Spinach severe curly top virus

Basic Information

Genus Curtovirus
NCBI Assembly GCF_000888695.1
Isolate USA
Release date 2015/2/22
Submitter Hernandez,C., Brown,J.K., Hernandez-Zepeda,C.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_014631
ACCGGATGGCCGCGATGATGCCACTTGTCACTTTTCTATTTGTTCTAAAAAAGTAACCGTTACTTTTGACCAGTCAAAAGAAGAATTATGGACCCCACAACAATTCCTTGCTGGGCAAGGAATTGAAATTTCCCGCCAAAATTCAAAATTTAAATAAAGTAAACCCGACTCTGACATAAAGTTATCTTATTTTTTTACTATATGTATCCTATTTATACATTTACAAATAAATGTATAAATGATGGTCTGCCTTCCTGATTGGCTCTTCCTCCTTTTTATTTTTGCCATCCTTCTTCAATCAGGAACAAACTTTTATGGGACCATTCAAAGTGGATCAATTTCCAGGAAACTATCCAGCCTTTCTAGCCGTTTCGACGAGTTGTTTCTTAAGATACAACAAGTGGTGTATATTAGGAGTAATACCAGAGATCGGGGAGTTGACACTAGAAGAAGGAGAGGTCTTTCTTCAATTCCAGAAGGAAGTGAAGAAGTTGCTGAGGCTTAATTGCAGTTTCGGTAGAAAGTGCATTTTGTATCAGGATATTTATAAAAAGTACGTGAAGGATGAGTCAGAAAAGAAAAATGCAGTCGCAGGCTGCTGGGAAGAAGAAGAAGAAGACAGTATATGGGAAGAAATACCAATGGAAGAGGTCTGTTCGAAAGAACAGAAAGATCAAACTCAAGATGTATGATGACATGCTTGGAGCTGGTGGTGTTGGTTCTGCCATCACAAATGATGGTATGATTACTATGCTGAACAACTATGTTCAGGGCATTGGTGATTCTCAAAGATCATCCAATGTGACTGTTACAAGGCATTTGAAGTATGACATGGCATTAATGGGTAGCACAGGTTTTTGGGAGGCTCCTAATTATATGACTCAATATCATTGGATCATTGTTGACCGTGATGTTGGTTCTGTTTTTCCAGATAAGCTTAGTATGATTTTTGATATTCCCTCCAACGGCCAAGCCATGCCTTCTACTTATCGCATCCGGAGGGACATGAATGAGCGGTTCATTGTTAAAAAGAAATGGACCACTCATCTCATGTCTACAGGTACTGATTATGGTGGGAAGCAGACTTACAAGGCTCCATCTATGCCTAATTATAAGAAGCCTCTCAATGTCAATGTTAGGAATATCAATGTTAAGACGGTATGGAAGGACACTGGAGGTGGAAAGTATGAAGATGTGAAGGAAAATGCTATATTATATGTTGTTGTCAACGATAATACAGATAACACAAATATGTATGCCACTTTATATGGCAATTGTAGATGTTATTTTTATTGATAGAAAAAAATTTTTCCAATGAGATTGTAGTTTATTCTAGAAACATTTTTGAAATAAAATGTTTATTCTTGATATAATGACAATGGAGACCTGTAAGGGTCTGGTATTCCTTGCACACACTTCTCAATTAACTACTCAAAACCCCCCCTATTTTCACTTGGGTAACGAACGATTAAAAAAATTTGCCGAAAAAAGATTATACTTTATTAATGAACCGCGAACCTGGGAGCGGAAACCCTTTTTACATTGATTAAAATGCGAATTTAATTGGCCACTCATAGAAATCACACATATCTAGAATCATAATCCTCTCGGTCATGAACATCATATCTATTACACTACATATCTGACCTTTATCAATGTCAGATAATTTACACTTACGAAAAAAACGCCACACAAAACCTATTAAGTGACTGATAAGCTTCTGGGTTGGCTCCTGATGCTCTTCTGTCTGGAACTGGAACTTCCACTTGATGAAGGTACCTGTTGGTATCTCTGGTGTATACTTTGCACTGACCTGCATAGTTAAAGTATACTTGAAATCATTAGTTTTTTTCACTTCTATTTTCCAATCACAGAAATAGCACCTAAGCGATGGCTTGAATATTTCAGTCATCTTTGTTGTACAATGGTTCACTGATGGAAATGAATACGGCATTATATAATGTCCATCTTTTAAGGCTTTCATTTTCATCTTTATCCAAAAAATCTTTAAAGCTGGATCCCTCACCAGGATTACATAAAATAATTGAGGGTATTCCACCTTTAATCTGAACAGGCTTTCCATATTTGCAGTTGCTTTGCCAATCATGTTGGGCCCCAATAAGCTCTTTCCAATGCTTTAATTTTAAATAAGATGGTGCTATGTCATCAATGACATTATATTCCACTTCATTACTGTACACACGTGGATTGAAATCAAGATGCCCAGACAAGTAATTATGCTTACCTAACGATCTGGCCCAGCATGTTTTACCTGTTCTACTATCACCTTCAATTATTAAAGATTTTGGTCTAATGGGCCTTGATTCAATTGGCTGTCCAAAATAATTATCAGCCCATTCCTGCATTTCATCCGGAACGTTGTTGAATGATGATAATGGAAATGGAGGTGTCCATGTCTCTTGAGGTTTCTTGAATATTCTTTCAAGGTTGGCAAGGACATTGTGATGTTGTATCACAAATGTCTTTGGATCCCCAGCCTTGATTATCTCAAGAGCCTCTTTGACACCTCCTGAGTTAACTGCGTTGTGGTAGACGTCGTCTTTATTGGCTTTTGAACTGCCAGAGACCTTGTATTGTCCGGATTCACAATAATCACCTTCTTTGGTGATGTAATTGTGGACTGCATTGGCGTCCTTGGCTGCTTGGACATTAGGATGGTAATTGGCACTCCTCCTGGGGTGAGTAATGTCGAAAAATCTGCAGTCCTTGATGTTGGACTTTCCGGATAATTGTATGAGACAGTGGAGATGTGGTGTTCCATCTGCATGTCTCTCTGAGGCGACTCTAATGTATGTTGGTTTGACGACTGACCATGGAAGGTTTTGAAGCAATTGAAGTACTTCATCTTTTGGTATATCACACTGTGGATATGTGAGAAAGATATTTTTTGATGATAGTCTAAATGATTTATTTTGTCGAGGCATTTAAAATGGGACACCAGGGGTTTTTCTCTTCAAACTTGCATAATTGCTGGTGTCCTGGTGTCCCATTTATACCAAAACCTCCTTAGGACACCAGGCTTCGCGGCCATCCGATTTAATATT

