Whitefly-associated begomovirus 6
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_003029155.1 |
| Isolate |
Puerto Rico |
| Release date |
2018/8/26 |
| Submitter |
Rosario,K., Seah,Y.M., Marr,C., Varsani,A., Kraberger,S., Stainton,D., Moriones,E., Polston,J.E., Duffy,S., Breitbart,M. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
TAATATTACCGGATGGCCGCGCCCCCGCCCCCCTGGTGGCCCCCGCGCGCTCTCTTTTTGTCCTTTAATTTAGAATTAAAGGTGGTCCCCCGCGCTCTCGACCAATGGGAATGCGTCTGACGAGCTTAGATATGTTGAACTCCTTCCCGCCTAAGTTGTTGGGTAGTCTATAAATGAAAAGCCCATTGGTCCCTTGGCCCACTGTCTTTAACTCAAAATGCCTAAGCGCGATCTCCCGTGGCGCTCGATGGCGGGACCCTCCAAGGTCAGTCGCAATGCTAATTATTCTCCTCGTTCAGGAAGTGGGCCAAGAATCAACAAGGCCTCTGAATGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATTTATCGGACCTTGAGGTCGCCTGATGTGCCCAGAGGATGTGAAGGGCCTTGTAAAGTCCAGTCGTATGAACAGCGCCATGACATCTCCCATGTTGGCAAGGTCATGTGCATCTCTGATGTGACACGTGGTAATGGCATCACTCATCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTACATTTTAGGGAAGATCTGGATGGACGAGAATATCAAGCTCAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTACGAGACCGTAGACCGTATAGCTCGCCTATGGATTTTGGCCAGGTGTTCAACATGTTCGACAACGAGCCCAGCACTGCCACTGTTAAGAACGATCTCCGCGATCGTTTCCAGGTCATGCATAAGTTCTATGGCAAGGTGACAGGTGGCCAGTATGCCAGCAATGAACAGGCTATTGTCAAGAGATTCTGGAAGGTCAACAATCATGTGGTCTACAATCATCAGGAGGCTGGCAAGTACGAGAATCACACGGAGAACGCTTTATTATTGTATATGGCATGTACTCATGCGTCTAATCCTGTATATGCAACTCTGAAGATCCGAATCTATTTTTACGATTCGATCATGAATTAATAAAGCTTGAATTTTATTGAATGATTTTCCAGTACATGATTTACATACGATCTGTCTGTTGCGAAACGAACAGCTCTAATTACATTGTTTATGCAAATCACGCCTAACTGATCTAAGTACATGTTAACTAAATGTTTAAACCTAGCTAAATAAGTTGACCCAGAAGCTGTCGTCGATGTCGTCCAGACTTGGAAGTTCAGGTAAGCTTTGTGGAGACCCAACGCTCTCCTCAGGTTGTGGTTGAACCGTATCTGAACGTGGTACACCCTGCTGTTGGTGTACGCTGGTTCCTCTACTTTGTACATCTTGAAATAGAGGGGATTTTCGATCTCCCAGGTATACACGCCATTCTCTGCCTGAGGTGCAGTGATGAGTTCCCCGGTGCGTGAATCCATGTCCTGTGCAGCCTATGTGGAAGTATATGGAGCAACCGCACTCCAGGTCAATCCGCCTTCTCCTGATGGCTTTCTTCTTAGCCTGCCTGTGTGCTGTCTTGATAGAGGGCGGATTGGAGGGTGATGAAGATCGCATTCTTGATGGTCCAGCTCTTGAGCGCTGCGTTTTCCTCTTTGTCCAGGAAATCTTTATAGCTGGCACCCTCACCTGGATTGCATAGCACGATTGCTGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTACTTGCAATTTGACTGCCAGTCCTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTTGAATAGACTCGACCATTGAAGTCCAGGTGGCCACTGAGGTAGTTATGTGGGCCTAATGCCCGAGCCCACATGGTCTTGCCTGTCCTTGAATCACCTTCAATTATGATACTCAATGGTCTATCTGGCCGCGCAGCGGAATCCCTCCGGAAATAGTCATCGGCCCACTCTTGCATTTCTTCCGGGACGTTTGTGAAAGAGGAAAGTTGAAATGGAGGGACCCATGGTTCCGGAGCCTTCTTGAAAATCCTCTGAGCATTGGCCAGGAGATTGTGATGTTGGAGGAAGAAATGCTGAGGCTGCTCCTCCTTTATTATGTTTAGCGCCTCTTCTGCACAAGAGGCATTCAGCGCCTTGGCATACGTGTCATTAACCGATTGGCAGCCTCCTCTAGCACTTCTCCCGTCGATCTGGAATTCTCCCCATTCCACTGTATCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTCGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGGATGGGGAGACCAAGTCGAACAGTCTGTTATTCGTGCAGACGTATTTCCCTTCGAACTGTATGAGCACATGGAGATGAGGCTCCCCATTCTCGTGAAGTTCTCTGCAGATTTTGATATATTTCTTGTTAACTGGAACGGCTAGGTTTTGTAATTGGGAAAGTGCTTCTTCTTTGCTAAGAGAGCACTGTGGATAAGTGAGGAAATAGTTTTTGGACTGAACTCTAAAACGTCTAACCGATGGCATTTTTGTAATAAGAAGGGTGTACTCCAATTGGAGACTCGCTCAAACTTGCTCATTCAATTGGAGACTGGAGTACAATATATACTAGAACCCTCAATAGGGCTTTGAATCTCGTTCACACACGTGGCGGCCATCCGTTC
Gene Information
|
NCBI Accession
|
YP_009508343.1
|
|
Location
|
218-973 |
|
Protein Name
|
capsid protein |
|
Coding Region
|
ATGCCTAAGCGCGATCTCCCGTGGCGCTCGATGGCGGGACCCTCCAAGGTCAGTCGCAATGCTAATTATTCTCCTCGTTCAGGAAGTGGGCCAAGAATCAACAAGGCCTCTGAATGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATTTATCGGACCTTGAGGTCGCCTGATGTGCCCAGAGGATGTGAAGGGCCTTGTAAAGTCCAGTCGTATGAACAGCGCCATGACATCTCCCATGTTGGCAAGGTCATGTGCATCTCTGATGTGACACGTGGTAATGGCATCACTCATCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTACATTTTAGGGAAGATCTGGATGGACGAGAATATCAAGCTCAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTACGAGACCGTAGACCGTATAGCTCGCCTATGGATTTTGGCCAGGTGTTCAACATGTTCGACAACGAGCCCAGCACTGCCACTGTTAAGAACGATCTCCGCGATCGTTTCCAGGTCATGCATAAGTTCTATGGCAAGGTGACAGGTGGCCAGTATGCCAGCAATGAACAGGCTATTGTCAAGAGATTCTGGAAGGTCAACAATCATGTGGTCTACAATCATCAGGAGGCTGGCAAGTACGAGAATCACACGGAGAACGCTTTATTATTGTATATGGCATGTACTCATGCGTCTAATCCTGTATATGCAACTCTGAAGATCCGAATCTATTTTTACGATTCGATCATGAATTAA |
|
Protein Sequence
|
MPKRDLPWRSMAGPSKVSRNANYSPRSGSGPRINKASEWVNRPMYRKPRIYRTLRSPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHKFYGKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN |
|
NCBI Accession
|
YP_009508344.1
|
|
Location
|
970-1368 |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGGATTCACGCACCGGGGAACTCATCACTGCACCTCAGGCAGAGAATGGCGTGTATACCTGGGAGATCGAAAATCCCCTCTATTTCAAGATGTACAAAGTAGAGGAACCAGCGTACACCAACAGCAGGGTGTACCACGTTCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGGGTCTCCACAAAGCTTACCTGAACTTCCAAGTCTGGACGACATCGACGACAGCTTCTGGGTCAACTTATTTAGCTAGGTTTAAACATTTAGTTAACATGTACTTAGATCAGTTAGGCGTGATTTGCATAAACAATGTAATTAGAGCTGTTCGTTTCGCAACAGACAGATCGTATGTAAATCATGTACTGGAAAATCATTCAATAAAATTCAAGCTTTATTAA |
|
Protein Sequence
|
MDSRTGELITAPQAENGVYTWEIENPLYFKMYKVEEPAYTNSRVYHVQIRFNHNLRRALGLHKAYLNFQVWTTSTTASGSTYLARFKHLVNMYLDQLGVICINNVIRAVRFATDRSYVNHVLENHSIKFKLY |
|
NCBI Accession
|
YP_009508345.1
|
|
Location
|
1115-1504 |
|
Protein Name
|
transactivator protein |
|
Coding Region
|
