Alfalfa leaf curl virus
Basic Information
| Genus |
Capulavirus
|
| NCBI Assembly |
GCF_001271015.1 |
| Isolate |
France:Camargue, Le Sambuc |
| Release date |
2015/8/20 |
| Submitter |
Roumagnac,P., Granier,M., Bernardo,P., Deshoux,M., Ferdinand,R., Galzi,S., Fernandez,E., Julian,C., Abt,I., Filloux,D., Mesleard,F., Varsani,A., Blanc,S., Martin,D.P., Peterschmitt,M. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
TAATATTACTGGTTTCGCTGTGGGCCCCACACGGGGCCCCCGACAAATAAAAAAGCGAATAACGCGTTGTCGGTTACTTTTGACCACTTTAAGTGCTTTTGATTGCGTGTTTGACACGTCACAATATTCTATATAAACAGCAGGATCTGAATGTTATGGAACATGTCATTGGGAAGCGTGTTTATGGAATATTGTGCTGCTTGGATATTTTGGTGGCAAAATATTGTTTTAATATTCTTATTTACCATTTTATTTTGGATAAATGGAAAGTCGTTTATACTTGCTAGAGGAATTGCCCGCAACGTACGGGAAATTACAGGGCTTTTGTACGGATCTGTTCTTAGCGGAACAGATTCGGAAGGCCTCCGAGTTAAAGATGTTCAAAGAGGCCCAAATGTACATGGTCCTCAGACAGGCCTTCAGACGATCACAGAGGAATAAGGCCCCATGGCCTTCAAAGGTGGCCCAATTCAATATGGACTTGGCACTTACTATAAGTAGGGCCAAGCAGATATCGGAGGAGGCCCAATTGTTAGTTGATTACAAAAAAAAAATTGAAGATGGTTCGCACGAGATCCGGGAGAACGTATGGATCGGCCCAGGCCCTTTCTTGGGGTCGGAAGAGGGCGAGAACGACAGTTCGCTCTCGACCAACACTACTTGGGCCGATTCGGAGGCCCAGTTATCAAGTGAAGACCCGATATGCTCCTCATAGACCTCAGACTAAGATTCATTCGCTCGCTAACACTAGAGTTGTTAGTGGGGCGAACGAGGGCTACGGATGGCATGTATCGGGAGTACCTATTGGTTCTGGGTTTGAAGATAGACATAGTGATAAGATTAAAATTAATTCTTTAAATTTTAAGATGCAGATGATGACATCAGATGCTGGGACCCAAACGACTCTTTGGCACAATGTGTATATGTTTTTAGTAAAAGATAATTCTGGTGGAGCACAAGTCCCAAAATTCAATTCAATATGTATGATGGATAATTCAAACCCGGCAACTGCTGAAATAGACCACGATTCAAAGGATCGTTTTCAGATAATTCGAAGGTGGAGATTTCAATTCAAAGGAAACTCCACGAGGAATGGAGTTGCTTATGATTGTGCAAAAAATAGACATGATTTTAGGGCTAACGTCAAATTAAATTCAATTAGTGAATTTAAGTCTGCGACTGATGGGTCATATGCAAATACCCAGAAGAACGCATACACTATGTATTTCGTACCCCAGACTTATGATATGGTCGTAGACGGTCATTGTACAATGAAATATACGTCAATAGTTTGACCGAAGATACTTACGAAATATTGTTGTGGGAAAATCATTATTTTTATGAATGAATTAAAGGCCGAAGGCCGTGAACAATTGTAAATTGTAATAAATATTGATCAATAAATATTTATCAATAAAATTTATCATTAATACAAACATGGATTACATTTAATTCACTCCATTCATACATATCACTACTAGACAGAGCAGTCTTATAAGACTGATCTGGATTACATAATACAATTGTTGGGATCCCCCCAGGCACTCTAGTTTTTTTACGGTATTTTTCATTAACCGTAAAATCTCTTTGAGATCCTAACAATTCTTTTTTACAAGGTAAAAACTGAAAAGGGATATCATCTATTACATTATAAGACGCGTGATTATCCCAAAAACTAAAATCTACACCCCCACAAAAGTAGTTATGACGCCCTAGACTTCTCGCCCACGCAGTTTTCCCAGTTTTACTGGGTCCTTCAATGATTAATGTCAGTGGGCGATCCGGTTTCTGGTCCTGCATCATCAATAACATTAATATTATTAATATTATAAGCATCGTTGATTTGATCTGCAGTAAGATCTTGTGCCCAGATCAAATCATCTATAGAAATAGACGGTTCAGTTAACTGGACCGCGAAGAGACTTACGGTGAAGATGTTCTCATCTGCCCATTGTTTAATGGACTCCGGTACGCTAGGAAAATGCGTCCATCTGGGTTGATACACAGTTGGGGGTTCAGGCCATTCTCTACTGGCCATGTACTCCAGGTTACGCAACTGGGTTGCGTACGTGTACGGTTGTTCAGTTCTACATCTGGAGAGGAATTCGGACTTGGATGTAGACTCCGTGAGGATTGTTGTCCAGATGGAATCCCTAGACTTCTTAGGACTTCTTCTTGAAGCTCTAAGTAATCCTCGTTCCTCAAATACCCCTCCCTTGGAGATGTAGTCGGCGACATCTGCATCCCTTCGGGGAATCTGGGTATTTGGGTGATAGGTTGAGAGGCCATTTGGGTCCTTGATGTCGAAGAACCTCGGATCCTTGATGTCAATCTTCTTGTCCATCTGGACAAGACAGTGGAGGTGCGGCTCTCCTGATTGGTGTTCCTCCCTGCAGACTCTTGCGTAAGTAGGATCCCAGTTCTTTAATAATTGATAGAGGTAATCGATTAAAAACATTGGGATTAAAGGGCACTGCGGGTAAGTTAAAAAAATAGACTTACCCTGAAGTCTGAAGTTTGAAGCACGTCTAGGCATGTTGACCAGAAGTCAAGGGGAATGAAAAATGCGTTTTAGAGAGGGTTTTCTCAAACTTCTTTCTCTACTATGGTTTTGCGGAGGAACGGAGGAACGGAGGATATAATATAATAATAGAGGACCGTTAGATGAATGACACGTTTCATTCCATCCTACGGTCCACGCGCCATAGCGCGTGGAATGTCGGCCGGCTTTTCAGCGAAACCATA
Gene Information
|
NCBI Accession
|
YP_009162631.1
|
|
Location
|
151-441 |
|
Gene Name
|
V4 |
|
Protein Name
|
V4 |
|
Coding Region
|
ATGTTATGGAACATGTCATTGGGAAGCGTGTTTATGGAATATTGTGCTGCTTGGATATTTTGGTGGCAAAATATTGTTTTAATATTCTTATTTACCATTTTATTTTGGATAAATGGAAAGTCGTTTATACTTGCTAGAGGAATTGCCCGCAACGTACGGGAAATTACAGGGCTTTTGTACGGATCTGTTCTTAGCGGAACAGATTCGGAAGGCCTCCGAGTTAAAGATGTTCAAAGAGGCCCAAATGTACATGGTCCTCAGACAGGCCTTCAGACGATCACAGAGGAATAA |
|
Protein Sequence
|
MLWNMSLGSVFMEYCAAWIFWWQNIVLIFLFTILFWINGKSFILARGIARNVREITGLLYGSVLSGTDSEGLRVKDVQRGPNVHGPQTGLQTITEE |
|
NCBI Accession
|
YP_009162632.1
|
|
Location
|
156-287 |
|
Gene Name
|
V2 |
|
Protein Name
|
V2 |
|
Coding Region
|
ATGGAACATGTCATTGGGAAGCGTGTTTATGGAATATTGTGCTGCTTGGATATTTTGGTGGCAAAATATTGTTTTAATATTCTTATTTACCATTTTATTTTGGATAAATGGAAAGTCGTTTATACTTGCTAG |
|
Protein Sequence
|
MEHVIGKRVYGILCCLDILVAKYCFNILIYHFILDKWKVVYTC |
|
NCBI Accession
|
YP_009162633.1
|
|
Location
|
263-715 |
|
Gene Name
|
V3 |
|
Protein Name
|
V3 |
|
Coding Region
|
ATGGAAAGTCGTTTATACTTGCTAGAGGAATTGCCCGCAACGTACGGGAAATTACAGGGCTTTTGTACGGATCTGTTCTTAGCGGAACAGATTCGGAAGGCCTCCGAGTTAAAGATGTTCAAAGAGGCCCAAATGTACATGGTCCTCAGACAGGCCTTCAGACGATCACAGAGGAATAAGGCCCCATGGCCTTCAAAGGTGGCCCAATTCAATATGGACTTGGCACTTACTATAAGTAGGGCCAAGCAGATATCGGAGGAGGCCCAATTGTTAGTTGATTACAAAAAAAAAATTGAAGATGGTTCGCACGAGATCCGGGAGAACGTATGGATCGGCCCAGGCCCTTTCTTGGGGTCGGAAGAGGGCGAGAACGACAGTTCGCTCTCGACCAACACTACTTGGGCCGATTCGGAGGCCCAGTTATCAAGTGAAGACCCGATATGCTCCTCATAG |
|
