Passion fruit chlorotic mottle virus

Basic Information

Genus Citlodavirus
NCBI Assembly GCF_004132865.1
Isolate Brazil
Release date 2019/2/12
Submitter Fontenele,R.S., Abreu,R.A., Lamas,N.S., Alves-Freitas,D.M.T., Vidal,A.H., Poppiel,R.R., Melo,F.L., Lacorte,C., Martin,D.P., Campos,M.A., Varsani,A., Ribeiro,S.G.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_040706
TAATATTACAAGCGCCCTCGTCGGTCACACGTGGCAGGATCTGGACCATTGAATGTGATGTACAGATGGACGGTTGAGATTCACGTATTATGGAGGAGAATAAATGCGATGTCAGTAAAGACATCAGAAAGGACATTTATTGATAGTGGAGAGAGAAAAGGTAAGGTTTTTTGAATTATTGTAGATAACACAGCACGTGGTGGGGTCGGTGAGACATTAAAGGTAGATTTTTATAGCGGGAAAGTGGTTAGCACTTTCACATCTTCAAAAATCGTACCGATGTGACTGGGGGTGTATAAAAGAGCAATAATTGCAGCTCTTTTGTACCTAGAAATGAGCATATCTTCTGAAATATTTGAGGAGATAAAAGAAAATAAGGTGAGTATCACCGTTTTTTTTATTATTTTCTTTTGCGTATCTGTTATAAATGTCGTGTGCTGTGCCTTTGGATTTTGGCAATCTGCCGGACCACGTGGTGGGGCTGTTGTGTATGTTGGCGGTGAGGCTATTAATGATGGAGGAGAAGAGATATGTTCTGGAAAAAAGGCACAGCCTGGCTAACAGGCATAGGATTCTGATAAGAATTATTCGCAAATGGGGCAGGAAAAATCGCGTAAAGGCGAATGGTGACTACGCGGAGTGGAAGAACTTATGGGCCTCCTACGGCCCAGACAAGGAGAAGATTTCCGCCCATGAGAAGGAGGCCAGCTATGGACCGAGTGATTGGGCCGTCAAAAAAAACTGTGAAGCGGATGAAAAAGGGAAAGTCCGGCGGGATTCCGGTTGGATGTAAGGGGCCTTGTAAAACCCATACAGTCGACGTTATTGCGACTGTAACTCATGATGGCAAGGGGCCAGGTTTAGTATCAAATATCAGCAAAGGTGATGACTTTGGTCAGCGTGAGGGTAGACGTATTCGGGTGACGAAATTATTACTGAGGGGTAAAGTATGGCTCCCTCAGGATAAGGCGACCATCGCTGGATCGAATATAATGAGACTGTGGGTTATGAAGGATAGGCGCCCTGGCAGTCAGCATGTTGCATTTGAGGCATTGTTTGACATGGCTGACAAAGAGCCCTCTACGGCATTAGTGAAGATGGATTATAGAGACAGATTTATTGTTATTAAGGATATGGAAATCGACCTGCATGGAGGGAGAGATTTCCGTGTGGACGAGGAAACATTTGATATAATGGTTCCGATAAATTGTGACGTGTTATTTGATCACAATGACGAGGGGTCTTTGACCACCACGTTAGAGAACGGGATTATCGTTTATTATGCTGTTACGGATCCCGCTCAAGTGATGCAACTCACAGCACAGTGTAGATTGTACTTTTTTGACTCTACGTCCAATTAATGCAAATGTTGTTTTTTTTAATCAGGATGTCGGATTCACAAATTAAGGTGTTTAATGAGTATCACAGCAGTAAGCGTGTTGAGTATCCTCTGACAAATGAGAAGACAATGATAAAGCTGGAATTCCCCTCTATGGGAGATATAAGTTGGTCAAGACTTAAGGGTCATTGTTTAAAAATTGACCATTGTCAGATAAGTTACACCCCTCAGGTGCCAGCAAATGCTAGTGGCAATGTATGCTTTGAGATACATGATATGCGAATGGAAGCGGATAAAACGTTACAGGCAGAGTACACGGTGCCCATCAGGTGTGCGGTGGAGTTGAATTTTTTTTCAACTTCTTTTTTCAGTATGAAAGACGATGTGCCATGGGAAGTGTTTTATTCCGTAGAGAATAGTGATGTACGTTCTGGTACGAGATTCTGTAAGATGAAAGCAAGGGTTAAGCTGTCTAGTGCTAAGCACAGCACCCATATTAACTTTAGATCCCCGACGATAAAAATAATATCGAGGGGGTTTAGCGAACGTGATGTTGATTTTCATCACGTGGCAATACCTAAGGCAGAGAGGTTACTCTGCAGGGGTAGTTCTGTAATAACGAGCAGGCCTCGTTTTGAGATCGAGGCTGGTGATAGTTGGGCCAGTAAGTCCAGCATTGGTGGTAGCGACGTGGACTATCCGTATAAGGAACTGGGCCGATTAAACGCGGATGCATTAGAGATTGGGCCCAGTGCAAGCCAAGTTGGTATTGGGCCAGGTAATGAGCCCAATAAAGGAAAGGTTGTAATGGATGCAGTTGAATTTGCTGAGGTGGTGGCGGATGCAGTACGGCATGGAAGTGTAATAAACAATAATATTATTAATGATAATAAGAAAAAGGCTCCGGCATAATGTGGGTCGGAGCATAGGAGCGAACTTGAGAGCGATACTTGCGGAGCGAAATACAACGCGAGAAAAGGATTATGTTTATTAATATATGCTGCGCAGCACAGGCGAAATGTAATGAGCCGTTTTTAATATGGGTGTTGCAACTTCATTTCAAATGTTATAAAATGTTCAGAAAACAACAGATAGTACTTTTTATTGAGATGGTAAAAGTAGAGTACATAATAATTTGGATAATGAATCCAAATTAGTCGAACCACTTTTCCTCTGGGGATAGGGTGTACTCATCGACGTTTGTTTCCCACCAAAGTCTGATGTCAGGTGACATCATGTCCCTCCAATCCATGTCTGGATTGCAGAGAACTATTGTTGGAATACCTCCGTTGATGGTCCTATCCGGTTTATACTTAATGTTAACTGTGAAATCTTTTTGGCATCCCAATAAAGATTTCATTATTTCTGTTGTGATTTTGCTATAACTTATGTCGTCTATTACATTATACAGAGCAAAATCATTATAATTATGAAACTTCAACGATCCGGTGGAGTAGTTATGTAATCCCATAGATCTGGCCCAGCAAGTCTTTCCCGTGCGAGAAGGTCCACAGATGAAGATGGACTTGGGCCTGTTGGGCTTTGCGTCGGGCTCCTGCAAGCATCACAGTAGTAGTAATGCATTGAGCGTATGGGAATTTCAGACTCTGTTAGCAGATGTGCTCTGCAGTCAAAGCATAAATTAATGCGTACAAATTCTGTACTCACGCATAATATGTTGCGATTAGCCCATGCCCTGACATGATGTGGTAGATTTGGGAAGTCGATGAACTGGGGAGTGTAAGGGACAAATCTACGTTGGAAGTGATCCCTTGCGAATGATTGAATTGCTGGCCAGCGTAGAACATAGTCCATGGGACGATGTTCCTTCACCATGCGGTAGAAGGTATCTTCGTCCGTAGAGATTTGGAGTATGTCTCTCCAGATTGTCTGTAAGTCTCTAGAAGGTGGTCTCCTGCTGGTGGAGAAATCACCTTCCTCAATGAAGTCGTTATCCTTGCGGATATATCGGTATGAAGCTGCTGGTGATCTAAGTGGTTCGAACGGCGGATGAAATATTCTGTTATCGTGCAATTCGTCTTTTATGTCGAAGAACCTTGGGTTAGTCGTATCAAGACGACGTCGCATTTGGACCATAGCATGTATATGGGGGTCTCCGTTTTGATGAGTTTCAAAACAGACGCAAATAAAAAAAATATCGAAGCTGCTGGGCTTTGATTTTAGGAAATTAAGGATATATTCCTTTGGGAGGAAGCATTGAGCGAAGGTTAGGAAAATGTTTTTTGCACTGAAGCGGAAGTTGGATGTTGAAGGCATTTTTTGTTTTCTGAAGTGAATCGAGGAGTCAACGCAAAGCGTACGGCGGATGAAAAGTCAACGGTGTGAGTAAACTCTATGGGATAACTAAGAGTGTGAGTGTGACCGTATACGAGGGCGCTACTTA