ATGCGATCTTCATCACCCTCCAATCCGCCCTCTATCAAGACAGCACACAGGCAGGCTAAGAAGAAAGCCATCAGGAGAAGGCGGATTGACCTGGAGTGCGGTTGCTCCATATACTTCCACATAGGCTGCACAGGACATGGATTCACGCACCGGGGAACTCATCACTGCACCTCAGGCAGAGAATGGCGTGTATACCTGGGAGATCGAAAATCCCCTCTATTTCAAGATGTACAAAGTAGAGGAACCAGCGTACACCAACAGCAGGGTGTACCACGTTCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGGGTCTCCACAAAGCTTACCTGAACTTCCAAGTCTGGACGACATCGACGACAGCTTCTGGGTCAACTTATTTAGCTAG |
|
Protein Sequence
|
MRSSSPSNPPSIKTAHRQAKKKAIRRRRIDLECGCSIYFHIGCTGHGFTHRGTHHCTSGREWRVYLGDRKSPLFQDVQSRGTSVHQQQGVPRSDTVQPQPEESVGSPQSLPELPSLDDIDDSFWVNLFS |
|
NCBI Accession
|
YP_009508346.1
|
|
Location
|
1446-2501 |
|
Protein Name
|
replication initiator protein |
|
Coding Region
|
ATGCCATCGGTTAGACGTTTTAGAGTTCAGTCCAAAAACTATTTCCTCACTTATCCACAGTGCTCTCTTAGCAAAGAAGAAGCACTTTCCCAATTACAAAACCTAGCCGTTCCAGTTAACAAGAAATATATCAAAATCTGCAGAGAACTTCACGAGAATGGGGAGCCTCATCTCCATGTGCTCATACAGTTCGAAGGGAAATACGTCTGCACGAATAACAGACTGTTCGACTTGGTCTCCCCATCCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACAGTGGAATGGGGAGAATTCCAGATCGACGGGAGAAGTGCTAGAGGAGGCTGCCAATCGGTTAATGACACGTATGCCAAGGCGCTGAATGCCTCTTGTGCAGAAGAGGCGCTAAACATAATAAAGGAGGAGCAGCCTCAGCATTTCTTCCTCCAACATCACAATCTCCTGGCCAATGCTCAGAGGATTTTCAAGAAGGCTCCGGAACCATGGGTCCCTCCATTTCAACTTTCCTCTTTCACAAACGTCCCGGAAGAAATGCAAGAGTGGGCCGATGACTATTTCCGGAGGGATTCCGCTGCGCGGCCAGATAGACCATTGAGTATCATAATTGAAGGTGATTCAAGGACAGGCAAGACCATGTGGGCTCGGGCATTAGGCCCACATAACTACCTCAGTGGCCACCTGGACTTCAATGGTCGAGTCTATTCAAACGAAGTGGAGTATAACGTCATTGATGACGTCGCACCGCACTATCTAAAGCTAAAGCACTGGAAAGAATTGCTGGGGGCCCAAAAGGACTGGCAGTCAAATTGCAAGTACGGCAAGCCAGTTCAAATTAAAGGAGGTATCCCAGCAATCGTGCTATGCAATCCAGGTGAGGGTGCCAGCTATAAAGATTTCCTGGACAAAGAGGAAAACGCAGCGCTCAAGAGCTGGACCATCAAGAATGCGATCTTCATCACCCTCCAATCCGCCCTCTATCAAGACAGCACACAGGCAGGCTAA |
|
Protein Sequence
|
MPSVRRFRVQSKNYFLTYPQCSLSKEEALSQLQNLAVPVNKKYIKICRELHENGEPHLHVLIQFEGKYVCTNNRLFDLVSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDTVEWGEFQIDGRSARGGCQSVNDTYAKALNASCAEEALNIIKEEQPQHFFLQHHNLLANAQRIFKKAPEPWVPPFQLSSFTNVPEEMQEWADDYFRRDSAARPDRPLSIIIEGDSRTGKTMWARALGPHNYLSGHLDFNGRVYSNEVEYNVIDDVAPHYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKDFLDKEENAALKSWTIKNAIFITLQSALYQDSTQAG |
|
NCBI Accession
|
YP_009508347.1
|
|
Location
|
2087-2344 |
|
Protein Name
|
AC4 |
|
Coding Region
|
ATGGGGAGCCTCATCTCCATGTGCTCATACAGTTCGAAGGGAAATACGTCTGCACGAATAACAGACTGTTCGACTTGGTCTCCCCATCCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACAGTGGAATGGGGAGAATTCCAGATCGACGGGAGAAGTGCTAGAGGAGGCTGCCAATCGGTTAATGACACGTATGCCAAGGCGCTGA |
|
Protein Sequence
|
MGSLISMCSYSSKGNTSARITDCSTWSPHPGQHISIRTYRELNRAPTSSPTSTRTEIQWNGENSRSTGEVLEEAANRLMTRMPRR |