Horseradish curly top virus

Basic Information

Genus Curtovirus
NCBI Assembly GCF_000837985.1
Release date 2015/2/12
Submitter Klute,K.A., Nadler,S.A., Stenger,D.C.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_002543
ACCGGATGGCCGCGATGCTACCACGTGTCTTAAAATTGTTGGCTGGTCAAAAGTGGCGGCGACCGGTTTTATAAAGTAAAGTAAAGTAGACCCCACTAGGAAACTTGGTCGGCAAGTTTAACTTTATCCTTTTAAATAAATACGGTATTTGTACATATATTTATATATGTACAAATGATGGTATGTCTACCAGACTGGGTATTCCTACTATTCATAGCTAGTATTCTTCTACAGGCTTGTACGAATTTTTATGGGACCTTTCACAGTGGGTCAATTTCCAAGAAATTATCCAGCCTTGTTAGCCGTTTCGACGAGTTGTTTTTTCAGATACAACAAGTGGTGTATACTAGGTATCCGTCACGAAGTCGAATCGTTAACCCTAGAAGAAGGGGAAGCCTTTCTGGGATTCCAGAAGGAGGTGAAGAAACTGTTGAAGCGTAAGTGTACTTTTTCTAGAAAGTGTGAGTTGTATGAGGAGATATACAAGAAATACTTATCAGATGGGCCAGAAGAGAAAGGCTCCCTACCAACCGTCATGGTCGAAGAAGAGGAAGACTGGGCCCATGAGAAAATACCAATGGAAGAGGCCTGCTCGCAAGACGAAGGCCCTGAAATTGAAGATGTATGATGATATGCTTGGTGCTGGTGGATTGGGTTCTACCATTAGCAATAATGGTATGATTACTATGTTGAATAATTATGTCCAGGGTATTGGAGATAGTCAACGGTCTACTAACACGACTATTACGAAGCATATGAAGTTTGATATGGCGCTAATGGGCAGTTCTAGTTTTTGGGATACTCCAAATTACATGACTCAATATCATTGGATTATCATAGACAAGGATGTTGGTTCGGTGTTTCCTGTTAAGTTGGATGATATATTTGATATTCCATCAAATGGTCAAGCTATGCCTTCTACTTTCCGCATTAGGAGAGATAGTAATGAGAGGTTTATTGTGAAGAGGAAGTGGACTACACATTTAATGTCTACTGGAGCAGCTTATGGTAGCAAGGATATTTACAAGGGTCCTTCTATGCCTAATTACAAGAAGGGTATGAACATCAATATTCGCAACTTGAATGTGAAGACTATATGGAAGGATACTGGTGGCGGGAAATACGAAGATGTTAAGGAGAATGCTATACTTTATATTGTTGTTAATGATAATGCCGATAATACTAATATGTATGCTACATTATTTGGCAATTGCCGATGTTATTTTTATTAATAAAATAAGTAATGTATTTTAAAGAATGTGCTTGGGTTCCTACTTTTGCCCTGCCATGTCCCCTTATCCTTAGGGTTTAGTTTTGAAGCAGAGCGAGCGCAGCGAGCGTAAACAACCCGAATAAACGGACTAGGCTTTGATCTATAAATGCAGGGCTTTAGCCCTGCATTTCTAGACAAAGGCGTCAATAGACTGTTAACTAACAGTTATAGTATCAAACGCAATGAACCCGAAGGGTTCACAAAAAAAAAGCAAGCGTAACTGTCAAGTAGCGCGCAGAAGGGGGAAAAATCAAGATACACACAAAAAGGAAGACAATATATTATTAAACTGCGCTTCTTTATTAAAATAGAACTTTAAGAGTAGTACAATATGAGTCGACGATTTCTAAGATGTTTACATCGTATGTAAGTAGAGCAAGATTGAAAGAAGATCCTATTTGTTCTATGTCCAGATGAGTTATATCGTCTACTCTGAACAAGATACGTACAATCCTTATCCATTCATCGATTACCAAACCAAAAGATTGGTCTGAACGATCAAGAAGAAAAGAAAAATAGTAAGTCATAAATGATCCAGGTGGTACTGTCCTCCCTCGGCCTTCGATAACCTTGATTTTCAAAGTGTAAAGATCCGGCTGCTTCTTTGTTGCTTCGATCTCCCATATTGTGCGCCTGAGATTTTTTATTGAATATTTAATGGATTCCATTGTCGAATAATGGAGTATCCAGGAATATAAAAATGGCATTATATAATGTCCATTGTCTCAAGCCGTCATTTTCAGGCTTGTCTAAAAAATCTCGAAAGCTAGATCCCTCACCAGGATTACAAAGTATAATGGTGGGGACCCCTCCTCTAATTTGAACCGGTTTCCCGTATTTGCAATTGCTTTGCCAGTCCCTTTGGGCCCCGATGAGCTCTTTCCAATGCTTCATCTTCAAGTATGTCGGGGCTACGTCATCTATGACGTTATATTCCACTTCGTTGGAATACACGCGCATGTTGAAGTCGAGGTGTCCACACAAGTAGTTGTGTGTACCTAACGCTCTTGCCCAGCACGTTTTTCCCGTTCTACTGTTCCCTTCTATGATAATGGATTTGGCCTTATGGCTGTCGGCAACAGGCCTGCCAAAGTAATCATCGGCCCACTCTTGCATTTCTTCGGGGACGTTTGTGAAGGAGGAGAGAGGATACGGCGGATTCCAGGGTTCTGGTGGTTTCGCGAATATGTGTTCAAGGTTGGCTTTTACATTGTGATGTTGAGTCACGAATGTCTTTGGATCCCCAGCCTTTATGATGTCAAGAGCCTCTCGTACACCTCCTGCATTGACGGCGTTGTGGTAGACGGCGTCCTTGTTTGCTTTTGTTCCCCCAGAGACCTTGTATTGTCCGGATTCACAATAATCACCTTCTTTGGTGATGTAATTCTTGACGGCATTGGTGTCTTTGGCTGATTGGACATTAGGATGGAAAGAGGTACTCCGTTGGGGGTGAGTAATGTCGAAAAATCTGCAGTCCTTGATGTTGGACTTTCCTGAAAGTTGTATAAGGCAGTGGAGGTGCGGTGTTCCGTCGGCGTGTCTCTCGGCGGCGACTCTGATATATGTTGGTTTGACGACTGTCCAGTTGAGGTTTTGAAGCAGTTGAAGCATTTCATCTTTTGGTATTGTACACTGAGGATAAGTGAGAAAAATATTTCTTGCTTGAATACGGAAAGAATTAGGCTGTCTTGGCATTTTGAACTGGGACTCCAGGTTTTAGGTTTAATCCTGTCATATTCGTGGAGTTCTGGAGTCTCATTTATACTAAAACCTCTTAAGGCCAATAGCGGCCATCCGTTCTAATATT

