Alfalfa leaf curl virus


Basic Information

Genus Capulavirus
NCBI Assembly GCF_001271015.1
Isolate France:Camargue, Le Sambuc
Release date 2015/8/20
Submitter Roumagnac,P., Granier,M., Bernardo,P., Deshoux,M., Ferdinand,R., Galzi,S., Fernandez,E., Julian,C., Abt,I., Filloux,D., Mesleard,F., Varsani,A., Blanc,S., Martin,D.P., Peterschmitt,M.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_027714
TAATATTACTGGTTTCGCTGTGGGCCCCACACGGGGCCCCCGACAAATAAAAAAGCGAATAACGCGTTGTCGGTTACTTTTGACCACTTTAAGTGCTTTTGATTGCGTGTTTGACACGTCACAATATTCTATATAAACAGCAGGATCTGAATGTTATGGAACATGTCATTGGGAAGCGTGTTTATGGAATATTGTGCTGCTTGGATATTTTGGTGGCAAAATATTGTTTTAATATTCTTATTTACCATTTTATTTTGGATAAATGGAAAGTCGTTTATACTTGCTAGAGGAATTGCCCGCAACGTACGGGAAATTACAGGGCTTTTGTACGGATCTGTTCTTAGCGGAACAGATTCGGAAGGCCTCCGAGTTAAAGATGTTCAAAGAGGCCCAAATGTACATGGTCCTCAGACAGGCCTTCAGACGATCACAGAGGAATAAGGCCCCATGGCCTTCAAAGGTGGCCCAATTCAATATGGACTTGGCACTTACTATAAGTAGGGCCAAGCAGATATCGGAGGAGGCCCAATTGTTAGTTGATTACAAAAAAAAAATTGAAGATGGTTCGCACGAGATCCGGGAGAACGTATGGATCGGCCCAGGCCCTTTCTTGGGGTCGGAAGAGGGCGAGAACGACAGTTCGCTCTCGACCAACACTACTTGGGCCGATTCGGAGGCCCAGTTATCAAGTGAAGACCCGATATGCTCCTCATAGACCTCAGACTAAGATTCATTCGCTCGCTAACACTAGAGTTGTTAGTGGGGCGAACGAGGGCTACGGATGGCATGTATCGGGAGTACCTATTGGTTCTGGGTTTGAAGATAGACATAGTGATAAGATTAAAATTAATTCTTTAAATTTTAAGATGCAGATGATGACATCAGATGCTGGGACCCAAACGACTCTTTGGCACAATGTGTATATGTTTTTAGTAAAAGATAATTCTGGTGGAGCACAAGTCCCAAAATTCAATTCAATATGTATGATGGATAATTCAAACCCGGCAACTGCTGAAATAGACCACGATTCAAAGGATCGTTTTCAGATAATTCGAAGGTGGAGATTTCAATTCAAAGGAAACTCCACGAGGAATGGAGTTGCTTATGATTGTGCAAAAAATAGACATGATTTTAGGGCTAACGTCAAATTAAATTCAATTAGTGAATTTAAGTCTGCGACTGATGGGTCATATGCAAATACCCAGAAGAACGCATACACTATGTATTTCGTACCCCAGACTTATGATATGGTCGTAGACGGTCATTGTACAATGAAATATACGTCAATAGTTTGACCGAAGATACTTACGAAATATTGTTGTGGGAAAATCATTATTTTTATGAATGAATTAAAGGCCGAAGGCCGTGAACAATTGTAAATTGTAATAAATATTGATCAATAAATATTTATCAATAAAATTTATCATTAATACAAACATGGATTACATTTAATTCACTCCATTCATACATATCACTACTAGACAGAGCAGTCTTATAAGACTGATCTGGATTACATAATACAATTGTTGGGATCCCCCCAGGCACTCTAGTTTTTTTACGGTATTTTTCATTAACCGTAAAATCTCTTTGAGATCCTAACAATTCTTTTTTACAAGGTAAAAACTGAAAAGGGATATCATCTATTACATTATAAGACGCGTGATTATCCCAAAAACTAAAATCTACACCCCCACAAAAGTAGTTATGACGCCCTAGACTTCTCGCCCACGCAGTTTTCCCAGTTTTACTGGGTCCTTCAATGATTAATGTCAGTGGGCGATCCGGTTTCTGGTCCTGCATCATCAATAACATTAATATTATTAATATTATAAGCATCGTTGATTTGATCTGCAGTAAGATCTTGTGCCCAGATCAAATCATCTATAGAAATAGACGGTTCAGTTAACTGGACCGCGAAGAGACTTACGGTGAAGATGTTCTCATCTGCCCATTGTTTAATGGACTCCGGTACGCTAGGAAAATGCGTCCATCTGGGTTGATACACAGTTGGGGGTTCAGGCCATTCTCTACTGGCCATGTACTCCAGGTTACGCAACTGGGTTGCGTACGTGTACGGTTGTTCAGTTCTACATCTGGAGAGGAATTCGGACTTGGATGTAGACTCCGTGAGGATTGTTGTCCAGATGGAATCCCTAGACTTCTTAGGACTTCTTCTTGAAGCTCTAAGTAATCCTCGTTCCTCAAATACCCCTCCCTTGGAGATGTAGTCGGCGACATCTGCATCCCTTCGGGGAATCTGGGTATTTGGGTGATAGGTTGAGAGGCCATTTGGGTCCTTGATGTCGAAGAACCTCGGATCCTTGATGTCAATCTTCTTGTCCATCTGGACAAGACAGTGGAGGTGCGGCTCTCCTGATTGGTGTTCCTCCCTGCAGACTCTTGCGTAAGTAGGATCCCAGTTCTTTAATAATTGATAGAGGTAATCGATTAAAAACATTGGGATTAAAGGGCACTGCGGGTAAGTTAAAAAAATAGACTTACCCTGAAGTCTGAAGTTTGAAGCACGTCTAGGCATGTTGACCAGAAGTCAAGGGGAATGAAAAATGCGTTTTAGAGAGGGTTTTCTCAAACTTCTTTCTCTACTATGGTTTTGCGGAGGAACGGAGGAACGGAGGATATAATATAATAATAGAGGACCGTTAGATGAATGACACGTTTCATTCCATCCTACGGTCCACGCGCCATAGCGCGTGGAATGTCGGCCGGCTTTTCAGCGAAACCATA

