Whitefly-associated begomovirus 3
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_003029135.1 |
| Isolate |
Guatemala |
| Release date |
2018/8/26 |
| Submitter |
Rosario,K., Seah,Y.M., Marr,C., Varsani,A., Kraberger,S., Stainton,D., Moriones,E., Polston,J.E., Duffy,S., Breitbart,M. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
CAATATTACCGGATGGCCGCGCGATTTTTTGCCCCCCCTACGTGGCGCAACGGAGGCCACTCGATGCCGCCCCCTCCTCTCTTTAATTTAAATTAAAGACCGTTACTTTCGTTATGACCAATGAAATTGCGTCTGACATGCTTAGATATTTGCGACAACTTGGGCCCGAAGTTGTTTTATGACCTTATAAAGGAAAGATATCTCGGCCCACTCTCTTTAATTCAAAATGCCCAAGCGGGACGCCCCATGGCGCACAATGGCGGGAACCTCGAAGGTAAGCCGCAACGCCAACTATTCTCCACGTGGCGGAAGTGGGCCGAAAGTGTCACGGGCCTCTGAATGGGTTAATAGGCCAATGTACAGGAAGCCCAGGATATACCGGACTATGCGGACGCCCGACGTTCCCAGGGGGTGTGAAGGCCCGTGCAAAGTCCAGTCCTACGAGCAACGTCACGATATTTCTCACGTTGGAAAGGTAATGTGTATATCCGATGTGACTCGTGGTAACGGTATAACCCACCGTGTGGGGAAACGTTTTTGTGTGAAGTCTGTGTACATTCTAGGTAAGATATGGATGGACGAGAACATCAAGTTGAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTTAGAGACAGACGACCCTATGGCACACCCATGGATTTTGGACAGGTGTTCAACATGTTCGACAACGAGCCGAGCACTGCTACGGTTAAGAACGATCTACGCGATCGTTTCCAAGTCATGCACAAGTTTTACGGTAAGGTCACCGGTGGACAATATGCCAGCAACGAGCAGGCTATTATACGGCGATTCTGGAGGGTCAACAACTACGTTGTCTACAACCACCAGGAAGCTGCGAAGTACGAGAATCATACGGAGAACGCTTTGCTATTGTACATGGCATGTACACATGCCTCTAACCCCGTGTATGCTACGCTTAAGATCCGGATCTATTTTTATGATTCGATCTTGAATTAATAAATTTTGAATTTTATTGCATGATTTTCAAGTACATAGCTTACATAAGACCTATCTGTTGCGAAACGAACAGCTCTAATTACATTATTAACTGAAATTACGCCTAATTGATCTAGATACATATTGACTAACTGTCTAAATCTAGCTAAATAAGTTGACCCAGAAGCTGTCATCGATGTCGTCCAGACCTGGAAATTCAGGTAAGCTTTGTGGAGATGCAACGCTCTCCTCAGGTTGTGGTTGAACCGTATTTGCAGATGATACACCCTGGTCCTGGTGTATAGCAGATCCTCTACTCCGTATATCTTGAAATAGAGGGGATTTGTTATCTCCCAGATATACACGCCATTCTCTGCCTGACGTACAGTGATGAGTTCCCCTGTGCGTGAATCCATGCCCGCTGCAACCTATGTGGAAGTATATGGTGCACCCGCACTGTAAATCAATGCGCCTCCTTCTAGTTGCCCTCTGCTTGGCTCTCCTGTGTGCCTTCTTTATAGAGGGGGGATTCGAGGGTGATGAAGACAGCATTCTTCAACGTCCAGTTTTTGAGGGATGCATTTTCCTCTTTCTCCAGGAAATCTTTATAGCTAGCACCCTCACCAGGATTGCAGAGCACGATTGATGGAATCCCCCCTTTAATTTGGACAGGCCTACCATATTTACAATTTGATTGCCAGTCTTTTTGGGCACCCAGGAGCTCTTTCCAATGCTTTAGCTTTAGGTAATGCGGTGCAACGTCATCAATGACGTTGTATTCAACTAAATTGGAATAGACACGAGCATTGAAATCGAGATGACCAGAAAGATAATTATGTGGGCCTAACGCACGTGCCCACATCGTCTTCCCCGTTCGACTATCACCTTCAACTATCAAACTAACTGGTCTCTCCGGCCGCGCAGCGGAACCTCTCCCAAAATAAGCATCTGACCATTCTTGCATCTCGTCAGGCACGTTAGTGAAAGAGGAGAGGGGAAACGGAGGAACCCATTGTTCCGGAGCCTTACTGAAAATCCTATCTAGGTTACTGGATAGGTTGTGATACTGGAAAAGAAACTTCTCCGGCAGTTTTTCTTTTATGATTTTCATGGCTTCCTCCTTTGTTCCAGCATTTAACGCCTCGGCGGCTGCGTCATTAGCTGTTTGCTGACCGCCTCTAGCACTTCTACCGTCGACCTGGAACAATCCCCATTCAATGGTGTCCCCCTCCTTCTCAACGTAGGACTTGACGTCGGAGCTCGATCTAGCACCCTGTATGTTTGGGTGGAATAGTTTTGACCTATTTGGGGACACCAGATCGAAGAATCGTTTATTCGCGCATTGGTATCTCCCTTCGAATTGGATGAGCACGTGTAGATGAGGTTGCCCATCTTGATGAAGCTCTCGACAAATCTTGATGAACTTCTTGTTTGTCGGAGTGTTTAGGTTTAATAGTTGAGAAAGTGCCTCTTCTTTAGTAAGAGAGCACTGAGAATAAGTAAGGAAATAATTCTTTGCGTTCCACTTCTTAGGCGGTGGCATATTTGTAATAAAACGCATACACCAATTGGTGTCTCGCTCAAAAGTCCATATGAATCGGTGTATAAGTGTCTTATTTATAGTAGAAGTTCCTTCGCTTAGATCTGCCACGTGGCGGCCATCCGCAC
