCAATGCAGTCCACAATTACATCACCAAAGAAGGTGATTATTGTGAATCCGGACAATACAAGGTCTCTGGCAGTTCAAAAGCCAATAAAGACGACGTCTACCACAACGCAGTTAACTCAGGAGGTGTCAAAGAGGCTCTTGAGATAATCAAGGCTGGGGATCCAAAGACATTTGTGATACAACATCACAATGTCCTTGCCAACCTTGAAAGAATATTCAAGAAACCTCAAGAGACATGGACACCTCCATTTCCATTATCATCATTCAACAACGTTCCGGATGAAATGCAGGAATGGGCTGATAATTATTTTGGACAGCCAATTGAATCAAGGCCCATTAGACCAAAATCTTTAATAATTGAAGGTGATAGTAGAACAGGTAAAACATGCTGGGCCAGATCGTTAGGTAAGCATAATTACTTGTCTGGGCATCTTGATTTCAATCCACGTGTGTACAGTAATGAAGTGGAATATAATGTCATTGATGACATAGCACCATCTTATTTAAAATTAAAGCATTGGAAAGAGCTTATTGGGGCCCAACATGATTGGCAAAGCAACTGCAAATATGGAAAGCCTGTTCAGATTAAAGGTGGAATACCCTCAATTATTTTATGTAATCCTGGTGAGGGATCCAGCTTTAAAGATTTTTTGGATAAAGATGAAAATGAAAGCCTTAAAAGATGGACATTATATAATGCCGTATTCATTTCCATCAGTGAACCATTGTACAACAAAGATGACTGA |
|
Protein Sequence
|
MPRQNKSFRLSSKNIFLTYPQCDIPKDEVLQLLQNLPWSVVKPTYIRVASERHADGTPHLHCLIQLSGKSNIKDCRFFDITHPRRSANYHPNVQAAKDANAVHNYITKEGDYCESGQYKVSGSSKANKDDVYHNAVNSGGVKEALEIIKAGDPKTFVIQHHNVLANLERIFKKPQETWTPPFPLSSFNNVPDEMQEWADNYFGQPIESRPIRPKSLIIEGDSRTGKTCWARSLGKHNYLSGHLDFNPRVYSNEVEYNVIDDIAPSYLKLKHWKELIGAQHDWQSNCKYGKPVQIKGGIPSIILCNPGEGSSFKDFLDKDENESLKRWTLYNAVFISISEPLYNKDD |
|
NCBI Accession
|
YP_003966138.1
|
|
Location
|
2504-2866 |
|
Gene Name
|
C4 |
|
Protein Name
|
cell cycle regulator |
|
Coding Region
|
ATGAAGTACTTCAATTGCTTCAAAACCTTCCATGGTCAGTCGTCAAACCAACATACATTAGAGTCGCCTCAGAGAGACATGCAGATGGAACACCACATCTCCACTGTCTCATACAATTATCCGGAAAGTCCAACATCAAGGACTGCAGATTTTTCGACATTACTCACCCCAGGAGGAGTGCCAATTACCATCCTAATGTCCAAGCAGCCAAGGACGCCAATGCAGTCCACAATTACATCACCAAAGAAGGTGATTATTGTGAATCCGGACAATACAAGGTCTCTGGCAGTTCAAAAGCCAATAAAGACGACGTCTACCACAACGCAGTTAACTCAGGAGGTGTCAAAGAGGCTCTTGAGATAA |
|
Protein Sequence
|
MKYFNCFKTFHGQSSNQHTLESPQRDMQMEHHISTVSYNYPESPTSRTADFSTLLTPGGVPITILMSKQPRTPMQSTITSPKKVIIVNPDNTRSLAVQKPIKTTSTTTQLTQEVSKRLLR |