Gene Information

NCBI Accession YP_009162631.1
Location 151-441
Gene Name V4
Protein Name V4
Coding Region ATGTTATGGAACATGTCATTGGGAAGCGTGTTTATGGAATATTGTGCTGCTTGGATATTTTGGTGGCAAAATATTGTTTTAATATTCTTATTTACCATTTTATTTTGGATAAATGGAAAGTCGTTTATACTTGCTAGAGGAATTGCCCGCAACGTACGGGAAATTACAGGGCTTTTGTACGGATCTGTTCTTAGCGGAACAGATTCGGAAGGCCTCCGAGTTAAAGATGTTCAAAGAGGCCCAAATGTACATGGTCCTCAGACAGGCCTTCAGACGATCACAGAGGAATAA
Protein Sequence MLWNMSLGSVFMEYCAAWIFWWQNIVLIFLFTILFWINGKSFILARGIARNVREITGLLYGSVLSGTDSEGLRVKDVQRGPNVHGPQTGLQTITEE

NCBI Accession YP_009162632.1
Location 156-287
Gene Name V2
Protein Name V2
Coding Region ATGGAACATGTCATTGGGAAGCGTGTTTATGGAATATTGTGCTGCTTGGATATTTTGGTGGCAAAATATTGTTTTAATATTCTTATTTACCATTTTATTTTGGATAAATGGAAAGTCGTTTATACTTGCTAG
Protein Sequence MEHVIGKRVYGILCCLDILVAKYCFNILIYHFILDKWKVVYTC

