Citrus chlorotic dwarf associated virus

Basic Information

Genus Citlodavirus
NCBI Assembly GCF_000898955.1
Isolate Turkey
Release date 2015/2/22
Submitter Loconsole,G., Saldarelli,P., Doddapaneni,H., Savino,V., Martelli,G.P., Saponari,M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_018151
ATCCCGGTTATTGGTTAGGTTTGAATAGGTATTCAAATTTTGATTATGAAACGTGTTGGGCACGTTTCCTCGTGCTATATAAACGTGGAATACTATGCGTATTTGTACATGGAGAAAGGATTATTTGGGGAACACACGGAGAAGGTATTGATCTGTGTACTTGTTTTTTTTTATTCAATCCAAATCATAAGCAATGTGTCATTATGCATTAAGTGTTCAAGATTTGCCCGAGAGTTTGTTCGGTTTAATGAGCATGTTGAGTGTGAGGTATTTAAAGTGTGTGGAAGAGAGGGAAATGGAGAGAAGCCTAATGGTAGGGAATCCCGTAGGAGGAGCCCTGGGTAATGCTCGTATACTTATACGGTTAATACGTAGATACTGCAGGTGTAGAGACTGGGTAAGGAAAGGTAGGGTCAATGGTGAGTACCAGGAGTGGAGGACAATATGGGACAAGCCGTGTAACGACTGTGGAGACGCTGCCGATGTGGGCCACAAAGAGAAGAAGGAGGCCCAGGTGGCCGAGAAAGGAAAAGAAGCCCAAGATTGCTGGGGCTGTATTTGTGAAGGCCCGGCCCAGGAGAAAGTCGAGCAAAGGTGTTCCTCCGGGGTGTAAGGGCCCATGTAAAACACACACGGTGGATGTGATAAAGACTATTTATCACGATGGCCGTGGATCTGGAATGATTTCAAATATTGACCGAGGTGATGAGCTAGGTCAAAGGGAAGGAAGGAAAATAAGGGTTTCACGTATGATCATACGTGGCAAGATCTGGTTGGACGTGAATAATGCATCCGTACCAGGAAGCAATTTAGCTAAAATATGGATTTTCAAGGATAGGAGACCGGGGACTGAACCGGTTGCTTTTAATGCGCTGATGGATATGTCTGATTCAGAACCACTCAGTGCATTTGTGAAGGTTGACTACAGGGACAGGTTTATTGCCCTTCACACTATGACGGTAGACCTGCACGGTGGAAAGGATTTTAGGGTTGACGAGCTTGACTTGGATGAGTTAGTTGAGATAAACAGTGATGTTTTGTTTAGTCATGAGGACGATGGGTCTGTGGCCCATACGATCCAAAATGGTATTTTTATATATTATGCTTGTAGTGATCCTAGACAGACTGTGCAAATAACTGCACAGGCTCGATTGTATTTTTATGATTCTACATCAAATTAATAAAATTTAATATTTTTTTTTAAAATAGAATGGACGGTCAAGATTTGGTGTTACAAGACTATCATAGCACGAGACGTATTGAATACCCTCTAAGTGATGAGTGGCAGCAGATAAAGCTTGCATTCCCTAGTATGAAGGAGATTAGCTGGCATAAGTTACGTGGTCAATGCATGAAAATTGACCATTGTCAGATACGGTATGATCCGCAAGTACCTGCTAATGCAGAAGGGAATGTATTGGTTGTGGTACACGATAGACGTATGGAAGCTGACAAGTCAATGCAAGCTGAATATACTTTTCCAATACGATGTGGAATAGAACTTAATTACTATTCCTGTTCGTATTTTTCGTTGAAGGACCCAGTACCATGGTGTGTATACTATAGGGTTGTGAACTCTACTGTGTTGAAGGGTTCTCATTTTTGTCAATTTAAGGCGCGCGTGAAGCTAAGCGCGGCTAAATCAAGTAGCCCAATTGGGTTCAGGGGTCCAAGTGTTAAGATTTTAAACAAGGCATTCAACGAAGACCAGGTGGATTTCATGCACGTGGGCATCCCGAAGTCAGAAAGGGTGTTATGCAGGAGTAATAGTGTTTTAACGACCCGGCCCAGATTGAATCTTGAGGCTGGGGAGAGTTGGGCCTCGAAAAGTATATTATCAGGCGAAGGTGGATCGGAGGTTGGTGATTCCGGCCCATATAGGGGTTTGGCTCAGTTAGGCCCAGACGCGATTGATCCAGGTGATAGCGCGTCTAATTTGGGTGATCCAAAATCAGTTGCGGATGAAGTCATTAGAAGACTTAACAGTTCAGTTATTGGGATGGACTTAAACAGTTCAAAATTTGCAGAGATAATTGGAGATGCAGTACTCAAGGGAAGTGTGATCAACAGTAGAGATAATCAGGCCTCAACAAGTAATGCTAATGATTATAAGAAAAAAAGCTTGGCTTAAAATTGTATAATTTGTAATTAACGGGGTACGCTTAAGCATTTGTTTGAGCCGAGGCTTTCGAGGCGAGTCACCCCGAAATATAATTTGCCAGAAAATCAATATGTTTATTATAGATAATAAAGGCACGAAGTGCCGTACAAGGATACGAAATCAAATACACGCAAACAACTAGTAGAATACATCAGTGGGGTCCATATAATGCATAAGTACATTTTGGTTCCACCAGTCCTTTATTGTGGGTGACATATAAGTTAACCAGTCCATATCTGGATTAACACATATTATGGACGGTATGCCTCCCTTAATAGTGCGATCGGGTCTATACTTAATGTTAACGGTAATGTTTTTTTGGGACCCCACTAAGGATTTCATAACCTCATGTGAGATTTTGGTGTATTGGATGTCATCAATGACGTTATACAGTGCGTGGTCGTTGTAGTCGTGGAATTTGATGGCACCCGTGAAGTAGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGTTTTGCCTGATCGGCTTGGGCCGCAGATGTAGAGGGATTTGGGCCTGTCGGGCTTGGAGTCTGGTTCCTGTGCTCGTCACACCAGAAGTGATGTTGCAAATTAATTGGGCACTCAGTCTCAAATATTGCTTTTGGACAGCAGGAATAACACAGTTCATACTGTAAAAATGGTTTACTTACACATAGGATGTTCTGCTGGGCCCACTGCTTGACGTGTTCAGGAAGGTTCGGGAATTCTGTGAAAGCAGGTATGAACGGTTCACGTAGTCTGCAGTAGTTGTCACGTGCGAACGCTGAGATCGCTGGCCATCTGAGGACGAAGTCTGATGGTCTGAGCTCTCTGACTAGGTTAAGGAAGGACCGTTCGTCGGTTGCCTCGAGGAGCACGTCCCTCCACAGTTTTTCTTGATCCTTTTGTGGGGATCGTGCTCTGGAGTTGAAGCGTCCTTCCTCCACATAGTTGCCGTCCTTCATGAGGTATTTTCTGGAGGCGGCTGGTGATTTCAAGGACTCGATACAGGGATGGAATGACCTCTCTCTGCGTACGGAGAGGAGGTCGAAGAACCGGGGGTTCTGTGTTTCGACCCGTTTCTTGCACTGGATCATGGCATGAAGGTGTGGGTCTCCGGATTCGTGGAGTTCCTCACACACGCACATGTAAGTGATTGTGAATCGTGCGAGTGTTAGTCGAAGGAAAGCTTGGAGGTGTTCCTTGGTGCATGGGCACTTGGGGTATGTAAGGAAAATATTTTTGGCTGAGAATCGGAAGCTAGAGGAAGTGGAAGCCATGTTGTACGGATTGGTGGAGGAAAGATTAGCCCCCTTATGGTAGTGGGAGTGGGAGTGCCAATTTTATATAATATTACAGGCACTCCCACTGTGACACGTGGCAGTTTAGCAGCCACAAACAGAGATATGATTGAGAGATGCTCTACGTGGAATAACCTGAGGCCGTTAGATTTGTGTTTCTCACTTTAAATAATAACCATTGGATGAGCTATCCATGCGA