Gene Information

NCBI Accession NP_066181.1
Location 175-441
Gene Name V3
Protein Name movement protein
Coding Region ATGATGGTATGTCTACCAGACTGGGTATTCCTACTATTCATAGCTAGTATTCTTCTACAGGCTTGTACGAATTTTTATGGGACCTTTCACAGTGGGTCAATTTCCAAGAAATTATCCAGCCTTGTTAGCCGTTTCGACGAGTTGTTTTTTCAGATACAACAAGTGGTGTATACTAGGTATCCGTCACGAAGTCGAATCGTTAACCCTAGAAGAAGGGGAAGCCTTTCTGGGATTCCAGAAGGAGGTGAAGAAACTGTTGAAGCGTAA
Protein Sequence MMVCLPDWVFLLFIASILLQACTNFYGTFHSGSISKKLSSLVSRFDELFFQIQQVVYTRYPSRSRIVNPRRRGSLSGIPEGGEETVEA

NCBI Accession NP_066182.1
Location 251-628
Gene Name V2
Protein Name hypothetical protein
Coding Region ATGGGACCTTTCACAGTGGGTCAATTTCCAAGAAATTATCCAGCCTTGTTAGCCGTTTCGACGAGTTGTTTTTTCAGATACAACAAGTGGTGTATACTAGGTATCCGTCACGAAGTCGAATCGTTAACCCTAGAAGAAGGGGAAGCCTTTCTGGGATTCCAGAAGGAGGTGAAGAAACTGTTGAAGCGTAAGTGTACTTTTTCTAGAAAGTGTGAGTTGTATGAGGAGATATACAAGAAATACTTATCAGATGGGCCAGAAGAGAAAGGCTCCCTACCAACCGTCATGGTCGAAGAAGAGGAAGACTGGGCCCATGAGAAAATACCAATGGAAGAGGCCTGCTCGCAAGACGAAGGCCCTGAAATTGAAGATGTATGA
Protein Sequence MGPFTVGQFPRNYPALLAVSTSCFFRYNKWCILGIRHEVESLTLEEGEAFLGFQKEVKKLLKRKCTFSRKCELYEEIYKKYLSDGPEEKGSLPTVMVEEEEDWAHEKIPMEEACSQDEGPEIEDV