Gene Information

NCBI Accession YP_003966133.1
Location 239-505
Gene Name V3
Protein Name movement protein
Coding Region ATGATGGTCTGCCTTCCTGATTGGCTCTTCCTCCTTTTTATTTTTGCCATCCTTCTTCAATCAGGAACAAACTTTTATGGGACCATTCAAAGTGGATCAATTTCCAGGAAACTATCCAGCCTTTCTAGCCGTTTCGACGAGTTGTTTCTTAAGATACAACAAGTGGTGTATATTAGGAGTAATACCAGAGATCGGGGAGTTGACACTAGAAGAAGGAGAGGTCTTTCTTCAATTCCAGAAGGAAGTGAAGAAGTTGCTGAGGCTTAA
Protein Sequence MMVCLPDWLFLLFIFAILLQSGTNFYGTIQSGSISRKLSSLSSRFDELFLKIQQVVYIRSNTRDRGVDTRRRRGLSSIPEGSEEVAEA

NCBI Accession YP_003966134.1
Location 315-692
Gene Name V2
Protein Name ss-dsDNA regulator
Coding Region ATGGGACCATTCAAAGTGGATCAATTTCCAGGAAACTATCCAGCCTTTCTAGCCGTTTCGACGAGTTGTTTCTTAAGATACAACAAGTGGTGTATATTAGGAGTAATACCAGAGATCGGGGAGTTGACACTAGAAGAAGGAGAGGTCTTTCTTCAATTCCAGAAGGAAGTGAAGAAGTTGCTGAGGCTTAATTGCAGTTTCGGTAGAAAGTGCATTTTGTATCAGGATATTTATAAAAAGTACGTGAAGGATGAGTCAGAAAAGAAAAATGCAGTCGCAGGCTGCTGGGAAGAAGAAGAAGAAGACAGTATATGGGAAGAAATACCAATGGAAGAGGTCTGTTCGAAAGAACAGAAAGATCAAACTCAAGATGTATGA
Protein Sequence MGPFKVDQFPGNYPAFLAVSTSCFLRYNKWCILGVIPEIGELTLEEGEVFLQFQKEVKKLLRLNCSFGRKCILYQDIYKKYVKDESEKKNAVAGCWEEEEEDSIWEEIPMEEVCSKEQKDQTQDV

