Wissadula golden mosaic virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000880135.1
Isolate Jamaica: St. Thomas parish
Release date 2015/2/22
Submitter Collins,A.M., Roye,M.E.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_010948
ACCGGATGGCCGCGTGCCCCCCCCCTTTTGCCGTACTATCACGCGCGCTCCCCTTTTCCTCACTCGCGCTCTCGTCCAATCATATTGCGTCTGCCGCGCCTAATTATTTTGAACAACTTGGGCCCTAAGTTGTTGAATGGTCTATAAATGAAAAGCTGATTGGCCCACGTACTTTAACTCAAAATGTCTAAGCGCGATGGCTCCTGGCGCTCGATCGCGGGAACCGCCAAGGTTAGGCGCATTTTGAATTTCTCCCCTCGTGGAGGTGGTGGTTTAAAACCGACCAGGGCCCAGGAATGGGTTAACAGGCCTATGTACAGGAAGCCCAAGATATACCGGACGCTGAGAACCCCCGACATCCCAAGAGGATGTGAAGGCCCATGCAAGGTGCAGTCCTATGAACAGCGCCAGGATATCTCTCACGTGGGTAAGGTCATGTGTATATCCGATGTCACACGTGGTAACGGCATTACCCACCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTTTAGGTAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCATACGAACAGTGTTATGTTCTGGTTGGTCAGGGACCGTCGACCGTATGGCACGCCTATGGATTTCGGCCAGGTGTTCAACATGTTCGACAACGAGCCCAGCACTGCCACGGTTAAGAACGATCTCCGGGATCGTTACCAGGTTATGCACCGATTCTATGGGAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCAGGCTATTGTCAGGCGGTTCTGGAAGGTCAATAACCATGTGGTCTACAACCACCAGGAGGCTGGCAAATACGAGAACCACACGGAGAACGCTCTGTTATTGTATATGGCATGTACACATGCCTTTAATCCTGTGTATGCAACTCTGAAGATTCGAATCTATTTTTATGATTCGGTCATGAATTAATAAATTTTAAAATTTATTGAATGATTCTCCAGTACATGACTCACATACGATCTGGCTGTTGCAAAACGAACAGCTCTAATTACATTGTTAATGGAAATAACGCCTAACTGATCTAAGTACATGTTGACTAAGTGCATAAACCTAAGTAAATAAGTTGACCCAGAAGCTGTCATCGATGTCGTCCAGACTTGGAAGTTCAGGTATGCTTTGTGGAGATGCAACGCTCTCCTCAGGTTGTGGTTGAACCGTATCTGGATGTGGTATACCCTTGTTCTGGTGTATAGCGGGTCCTCTACTCTGTATATCTTGAAATACAGGGGATTTTCGATCTCCCAGATATACACGCCATTCCCCGCCTGAGGTGCAGTGATGAGTTCCCCGGTGCGTGAATCCATGTCCCGTGCAGCCTATGTGGAAGTAGATGGAGCACCCGCACTCTATATCAATGCGTCTCCTCCTGATGGCCCTCCTCTTGGCCTGCCTGTGTGCCTTCTTGATAGAGGGGGGCTGTGAGGGTGATGAAGATCGCATTCTTGAGAGTCCAGTTCCTGAGGGATGCATTTTCCTCCTTGTCCAGGAACTCTTTATAGCTGGCACCCTCACCAGGATTGCATAGCACGATTGCTGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTATTTGCAATTGGACTGCCAGTCTTTTTGGGCCCCCAGCAACTCTTTCCAGTGCTTTAGTTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCATTTCGTTTGAGAAGACCCGGGAATTGAAGTCTAAGTGTCCACTCAGGTAGTTATGTGGGCCTAACGCTCGAGCCCACATTGTCTTCCCTGTCCTCGAATCACCTTCGACTATGAGACTTACTGGTCTCTGTGGCCGCGCAGCGGAACCTCTTCCAAAATATTCATCTGCCCATTCAATCATCTCGTCCGGAACGTTAGTGAAAGAGGAGAGTGGAAACGGAGGAGCCCAAGGTTCCGGAGCCTTTGCGAATATTTTGGTAGCGTTATTAGTCAGGTTGTGATGTTGAAGGAAGAAATGTTGTGGTTGTTCTTCCTTTATTATTTGCAGAGCAGCCTCTGCTGAGCCTGCATTTAACGCCTTGGCATATGTATCGTTAACAGATTGCTGGCCTCCTCTAGCAGATCTGCCGTCGATCTGGAACTCTCCCCATTCCAGTGTATCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCGGGTTGAGGAAACCAGATCGAAGAATCTGTAATTCGTGCACTGGTACTTGCCCTCGAACTGGATGAGGACGTGGAGATGAGGCTCCCCATTTTCATGAAGTTCTCTGCAGATCTTGATGAACTTCTTGTTAACTGGAGTTGTTAGTTGTTGTAATTGGGAAAGTGTCTCCTCTTTGGTAAGAGAGCATTGGGGATATGTGATGAAATAATTTTTGGCTGAGACTTTAAAACGTTTAGCTGATGGCATTTTTGTAAAAAAGAGGTGTACCCCAGATGAGTTACCCCGATTGATCTCTCCAACTTCTGTGCTATGTATTGGGGTATGGGGTATTATATATACTAGAACCCTCAATAGGACTTTGGATCTCGTTCACACACGTGGCGGCCATCCGATATAATATT

