Whitefly-associated begomovirus 4
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_003029145.1 |
| Isolate |
Guatemala |
| Release date |
2018/8/26 |
| Submitter |
Rosario,K., Seah,Y.M., Marr,C., Varsani,A., Kraberger,S., Stainton,D., Moriones,E., Polston,J.E., Duffy,S., Breitbart,M. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
TAATATTACCGGATGGCCGCGCTTTGGTGCCCCCCTTTTGCTTTAGCCGTACTACACGCGCGCTTTTGTCTTTTGCACTCGCGCTATCGTCCAATCATATTGTGGCTTCCGCGCTTAGATATTTCAAACAACTTGGGCCCTAAGTTGTTTCAGGCCTTTAAATGGAAATTCAGTTGGGCCGAAGGCCTCATAACCCAAAATGCCTAAGCGTGATGCTTCGTGGCGTTTGATGGCGGGAACCTCAAAGGTTAGTCGCAATGTGAATTATTCCCCTCGTGGAGGTGGTGGCCCAAAAATGAACAAGGCCTCTGAATGGGTGAACAGGCCCATGTATAGGAAGCCCAGGATCTACCGGACTCTGAGGACGCCAGATGTGCCAAGAGGCTGTGAAGGCCCATGCAAGGTCCAGTCCTATGAACAGCGCCACGACATCTCACATGTCGGCAAGGTAATGTGTATCTCTGATGTTACACGTGGTAATGGCATTACCCACCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTCTAGGTAAGATATGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTCAGGGATCGTAGACCGTATGGGACTCCTATGGATTTTGGTCAAGTCTTCAACATGTTCGACAACGAGCCTAGTACTGCGACTGTTAAGAACGATCTCCGAGATCGTTACCAGGTGATGCACAAGTTCTATGCTAAGGTCACAGGTGGTCAATATGCCAGCAACGAGCAGGCGTTGGTTAAGAGATTCTGGAAGGTGAACAATCATGTGGTTTACAACCATCAAGAGGCTGGGAAATACGAGAATCATACTGAGAATGCGTTATTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCAACTTTGAAGATTCGAATCTATTTTTATGATTCGATCATGAATTAATAAAKTTTGAATTTTATTGAATGATTTTCCAATACATGCCTTACATAGGCTCTGTCTGTCGCAAACTGGACAGCTCTAATTACATTGTTTATGGAAATAACGCCTAATCGATCTAAATACATGTTAACTAAGCGTCTAAACCTAGTTAAATAAGTTAACCCAGAAGCTGTCATCGATGTCGTCCAGACTTGGAAGTTCAGGTAGGCTTTGTGGAGATCCAACGCTTTCCTCAGGTTGTGGTTGAACCGTATCTGGATGTGGTATATTCTTGTTCTGGTGTATAGCAGGTCCTCTACGTTGTACATCTTGAAATACAGGGGATTTTCTATCTGCCAGGTATACACGCCATTCTCTGCCTGAGGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGACCCGTGCAATCTATGTGGAAGTATATGGAGCACCCGCAATCTAGATCAATGCGTCTCCTCCTGATGGCCCTCCTCTTGGCTTGCCTGTGTGCTTTCTTGATAGAGGGGGGAGCTGAGGGTGATGAAGATAACATTCTTGATGGTCCAGTTCCTGAGACCTGTGTTTTCCTCTTTGTTCAGGAAATCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGAGGGGATCCCCCCTTTAATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGCTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAGTAGACCCTGGAATTAAAGTCTAGATGACCACTTAAATAGTTATGTGGGCCTAATGCACGAGCCCACATTGTCTTCCCTGTCCTTGAATCACCTTCAACTACGAGACTTACTGGTCTTTCCGGCCGCGCAGCGCCGCGACGTCCAAAATACTCATCTGCCCACTCCTGCATCTCGTCGGGAACGTGAGTGAAAGAGGAGAGAGGAAACGGAGGAACCCACGGTTCTGGAGCCCTAGCGAATATCTTCTCCAAATTGGATCTGATGTTATGATTTTGTAGAACAAAATCTTTGGGCTGTTCCTCTTTCAAAATCATCATGGCAGATTGAACAGAATCTGCATTCAAGGCCTTCGCATATGAGTCATTAGCAGATTGTTTGCCTCCTCTAGCAGATCTGCCGTCGATTTGAAACTCTCCCCAGTCGACTGTGTCACCGTCCTTGGCGACGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTGGGATGAAATGGTGTTGATCTAGATGGGGAGACCAGGTCGAAGAATCTGTTATTCGTGCATTGGTATTTACCCTCGAACTGAACGAGCATGTGGAGATGAGGCTCCCCATTTTCATGAAACTCTCTGCAGACCCTGATGAATTTTTTGTTAACCGGCGTGACTAGGTTTTTTAACTGATGAAGTGCTTCCTCTTTGCTGAGGGAGCATTTTGGATATGTGAGGAAATAGTTTCTGGCATTTATTATGAAACGCTTGACCGATGGCATTTTTGTAATAAGAGGGGTGAAACCAATTGAGCTCTCCTCAAAACTGCGCTATGTATTGGTGTATTGGTTTCAATATATAGTAAAACCCTCATGGGTTAGATCCTCCACGTGGCGGCCATCCGCTA
Gene Information
|
NCBI Accession
|
YP_009508338.1
|
|
Location
|
230-955 |
|
Protein Name
|
capsid protein |
|
Coding Region
|
ATGGCGGGAACCTCAAAGGTTAGTCGCAATGTGAATTATTCCCCTCGTGGAGGTGGTGGCCCAAAAATGAACAAGGCCTCTGAATGGGTGAACAGGCCCATGTATAGGAAGCCCAGGATCTACCGGACTCTGAGGACGCCAGATGTGCCAAGAGGCTGTGAAGGCCCATGCAAGGTCCAGTCCTATGAACAGCGCCACGACATCTCACATGTCGGCAAGGTAATGTGTATCTCTGATGTTACACGTGGTAATGGCATTACCCACCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTCTAGGTAAGATATGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTCAGGGATCGTAGACCGTATGGGACTCCTATGGATTTTGGTCAAGTCTTCAACATGTTCGACAACGAGCCTAGTACTGCGACTGTTAAGAACGATCTCCGAGATCGTTACCAGGTGATGCACAAGTTCTATGCTAAGGTCACAGGTGGTCAATATGCCAGCAACGAGCAGGCGTTGGTTAAGAGATTCTGGAAGGTGAACAATCATGTGGTTTACAACCATCAAGAGGCTGGGAAATACGAGAATCATACTGAGAATGCGTTATTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCAACTTTGAAGATTCGAATCTATTTTTATGATTCGATCATGAATTAA |
|
Protein Sequence
|
MAGTSKVSRNVNYSPRGGGGPKMNKASEWVNRPMYRKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN |
|
NCBI Accession
|
YP_009508339.1
|
|
Location
|
952-1350 |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCACCTCAGGCAGAGAATGGCGTGTATACCTGGCAGATAGAAAATCCCCTGTATTTCAAGATGTACAACGTAGAGGACCTGCTATACACCAGAACAAGAATATACCACATCCAGATACGGTTCAACCACAACCTGAGGAAAGCGTTGGATCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTTAACTTATTTAACTAGGTTTAGACGCTTAGTTAACATGTATTTAGATCGATTAGGCGTTATTTCCATAAACAATGTAATTAGAGCTGTCCAGTTTGCGACAGACAGAGCCTATGTAAGGCATGTATTGGAAAATCATTCAATAAAATTCAAAMTTTATTAA |
|
Protein Sequence
|
MDSRTGELITAPQAENGVYTWQIENPLYFKMYNVEDLLYTRTRIYHIQIRFNHNLRKALDLHKAYLNFQVWTTSMTASGLTYLTRFRRLVNMYLDRLGVISINNVIRAVQFATDRAYVRHVLENHSIKFKJY |
|
NCBI Accession
|
YP_009508340.1
|
|
Location
|
1097-1486 |
|
Protein Name
|
transactivator protein |
|
Coding Region
|
