Alfalfa leaf curl virus
Basic Information
| Genus | Capulavirus |
|---|---|
| NCBI Assembly | GCF_001271015.1 |
| Isolate | France:Camargue, Le Sambuc |
| Release date | 2015/8/20 |
| Submitter | Roumagnac,P., Granier,M., Bernardo,P., Deshoux,M., Ferdinand,R., Galzi,S., Fernandez,E., Julian,C., Abt,I., Filloux,D., Mesleard,F., Varsani,A., Blanc,S., Martin,D.P., Peterschmitt,M. |
| Host | |
| Vector | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_027714
Gene Information
| NCBI Accession | YP_009162631.1 |
|---|---|
| Location | 151-441 |
| Gene Name | V4 |
| Protein Name | V4 |
| Coding Region | ATGTTATGGAACATGTCATTGGGAAGCGTGTTTATGGAATATTGTGCTGCTTGGATATTTTGGTGGCAAAATATTGTTTTAATATTCTTATTTACCATTTTATTTTGGATAAATGGAAAGTCGTTTATACTTGCTAGAGGAATTGCCCGCAACGTACGGGAAATTACAGGGCTTTTGTACGGATCTGTTCTTAGCGGAACAGATTCGGAAGGCCTCCGAGTTAAAGATGTTCAAAGAGGCCCAAATGTACATGGTCCTCAGACAGGCCTTCAGACGATCACAGAGGAATAA |
| Protein Sequence | MLWNMSLGSVFMEYCAAWIFWWQNIVLIFLFTILFWINGKSFILARGIARNVREITGLLYGSVLSGTDSEGLRVKDVQRGPNVHGPQTGLQTITEE |
| NCBI Accession | YP_009162632.1 |
|---|---|
| Location | 156-287 |
| Gene Name | V2 |
| Protein Name | V2 |
| Coding Region | ATGGAACATGTCATTGGGAAGCGTGTTTATGGAATATTGTGCTGCTTGGATATTTTGGTGGCAAAATATTGTTTTAATATTCTTATTTACCATTTTATTTTGGATAAATGGAAAGTCGTTTATACTTGCTAG |
| Protein Sequence | MEHVIGKRVYGILCCLDILVAKYCFNILIYHFILDKWKVVYTC |
| NCBI Accession | YP_009162633.1 |
|---|---|
| Location | 263-715 |
| Gene Name | V3 |
| Protein Name | V3 |
| Coding Region | ATGGAAAGTCGTTTATACTTGCTAGAGGAATTGCCCGCAACGTACGGGAAATTACAGGGCTTTTGTACGGATCTGTTCTTAGCGGAACAGATTCGGAAGGCCTCCGAGTTAAAGATGTTCAAAGAGGCCCAAATGTACATGGTCCTCAGACAGGCCTTCAGACGATCACAGAGGAATAAGGCCCCATGGCCTTCAAAGGTGGCCCAATTCAATATGGACTTGGCACTTACTATAAGTAGGGCCAAGCAGATATCGGAGGAGGCCCAATTGTTAGTTGATTACAAAAAAAAAATTGAAGATGGTTCGCACGAGATCCGGGAGAACGTATGGATCGGCCCAGGCCCTTTCTTGGGGTCGGAAGAGGGCGAGAACGACAGTTCGCTCTCGACCAACACTACTTGGGCCGATTCGGAGGCCCAGTTATCAAGTGAAGACCCGATATGCTCCTCATAG |
| Protein Sequence | MESRLYLLEELPATYGKLQGFCTDLFLAEQIRKASELKMFKEAQMYMVLRQAFRRSQRNKAPWPSKVAQFNMDLALTISRAKQISEEAQLLVDYKKKIEDGSHEIRENVWIGPGPFLGSEEGENDSSLSTNTTWADSEAQLSSEDPICSS |
