Horseradish curly top virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATGCTACCACGTGTCTTAAAATTGTTGGCTGGTCAAAAGTGGCGGCGACCGGTTTTATAAAGTAAAGTAAAGTAGACCCCACTAGGAAACTTGGTCGGCAAGTTTAACTTTATCCTTTTAAATAAATACGGTATTTGTACATATATTTATATATGTACAAATGATGGTATGTCTACCAGACTGGGTATTCCTACTATTCATAGCTAGTATTCTTCTACAGGCTTGTACGAATTTTTATGGGACCTTTCACAGTGGGTCAATTTCCAAGAAATTATCCAGCCTTGTTAGCCGTTTCGACGAGTTGTTTTTTCAGATACAACAAGTGGTGTATACTAGGTATCCGTCACGAAGTCGAATCGTTAACCCTAGAAGAAGGGGAAGCCTTTCTGGGATTCCAGAAGGAGGTGAAGAAACTGTTGAAGCGTAAGTGTACTTTTTCTAGAAAGTGTGAGTTGTATGAGGAGATATACAAGAAATACTTATCAGATGGGCCAGAAGAGAAAGGCTCCCTACCAACCGTCATGGTCGAAGAAGAGGAAGACTGGGCCCATGAGAAAATACCAATGGAAGAGGCCTGCTCGCAAGACGAAGGCCCTGAAATTGAAGATGTATGATGATATGCTTGGTGCTGGTGGATTGGGTTCTACCATTAGCAATAATGGTATGATTACTATGTTGAATAATTATGTCCAGGGTATTGGAGATAGTCAACGGTCTACTAACACGACTATTACGAAGCATATGAAGTTTGATATGGCGCTAATGGGCAGTTCTAGTTTTTGGGATACTCCAAATTACATGACTCAATATCATTGGATTATCATAGACAAGGATGTTGGTTCGGTGTTTCCTGTTAAGTTGGATGATATATTTGATATTCCATCAAATGGTCAAGCTATGCCTTCTACTTTCCGCATTAGGAGAGATAGTAATGAGAGGTTTATTGTGAAGAGGAAGTGGACTACACATTTAATGTCTACTGGAGCAGCTTATGGTAGCAAGGATATTTACAAGGGTCCTTCTATGCCTAATTACAAGAAGGGTATGAACATCAATATTCGCAACTTGAATGTGAAGACTATATGGAAGGATACTGGTGGCGGGAAATACGAAGATGTTAAGGAGAATGCTATACTTTATATTGTTGTTAATGATAATGCCGATAATACTAATATGTATGCTACATTATTTGGCAATTGCCGATGTTATTTTTATTAATAAAATAAGTAATGTATTTTAAAGAATGTGCTTGGGTTCCTACTTTTGCCCTGCCATGTCCCCTTATCCTTAGGGTTTAGTTTTGAAGCAGAGCGAGCGCAGCGAGCGTAAACAACCCGAATAAACGGACTAGGCTTTGATCTATAAATGCAGGGCTTTAGCCCTGCATTTCTAGACAAAGGCGTCAATAGACTGTTAACTAACAGTTATAGTATCAAACGCAATGAACCCGAAGGGTTCACAAAAAAAAAGCAAGCGTAACTGTCAAGTAGCGCGCAGAAGGGGGAAAAATCAAGATACACACAAAAAGGAAGACAATATATTATTAAACTGCGCTTCTTTATTAAAATAGAACTTTAAGAGTAGTACAATATGAGTCGACGATTTCTAAGATGTTTACATCGTATGTAAGTAGAGCAAGATTGAAAGAAGATCCTATTTGTTCTATGTCCAGATGAGTTATATCGTCTACTCTGAACAAGATACGTACAATCCTTATCCATTCATCGATTACCAAACCAAAAGATTGGTCTGAACGATCAAGAAGAAAAGAAAAATAGTAAGTCATAAATGATCCAGGTGGTACTGTCCTCCCTCGGCCTTCGATAACCTTGATTTTCAAAGTGTAAAGATCCGGCTGCTTCTTTGTTGCTTCGATCTCCCATATTGTGCGCCTGAGATTTTTTATTGAATATTTAATGGATTCCATTGTCGAATAATGGAGTATCCAGGAATATAAAAATGGCATTATATAATGTCCATTGTCTCAAGCCGTCATTTTCAGGCTTGTCTAAAAAATCTCGAAAGCTAGATCCCTCACCAGGATTACAAAGTATAATGGTGGGGACCCCTCCTCTAATTTGAACCGGTTTCCCGTATTTGCAATTGCTTTGCCAGTCCCTTTGGGCCCCGATGAGCTCTTTCCAATGCTTCATCTTCAAGTATGTCGGGGCTACGTCATCTATGACGTTATATTCCACTTCGTTGGAATACACGCGCATGTTGAAGTCGAGGTGTCCACACAAGTAGTTGTGTGTACCTAACGCTCTTGCCCAGCACGTTTTTCCCGTTCTACTGTTCCCTTCTATGATAATGGATTTGGCCTTATGGCTGTCGGCAACAGGCCTGCCAAAGTAATCATCGGCCCACTCTTGCATTTCTTCGGGGACGTTTGTGAAGGAGGAGAGAGGATACGGCGGATTCCAGGGTTCTGGTGGTTTCGCGAATATGTGTTCAAGGTTGGCTTTTACATTGTGATGTTGAGTCACGAATGTCTTTGGATCCCCAGCCTTTATGATGTCAAGAGCCTCTCGTACACCTCCTGCATTGACGGCGTTGTGGTAGACGGCGTCCTTGTTTGCTTTTGTTCCCCCAGAGACCTTGTATTGTCCGGATTCACAATAATCACCTTCTTTGGTGATGTAATTCTTGACGGCATTGGTGTCTTTGGCTGATTGGACATTAGGATGGAAAGAGGTACTCCGTTGGGGGTGAGTAATGTCGAAAAATCTGCAGTCCTTGATGTTGGACTTTCCTGAAAGTTGTATAAGGCAGTGGAGGTGCGGTGTTCCGTCGGCGTGTCTCTCGGCGGCGACTCTGATATATGTTGGTTTGACGACTGTCCAGTTGAGGTTTTGAAGCAGTTGAAGCATTTCATCTTTTGGTATTGTACACTGAGGATAAGTGAGAAAAATATTTCTTGCTTGAATACGGAAAGAATTAGGCTGTCTTGGCATTTTGAACTGGGACTCCAGGTTTTAGGTTTAATCCTGTCATATTCGTGGAGTTCTGGAGTCTCATTTATACTAAAACCTCTTAAGGCCAATAGCGGCCATCCGTTCTAATATT