ATGTTATCTTCATCACCCTCAGCTCCCCCCTCTATCAAGAAAGCACACAGGCAAGCCAAGAGGAGGGCCATCAGGAGGAGACGCATTGATCTAGATTGCGGGTGCTCCATATACTTCCACATAGATTGCACGGGTCATGGATTCACGCACAGGGGAACTCATCACTGCACCTCAGGCAGAGAATGGCGTGTATACCTGGCAGATAGAAAATCCCCTGTATTTCAAGATGTACAACGTAGAGGACCTGCTATACACCAGAACAAGAATATACCACATCCAGATACGGTTCAACCACAACCTGAGGAAAGCGTTGGATCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTTAACTTATTTAACTAG |
|
Protein Sequence
|
MLSSSPSAPPSIKKAHRQAKRRAIRRRRIDLDCGCSIYFHIDCTGHGFTHRGTHHCTSGREWRVYLADRKSPVFQDVQRRGPAIHQNKNIPHPDTVQPQPEESVGSPQSLPELPSLDDIDDSFWVNLFN |
|
NCBI Accession
|
YP_009508341.1
|
|
Location
|
1398-2483 |
|
Protein Name
|
replication initiator protein |
|
Coding Region
|
ATGCCATCGGTCAAGCGTTTCATAATAAATGCCAGAAACTATTTCCTCACATATCCAAAATGCTCCCTCAGCAAAGAGGAAGCACTTCATCAGTTAAAAAACCTAGTCACGCCGGTTAACAAAAAATTCATCAGGGTCTGCAGAGAGTTTCATGAAAATGGGGAGCCTCATCTCCACATGCTCGTTCAGTTCGAGGGTAAATACCAATGCACGAATAACAGATTCTTCGACCTGGTCTCCCCATCTAGATCAACACCATTTCATCCCAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACGTCGCCAAGGACGGTGACACAGTCGACTGGGGAGAGTTTCAAATCGACGGCAGATCTGCTAGAGGAGGCAAACAATCTGCTAATGACTCATATGCGAAGGCCTTGAATGCAGATTCTGTTCAATCTGCCATGATGATTTTGAAAGAGGAACAGCCCAAAGATTTTGTTCTACAAAATCATAACATCAGATCCAATTTGGAGAAGATATTCGCTAGGGCTCCAGAACCGTGGGTTCCTCCGTTTCCTCTCTCCTCTTTCACTCACGTTCCCGACGAGATGCAGGAGTGGGCAGATGAGTATTTTGGACGTCGCGGCGCTGCGCGGCCGGAAAGACCAGTAAGTCTCGTAGTTGAAGGTGATTCAAGGACAGGGAAGACAATGTGGGCTCGTGCATTAGGCCCACATAACTATTTAAGTGGTCATCTAGACTTTAATTCCAGGGTCTACTCGAACGAAGTGGAGTATAACGTCATTGATGACGTCGCACCGCAATATCTAAAGCTAAAGCACTGGAAAGAGCTTCTGGGGGCCCAGAAGGACTGGCAGTCAAATTGCAAATACGGCAAGCCAGTTCAAATTAAAGGGGGGATCCCCTCAATCGTGCTTTGCAATCCTGGTGAGGGTGCCAGCTATAAAGATTTCCTGAACAAAGAGGAAAACACAGGTCTCAGGAACTGGACCATCAAGAATGTTATCTTCATCACCCTCAGCTCCCCCCTCTATCAAGAAAGCACACAGGCAAGCCAAGAGGAGGGCCATCAGGAGGAGACGCATTGA |
|
Protein Sequence
|
MPSVKRFIINARNYFLTYPKCSLSKEEALHQLKNLVTPVNKKFIRVCREFHENGEPHLHMLVQFEGKYQCTNNRFFDLVSPSRSTPFHPNIQGAKSSSDVKSYVAKDGDTVDWGEFQIDGRSARGGKQSANDSYAKALNADSVQSAMMILKEEQPKDFVLQNHNIRSNLEKIFARAPEPWVPPFPLSSFTHVPDEMQEWADEYFGRRGAARPERPVSLVVEGDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEVEYNVIDDVAPQYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLNKEENTGLRNWTIKNVIFITLSSPLYQESTQASQEEGHQEETH |
|
NCBI Accession
|
YP_009508342.1
|
|
Location
|
2069-2326 |
|
Protein Name
|
AC4 |
|
Coding Region
|
ATGGGGAGCCTCATCTCCACATGCTCGTTCAGTTCGAGGGTAAATACCAATGCACGAATAACAGATTCTTCGACCTGGTCTCCCCATCTAGATCAACACCATTTCATCCCAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACGTCGCCAAGGACGGTGACACAGTCGACTGGGGAGAGTTTCAAATCGACGGCAGATCTGCTAGAGGAGGCAAACAATCTGCTAATGACTCATATGCGAAGGCCTTGA |
|
Protein Sequence
|
MGSLISTCSFSSRVNTNARITDSSTWSPHLDQHHFIPTYRELNPAPTSSPTSPRTVTQSTGESFKSTADLLEEANNLLMTHMRRP |