Gene Information

NCBI Accession YP_009553192.1
Location 334-561
Protein Name hypothetical protein
Coding Region ATGAGCATATCTTCTGAAATATTTGAGGAGATAAAAGAAAATAAGGTGAGTATCACCGTTTTTTTTATTATTTTCTTTTGCGTATCTGTTATAAATGTCGTGTGCTGTGCCTTTGGATTTTGGCAATCTGCCGGACCACGTGGTGGGGCTGTTGTGTATGTTGGCGGTGAGGCTATTAATGATGGAGGAGAAGAGATATGTTCTGGAAAAAAGGCACAGCCTGGCTAA
Protein Sequence MSISSEIFEEIKENKVSITVFFIIFFCVSVINVVCCAFGFWQSAGPRGGAVVYVGGEAINDGGEEICSGKKAQPG

NCBI Accession YP_009553193.1
Location 428-793
Protein Name hypothetical v2 protein
Coding Region ATGTCGTGTGCTGTGCCTTTGGATTTTGGCAATCTGCCGGACCACGTGGTGGGGCTGTTGTGTATGTTGGCGGTGAGGCTATTAATGATGGAGGAGAAGAGATATGTTCTGGAAAAAAGGCACAGCCTGGCTAACAGGCATAGGATTCTGATAAGAATTATTCGCAAATGGGGCAGGAAAAATCGCGTAAAGGCGAATGGTGACTACGCGGAGTGGAAGAACTTATGGGCCTCCTACGGCCCAGACAAGGAGAAGATTTCCGCCCATGAGAAGGAGGCCAGCTATGGACCGAGTGATTGGGCCGTCAAAAAAAACTGTGAAGCGGATGAAAAAGGGAAAGTCCGGCGGGATTCCGGTTGGATGTAA
Protein Sequence MSCAVPLDFGNLPDHVVGLLCMLAVRLLMMEEKRYVLEKRHSLANRHRILIRIIRKWGRKNRVKANGDYAEWKNLWASYGPDKEKISAHEKEASYGPSDWAVKKNCEADEKGKVRRDSGWM

NCBI Accession YP_009553194.1
Location 624-1361
Protein Name capsid protein
Coding Region ATGGTGACTACGCGGAGTGGAAGAACTTATGGGCCTCCTACGGCCCAGACAAGGAGAAGATTTCCGCCCATGAGAAGGAGGCCAGCTATGGACCGAGTGATTGGGCCGTCAAAAAAAACTGTGAAGCGGATGAAAAAGGGAAAGTCCGGCGGGATTCCGGTTGGATGTAAGGGGCCTTGTAAAACCCATACAGTCGACGTTATTGCGACTGTAACTCATGATGGCAAGGGGCCAGGTTTAGTATCAAATATCAGCAAAGGTGATGACTTTGGTCAGCGTGAGGGTAGACGTATTCGGGTGACGAAATTATTACTGAGGGGTAAAGTATGGCTCCCTCAGGATAAGGCGACCATCGCTGGATCGAATATAATGAGACTGTGGGTTATGAAGGATAGGCGCCCTGGCAGTCAGCATGTTGCATTTGAGGCATTGTTTGACATGGCTGACAAAGAGCCCTCTACGGCATTAGTGAAGATGGATTATAGAGACAGATTTATTGTTATTAAGGATATGGAAATCGACCTGCATGGAGGGAGAGATTTCCGTGTGGACGAGGAAACATTTGATATAATGGTTCCGATAAATTGTGACGTGTTATTTGATCACAATGACGAGGGGTCTTTGACCACCACGTTAGAGAACGGGATTATCGTTTATTATGCTGTTACGGATCCCGCTCAAGTGATGCAACTCACAGCACAGTGTAGATTGTACTTTTTTGACTCTACGTCCAATTAA
Protein Sequence MVTTRSGRTYGPPTAQTRRRFPPMRRRPAMDRVIGPSKKTVKRMKKGKSGGIPVGCKGPCKTHTVDVIATVTHDGKGPGLVSNISKGDDFGQREGRRIRVTKLLLRGKVWLPQDKATIAGSNIMRLWVMKDRRPGSQHVAFEALFDMADKEPSTALVKMDYRDRFIVIKDMEIDLHGGRDFRVDEETFDIMVPINCDVLFDHNDEGSLTTTLENGIIVYYAVTDPAQVMQLTAQCRLYFFDSTSN