| NCBI Accession | YP_009162634.1 |
|---|---|
| Location | 561-1295 |
| Gene Name | V1 |
| Protein Name | coat protein |
| Coding Region | ATGGTTCGCACGAGATCCGGGAGAACGTATGGATCGGCCCAGGCCCTTTCTTGGGGTCGGAAGAGGGCGAGAACGACAGTTCGCTCTCGACCAACACTACTTGGGCCGATTCGGAGGCCCAGTTATCAAGTGAAGACCCGATATGCTCCTCATAGACCTCAGACTAAGATTCATTCGCTCGCTAACACTAGAGTTGTTAGTGGGGCGAACGAGGGCTACGGATGGCATGTATCGGGAGTACCTATTGGTTCTGGGTTTGAAGATAGACATAGTGATAAGATTAAAATTAATTCTTTAAATTTTAAGATGCAGATGATGACATCAGATGCTGGGACCCAAACGACTCTTTGGCACAATGTGTATATGTTTTTAGTAAAAGATAATTCTGGTGGAGCACAAGTCCCAAAATTCAATTCAATATGTATGATGGATAATTCAAACCCGGCAACTGCTGAAATAGACCACGATTCAAAGGATCGTTTTCAGATAATTCGAAGGTGGAGATTTCAATTCAAAGGAAACTCCACGAGGAATGGAGTTGCTTATGATTGTGCAAAAAATAGACATGATTTTAGGGCTAACGTCAAATTAAATTCAATTAGTGAATTTAAGTCTGCGACTGATGGGTCATATGCAAATACCCAGAAGAACGCATACACTATGTATTTCGTACCCCAGACTTATGATATGGTCGTAGACGGTCATTGTACAATGAAATATACGTCAATAGTTTGA |
| Protein Sequence | MVRTRSGRTYGSAQALSWGRKRARTTVRSRPTLLGPIRRPSYQVKTRYAPHRPQTKIHSLANTRVVSGANEGYGWHVSGVPIGSGFEDRHSDKIKINSLNFKMQMMTSDAGTQTTLWHNVYMFLVKDNSGGAQVPKFNSICMMDNSNPATAEIDHDSKDRFQIIRRWRFQFKGNSTRNGVAYDCAKNRHDFRANVKLNSISEFKSATDGSYANTQKNAYTMYFVPQTYDMVVDGHCTMKYTSIV |
| NCBI Accession | YP_009162635.2 |
|---|---|
| Location | 1411-1795,1929-2536 |
| Protein Name | replication associated protein |
| Coding Region | ATGCCTAGACGTGCTTCAAACTTCAGACTTCAGGGTAAGTCTATTTTTTTAACTTACCCGCAGTGCCCTTTAATCCCAATGTTTTTAATCGATTACCTCTATCAATTATTAAAGAACTGGGATCCTACTTACGCAAGAGTCTGCAGGGAGGAACACCAATCAGGAGAGCCGCACCTCCACTGTCTTGTCCAGATGGACAAGAAGATTGACATCAAGGATCCGAGGTTCTTCGACATCAAGGACCCAAATGGCCTCTCAACCTATCACCCAAATACCCAGATTCCCCGAAGGGATGCAGATGTCGCCGACTACATCTCCAAGGGAGGGGTATTTGAGGAACGAGGATTACTTAGAGCTTCAAGAAGAAGTCCTAAGAAGTCTAGGGATTCCATCTGGACAACAATCCTCACGGAGTCTACATCCAAGTCCGAATTCCTCTCCAGATGTAGAACTGAACAACCGTACACGTACGCAACCCAGTTGCGTAACCTGGAGTACATGGCCAGTAGAGAATGGCCTGAACCCCCAACTGTGTATCAACCCAGATGGACGCATTTTCCTAGCGTACCGGAGTCCATTAAACAATGGGCAGATGAGAACATCTTCACGGACCAGAAACCGGATCGCCCACTGACATTAATCATTGAAGGACCCAGTAAAACTGGGAAAACTGCGTGGGCGAGAAGTCTAGGGCGTCATAACTACTTTTGTGGGGGTGTAGATTTTAGTTTTTGGGATAATCACGCGTCTTATAATGTAATAGATGATATCCCTTTTCAGTTTTTACCTTGTAAAAAAGAATTGTTAGGATCTCAAAGAGATTTTACGGTTAATGAAAAATACCGTAAAAAAACTAGAGTGCCTGGGGGGATCCCAACAATTGTATTATGTAATCCAGATCAGTCTTATAAGACTGCTCTGTCTAGTAGTGATATGTATGAATGGAGTGAATTAAATGTAATCCATGTTTGTATTAATGATAAATTTTATTGA |