NCBI Accession YP_009162633.1
Location 263-715
Gene Name V3
Protein Name V3
Coding Region ATGGAAAGTCGTTTATACTTGCTAGAGGAATTGCCCGCAACGTACGGGAAATTACAGGGCTTTTGTACGGATCTGTTCTTAGCGGAACAGATTCGGAAGGCCTCCGAGTTAAAGATGTTCAAAGAGGCCCAAATGTACATGGTCCTCAGACAGGCCTTCAGACGATCACAGAGGAATAAGGCCCCATGGCCTTCAAAGGTGGCCCAATTCAATATGGACTTGGCACTTACTATAAGTAGGGCCAAGCAGATATCGGAGGAGGCCCAATTGTTAGTTGATTACAAAAAAAAAATTGAAGATGGTTCGCACGAGATCCGGGAGAACGTATGGATCGGCCCAGGCCCTTTCTTGGGGTCGGAAGAGGGCGAGAACGACAGTTCGCTCTCGACCAACACTACTTGGGCCGATTCGGAGGCCCAGTTATCAAGTGAAGACCCGATATGCTCCTCATAG
Protein Sequence MESRLYLLEELPATYGKLQGFCTDLFLAEQIRKASELKMFKEAQMYMVLRQAFRRSQRNKAPWPSKVAQFNMDLALTISRAKQISEEAQLLVDYKKKIEDGSHEIRENVWIGPGPFLGSEEGENDSSLSTNTTWADSEAQLSSEDPICSS

NCBI Accession YP_009162634.1
Location 561-1295
Gene Name V1
Protein Name coat protein
Coding Region ATGGTTCGCACGAGATCCGGGAGAACGTATGGATCGGCCCAGGCCCTTTCTTGGGGTCGGAAGAGGGCGAGAACGACAGTTCGCTCTCGACCAACACTACTTGGGCCGATTCGGAGGCCCAGTTATCAAGTGAAGACCCGATATGCTCCTCATAGACCTCAGACTAAGATTCATTCGCTCGCTAACACTAGAGTTGTTAGTGGGGCGAACGAGGGCTACGGATGGCATGTATCGGGAGTACCTATTGGTTCTGGGTTTGAAGATAGACATAGTGATAAGATTAAAATTAATTCTTTAAATTTTAAGATGCAGATGATGACATCAGATGCTGGGACCCAAACGACTCTTTGGCACAATGTGTATATGTTTTTAGTAAAAGATAATTCTGGTGGAGCACAAGTCCCAAAATTCAATTCAATATGTATGATGGATAATTCAAACCCGGCAACTGCTGAAATAGACCACGATTCAAAGGATCGTTTTCAGATAATTCGAAGGTGGAGATTTCAATTCAAAGGAAACTCCACGAGGAATGGAGTTGCTTATGATTGTGCAAAAAATAGACATGATTTTAGGGCTAACGTCAAATTAAATTCAATTAGTGAATTTAAGTCTGCGACTGATGGGTCATATGCAAATACCCAGAAGAACGCATACACTATGTATTTCGTACCCCAGACTTATGATATGGTCGTAGACGGTCATTGTACAATGAAATATACGTCAATAGTTTGA
Protein Sequence MVRTRSGRTYGSAQALSWGRKRARTTVRSRPTLLGPIRRPSYQVKTRYAPHRPQTKIHSLANTRVVSGANEGYGWHVSGVPIGSGFEDRHSDKIKINSLNFKMQMMTSDAGTQTTLWHNVYMFLVKDNSGGAQVPKFNSICMMDNSNPATAEIDHDSKDRFQIIRRWRFQFKGNSTRNGVAYDCAKNRHDFRANVKLNSISEFKSATDGSYANTQKNAYTMYFVPQTYDMVVDGHCTMKYTSIV