Gene Information

NCBI Accession YP_001974399.1
Location 184-939
Gene Name CP
Protein Name coat protein
Coding Region ATGTCTAAGCGCGATGGCTCCTGGCGCTCGATCGCGGGAACCGCCAAGGTTAGGCGCATTTTGAATTTCTCCCCTCGTGGAGGTGGTGGTTTAAAACCGACCAGGGCCCAGGAATGGGTTAACAGGCCTATGTACAGGAAGCCCAAGATATACCGGACGCTGAGAACCCCCGACATCCCAAGAGGATGTGAAGGCCCATGCAAGGTGCAGTCCTATGAACAGCGCCAGGATATCTCTCACGTGGGTAAGGTCATGTGTATATCCGATGTCACACGTGGTAACGGCATTACCCACCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTTTAGGTAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCATACGAACAGTGTTATGTTCTGGTTGGTCAGGGACCGTCGACCGTATGGCACGCCTATGGATTTCGGCCAGGTGTTCAACATGTTCGACAACGAGCCCAGCACTGCCACGGTTAAGAACGATCTCCGGGATCGTTACCAGGTTATGCACCGATTCTATGGGAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCAGGCTATTGTCAGGCGGTTCTGGAAGGTCAATAACCATGTGGTCTACAACCACCAGGAGGCTGGCAAATACGAGAACCACACGGAGAACGCTCTGTTATTGTATATGGCATGTACACATGCCTTTAATCCTGTGTATGCAACTCTGAAGATTCGAATCTATTTTTATGATTCGGTCATGAATTAA
Protein Sequence MSKRDGSWRSIAGTAKVRRILNFSPRGGGGLKPTRAQEWVNRPMYRKPKIYRTLRTPDIPRGCEGPCKVQSYEQRQDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHRFYGKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHAFNPVYATLKIRIYFYDSVMN

NCBI Accession YP_001974400.1
Location 936-1334
Protein Name REn
Coding Region ATGGATTCACGCACCGGGGAACTCATCACTGCACCTCAGGCGGGGAATGGCGTGTATATCTGGGAGATCGAAAATCCCCTGTATTTCAAGATATACAGAGTAGAGGACCCGCTATACACCAGAACAAGGGTATACCACATCCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCATACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTCAACTTATTTACTTAGGTTTATGCACTTAGTCAACATGTACTTAGATCAGTTAGGCGTTATTTCCATTAACAATGTAATTAGAGCTGTTCGTTTTGCAACAGCCAGATCGTATGTGAGTCATGTACTGGAGAATCATTCAATAAATTTTAAAATTTATTAA
Protein Sequence MDSRTGELITAPQAGNGVYIWEIENPLYFKIYRVEDPLYTRTRVYHIQIRFNHNLRRALHLHKAYLNFQVWTTSMTASGSTYLLRFMHLVNMYLDQLGVISINNVIRAVRFATARSYVSHVLENHSINFKIY

NCBI Accession YP_001974401.1
Location 1081-1470
Protein Name TrAP
Coding Region ATGCGATCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGGCACACAGGCAGGCCAAGAGGAGGGCCATCAGGAGGAGACGCATTGATATAGAGTGCGGGTGCTCCATCTACTTCCACATAGGCTGCACGGGACATGGATTCACGCACCGGGGAACTCATCACTGCACCTCAGGCGGGGAATGGCGTGTATATCTGGGAGATCGAAAATCCCCTGTATTTCAAGATATACAGAGTAGAGGACCCGCTATACACCAGAACAAGGGTATACCACATCCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCATACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTCAACTTATTTACTTAG
Protein Sequence MRSSSPSQPPSIKKAHRQAKRRAIRRRRIDIECGCSIYFHIGCTGHGFTHRGTHHCTSGGEWRVYLGDRKSPVFQDIQSRGPAIHQNKGIPHPDTVQPQPEESVASPQSIPELPSLDDIDDSFWVNLFT