NCBI Accession NP_066183.1
Location 471-1232
Gene Name V1
Protein Name capsid protein
Coding Region ATGAGGAGATATACAAGAAATACTTATCAGATGGGCCAGAAGAGAAAGGCTCCCTACCAACCGTCATGGTCGAAGAAGAGGAAGACTGGGCCCATGAGAAAATACCAATGGAAGAGGCCTGCTCGCAAGACGAAGGCCCTGAAATTGAAGATGTATGATGATATGCTTGGTGCTGGTGGATTGGGTTCTACCATTAGCAATAATGGTATGATTACTATGTTGAATAATTATGTCCAGGGTATTGGAGATAGTCAACGGTCTACTAACACGACTATTACGAAGCATATGAAGTTTGATATGGCGCTAATGGGCAGTTCTAGTTTTTGGGATACTCCAAATTACATGACTCAATATCATTGGATTATCATAGACAAGGATGTTGGTTCGGTGTTTCCTGTTAAGTTGGATGATATATTTGATATTCCATCAAATGGTCAAGCTATGCCTTCTACTTTCCGCATTAGGAGAGATAGTAATGAGAGGTTTATTGTGAAGAGGAAGTGGACTACACATTTAATGTCTACTGGAGCAGCTTATGGTAGCAAGGATATTTACAAGGGTCCTTCTATGCCTAATTACAAGAAGGGTATGAACATCAATATTCGCAACTTGAATGTGAAGACTATATGGAAGGATACTGGTGGCGGGAAATACGAAGATGTTAAGGAGAATGCTATACTTTATATTGTTGTTAATGATAATGCCGATAATACTAATATGTATGCTACATTATTTGGCAATTGCCGATGTTATTTTTATTAA
Protein Sequence MRRYTRNTYQMGQKRKAPYQPSWSKKRKTGPMRKYQWKRPARKTKALKLKMYDDMLGAGGLGSTISNNGMITMLNNYVQGIGDSQRSTNTTITKHMKFDMALMGSSSFWDTPNYMTQYHWIIIDKDVGSVFPVKLDDIFDIPSNGQAMPSTFRIRRDSNERFIVKRKWTTHLMSTGAAYGSKDIYKGPSMPNYKKGMNINIRNLNVKTIWKDTGGGKYEDVKENAILYIVVNDNADNTNMYATLFGNCRCYFY

NCBI Accession NP_066184.1
Location 1576-1980
Gene Name C2
Protein Name hypothetical protein
Coding Region ATGCCATTTTTATATTCCTGGATACTCCATTATTCGACAATGGAATCCATTAAATATTCAATAAAAAATCTCAGGCGCACAATATGGGAGATCGAAGCAACAAAGAAGCAGCCGGATCTTTACACTTTGAAAATCAAGGTTATCGAAGGCCGAGGGAGGACAGTACCACCTGGATCATTTATGACTTACTATTTTTCTTTTCTTCTTGATCGTTCAGACCAATCTTTTGGTTTGGTAATCGATGAATGGATAAGGATTGTACGTATCTTGTTCAGAGTAGACGATATAACTCATCTGGACATAGAACAAATAGGATCTTCTTTCAATCTTGCTCTACTTACATACGATGTAAACATCTTAGAAATCGTCGACTCATATTGTACTACTCTTAAAGTTCTATTTTAA
Protein Sequence MPFLYSWILHYSTMESIKYSIKNLRRTIWEIEATKKQPDLYTLKIKVIEGRGRTVPPGSFMTYYFSFLLDRSDQSFGLVIDEWIRIVRILFRVDDITHLDIEQIGSSFNLALLTYDVNILEIVDSYCTTLKVLF