Gene Information

NCBI Accession YP_006522418.1
Location 194-613
Protein Name putative V2-like protein
Coding Region ATGTGTCATTATGCATTAAGTGTTCAAGATTTGCCCGAGAGTTTGTTCGGTTTAATGAGCATGTTGAGTGTGAGGTATTTAAAGTGTGTGGAAGAGAGGGAAATGGAGAGAAGCCTAATGGTAGGGAATCCCGTAGGAGGAGCCCTGGGTAATGCTCGTATACTTATACGGTTAATACGTAGATACTGCAGGTGTAGAGACTGGGTAAGGAAAGGTAGGGTCAATGGTGAGTACCAGGAGTGGAGGACAATATGGGACAAGCCGTGTAACGACTGTGGAGACGCTGCCGATGTGGGCCACAAAGAGAAGAAGGAGGCCCAGGTGGCCGAGAAAGGAAAAGAAGCCCAAGATTGCTGGGGCTGTATTTGTGAAGGCCCGGCCCAGGAGAAAGTCGAGCAAAGGTGTTCCTCCGGGGTGTAA
Protein Sequence MCHYALSVQDLPESLFGLMSMLSVRYLKCVEEREMERSLMVGNPVGGALGNARILIRLIRRYCRCRDWVRKGRVNGEYQEWRTIWDKPCNDCGDAADVGHKEKKEAQVAEKGKEAQDCWGCICEGPAQEKVEQRCSSGV

NCBI Accession YP_006522419.1
Location 417-1181
Protein Name putative coat protein-like protein
Coding Region ATGGTGAGTACCAGGAGTGGAGGACAATATGGGACAAGCCGTGTAACGACTGTGGAGACGCTGCCGATGTGGGCCACAAAGAGAAGAAGGAGGCCCAGGTGGCCGAGAAAGGAAAAGAAGCCCAAGATTGCTGGGGCTGTATTTGTGAAGGCCCGGCCCAGGAGAAAGTCGAGCAAAGGTGTTCCTCCGGGGTGTAAGGGCCCATGTAAAACACACACGGTGGATGTGATAAAGACTATTTATCACGATGGCCGTGGATCTGGAATGATTTCAAATATTGACCGAGGTGATGAGCTAGGTCAAAGGGAAGGAAGGAAAATAAGGGTTTCACGTATGATCATACGTGGCAAGATCTGGTTGGACGTGAATAATGCATCCGTACCAGGAAGCAATTTAGCTAAAATATGGATTTTCAAGGATAGGAGACCGGGGACTGAACCGGTTGCTTTTAATGCGCTGATGGATATGTCTGATTCAGAACCACTCAGTGCATTTGTGAAGGTTGACTACAGGGACAGGTTTATTGCCCTTCACACTATGACGGTAGACCTGCACGGTGGAAAGGATTTTAGGGTTGACGAGCTTGACTTGGATGAGTTAGTTGAGATAAACAGTGATGTTTTGTTTAGTCATGAGGACGATGGGTCTGTGGCCCATACGATCCAAAATGGTATTTTTATATATTATGCTTGTAGTGATCCTAGACAGACTGTGCAAATAACTGCACAGGCTCGATTGTATTTTTATGATTCTACATCAAATTAA
Protein Sequence MVSTRSGGQYGTSRVTTVETLPMWATKRRRRPRWPRKEKKPKIAGAVFVKARPRRKSSKGVPPGCKGPCKTHTVDVIKTIYHDGRGSGMISNIDRGDELGQREGRKIRVSRMIIRGKIWLDVNNASVPGSNLAKIWIFKDRRPGTEPVAFNALMDMSDSEPLSAFVKVDYRDRFIALHTMTVDLHGGKDFRVDELDLDELVEINSDVLFSHEDDGSVAHTIQNGIFIYYACSDPRQTVQITAQARLYFYDSTSN