Protein Sequence
|
MESRLYLLEELPATYGKLQGFCTDLFLAEQIRKASELKMFKEAQMYMVLRQAFRRSQRNKAPWPSKVAQFNMDLALTISRAKQISEEAQLLVDYKKKIEDGSHEIRENVWIGPGPFLGSEEGENDSSLSTNTTWADSEAQLSSEDPICSS |
|
NCBI Accession
|
YP_009162634.1
|
|
Location
|
561-1295 |
|
Gene Name
|
V1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGGTTCGCACGAGATCCGGGAGAACGTATGGATCGGCCCAGGCCCTTTCTTGGGGTCGGAAGAGGGCGAGAACGACAGTTCGCTCTCGACCAACACTACTTGGGCCGATTCGGAGGCCCAGTTATCAAGTGAAGACCCGATATGCTCCTCATAGACCTCAGACTAAGATTCATTCGCTCGCTAACACTAGAGTTGTTAGTGGGGCGAACGAGGGCTACGGATGGCATGTATCGGGAGTACCTATTGGTTCTGGGTTTGAAGATAGACATAGTGATAAGATTAAAATTAATTCTTTAAATTTTAAGATGCAGATGATGACATCAGATGCTGGGACCCAAACGACTCTTTGGCACAATGTGTATATGTTTTTAGTAAAAGATAATTCTGGTGGAGCACAAGTCCCAAAATTCAATTCAATATGTATGATGGATAATTCAAACCCGGCAACTGCTGAAATAGACCACGATTCAAAGGATCGTTTTCAGATAATTCGAAGGTGGAGATTTCAATTCAAAGGAAACTCCACGAGGAATGGAGTTGCTTATGATTGTGCAAAAAATAGACATGATTTTAGGGCTAACGTCAAATTAAATTCAATTAGTGAATTTAAGTCTGCGACTGATGGGTCATATGCAAATACCCAGAAGAACGCATACACTATGTATTTCGTACCCCAGACTTATGATATGGTCGTAGACGGTCATTGTACAATGAAATATACGTCAATAGTTTGA |
|
Protein Sequence
|
MVRTRSGRTYGSAQALSWGRKRARTTVRSRPTLLGPIRRPSYQVKTRYAPHRPQTKIHSLANTRVVSGANEGYGWHVSGVPIGSGFEDRHSDKIKINSLNFKMQMMTSDAGTQTTLWHNVYMFLVKDNSGGAQVPKFNSICMMDNSNPATAEIDHDSKDRFQIIRRWRFQFKGNSTRNGVAYDCAKNRHDFRANVKLNSISEFKSATDGSYANTQKNAYTMYFVPQTYDMVVDGHCTMKYTSIV |
|
NCBI Accession
|
YP_009162635.2
|
|
Location
|
1411-1795,1929-2536 |
|
Protein Name
|
replication associated protein |
|
Coding Region
|
ATGCCTAGACGTGCTTCAAACTTCAGACTTCAGGGTAAGTCTATTTTTTTAACTTACCCGCAGTGCCCTTTAATCCCAATGTTTTTAATCGATTACCTCTATCAATTATTAAAGAACTGGGATCCTACTTACGCAAGAGTCTGCAGGGAGGAACACCAATCAGGAGAGCCGCACCTCCACTGTCTTGTCCAGATGGACAAGAAGATTGACATCAAGGATCCGAGGTTCTTCGACATCAAGGACCCAAATGGCCTCTCAACCTATCACCCAAATACCCAGATTCCCCGAAGGGATGCAGATGTCGCCGACTACATCTCCAAGGGAGGGGTATTTGAGGAACGAGGATTACTTAGAGCTTCAAGAAGAAGTCCTAAGAAGTCTAGGGATTCCATCTGGACAACAATCCTCACGGAGTCTACATCCAAGTCCGAATTCCTCTCCAGATGTAGAACTGAACAACCGTACACGTACGCAACCCAGTTGCGTAACCTGGAGTACATGGCCAGTAGAGAATGGCCTGAACCCCCAACTGTGTATCAACCCAGATGGACGCATTTTCCTAGCGTACCGGAGTCCATTAAACAATGGGCAGATGAGAACATCTTCACGGACCAGAAACCGGATCGCCCACTGACATTAATCATTGAAGGACCCAGTAAAACTGGGAAAACTGCGTGGGCGAGAAGTCTAGGGCGTCATAACTACTTTTGTGGGGGTGTAGATTTTAGTTTTTGGGATAATCACGCGTCTTATAATGTAATAGATGATATCCCTTTTCAGTTTTTACCTTGTAAAAAAGAATTGTTAGGATCTCAAAGAGATTTTACGGTTAATGAAAAATACCGTAAAAAAACTAGAGTGCCTGGGGGGATCCCAACAATTGTATTATGTAATCCAGATCAGTCTTATAAGACTGCTCTGTCTAGTAGTGATATGTATGAATGGAGTGAATTAAATGTAATCCATGTTTGTATTAATGATAAATTTTATTGA |