NCBI Accession YP_003966135.1
Location 565-1296
Gene Name V1
Protein Name capsid protein
Coding Region ATGAGTCAGAAAAGAAAAATGCAGTCGCAGGCTGCTGGGAAGAAGAAGAAGAAGACAGTATATGGGAAGAAATACCAATGGAAGAGGTCTGTTCGAAAGAACAGAAAGATCAAACTCAAGATGTATGATGACATGCTTGGAGCTGGTGGTGTTGGTTCTGCCATCACAAATGATGGTATGATTACTATGCTGAACAACTATGTTCAGGGCATTGGTGATTCTCAAAGATCATCCAATGTGACTGTTACAAGGCATTTGAAGTATGACATGGCATTAATGGGTAGCACAGGTTTTTGGGAGGCTCCTAATTATATGACTCAATATCATTGGATCATTGTTGACCGTGATGTTGGTTCTGTTTTTCCAGATAAGCTTAGTATGATTTTTGATATTCCCTCCAACGGCCAAGCCATGCCTTCTACTTATCGCATCCGGAGGGACATGAATGAGCGGTTCATTGTTAAAAAGAAATGGACCACTCATCTCATGTCTACAGGTACTGATTATGGTGGGAAGCAGACTTACAAGGCTCCATCTATGCCTAATTATAAGAAGCCTCTCAATGTCAATGTTAGGAATATCAATGTTAAGACGGTATGGAAGGACACTGGAGGTGGAAAGTATGAAGATGTGAAGGAAAATGCTATATTATATGTTGTTGTCAACGATAATACAGATAACACAAATATGTATGCCACTTTATATGGCAATTGTAGATGTTATTTTTATTGA
Protein Sequence MSQKRKMQSQAAGKKKKKTVYGKKYQWKRSVRKNRKIKLKMYDDMLGAGGVGSAITNDGMITMLNNYVQGIGDSQRSSNVTVTRHLKYDMALMGSTGFWEAPNYMTQYHWIIVDRDVGSVFPDKLSMIFDIPSNGQAMPSTYRIRRDMNERFIVKKKWTTHLMSTGTDYGGKQTYKAPSMPNYKKPLNVNVRNINVKTVWKDTGGGKYEDVKENAILYVVVNDNTDNTNMYATLYGNCRCYFY

NCBI Accession YP_003966136.1
Location 1547-1954
Gene Name C2
Protein Name C2 protein
Coding Region ATGCCGTATTCATTTCCATCAGTGAACCATTGTACAACAAAGATGACTGAAATATTCAAGCCATCGCTTAGGTGCTATTTCTGTGATTGGAAAATAGAAGTGAAAAAAACTAATGATTTCAAGTATACTTTAACTATGCAGGTCAGTGCAAAGTATACACCAGAGATACCAACAGGTACCTTCATCAAGTGGAAGTTCCAGTTCCAGACAGAAGAGCATCAGGAGCCAACCCAGAAGCTTATCAGTCACTTAATAGGTTTTGTGTGGCGTTTTTTTCGTAAGTGTAAATTATCTGACATTGATAAAGGTCAGATATGTAGTGTAATAGATATGATGTTCATGACCGAGAGGATTATGATTCTAGATATGTGTGATTTCTATGAGTGGCCAATTAAATTCGCATTTTAA
Protein Sequence MPYSFPSVNHCTTKMTEIFKPSLRCYFCDWKIEVKKTNDFKYTLTMQVSAKYTPEIPTGTFIKWKFQFQTEEHQEPTQKLISHLIGFVWRFFRKCKLSDIDKGQICSVIDMMFMTERIMILDMCDFYEWPIKFAF