Gene Information
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NCBI Accession
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NP_066181.1
|
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Location
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175-441 |
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Gene Name
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V3 |
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Protein Name
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movement protein |
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Coding Region
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ATGATGGTATGTCTACCAGACTGGGTATTCCTACTATTCATAGCTAGTATTCTTCTACAGGCTTGTACGAATTTTTATGGGACCTTTCACAGTGGGTCAATTTCCAAGAAATTATCCAGCCTTGTTAGCCGTTTCGACGAGTTGTTTTTTCAGATACAACAAGTGGTGTATACTAGGTATCCGTCACGAAGTCGAATCGTTAACCCTAGAAGAAGGGGAAGCCTTTCTGGGATTCCAGAAGGAGGTGAAGAAACTGTTGAAGCGTAA |
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Protein Sequence
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MMVCLPDWVFLLFIASILLQACTNFYGTFHSGSISKKLSSLVSRFDELFFQIQQVVYTRYPSRSRIVNPRRRGSLSGIPEGGEETVEA |
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NCBI Accession
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NP_066182.1
|
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Location
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251-628 |
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Gene Name
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V2 |
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Protein Name
|
hypothetical protein |
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Coding Region
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ATGGGACCTTTCACAGTGGGTCAATTTCCAAGAAATTATCCAGCCTTGTTAGCCGTTTCGACGAGTTGTTTTTTCAGATACAACAAGTGGTGTATACTAGGTATCCGTCACGAAGTCGAATCGTTAACCCTAGAAGAAGGGGAAGCCTTTCTGGGATTCCAGAAGGAGGTGAAGAAACTGTTGAAGCGTAAGTGTACTTTTTCTAGAAAGTGTGAGTTGTATGAGGAGATATACAAGAAATACTTATCAGATGGGCCAGAAGAGAAAGGCTCCCTACCAACCGTCATGGTCGAAGAAGAGGAAGACTGGGCCCATGAGAAAATACCAATGGAAGAGGCCTGCTCGCAAGACGAAGGCCCTGAAATTGAAGATGTATGA |
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Protein Sequence
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MGPFTVGQFPRNYPALLAVSTSCFFRYNKWCILGIRHEVESLTLEEGEAFLGFQKEVKKLLKRKCTFSRKCELYEEIYKKYLSDGPEEKGSLPTVMVEEEEDWAHEKIPMEEACSQDEGPEIEDV |
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NCBI Accession
|
NP_066183.1
|
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Location
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471-1232 |
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Gene Name