NCBI Accession YP_006522420.1
Location 1211-2131
Protein Name putative BL1-like movement protein
Coding Region ATGGACGGTCAAGATTTGGTGTTACAAGACTATCATAGCACGAGACGTATTGAATACCCTCTAAGTGATGAGTGGCAGCAGATAAAGCTTGCATTCCCTAGTATGAAGGAGATTAGCTGGCATAAGTTACGTGGTCAATGCATGAAAATTGACCATTGTCAGATACGGTATGATCCGCAAGTACCTGCTAATGCAGAAGGGAATGTATTGGTTGTGGTACACGATAGACGTATGGAAGCTGACAAGTCAATGCAAGCTGAATATACTTTTCCAATACGATGTGGAATAGAACTTAATTACTATTCCTGTTCGTATTTTTCGTTGAAGGACCCAGTACCATGGTGTGTATACTATAGGGTTGTGAACTCTACTGTGTTGAAGGGTTCTCATTTTTGTCAATTTAAGGCGCGCGTGAAGCTAAGCGCGGCTAAATCAAGTAGCCCAATTGGGTTCAGGGGTCCAAGTGTTAAGATTTTAAACAAGGCATTCAACGAAGACCAGGTGGATTTCATGCACGTGGGCATCCCGAAGTCAGAAAGGGTGTTATGCAGGAGTAATAGTGTTTTAACGACCCGGCCCAGATTGAATCTTGAGGCTGGGGAGAGTTGGGCCTCGAAAAGTATATTATCAGGCGAAGGTGGATCGGAGGTTGGTGATTCCGGCCCATATAGGGGTTTGGCTCAGTTAGGCCCAGACGCGATTGATCCAGGTGATAGCGCGTCTAATTTGGGTGATCCAAAATCAGTTGCGGATGAAGTCATTAGAAGACTTAACAGTTCAGTTATTGGGATGGACTTAAACAGTTCAAAATTTGCAGAGATAATTGGAGATGCAGTACTCAAGGGAAGTGTGATCAACAGTAGAGATAATCAGGCCTCAACAAGTAATGCTAATGATTATAAGAAAAAAAGCTTGGCTTAA
Protein Sequence MDGQDLVLQDYHSTRRIEYPLSDEWQQIKLAFPSMKEISWHKLRGQCMKIDHCQIRYDPQVPANAEGNVLVVVHDRRMEADKSMQAEYTFPIRCGIELNYYSCSYFSLKDPVPWCVYYRVVNSTVLKGSHFCQFKARVKLSAAKSSSPIGFRGPSVKILNKAFNEDQVDFMHVGIPKSERVLCRSNSVLTTRPRLNLEAGESWASKSILSGEGGSEVGDSGPYRGLAQLGPDAIDPGDSASNLGDPKSVADEVIRRLNSSVIGMDLNSSKFAEIIGDAVLKGSVINSRDNQASTSNANDYKKKSLA

NCBI Accession YP_006522421.1
Location 2300->2707
Protein Name putative C1:C2-like protein
Coding Region CGAGCACAGGAACCAGACTCCAAGCCCGACAGGCCCAAATCCCTCTACATCTGCGGCCCAAGCCGATCAGGCAAAACCGCCTGGGCCAGAAGTTTAGGCCTACACAACTACTTCACGGGTGCCATCAAATTCCACGACTACAACGACCACGCACTGTATAACGTCATTGATGACATCCAATACACCAAAATCTCACATGAGGTTATGAAATCCTTAGTGGGGTCCCAAAAAAACATTACCGTTAACATTAAGTATAGACCCGATCGCACTATTAAGGGAGGCATACCGTCCATAATATGTGTTAATCCAGATATGGACTGGTTAACTTATATGTCACCCACAATAAAGGACTGGTGGAACCAAAATGTACTTATGCATTATATGGACCCCACTGATGTATTCTACTAG
Protein Sequence RAQEPDSKPDRPKSLYICGPSRSGKTAWARSLGLHNYFTGAIKFHDYNDHALYNVIDDIQYTKISHEVMKSLVGSQKNITVNIKYRPDRTIKGGIPSIICVNPDMDWLTYMSPTIKDWWNQNVLMHYMDPTDVFY