NCBI Accession YP_009553195.1
Location 1361-2251
Protein Name movement protein
Coding Region ATGCAAATGTTGTTTTTTTTAATCAGGATGTCGGATTCACAAATTAAGGTGTTTAATGAGTATCACAGCAGTAAGCGTGTTGAGTATCCTCTGACAAATGAGAAGACAATGATAAAGCTGGAATTCCCCTCTATGGGAGATATAAGTTGGTCAAGACTTAAGGGTCATTGTTTAAAAATTGACCATTGTCAGATAAGTTACACCCCTCAGGTGCCAGCAAATGCTAGTGGCAATGTATGCTTTGAGATACATGATATGCGAATGGAAGCGGATAAAACGTTACAGGCAGAGTACACGGTGCCCATCAGGTGTGCGGTGGAGTTGAATTTTTTTTCAACTTCTTTTTTCAGTATGAAAGACGATGTGCCATGGGAAGTGTTTTATTCCGTAGAGAATAGTGATGTACGTTCTGGTACGAGATTCTGTAAGATGAAAGCAAGGGTTAAGCTGTCTAGTGCTAAGCACAGCACCCATATTAACTTTAGATCCCCGACGATAAAAATAATATCGAGGGGGTTTAGCGAACGTGATGTTGATTTTCATCACGTGGCAATACCTAAGGCAGAGAGGTTACTCTGCAGGGGTAGTTCTGTAATAACGAGCAGGCCTCGTTTTGAGATCGAGGCTGGTGATAGTTGGGCCAGTAAGTCCAGCATTGGTGGTAGCGACGTGGACTATCCGTATAAGGAACTGGGCCGATTAAACGCGGATGCATTAGAGATTGGGCCCAGTGCAAGCCAAGTTGGTATTGGGCCAGGTAATGAGCCCAATAAAGGAAAGGTTGTAATGGATGCAGTTGAATTTGCTGAGGTGGTGGCGGATGCAGTACGGCATGGAAGTGTAATAAACAATAATATTATTAATGATAATAAGAAAAAGGCTCCGGCATAA
Protein Sequence MQMLFFLIRMSDSQIKVFNEYHSSKRVEYPLTNEKTMIKLEFPSMGDISWSRLKGHCLKIDHCQISYTPQVPANASGNVCFEIHDMRMEADKTLQAEYTVPIRCAVELNFFSTSFFSMKDDVPWEVFYSVENSDVRSGTRFCKMKARVKLSSAKHSTHINFRSPTIKIISRGFSERDVDFHHVAIPKAERLLCRGSSVITSRPRFEIEAGDSWASKSSIGGSDVDYPYKELGRLNADALEIGPSASQVGIGPGNEPNKGKVVMDAVEFAEVVADAVRHGSVINNNIINDNKKKAPA

NCBI Accession YP_009553196.1
Location 2493-2828,2993-3616
Protein Name replication associated protein
Coding Region ATGCCTTCAACATCCAACTTCCGCTTCAGTGCAAAAAACATTTTCCTAACCTTCGCTCAATGCTTCCTCCCAAAGGAATATATCCTTAATTTCCTAAAATCAAAGCCCAGCAGCTTCGATATTTTTTTTATTTGCGTCTGTTTTGAAACTCATCAAAACGGAGACCCCCATATACATGCTATGGTCCAAATGCGACGTCGTCTTGATACGACTAACCCAAGGTTCTTCGACATAAAAGACGAATTGCACGATAACAGAATATTTCATCCGCCGTTCGAACCACTTAGATCACCAGCAGCTTCATACCGATATATCCGCAAGGATAACGACTTCATTGAGGAAGGTGATTTCTCCACCAGCAGGAGACCACCTTCTAGAGACTTACAGACAATCTGGAGAGACATACTCCAAATCTCTACGGACGAAGATACCTTCTACCGCATGGTGAAGGAACATCGTCCCATGGACTATGTTCTACGCTGGCCAGCAATTCAATCATTCGCAAGGGATCACTTCCAACGTAGATTTGTCCCTTACACTCCCCAGTTCATCGACTTCCCAAATCTACCACATCATGTCAGGGCATGGGCTAATCGCAACATATTATGCGTGAGTACAGAATTTACTTGCTGGGCCAGATCTATGGGATTACATAACTACTCCACCGGATCGTTGAAGTTTCATAATTATAATGATTTTGCTCTGTATAATGTAATAGACGACATAAGTTATAGCAAAATCACAACAGAAATAATGAAATCTTTATTGGGATGCCAAAAAGATTTCACAGTTAACATTAAGTATAAACCGGATAGGACCATCAACGGAGGTATTCCAACAATAGTTCTCTGCAATCCAGACATGGATTGGAGGGACATGATGTCACCTGACATCAGACTTTGGTGGGAAACAAACGTCGATGAGTACACCCTATCCCCAGAGGAAAAGTGGTTCGACTAA
Protein Sequence MPSTSNFRFSAKNIFLTFAQCFLPKEYILNFLKSKPSSFDIFFICVCFETHQNGDPHIHAMVQMRRRLDTTNPRFFDIKDELHDNRIFHPPFEPLRSPAASYRYIRKDNDFIEEGDFSTSRRPPSRDLQTIWRDILQISTDEDTFYRMVKEHRPMDYVLRWPAIQSFARDHFQRRFVPYTPQFIDFPNLPHHVRAWANRNILCVSTEFTCWARSMGLHNYSTGSLKFHNYNDFALYNVIDDISYSKITTEIMKSLLGCQKDFTVNIKYKPDRTINGGIPTIVLCNPDMDWRDMMSPDIRLWWETNVDEYTLSPEEKWFD