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V1 |
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Protein Name
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capsid protein |
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Coding Region
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ATGAGGAGATATACAAGAAATACTTATCAGATGGGCCAGAAGAGAAAGGCTCCCTACCAACCGTCATGGTCGAAGAAGAGGAAGACTGGGCCCATGAGAAAATACCAATGGAAGAGGCCTGCTCGCAAGACGAAGGCCCTGAAATTGAAGATGTATGATGATATGCTTGGTGCTGGTGGATTGGGTTCTACCATTAGCAATAATGGTATGATTACTATGTTGAATAATTATGTCCAGGGTATTGGAGATAGTCAACGGTCTACTAACACGACTATTACGAAGCATATGAAGTTTGATATGGCGCTAATGGGCAGTTCTAGTTTTTGGGATACTCCAAATTACATGACTCAATATCATTGGATTATCATAGACAAGGATGTTGGTTCGGTGTTTCCTGTTAAGTTGGATGATATATTTGATATTCCATCAAATGGTCAAGCTATGCCTTCTACTTTCCGCATTAGGAGAGATAGTAATGAGAGGTTTATTGTGAAGAGGAAGTGGACTACACATTTAATGTCTACTGGAGCAGCTTATGGTAGCAAGGATATTTACAAGGGTCCTTCTATGCCTAATTACAAGAAGGGTATGAACATCAATATTCGCAACTTGAATGTGAAGACTATATGGAAGGATACTGGTGGCGGGAAATACGAAGATGTTAAGGAGAATGCTATACTTTATATTGTTGTTAATGATAATGCCGATAATACTAATATGTATGCTACATTATTTGGCAATTGCCGATGTTATTTTTATTAA |
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Protein Sequence
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MRRYTRNTYQMGQKRKAPYQPSWSKKRKTGPMRKYQWKRPARKTKALKLKMYDDMLGAGGLGSTISNNGMITMLNNYVQGIGDSQRSTNTTITKHMKFDMALMGSSSFWDTPNYMTQYHWIIIDKDVGSVFPVKLDDIFDIPSNGQAMPSTFRIRRDSNERFIVKRKWTTHLMSTGAAYGSKDIYKGPSMPNYKKGMNINIRNLNVKTIWKDTGGGKYEDVKENAILYIVVNDNADNTNMYATLFGNCRCYFY |
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NCBI Accession
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NP_066184.1
|
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Location
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1576-1980 |
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Gene Name
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C2 |
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Protein Name
|
hypothetical protein |
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Coding Region
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ATGCCATTTTTATATTCCTGGATACTCCATTATTCGACAATGGAATCCATTAAATATTCAATAAAAAATCTCAGGCGCACAATATGGGAGATCGAAGCAACAAAGAAGCAGCCGGATCTTTACACTTTGAAAATCAAGGTTATCGAAGGCCGAGGGAGGACAGTACCACCTGGATCATTTATGACTTACTATTTTTCTTTTCTTCTTGATCGTTCAGACCAATCTTTTGGTTTGGTAATCGATGAATGGATAAGGATTGTACGTATCTTGTTCAGAGTAGACGATATAACTCATCTGGACATAGAACAAATAGGATCTTCTTTCAATCTTGCTCTACTTACATACGATGTAAACATCTTAGAAATCGTCGACTCATATTGTACTACTCTTAAAGTTCTATTTTAA |
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Protein Sequence
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MPFLYSWILHYSTMESIKYSIKNLRRTIWEIEATKKQPDLYTLKIKVIEGRGRTVPPGSFMTYYFSFLLDRSDQSFGLVIDEWIRIVRILFRVDDITHLDIEQIGSSFNLALLTYDVNILEIVDSYCTTLKVLF |
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NCBI Accession
|
NP_066185.1
|
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Location
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1928-2968 |