NCBI Accession YP_001974402.1
Location 1382-2467
Gene Name Rep
Protein Name replication initiator
Coding Region ATGCCATCAGCTAAACGTTTTAAAGTCTCAGCCAAAAATTATTTCATCACATATCCCCAATGCTCTCTTACCAAAGAGGAGACACTTTCCCAATTACAACAACTAACAACTCCAGTTAACAAGAAGTTCATCAAGATCTGCAGAGAACTTCATGAAAATGGGGAGCCTCATCTCCACGTCCTCATCCAGTTCGAGGGCAAGTACCAGTGCACGAATTACAGATTCTTCGATCTGGTTTCCTCAACCCGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTGGAATGGGGAGAGTTCCAGATCGACGGCAGATCTGCTAGAGGAGGCCAGCAATCTGTTAACGATACATATGCCAAGGCGTTAAATGCAGGCTCAGCAGAGGCTGCTCTGCAAATAATAAAGGAAGAACAACCACAACATTTCTTCCTTCAACATCACAACCTGACTAATAACGCTACCAAAATATTCGCAAAGGCTCCGGAACCTTGGGCTCCTCCGTTTCCACTCTCCTCTTTCACTAACGTTCCGGACGAGATGATTGAATGGGCAGATGAATATTTTGGAAGAGGTTCCGCTGCGCGGCCACAGAGACCAGTAAGTCTCATAGTCGAAGGTGATTCGAGGACAGGGAAGACAATGTGGGCTCGAGCGTTAGGCCCACATAACTACCTGAGTGGACACTTAGACTTCAATTCCCGGGTCTTCTCAAACGAAATGGAGTATAACGTCATTGATGACGTCGCACCGCACTATCTAAAACTAAAGCACTGGAAAGAGTTGCTGGGGGCCCAAAAAGACTGGCAGTCCAATTGCAAATACGGCAAGCCAGTTCAAATTAAAGGAGGGATCCCAGCAATCGTGCTATGCAATCCTGGTGAGGGTGCCAGCTATAAAGAGTTCCTGGACAAGGAGGAAAATGCATCCCTCAGGAACTGGACTCTCAAGAATGCGATCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGGCACACAGGCAGGCCAAGAGGAGGGCCATCAGGAGGAGACGCATTGA
Protein Sequence MPSAKRFKVSAKNYFITYPQCSLTKEETLSQLQQLTTPVNKKFIKICRELHENGEPHLHVLIQFEGKYQCTNYRFFDLVSSTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQSVNDTYAKALNAGSAEAALQIIKEEQPQHFFLQHHNLTNNATKIFAKAPEPWAPPFPLSSFTNVPDEMIEWADEYFGRGSAARPQRPVSLIVEGDSRTGKTMWARALGPHNYLSGHLDFNSRVFSNEMEYNVIDDVAPHYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKEFLDKEENASLRNWTLKNAIFITLTAPLYQEGTQAGQEEGHQEETH

NCBI Accession YP_001974403.1
Location 2053-2316
Gene Name Rep
Protein Name AC4
Coding Region ATGAAAATGGGGAGCCTCATCTCCACGTCCTCATCCAGTTCGAGGGCAAGTACCAGTGCACGAATTACAGATTCTTCGATCTGGTTTCCTCAACCCGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTGGAATGGGGAGAGTTCCAGATCGACGGCAGATCTGCTAGAGGAGGCCAGCAATCTGTTAACGATACATATGCCAAGGCGTTAA
Protein Sequence MKMGSLISTSSSSSRASTSARITDSSIWFPQPGQHISIQTFRELNPAPTSSPTSTRTEIHWNGESSRSTADLLEEASNLLTIHMPRR

References More References in PubMed

1

Molecular characterization and experimental host range of an isolate of Wissadula golden mosaic St. Thomas virus.

Collins AM, et al.  Virus Genes. 2009 Dec;39(3):387-95. doi: 10.1007/s11262-009-0401-y. Epub 2009 Sep 20.

PMID: 19768650
2

Molecular characterization and experimental host range of an isolate of Macroptilium golden mosaic virus that infects Wissadula amplissima in Jamaica.

Collins A, et al.  Virus Res. 2010 Jun;150(1-2):148-52. doi: 10.1016/j.virusres.2010.03.008. Epub 2010 Mar 25.

PMID: 20347895
3

First report of a complete genome sequence for a begomovirus infecting Jatropha gossypifolia in the Americas.

Simmonds-Gordon RN, et al.  Arch Virol. 2014 Oct;159(10):2815-8. doi: 10.1007/s00705-014-2112-5. Epub 2014 May 29.

PMID: 24872185
4

Genetic Diversity Among Geminiviruses Associated with the Weed Species Sida spp., Macroptilium lathyroides, and Wissadula amplissima from Jamaica.

Roye ME, et al.  Plant Dis. 1997 Nov;81(11):1251-1258. doi: 10.1094/PDIS.1997.81.11.1251.

PMID: 30861729