NCBI Accession YP_006522422.1
Location 2611-3420
Protein Name putative RepA-like protein
Coding Region ATGGCTTCCACTTCCTCTAGCTTCCGATTCTCAGCCAAAAATATTTTCCTTACATACCCCAAGTGCCCATGCACCAAGGAACACCTCCAAGCTTTCCTTCGACTAACACTCGCACGATTCACAATCACTTACATGTGCGTGTGTGAGGAACTCCACGAATCCGGAGACCCACACCTTCATGCCATGATCCAGTGCAAGAAACGGGTCGAAACACAGAACCCCCGGTTCTTCGACCTCCTCTCCGTACGCAGAGAGAGGTCATTCCATCCCTGTATCGAGTCCTTGAAATCACCAGCCGCCTCCAGAAAATACCTCATGAAGGACGGCAACTATGTGGAGGAAGGACGCTTCAACTCCAGAGCACGATCCCCACAAAAGGATCAAGAAAAACTGTGGAGGGACGTGCTCCTCGAGGCAACCGACGAACGGTCCTTCCTTAACCTAGTCAGAGAGCTCAGACCATCAGACTTCGTCCTCAGATGGCCAGCGATCTCAGCGTTCGCACGTGACAACTACTGCAGACTACGTGAACCGTTCATACCTGCTTTCACAGAATTCCCGAACCTTCCTGAACACGTCAAGCAGTGGGCCCAGCAGAACATCCTATGTGTAAGTAAACCATTTTTACAGTATGAACTGTGTTATTCCTGCTGTCCAAAAGCAATATTTGAGACTGAGTGCCCAATTAATTTGCAACATCACTTCTGGTGTGACGAGCACAGGAACCAGACTCCAAGCCCGACAGGCCCAAATCCCTCTACATCTGCGGCCCAAGCCGATCAGGCAAAACCGCCTGGGCCAGAAGTTTAG
Protein Sequence MASTSSSFRFSAKNIFLTYPKCPCTKEHLQAFLRLTLARFTITYMCVCEELHESGDPHLHAMIQCKKRVETQNPRFFDLLSVRRERSFHPCIESLKSPAASRKYLMKDGNYVEEGRFNSRARSPQKDQEKLWRDVLLEATDERSFLNLVRELRPSDFVLRWPAISAFARDNYCRLREPFIPAFTEFPNLPEHVKQWAQQNILCVSKPFLQYELCYSCCPKAIFETECPINLQHHFWCDEHRNQTPSPTGPNPSTSAAQADQAKPPGPEV

References More References in PubMed

1

Construction of an Infectious Clone of Citrus Chlorotic Dwarf-Associated Virus and Confirmation of Its Pathogenicity.

Zhao J, et al.  Plant Dis. 2024 Nov;108(11):3393-3399. doi: 10.1094/PDIS-12-23-2575-RE. Epub 2024 Nov 6.

PMID: 39021152
2

Regulation of Nicotiana benthamiana cell death induced by citrus chlorotic dwarf-associated virus-RepA protein by WRKY 1.

Qin Y, et al.  Front Plant Sci. 2023 Apr 25;14:1164416. doi: 10.3389/fpls.2023.1164416. eCollection 2023.

PMID: 37180388
3

Identification of RNA silencing suppressor encoded by citrus chlorotic dwarf-associated virus.

Ye X, et al.  Front Microbiol. 2024 Jan 25;15:1328289. doi: 10.3389/fmicb.2024.1328289. eCollection 2024.

PMID: 38333582
4

Identification of a single-stranded DNA virus associated with citrus chlorotic dwarf disease, a new member in the family Geminiviridae.

Loconsole G, et al.  Virology. 2012 Oct 10;432(1):162-72. doi: 10.1016/j.virol.2012.06.005. Epub 2012 Jul 1.

PMID: 22749878
5

RepA Protein of Citrus Chlorotic Dwarf-Associated Virus Impairs Perinuclear Chloroplast Clustering Induced by Lemon Chloroplast Malate Dehydrogenase.

Chen Y, et al.  Mol Plant Pathol. 2025 Aug;26(8):e70133. doi: 10.1111/mpp.70133.

PMID: 40773494
6

Discovery of a novel geminivirus associated with camellia chlorotic dwarf disease.

Zhang S, et al.  Arch Virol. 2018 Jun;163(6):1709-1712. doi: 10.1007/s00705-018-3780-3. Epub 2018 Mar 2.

PMID: 29500570
7

Geminiviruses: Taxonomic Structure and Diversity in Genomic Organization.

Kulshrestha S, et al.  Recent Pat Biotechnol. 2020;14(2):86-98. doi: 10.2174/1872208313666191203100851.

PMID: 31793424
8

Updating the Quarantine Status of Prunus Infecting Viruses in Australia.

Kinoti WM, et al.  Viruses. 2020 Feb 23;12(2):246. doi: 10.3390/v12020246.

PMID: 32102210
9

Capulavirus and Grablovirus: two new genera in the family Geminiviridae.

Varsani A, et al.  Arch Virol. 2017 Jun;162(6):1819-1831. doi: 10.1007/s00705-017-3268-6. Epub 2017 Feb 17.

PMID: 28213872
10

Passion Fruit Chlorotic Mottle Virus: Molecular Characterization of a New Divergent Geminivirus in Brazil.

Fontenele RS, et al.  Viruses. 2018 Apr 2;10(4):169. doi: 10.3390/v10040169.

PMID: 29614801