|
Protein Sequence
|
MPRRASNFRLQGKSIFLTYPQCPLIPMFLIDYLYQLLKNWDPTYARVCREEHQSGEPHLHCLVQMDKKIDIKDPRFFDIKDPNGLSTYHPNTQIPRRDADVADYISKGGVFEERGLLRASRRSPKKSRDSIWTTILTESTSKSEFLSRCRTEQPYTYATQLRNLEYMASREWPEPPTVYQPRWTHFPSVPESIKQWADENIFTDQKPDRPLTLIIEGPSKTGKTAWARSLGRHNYFCGGVDFSFWDNHASYNVIDDIPFQFLPCKKELLGSQRDFTVNEKYRKKTRVPGGIPTIVLCNPDQSYKTALSSSDMYEWSELNVIHVCINDKFY |
|
NCBI Accession
|
YP_009162636.1
|
|
Location
|
1757-2536 |
|
Gene Name
|
repA |
|
Protein Name
|
RepA |
|
Coding Region
|
ATGCCTAGACGTGCTTCAAACTTCAGACTTCAGGGTAAGTCTATTTTTTTAACTTACCCGCAGTGCCCTTTAATCCCAATGTTTTTAATCGATTACCTCTATCAATTATTAAAGAACTGGGATCCTACTTACGCAAGAGTCTGCAGGGAGGAACACCAATCAGGAGAGCCGCACCTCCACTGTCTTGTCCAGATGGACAAGAAGATTGACATCAAGGATCCGAGGTTCTTCGACATCAAGGACCCAAATGGCCTCTCAACCTATCACCCAAATACCCAGATTCCCCGAAGGGATGCAGATGTCGCCGACTACATCTCCAAGGGAGGGGTATTTGAGGAACGAGGATTACTTAGAGCTTCAAGAAGAAGTCCTAAGAAGTCTAGGGATTCCATCTGGACAACAATCCTCACGGAGTCTACATCCAAGTCCGAATTCCTCTCCAGATGTAGAACTGAACAACCGTACACGTACGCAACCCAGTTGCGTAACCTGGAGTACATGGCCAGTAGAGAATGGCCTGAACCCCCAACTGTGTATCAACCCAGATGGACGCATTTTCCTAGCGTACCGGAGTCCATTAAACAATGGGCAGATGAGAACATCTTCACCGTAAGTCTCTTCGCGGTCCAGTTAACTGAACCGTCTATTTCTATAGATGATTTGATCTGGGCACAAGATCTTACTGCAGATCAAATCAACGATGCTTATAATATTAATAATATTAATGTTATTGATGATGCAGGACCAGAAACCGGATCGCCCACTGACATTAATCATTGA |
|
Protein Sequence
|
MPRRASNFRLQGKSIFLTYPQCPLIPMFLIDYLYQLLKNWDPTYARVCREEHQSGEPHLHCLVQMDKKIDIKDPRFFDIKDPNGLSTYHPNTQIPRRDADVADYISKGGVFEERGLLRASRRSPKKSRDSIWTTILTESTSKSEFLSRCRTEQPYTYATQLRNLEYMASREWPEPPTVYQPRWTHFPSVPESIKQWADENIFTVSLFAVQLTEPSISIDDLIWAQDLTADQINDAYNINNINVIDDAGPETGSPTDINH |
|
NCBI Accession
|
YP_009162637.1
|
|
Location
|
1924-2289 |
|
Gene Name
|
C3 |
|
Protein Name
|
C3 |
|
Coding Region
|
ATGGCCTCTCAACCTATCACCCAAATACCCAGATTCCCCGAAGGGATGCAGATGTCGCCGACTACATCTCCAAGGGAGGGGTATTTGAGGAACGAGGATTACTTAGAGCTTCAAGAAGAAGTCCTAAGAAGTCTAGGGATTCCATCTGGACAACAATCCTCACGGAGTCTACATCCAAGTCCGAATTCCTCTCCAGATGTAGAACTGAACAACCGTACACGTACGCAACCCAGTTGCGTAACCTGGAGTACATGGCCAGTAGAGAATGGCCTGAACCCCCAACTGTGTATCAACCCAGATGGACGCATTTTCCTAGCGTACCGGAGTCCATTAAACAATGGGCAGATGAGAACATCTTCACCGTAA |
|
Protein Sequence
|
MASQPITQIPRFPEGMQMSPTTSPREGYLRNEDYLELQEEVLRSLGIPSGQQSSRSLHPSPNSSPDVELNNRTRTQPSCVTWSTWPVENGLNPQLCINPDGRIFLAYRSPLNNGQMRTSSP |