| Protein Sequence | MPRRASNFRLQGKSIFLTYPQCPLIPMFLIDYLYQLLKNWDPTYARVCREEHQSGEPHLHCLVQMDKKIDIKDPRFFDIKDPNGLSTYHPNTQIPRRDADVADYISKGGVFEERGLLRASRRSPKKSRDSIWTTILTESTSKSEFLSRCRTEQPYTYATQLRNLEYMASREWPEPPTVYQPRWTHFPSVPESIKQWADENIFTDQKPDRPLTLIIEGPSKTGKTAWARSLGRHNYFCGGVDFSFWDNHASYNVIDDIPFQFLPCKKELLGSQRDFTVNEKYRKKTRVPGGIPTIVLCNPDQSYKTALSSSDMYEWSELNVIHVCINDKFY |
| NCBI Accession | YP_009162636.1 |
|---|---|
| Location | 1757-2536 |
| Gene Name | repA |
| Protein Name | RepA |
| Coding Region | ATGCCTAGACGTGCTTCAAACTTCAGACTTCAGGGTAAGTCTATTTTTTTAACTTACCCGCAGTGCCCTTTAATCCCAATGTTTTTAATCGATTACCTCTATCAATTATTAAAGAACTGGGATCCTACTTACGCAAGAGTCTGCAGGGAGGAACACCAATCAGGAGAGCCGCACCTCCACTGTCTTGTCCAGATGGACAAGAAGATTGACATCAAGGATCCGAGGTTCTTCGACATCAAGGACCCAAATGGCCTCTCAACCTATCACCCAAATACCCAGATTCCCCGAAGGGATGCAGATGTCGCCGACTACATCTCCAAGGGAGGGGTATTTGAGGAACGAGGATTACTTAGAGCTTCAAGAAGAAGTCCTAAGAAGTCTAGGGATTCCATCTGGACAACAATCCTCACGGAGTCTACATCCAAGTCCGAATTCCTCTCCAGATGTAGAACTGAACAACCGTACACGTACGCAACCCAGTTGCGTAACCTGGAGTACATGGCCAGTAGAGAATGGCCTGAACCCCCAACTGTGTATCAACCCAGATGGACGCATTTTCCTAGCGTACCGGAGTCCATTAAACAATGGGCAGATGAGAACATCTTCACCGTAAGTCTCTTCGCGGTCCAGTTAACTGAACCGTCTATTTCTATAGATGATTTGATCTGGGCACAAGATCTTACTGCAGATCAAATCAACGATGCTTATAATATTAATAATATTAATGTTATTGATGATGCAGGACCAGAAACCGGATCGCCCACTGACATTAATCATTGA |
| Protein Sequence | MPRRASNFRLQGKSIFLTYPQCPLIPMFLIDYLYQLLKNWDPTYARVCREEHQSGEPHLHCLVQMDKKIDIKDPRFFDIKDPNGLSTYHPNTQIPRRDADVADYISKGGVFEERGLLRASRRSPKKSRDSIWTTILTESTSKSEFLSRCRTEQPYTYATQLRNLEYMASREWPEPPTVYQPRWTHFPSVPESIKQWADENIFTVSLFAVQLTEPSISIDDLIWAQDLTADQINDAYNINNINVIDDAGPETGSPTDINH |
| NCBI Accession | YP_009162637.1 |
|---|---|
| Location | 1924-2289 |
| Gene Name | C3 |
| Protein Name | C3 |
| Coding Region | ATGGCCTCTCAACCTATCACCCAAATACCCAGATTCCCCGAAGGGATGCAGATGTCGCCGACTACATCTCCAAGGGAGGGGTATTTGAGGAACGAGGATTACTTAGAGCTTCAAGAAGAAGTCCTAAGAAGTCTAGGGATTCCATCTGGACAACAATCCTCACGGAGTCTACATCCAAGTCCGAATTCCTCTCCAGATGTAGAACTGAACAACCGTACACGTACGCAACCCAGTTGCGTAACCTGGAGTACATGGCCAGTAGAGAATGGCCTGAACCCCCAACTGTGTATCAACCCAGATGGACGCATTTTCCTAGCGTACCGGAGTCCATTAAACAATGGGCAGATGAGAACATCTTCACCGTAA |