NCBI Accession YP_009553197.1
Location 2777-3616
Protein Name RepA
Coding Region ATGCCTTCAACATCCAACTTCCGCTTCAGTGCAAAAAACATTTTCCTAACCTTCGCTCAATGCTTCCTCCCAAAGGAATATATCCTTAATTTCCTAAAATCAAAGCCCAGCAGCTTCGATATTTTTTTTATTTGCGTCTGTTTTGAAACTCATCAAAACGGAGACCCCCATATACATGCTATGGTCCAAATGCGACGTCGTCTTGATACGACTAACCCAAGGTTCTTCGACATAAAAGACGAATTGCACGATAACAGAATATTTCATCCGCCGTTCGAACCACTTAGATCACCAGCAGCTTCATACCGATATATCCGCAAGGATAACGACTTCATTGAGGAAGGTGATTTCTCCACCAGCAGGAGACCACCTTCTAGAGACTTACAGACAATCTGGAGAGACATACTCCAAATCTCTACGGACGAAGATACCTTCTACCGCATGGTGAAGGAACATCGTCCCATGGACTATGTTCTACGCTGGCCAGCAATTCAATCATTCGCAAGGGATCACTTCCAACGTAGATTTGTCCCTTACACTCCCCAGTTCATCGACTTCCCAAATCTACCACATCATGTCAGGGCATGGGCTAATCGCAACATATTATGCGTGAGTACAGAATTTGTACGCATTAATTTATGCTTTGACTGCAGAGCACATCTGCTAACAGAGTCTGAAATTCCCATACGCTCAATGCATTACTACTACTGTGATGCTTGCAGGAGCCCGACGCAAAGCCCAACAGGCCCAAGTCCATCTTCATCTGTGGACCTTCTCGCACGGGAAAGACTTGCTGGGCCAGATCTATGGGATTACATAACTACTCCACCGGATCGTTGA
Protein Sequence MPSTSNFRFSAKNIFLTFAQCFLPKEYILNFLKSKPSSFDIFFICVCFETHQNGDPHIHAMVQMRRRLDTTNPRFFDIKDELHDNRIFHPPFEPLRSPAASYRYIRKDNDFIEEGDFSTSRRPPSRDLQTIWRDILQISTDEDTFYRMVKEHRPMDYVLRWPAIQSFARDHFQRRFVPYTPQFIDFPNLPHHVRAWANRNILCVSTEFVRINLCFDCRAHLLTESEIPIRSMHYYYCDACRSPTQSPTGPSPSSSVDLLARERLAGPDLWDYITTPPDR

References More References in PubMed

1

Passion Fruit Chlorotic Mottle Virus: Molecular Characterization of a New Divergent Geminivirus in Brazil.

Fontenele RS, et al.  Viruses. 2018 Apr 2;10(4):169. doi: 10.3390/v10040169.

PMID: 29614801
2

First report of Passion fruit green spot virus in yellow Passion fruit (Passiflora edulis f. flavicarpa) in Casanare, Colombia.

Roy A, et al.  Plant Dis. 2022 Dec 5. doi: 10.1094/PDIS-09-22-2267-PDN. Online ahead of print.

PMID: 36471457
3

First Report of Passiflora latent virus in Passion fruit (Passiflora edulis) in China.

Bao S, et al.  Plant Dis. 2023 Jun 27. doi: 10.1094/PDIS-05-23-0896-PDN. Online ahead of print.

PMID: 37368448
4

A New Potyvirus found in Passiflora incence in Florida.

Baker CA, et al.  Plant Dis. 2007 Feb;91(2):227. doi: 10.1094/PDIS-91-2-0227A.

PMID: 30781012
5

First Report of Capsicum chlorosis virus Infecting Waxflower (Hoya calycina Schlecter) in the United States.

Melzer MJ, et al.  Plant Dis. 2014 Apr;98(4):571. doi: 10.1094/PDIS-06-13-0588-PDN.

PMID: 30708703