NCBI Accession NP_066185.1
Location 1928-2968
Gene Name C1
Protein Name rep
Coding Region ATGCCAAGACAGCCTAATTCTTTCCGTATTCAAGCAAGAAATATTTTTCTCACTTATCCTCAGTGTACAATACCAAAAGATGAAATGCTTCAACTGCTTCAAAACCTCAACTGGACAGTCGTCAAACCAACATATATCAGAGTCGCCGCCGAGAGACACGCCGACGGAACACCGCACCTCCACTGCCTTATACAACTTTCAGGAAAGTCCAACATCAAGGACTGCAGATTTTTCGACATTACTCACCCCCAACGGAGTACCTCTTTCCATCCTAATGTCCAATCAGCCAAAGACACCAATGCCGTCAAGAATTACATCACCAAAGAAGGTGATTATTGTGAATCCGGACAATACAAGGTCTCTGGGGGAACAAAAGCAAACAAGGACGCCGTCTACCACAACGCCGTCAATGCAGGAGGTGTACGAGAGGCTCTTGACATCATAAAGGCTGGGGATCCAAAGACATTCGTGACTCAACATCACAATGTAAAAGCCAACCTTGAACACATATTCGCGAAACCACCAGAACCCTGGAATCCGCCGTATCCTCTCTCCTCCTTCACAAACGTCCCCGAAGAAATGCAAGAGTGGGCCGATGATTACTTTGGCAGGCCTGTTGCCGACAGCCATAAGGCCAAATCCATTATCATAGAAGGGAACAGTAGAACGGGAAAAACGTGCTGGGCAAGAGCGTTAGGTACACACAACTACTTGTGTGGACACCTCGACTTCAACATGCGCGTGTATTCCAACGAAGTGGAATATAACGTCATAGATGACGTAGCCCCGACATACTTGAAGATGAAGCATTGGAAAGAGCTCATCGGGGCCCAAAGGGACTGGCAAAGCAATTGCAAATACGGGAAACCGGTTCAAATTAGAGGAGGGGTCCCCACCATTATACTTTGTAATCCTGGTGAGGGATCTAGCTTTCGAGATTTTTTAGACAAGCCTGAAAATGACGGCTTGAGACAATGGACATTATATAATGCCATTTTTATATTCCTGGATACTCCATTATTCGACAATGGAATCCATTAA
Protein Sequence MPRQPNSFRIQARNIFLTYPQCTIPKDEMLQLLQNLNWTVVKPTYIRVAAERHADGTPHLHCLIQLSGKSNIKDCRFFDITHPQRSTSFHPNVQSAKDTNAVKNYITKEGDYCESGQYKVSGGTKANKDAVYHNAVNAGGVREALDIIKAGDPKTFVTQHHNVKANLEHIFAKPPEPWNPPYPLSSFTNVPEEMQEWADDYFGRPVADSHKAKSIIIEGNSRTGKTCWARALGTHNYLCGHLDFNMRVYSNEVEYNVIDDVAPTYLKMKHWKELIGAQRDWQSNCKYGKPVQIRGGVPTIILCNPGEGSSFRDFLDKPENDGLRQWTLYNAIFIFLDTPLFDNGIH

NCBI Accession NP_066186.1
Location 2524-2889
Gene Name C4
Protein Name hypothetical protein
Coding Region ATGAAATGCTTCAACTGCTTCAAAACCTCAACTGGACAGTCGTCAAACCAACATATATCAGAGTCGCCGCCGAGAGACACGCCGACGGAACACCGCACCTCCACTGCCTTATACAACTTTCAGGAAAGTCCAACATCAAGGACTGCAGATTTTTCGACATTACTCACCCCCAACGGAGTACCTCTTTCCATCCTAATGTCCAATCAGCCAAAGACACCAATGCCGTCAAGAATTACATCACCAAAGAAGGTGATTATTGTGAATCCGGACAATACAAGGTCTCTGGGGGAACAAAAGCAAACAAGGACGCCGTCTACCACAACGCCGTCAATGCAGGAGGTGTACGAGAGGCTCTTGACATCATAA
Protein Sequence MKCFNCFKTSTGQSSNQHISESPPRDTPTEHRTSTALYNFQESPTSRTADFSTLLTPNGVPLSILMSNQPKTPMPSRITSPKKVIIVNPDNTRSLGEQKQTRTPSTTTPSMQEVYERLLTS

References More References in PubMed

1

Horseradish curly top virus is a distinct subgroup II geminivirus species with rep and C4 genes derived from a subgroup III ancestor.

Klute KA, et al.  J Gen Virol. 1996 Jul;77 ( Pt 7):1369-78. doi: 10.1099/0022-1317-77-7-1369.

PMID: 8757976
2

Spinach curly top virus: A Newly Described Curtovirus Species from Southwest Texas with Incongruent Gene Phylogenies.

Baliji S, et al.  Phytopathology. 2004 Jul;94(7):772-9. doi: 10.1094/PHYTO.2004.94.7.772.

PMID: 18943911
3

First Report of a New Curtovirus Species, Spinach severe curly top virus, in Commercial Spinach Plants (Spinacia oleracea) from South-Central Arizona.

Hernandez C, et al.  Plant Dis. 2010 Jul;94(7):917. doi: 10.1094/PDIS-94-7-0917B.

PMID: 30743586
4

Genome characterization and genetic diversity of beet curly top Iran virus: a geminivirus with a novel nonanucleotide.

Yazdi HR, et al.  Virus Genes. 2008 Jun;36(3):539-45. doi: 10.1007/s11262-008-0224-2. Epub 2008 Apr 10.

PMID: 18401697
5

Revisiting the classification of curtoviruses based on genome-wide pairwise identity.

Varsani A, et al.  Arch Virol. 2014 Jul;159(7):1873-82. doi: 10.1007/s00705-014-1982-x. Epub 2014 Jan 25.

PMID: 24463952