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Gene Name
|
C1 |
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Protein Name
|
rep |
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Coding Region
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ATGCCAAGACAGCCTAATTCTTTCCGTATTCAAGCAAGAAATATTTTTCTCACTTATCCTCAGTGTACAATACCAAAAGATGAAATGCTTCAACTGCTTCAAAACCTCAACTGGACAGTCGTCAAACCAACATATATCAGAGTCGCCGCCGAGAGACACGCCGACGGAACACCGCACCTCCACTGCCTTATACAACTTTCAGGAAAGTCCAACATCAAGGACTGCAGATTTTTCGACATTACTCACCCCCAACGGAGTACCTCTTTCCATCCTAATGTCCAATCAGCCAAAGACACCAATGCCGTCAAGAATTACATCACCAAAGAAGGTGATTATTGTGAATCCGGACAATACAAGGTCTCTGGGGGAACAAAAGCAAACAAGGACGCCGTCTACCACAACGCCGTCAATGCAGGAGGTGTACGAGAGGCTCTTGACATCATAAAGGCTGGGGATCCAAAGACATTCGTGACTCAACATCACAATGTAAAAGCCAACCTTGAACACATATTCGCGAAACCACCAGAACCCTGGAATCCGCCGTATCCTCTCTCCTCCTTCACAAACGTCCCCGAAGAAATGCAAGAGTGGGCCGATGATTACTTTGGCAGGCCTGTTGCCGACAGCCATAAGGCCAAATCCATTATCATAGAAGGGAACAGTAGAACGGGAAAAACGTGCTGGGCAAGAGCGTTAGGTACACACAACTACTTGTGTGGACACCTCGACTTCAACATGCGCGTGTATTCCAACGAAGTGGAATATAACGTCATAGATGACGTAGCCCCGACATACTTGAAGATGAAGCATTGGAAAGAGCTCATCGGGGCCCAAAGGGACTGGCAAAGCAATTGCAAATACGGGAAACCGGTTCAAATTAGAGGAGGGGTCCCCACCATTATACTTTGTAATCCTGGTGAGGGATCTAGCTTTCGAGATTTTTTAGACAAGCCTGAAAATGACGGCTTGAGACAATGGACATTATATAATGCCATTTTTATATTCCTGGATACTCCATTATTCGACAATGGAATCCATTAA |
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Protein Sequence
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MPRQPNSFRIQARNIFLTYPQCTIPKDEMLQLLQNLNWTVVKPTYIRVAAERHADGTPHLHCLIQLSGKSNIKDCRFFDITHPQRSTSFHPNVQSAKDTNAVKNYITKEGDYCESGQYKVSGGTKANKDAVYHNAVNAGGVREALDIIKAGDPKTFVTQHHNVKANLEHIFAKPPEPWNPPYPLSSFTNVPEEMQEWADDYFGRPVADSHKAKSIIIEGNSRTGKTCWARALGTHNYLCGHLDFNMRVYSNEVEYNVIDDVAPTYLKMKHWKELIGAQRDWQSNCKYGKPVQIRGGVPTIILCNPGEGSSFRDFLDKPENDGLRQWTLYNAIFIFLDTPLFDNGIH |
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NCBI Accession
|
NP_066186.1
|
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Location
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2524-2889 |
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Gene Name
|
C4 |
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Protein Name
|
hypothetical protein |
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Coding Region
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ATGAAATGCTTCAACTGCTTCAAAACCTCAACTGGACAGTCGTCAAACCAACATATATCAGAGTCGCCGCCGAGAGACACGCCGACGGAACACCGCACCTCCACTGCCTTATACAACTTTCAGGAAAGTCCAACATCAAGGACTGCAGATTTTTCGACATTACTCACCCCCAACGGAGTACCTCTTTCCATCCTAATGTCCAATCAGCCAAAGACACCAATGCCGTCAAGAATTACATCACCAAAGAAGGTGATTATTGTGAATCCGGACAATACAAGGTCTCTGGGGGAACAAAAGCAAACAAGGACGCCGTCTACCACAACGCCGTCAATGCAGGAGGTGTACGAGAGGCTCTTGACATCATAA |
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Protein Sequence
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MKCFNCFKTSTGQSSNQHISESPPRDTPTEHRTSTALYNFQESPTSRTADFSTLLTPNGVPLSILMSNQPKTPMPSRITSPKKVIIVNPDNTRSLGEQKQTRTPSTTTPSMQEVYERLLTS |