NCBI Accession YP_009162635.2
Location 1411-1795,1929-2536
Protein Name replication associated protein
Coding Region ATGCCTAGACGTGCTTCAAACTTCAGACTTCAGGGTAAGTCTATTTTTTTAACTTACCCGCAGTGCCCTTTAATCCCAATGTTTTTAATCGATTACCTCTATCAATTATTAAAGAACTGGGATCCTACTTACGCAAGAGTCTGCAGGGAGGAACACCAATCAGGAGAGCCGCACCTCCACTGTCTTGTCCAGATGGACAAGAAGATTGACATCAAGGATCCGAGGTTCTTCGACATCAAGGACCCAAATGGCCTCTCAACCTATCACCCAAATACCCAGATTCCCCGAAGGGATGCAGATGTCGCCGACTACATCTCCAAGGGAGGGGTATTTGAGGAACGAGGATTACTTAGAGCTTCAAGAAGAAGTCCTAAGAAGTCTAGGGATTCCATCTGGACAACAATCCTCACGGAGTCTACATCCAAGTCCGAATTCCTCTCCAGATGTAGAACTGAACAACCGTACACGTACGCAACCCAGTTGCGTAACCTGGAGTACATGGCCAGTAGAGAATGGCCTGAACCCCCAACTGTGTATCAACCCAGATGGACGCATTTTCCTAGCGTACCGGAGTCCATTAAACAATGGGCAGATGAGAACATCTTCACGGACCAGAAACCGGATCGCCCACTGACATTAATCATTGAAGGACCCAGTAAAACTGGGAAAACTGCGTGGGCGAGAAGTCTAGGGCGTCATAACTACTTTTGTGGGGGTGTAGATTTTAGTTTTTGGGATAATCACGCGTCTTATAATGTAATAGATGATATCCCTTTTCAGTTTTTACCTTGTAAAAAAGAATTGTTAGGATCTCAAAGAGATTTTACGGTTAATGAAAAATACCGTAAAAAAACTAGAGTGCCTGGGGGGATCCCAACAATTGTATTATGTAATCCAGATCAGTCTTATAAGACTGCTCTGTCTAGTAGTGATATGTATGAATGGAGTGAATTAAATGTAATCCATGTTTGTATTAATGATAAATTTTATTGA
Protein Sequence MPRRASNFRLQGKSIFLTYPQCPLIPMFLIDYLYQLLKNWDPTYARVCREEHQSGEPHLHCLVQMDKKIDIKDPRFFDIKDPNGLSTYHPNTQIPRRDADVADYISKGGVFEERGLLRASRRSPKKSRDSIWTTILTESTSKSEFLSRCRTEQPYTYATQLRNLEYMASREWPEPPTVYQPRWTHFPSVPESIKQWADENIFTDQKPDRPLTLIIEGPSKTGKTAWARSLGRHNYFCGGVDFSFWDNHASYNVIDDIPFQFLPCKKELLGSQRDFTVNEKYRKKTRVPGGIPTIVLCNPDQSYKTALSSSDMYEWSELNVIHVCINDKFY

NCBI Accession YP_009162636.1
Location 1757-2536
Gene Name repA
Protein Name RepA
Coding Region ATGCCTAGACGTGCTTCAAACTTCAGACTTCAGGGTAAGTCTATTTTTTTAACTTACCCGCAGTGCCCTTTAATCCCAATGTTTTTAATCGATTACCTCTATCAATTATTAAAGAACTGGGATCCTACTTACGCAAGAGTCTGCAGGGAGGAACACCAATCAGGAGAGCCGCACCTCCACTGTCTTGTCCAGATGGACAAGAAGATTGACATCAAGGATCCGAGGTTCTTCGACATCAAGGACCCAAATGGCCTCTCAACCTATCACCCAAATACCCAGATTCCCCGAAGGGATGCAGATGTCGCCGACTACATCTCCAAGGGAGGGGTATTTGAGGAACGAGGATTACTTAGAGCTTCAAGAAGAAGTCCTAAGAAGTCTAGGGATTCCATCTGGACAACAATCCTCACGGAGTCTACATCCAAGTCCGAATTCCTCTCCAGATGTAGAACTGAACAACCGTACACGTACGCAACCCAGTTGCGTAACCTGGAGTACATGGCCAGTAGAGAATGGCCTGAACCCCCAACTGTGTATCAACCCAGATGGACGCATTTTCCTAGCGTACCGGAGTCCATTAAACAATGGGCAGATGAGAACATCTTCACCGTAAGTCTCTTCGCGGTCCAGTTAACTGAACCGTCTATTTCTATAGATGATTTGATCTGGGCACAAGATCTTACTGCAGATCAAATCAACGATGCTTATAATATTAATAATATTAATGTTATTGATGATGCAGGACCAGAAACCGGATCGCCCACTGACATTAATCATTGA
Protein Sequence MPRRASNFRLQGKSIFLTYPQCPLIPMFLIDYLYQLLKNWDPTYARVCREEHQSGEPHLHCLVQMDKKIDIKDPRFFDIKDPNGLSTYHPNTQIPRRDADVADYISKGGVFEERGLLRASRRSPKKSRDSIWTTILTESTSKSEFLSRCRTEQPYTYATQLRNLEYMASREWPEPPTVYQPRWTHFPSVPESIKQWADENIFTVSLFAVQLTEPSISIDDLIWAQDLTADQINDAYNINNINVIDDAGPETGSPTDINH