NCBI Accession YP_003966137.1
Location 1905-2945
Gene Name C1
Protein Name replication initiator protein
Coding Region ATGCCTCGACAAAATAAATCATTTAGACTATCATCAAAAAATATCTTTCTCACATATCCACAGTGTGATATACCAAAAGATGAAGTACTTCAATTGCTTCAAAACCTTCCATGGTCAGTCGTCAAACCAACATACATTAGAGTCGCCTCAGAGAGACATGCAGATGGAACACCACATCTCCACTGTCTCATACAATTATCCGGAAAGTCCAACATCAAGGACTGCAGATTTTTCGACATTACTCACCCCAGGAGGAGTGCCAATTACCATCCTAATGTCCAAGCAGCCAAGGACGCCAATGCAGTCCACAATTACATCACCAAAGAAGGTGATTATTGTGAATCCGGACAATACAAGGTCTCTGGCAGTTCAAAAGCCAATAAAGACGACGTCTACCACAACGCAGTTAACTCAGGAGGTGTCAAAGAGGCTCTTGAGATAATCAAGGCTGGGGATCCAAAGACATTTGTGATACAACATCACAATGTCCTTGCCAACCTTGAAAGAATATTCAAGAAACCTCAAGAGACATGGACACCTCCATTTCCATTATCATCATTCAACAACGTTCCGGATGAAATGCAGGAATGGGCTGATAATTATTTTGGACAGCCAATTGAATCAAGGCCCATTAGACCAAAATCTTTAATAATTGAAGGTGATAGTAGAACAGGTAAAACATGCTGGGCCAGATCGTTAGGTAAGCATAATTACTTGTCTGGGCATCTTGATTTCAATCCACGTGTGTACAGTAATGAAGTGGAATATAATGTCATTGATGACATAGCACCATCTTATTTAAAATTAAAGCATTGGAAAGAGCTTATTGGGGCCCAACATGATTGGCAAAGCAACTGCAAATATGGAAAGCCTGTTCAGATTAAAGGTGGAATACCCTCAATTATTTTATGTAATCCTGGTGAGGGATCCAGCTTTAAAGATTTTTTGGATAAAGATGAAAATGAAAGCCTTAAAAGATGGACATTATATAATGCCGTATTCATTTCCATCAGTGAACCATTGTACAACAAAGATGACTGA
Protein Sequence MPRQNKSFRLSSKNIFLTYPQCDIPKDEVLQLLQNLPWSVVKPTYIRVASERHADGTPHLHCLIQLSGKSNIKDCRFFDITHPRRSANYHPNVQAAKDANAVHNYITKEGDYCESGQYKVSGSSKANKDDVYHNAVNSGGVKEALEIIKAGDPKTFVIQHHNVLANLERIFKKPQETWTPPFPLSSFNNVPDEMQEWADNYFGQPIESRPIRPKSLIIEGDSRTGKTCWARSLGKHNYLSGHLDFNPRVYSNEVEYNVIDDIAPSYLKLKHWKELIGAQHDWQSNCKYGKPVQIKGGIPSIILCNPGEGSSFKDFLDKDENESLKRWTLYNAVFISISEPLYNKDD

NCBI Accession YP_003966138.1
Location 2504-2866
Gene Name C4
Protein Name cell cycle regulator
Coding Region ATGAAGTACTTCAATTGCTTCAAAACCTTCCATGGTCAGTCGTCAAACCAACATACATTAGAGTCGCCTCAGAGAGACATGCAGATGGAACACCACATCTCCACTGTCTCATACAATTATCCGGAAAGTCCAACATCAAGGACTGCAGATTTTTCGACATTACTCACCCCAGGAGGAGTGCCAATTACCATCCTAATGTCCAAGCAGCCAAGGACGCCAATGCAGTCCACAATTACATCACCAAAGAAGGTGATTATTGTGAATCCGGACAATACAAGGTCTCTGGCAGTTCAAAAGCCAATAAAGACGACGTCTACCACAACGCAGTTAACTCAGGAGGTGTCAAAGAGGCTCTTGAGATAA
Protein Sequence MKYFNCFKTFHGQSSNQHTLESPQRDMQMEHHISTVSYNYPESPTSRTADFSTLLTPGGVPITILMSKQPRTPMQSTITSPKKVIIVNPDNTRSLAVQKPIKTTSTTTQLTQEVSKRLLR

References More References in PubMed

1

First Report of a New Curtovirus Species, Spinach severe curly top virus, in Commercial Spinach Plants (Spinacia oleracea) from South-Central Arizona.

Hernandez C, et al.  Plant Dis. 2010 Jul;94(7):917. doi: 10.1094/PDIS-94-7-0917B.

PMID: 30743586
2

Spinach curly top virus: A Newly Described Curtovirus Species from Southwest Texas with Incongruent Gene Phylogenies.

Baliji S, et al.  Phytopathology. 2004 Jul;94(7):772-9. doi: 10.1094/PHYTO.2004.94.7.772.

PMID: 18943911
3

Transcriptional analysis of complementary sense genes in Spinach curly top virus and functional role of C2 in pathogenesis.

Baliji S, et al.  Mol Plant Microbe Interact. 2007 Feb;20(2):194-206. doi: 10.1094/MPMI-20-2-0194.

PMID: 17313170
4

Revisiting the classification of curtoviruses based on genome-wide pairwise identity.

Varsani A, et al.  Arch Virol. 2014 Jul;159(7):1873-82. doi: 10.1007/s00705-014-1982-x. Epub 2014 Jan 25.

PMID: 24463952
5

Intergeneric recombination between a new, spinach-infecting curtovirus and a new geminivirus belonging to the genus Becurtovirus: first New World exemplar.

Hernández-Zepeda C, et al.  Arch Virol. 2013 Nov;158(11):2245-54. doi: 10.1007/s00705-013-1733-4. Epub 2013 May 26.

PMID: 23708296