| Protein Sequence | MASQPITQIPRFPEGMQMSPTTSPREGYLRNEDYLELQEEVLRSLGIPSGQQSSRSLHPSPNSSPDVELNNRTRTQPSCVTWSTWPVENGLNPQLCINPDGRIFLAYRSPLNNGQMRTSSP |
References More References in PubMed
| 1 |
Alfalfa Leaf Curl Virus: an Aphid-Transmitted Geminivirus. Roumagnac P, et al. J Virol. 2015 Sep;89(18):9683-8. doi: 10.1128/JVI.00453-15. Epub 2015 Jun 24. PMID: 26109720 |
|---|---|
| 2 |
The Westward Journey of Alfalfa Leaf Curl Virus. Davoodi Z, et al. Viruses. 2018 Oct 4;10(10):542. doi: 10.3390/v10100542. PMID: 30287751 |
| 3 |
Ryckebusch F, et al. J Gen Virol. 2021 Feb;102(2):001516. doi: 10.1099/jgv.0.001516. PMID: 33210990 |
| 4 |
Alfalfa leaf curl virus is transmitted by Aphis craccivora in a highly specific circulative manner. Ryckebusch F, et al. Virology. 2020 Jul;546:98-108. doi: 10.1016/j.virol.2020.04.004. Epub 2020 Apr 15. PMID: 32452421 |
| 5 |
Bernardo P, et al. Virology. 2016 Jun;493:142-53. doi: 10.1016/j.virol.2016.03.016. Epub 2016 Mar 31. PMID: 27038709 |
| 6 |
Natural Occurrence of Tomato leaf curl New Delhi virus in Iranian Cucurbit Crops. Yazdani-Khameneh S, et al. Plant Pathol J. 2016 Jun;32(3):201-8. doi: 10.5423/PPJ.OA.10.2015.0210. Epub 2016 Jun 1. PMID: 27298595 |
| 7 |
Genome characterization of an Argentinean isolate of alfalfa leaf curl virus. Bejerman N, et al. Arch Virol. 2018 Mar;163(3):799-803. doi: 10.1007/s00705-017-3673-x. Epub 2017 Dec 5. PMID: 29209812 |
| 8 |
High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.). Bejerman N, et al. Front Microbiol. 2020 Sep 11;11:553109. doi: 10.3389/fmicb.2020.553109. eCollection 2020. PMID: 33042059 |
| 9 |
Capulavirus and Grablovirus: two new genera in the family Geminiviridae. Varsani A, et al. Arch Virol. 2017 Jun;162(6):1819-1831. doi: 10.1007/s00705-017-3268-6. Epub 2017 Feb 17. PMID: 28213872 |
| 10 |
Guo Z, et al. Front Microbiol. 2022 Jan 13;12:771361. doi: 10.3389/fmicb.2021.771361. eCollection 2021. PMID: 35095791 |