NCBI Accession YP_009162637.1
Location 1924-2289
Gene Name C3
Protein Name C3
Coding Region ATGGCCTCTCAACCTATCACCCAAATACCCAGATTCCCCGAAGGGATGCAGATGTCGCCGACTACATCTCCAAGGGAGGGGTATTTGAGGAACGAGGATTACTTAGAGCTTCAAGAAGAAGTCCTAAGAAGTCTAGGGATTCCATCTGGACAACAATCCTCACGGAGTCTACATCCAAGTCCGAATTCCTCTCCAGATGTAGAACTGAACAACCGTACACGTACGCAACCCAGTTGCGTAACCTGGAGTACATGGCCAGTAGAGAATGGCCTGAACCCCCAACTGTGTATCAACCCAGATGGACGCATTTTCCTAGCGTACCGGAGTCCATTAAACAATGGGCAGATGAGAACATCTTCACCGTAA
Protein Sequence MASQPITQIPRFPEGMQMSPTTSPREGYLRNEDYLELQEEVLRSLGIPSGQQSSRSLHPSPNSSPDVELNNRTRTQPSCVTWSTWPVENGLNPQLCINPDGRIFLAYRSPLNNGQMRTSSP

References More References in PubMed

1

Alfalfa Leaf Curl Virus: an Aphid-Transmitted Geminivirus.

Roumagnac P, et al.  J Virol. 2015 Sep;89(18):9683-8. doi: 10.1128/JVI.00453-15. Epub 2015 Jun 24.

PMID: 26109720

2

The Westward Journey of Alfalfa Leaf Curl Virus.

Davoodi Z, et al.  Viruses. 2018 Oct 4;10(10):542. doi: 10.3390/v10100542.

PMID: 30287751

3

Alfalfa leaf curl virus is efficiently acquired by its aphid vector Aphis craccivora but inefficiently transmitted.

Ryckebusch F, et al.  J Gen Virol. 2021 Feb;102(2):001516. doi: 10.1099/jgv.0.001516.

PMID: 33210990

4

Alfalfa leaf curl virus is transmitted by Aphis craccivora in a highly specific circulative manner.

Ryckebusch F, et al.  Virology. 2020 Jul;546:98-108. doi: 10.1016/j.virol.2020.04.004. Epub 2020 Apr 15.

PMID: 32452421

5

First Report of Alfalfa Leaf Curl Virus from Alfalfa in Iran.

Davoodi Z, et al.  Plant Dis. 2018 Sep 10:PDIS04180571PDN. doi: 10.1094/PDIS-04-18-0571-PDN. Online ahead of print.

PMID: 30204051

6

Genome characterization of an Argentinean isolate of alfalfa leaf curl virus.

Bejerman N, et al.  Arch Virol. 2018 Mar;163(3):799-803. doi: 10.1007/s00705-017-3673-x. Epub 2017 Dec 5.

PMID: 29209812

7

Molecular characterization and prevalence of two capulaviruses: Alfalfa leaf curl virus from France and Euphorbia caput-medusae latent virus from South Africa.

Bernardo P, et al.  Virology. 2016 Jun;493:142-53. doi: 10.1016/j.virol.2016.03.016. Epub 2016 Mar 31.

PMID: 27038709

8

Natural Occurrence of Tomato leaf curl New Delhi virus in Iranian Cucurbit Crops.

Yazdani-Khameneh S, et al.  Plant Pathol J. 2016 Jun;32(3):201-8. doi: 10.5423/PPJ.OA.10.2015.0210. Epub 2016 Jun 1.

PMID: 27298595

9

First Report of Alfalfa Leaf Curl Virus Affecting Alfalfa (Medicago sativa) in Jordan, Lebanon, Syria, and Tunisia.

Kumari SG, et al.  Plant Dis. 2018 Aug 10:PDIS03180404PDN. doi: 10.1094/PDIS-03-18-0404-PDN. Online ahead of print.

PMID: 30096020

10

High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.).

Bejerman N, et al.  Front Microbiol. 2020 Sep 11;11:553109. doi: 10.3389/fmicb.2020.553109. eCollection 2020.

PMID: 33042059