Wissadula golden mosaic virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000880135.1 |
| Isolate |
Jamaica: St. Thomas parish |
| Release date |
2015/2/22 |
| Submitter |
Collins,A.M., Roye,M.E. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGTGCCCCCCCCCTTTTGCCGTACTATCACGCGCGCTCCCCTTTTCCTCACTCGCGCTCTCGTCCAATCATATTGCGTCTGCCGCGCCTAATTATTTTGAACAACTTGGGCCCTAAGTTGTTGAATGGTCTATAAATGAAAAGCTGATTGGCCCACGTACTTTAACTCAAAATGTCTAAGCGCGATGGCTCCTGGCGCTCGATCGCGGGAACCGCCAAGGTTAGGCGCATTTTGAATTTCTCCCCTCGTGGAGGTGGTGGTTTAAAACCGACCAGGGCCCAGGAATGGGTTAACAGGCCTATGTACAGGAAGCCCAAGATATACCGGACGCTGAGAACCCCCGACATCCCAAGAGGATGTGAAGGCCCATGCAAGGTGCAGTCCTATGAACAGCGCCAGGATATCTCTCACGTGGGTAAGGTCATGTGTATATCCGATGTCACACGTGGTAACGGCATTACCCACCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTTTAGGTAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCATACGAACAGTGTTATGTTCTGGTTGGTCAGGGACCGTCGACCGTATGGCACGCCTATGGATTTCGGCCAGGTGTTCAACATGTTCGACAACGAGCCCAGCACTGCCACGGTTAAGAACGATCTCCGGGATCGTTACCAGGTTATGCACCGATTCTATGGGAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCAGGCTATTGTCAGGCGGTTCTGGAAGGTCAATAACCATGTGGTCTACAACCACCAGGAGGCTGGCAAATACGAGAACCACACGGAGAACGCTCTGTTATTGTATATGGCATGTACACATGCCTTTAATCCTGTGTATGCAACTCTGAAGATTCGAATCTATTTTTATGATTCGGTCATGAATTAATAAATTTTAAAATTTATTGAATGATTCTCCAGTACATGACTCACATACGATCTGGCTGTTGCAAAACGAACAGCTCTAATTACATTGTTAATGGAAATAACGCCTAACTGATCTAAGTACATGTTGACTAAGTGCATAAACCTAAGTAAATAAGTTGACCCAGAAGCTGTCATCGATGTCGTCCAGACTTGGAAGTTCAGGTATGCTTTGTGGAGATGCAACGCTCTCCTCAGGTTGTGGTTGAACCGTATCTGGATGTGGTATACCCTTGTTCTGGTGTATAGCGGGTCCTCTACTCTGTATATCTTGAAATACAGGGGATTTTCGATCTCCCAGATATACACGCCATTCCCCGCCTGAGGTGCAGTGATGAGTTCCCCGGTGCGTGAATCCATGTCCCGTGCAGCCTATGTGGAAGTAGATGGAGCACCCGCACTCTATATCAATGCGTCTCCTCCTGATGGCCCTCCTCTTGGCCTGCCTGTGTGCCTTCTTGATAGAGGGGGGCTGTGAGGGTGATGAAGATCGCATTCTTGAGAGTCCAGTTCCTGAGGGATGCATTTTCCTCCTTGTCCAGGAACTCTTTATAGCTGGCACCCTCACCAGGATTGCATAGCACGATTGCTGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTATTTGCAATTGGACTGCCAGTCTTTTTGGGCCCCCAGCAACTCTTTCCAGTGCTTTAGTTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCATTTCGTTTGAGAAGACCCGGGAATTGAAGTCTAAGTGTCCACTCAGGTAGTTATGTGGGCCTAACGCTCGAGCCCACATTGTCTTCCCTGTCCTCGAATCACCTTCGACTATGAGACTTACTGGTCTCTGTGGCCGCGCAGCGGAACCTCTTCCAAAATATTCATCTGCCCATTCAATCATCTCGTCCGGAACGTTAGTGAAAGAGGAGAGTGGAAACGGAGGAGCCCAAGGTTCCGGAGCCTTTGCGAATATTTTGGTAGCGTTATTAGTCAGGTTGTGATGTTGAAGGAAGAAATGTTGTGGTTGTTCTTCCTTTATTATTTGCAGAGCAGCCTCTGCTGAGCCTGCATTTAACGCCTTGGCATATGTATCGTTAACAGATTGCTGGCCTCCTCTAGCAGATCTGCCGTCGATCTGGAACTCTCCCCATTCCAGTGTATCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCGGGTTGAGGAAACCAGATCGAAGAATCTGTAATTCGTGCACTGGTACTTGCCCTCGAACTGGATGAGGACGTGGAGATGAGGCTCCCCATTTTCATGAAGTTCTCTGCAGATCTTGATGAACTTCTTGTTAACTGGAGTTGTTAGTTGTTGTAATTGGGAAAGTGTCTCCTCTTTGGTAAGAGAGCATTGGGGATATGTGATGAAATAATTTTTGGCTGAGACTTTAAAACGTTTAGCTGATGGCATTTTTGTAAAAAAGAGGTGTACCCCAGATGAGTTACCCCGATTGATCTCTCCAACTTCTGTGCTATGTATTGGGGTATGGGGTATTATATATACTAGAACCCTCAATAGGACTTTGGATCTCGTTCACACACGTGGCGGCCATCCGATATAATATT
Gene Information
|
NCBI Accession
|
YP_001974399.1
|
|
Location
|
184-939 |
|
Gene Name
|
CP |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCTAAGCGCGATGGCTCCTGGCGCTCGATCGCGGGAACCGCCAAGGTTAGGCGCATTTTGAATTTCTCCCCTCGTGGAGGTGGTGGTTTAAAACCGACCAGGGCCCAGGAATGGGTTAACAGGCCTATGTACAGGAAGCCCAAGATATACCGGACGCTGAGAACCCCCGACATCCCAAGAGGATGTGAAGGCCCATGCAAGGTGCAGTCCTATGAACAGCGCCAGGATATCTCTCACGTGGGTAAGGTCATGTGTATATCCGATGTCACACGTGGTAACGGCATTACCCACCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTTTAGGTAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCATACGAACAGTGTTATGTTCTGGTTGGTCAGGGACCGTCGACCGTATGGCACGCCTATGGATTTCGGCCAGGTGTTCAACATGTTCGACAACGAGCCCAGCACTGCCACGGTTAAGAACGATCTCCGGGATCGTTACCAGGTTATGCACCGATTCTATGGGAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCAGGCTATTGTCAGGCGGTTCTGGAAGGTCAATAACCATGTGGTCTACAACCACCAGGAGGCTGGCAAATACGAGAACCACACGGAGAACGCTCTGTTATTGTATATGGCATGTACACATGCCTTTAATCCTGTGTATGCAACTCTGAAGATTCGAATCTATTTTTATGATTCGGTCATGAATTAA |
|
Protein Sequence
|
MSKRDGSWRSIAGTAKVRRILNFSPRGGGGLKPTRAQEWVNRPMYRKPKIYRTLRTPDIPRGCEGPCKVQSYEQRQDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHRFYGKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHAFNPVYATLKIRIYFYDSVMN |
|
NCBI Accession
|
YP_001974400.1
|
|
Location
|
936-1334 |
|
Protein Name
|
REn |
|
Coding Region
|
ATGGATTCACGCACCGGGGAACTCATCACTGCACCTCAGGCGGGGAATGGCGTGTATATCTGGGAGATCGAAAATCCCCTGTATTTCAAGATATACAGAGTAGAGGACCCGCTATACACCAGAACAAGGGTATACCACATCCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCATACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTCAACTTATTTACTTAGGTTTATGCACTTAGTCAACATGTACTTAGATCAGTTAGGCGTTATTTCCATTAACAATGTAATTAGAGCTGTTCGTTTTGCAACAGCCAGATCGTATGTGAGTCATGTACTGGAGAATCATTCAATAAATTTTAAAATTTATTAA |
|
Protein Sequence
|
MDSRTGELITAPQAGNGVYIWEIENPLYFKIYRVEDPLYTRTRVYHIQIRFNHNLRRALHLHKAYLNFQVWTTSMTASGSTYLLRFMHLVNMYLDQLGVISINNVIRAVRFATARSYVSHVLENHSINFKIY |
|
NCBI Accession
|
YP_001974401.1
|
|
Location
|
1081-1470 |
|
Protein Name
|
TrAP |
|
Coding Region
|
ATGCGATCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGGCACACAGGCAGGCCAAGAGGAGGGCCATCAGGAGGAGACGCATTGATATAGAGTGCGGGTGCTCCATCTACTTCCACATAGGCTGCACGGGACATGGATTCACGCACCGGGGAACTCATCACTGCACCTCAGGCGGGGAATGGCGTGTATATCTGGGAGATCGAAAATCCCCTGTATTTCAAGATATACAGAGTAGAGGACCCGCTATACACCAGAACAAGGGTATACCACATCCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCATACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTCAACTTATTTACTTAG |
|
Protein Sequence
|
MRSSSPSQPPSIKKAHRQAKRRAIRRRRIDIECGCSIYFHIGCTGHGFTHRGTHHCTSGGEWRVYLGDRKSPVFQDIQSRGPAIHQNKGIPHPDTVQPQPEESVASPQSIPELPSLDDIDDSFWVNLFT |
|
NCBI Accession
|
YP_001974402.1
|
|
Location
|
1382-2467 |
|
Gene Name
|
Rep |
|
Protein Name
|
replication initiator |
|
Coding Region
|
ATGCCATCAGCTAAACGTTTTAAAGTCTCAGCCAAAAATTATTTCATCACATATCCCCAATGCTCTCTTACCAAAGAGGAGACACTTTCCCAATTACAACAACTAACAACTCCAGTTAACAAGAAGTTCATCAAGATCTGCAGAGAACTTCATGAAAATGGGGAGCCTCATCTCCACGTCCTCATCCAGTTCGAGGGCAAGTACCAGTGCACGAATTACAGATTCTTCGATCTGGTTTCCTCAACCCGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTGGAATGGGGAGAGTTCCAGATCGACGGCAGATCTGCTAGAGGAGGCCAGCAATCTGTTAACGATACATATGCCAAGGCGTTAAATGCAGGCTCAGCAGAGGCTGCTCTGCAAATAATAAAGGAAGAACAACCACAACATTTCTTCCTTCAACATCACAACCTGACTAATAACGCTACCAAAATATTCGCAAAGGCTCCGGAACCTTGGGCTCCTCCGTTTCCACTCTCCTCTTTCACTAACGTTCCGGACGAGATGATTGAATGGGCAGATGAATATTTTGGAAGAGGTTCCGCTGCGCGGCCACAGAGACCAGTAAGTCTCATAGTCGAAGGTGATTCGAGGACAGGGAAGACAATGTGGGCTCGAGCGTTAGGCCCACATAACTACCTGAGTGGACACTTAGACTTCAATTCCCGGGTCTTCTCAAACGAAATGGAGTATAACGTCATTGATGACGTCGCACCGCACTATCTAAAACTAAAGCACTGGAAAGAGTTGCTGGGGGCCCAAAAAGACTGGCAGTCCAATTGCAAATACGGCAAGCCAGTTCAAATTAAAGGAGGGATCCCAGCAATCGTGCTATGCAATCCTGGTGAGGGTGCCAGCTATAAAGAGTTCCTGGACAAGGAGGAAAATGCATCCCTCAGGAACTGGACTCTCAAGAATGCGATCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGGCACACAGGCAGGCCAAGAGGAGGGCCATCAGGAGGAGACGCATTGA |
|
Protein Sequence
|
MPSAKRFKVSAKNYFITYPQCSLTKEETLSQLQQLTTPVNKKFIKICRELHENGEPHLHVLIQFEGKYQCTNYRFFDLVSSTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQSVNDTYAKALNAGSAEAALQIIKEEQPQHFFLQHHNLTNNATKIFAKAPEPWAPPFPLSSFTNVPDEMIEWADEYFGRGSAARPQRPVSLIVEGDSRTGKTMWARALGPHNYLSGHLDFNSRVFSNEMEYNVIDDVAPHYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKEFLDKEENASLRNWTLKNAIFITLTAPLYQEGTQAGQEEGHQEETH |
|
NCBI Accession
|
YP_001974403.1
|
|
Location
|
2053-2316 |
|
Gene Name
|
Rep |
|
Protein Name
|
AC4 |
|
Coding Region
|
ATGAAAATGGGGAGCCTCATCTCCACGTCCTCATCCAGTTCGAGGGCAAGTACCAGTGCACGAATTACAGATTCTTCGATCTGGTTTCCTCAACCCGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTGGAATGGGGAGAGTTCCAGATCGACGGCAGATCTGCTAGAGGAGGCCAGCAATCTGTTAACGATACATATGCCAAGGCGTTAA |
|
Protein Sequence
|
MKMGSLISTSSSSSRASTSARITDSSIWFPQPGQHISIQTFRELNPAPTSSPTSTRTEIHWNGESSRSTADLLEEASNLLTIHMPRR |