Gene Information
|
NCBI Accession
|
YP_009508333.1
|
|
Location
|
227-982 |
|
Protein Name
|
capsid protein |
|
Coding Region
|
ATGCCCAAGCGGGACGCCCCATGGCGCACAATGGCGGGAACCTCGAAGGTAAGCCGCAACGCCAACTATTCTCCACGTGGCGGAAGTGGGCCGAAAGTGTCACGGGCCTCTGAATGGGTTAATAGGCCAATGTACAGGAAGCCCAGGATATACCGGACTATGCGGACGCCCGACGTTCCCAGGGGGTGTGAAGGCCCGTGCAAAGTCCAGTCCTACGAGCAACGTCACGATATTTCTCACGTTGGAAAGGTAATGTGTATATCCGATGTGACTCGTGGTAACGGTATAACCCACCGTGTGGGGAAACGTTTTTGTGTGAAGTCTGTGTACATTCTAGGTAAGATATGGATGGACGAGAACATCAAGTTGAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTTAGAGACAGACGACCCTATGGCACACCCATGGATTTTGGACAGGTGTTCAACATGTTCGACAACGAGCCGAGCACTGCTACGGTTAAGAACGATCTACGCGATCGTTTCCAAGTCATGCACAAGTTTTACGGTAAGGTCACCGGTGGACAATATGCCAGCAACGAGCAGGCTATTATACGGCGATTCTGGAGGGTCAACAACTACGTTGTCTACAACCACCAGGAAGCTGCGAAGTACGAGAATCATACGGAGAACGCTTTGCTATTGTACATGGCATGTACACATGCCTCTAACCCCGTGTATGCTACGCTTAAGATCCGGATCTATTTTTATGATTCGATCTTGAATTAA |
|
Protein Sequence
|
MPKRDAPWRTMAGTSKVSRNANYSPRGGSGPKVSRASEWVNRPMYRKPRIYRTMRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHKFYGKVTGGQYASNEQAIIRRFWRVNNYVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSILN |
|
NCBI Accession
|
YP_009508334.1
|
|
Location
|
979-1377 |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGTACGTCAGGCAGAGAATGGCGTGTATATCTGGGAGATAACAAATCCCCTCTATTTCAAGATATACGGAGTAGAGGATCTGCTATACACCAGGACCAGGGTGTATCATCTGCAAATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCTTACCTGAATTTCCAGGTCTGGACGACATCGATGACAGCTTCTGGGTCAACTTATTTAGCTAGATTTAGACAGTTAGTCAATATGTATCTAGATCAATTAGGCGTAATTTCAGTTAATAATGTAATTAGAGCTGTTCGTTTCGCAACAGATAGGTCTTATGTAAGCTATGTACTTGAAAATCATGCAATAAAATTCAAAATTTATTAA |
|
Protein Sequence
|
MDSRTGELITVRQAENGVYIWEITNPLYFKIYGVEDLLYTRTRVYHLQIRFNHNLRRALHLHKAYLNFQVWTTSMTASGSTYLARFRQLVNMYLDQLGVISVNNVIRAVRFATDRSYVSYVLENHAIKFKIY |
|
NCBI Accession
|
YP_009508335.1
|
|
Location
|
1124-1513 |
|
Protein Name
|
transactivator protein |
|
Coding Region
|
ATGCTGTCTTCATCACCCTCGAATCCCCCCTCTATAAAGAAGGCACACAGGAGAGCCAAGCAGAGGGCAACTAGAAGGAGGCGCATTGATTTACAGTGCGGGTGCACCATATACTTCCACATAGGTTGCAGCGGGCATGGATTCACGCACAGGGGAACTCATCACTGTACGTCAGGCAGAGAATGGCGTGTATATCTGGGAGATAACAAATCCCCTCTATTTCAAGATATACGGAGTAGAGGATCTGCTATACACCAGGACCAGGGTGTATCATCTGCAAATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCTTACCTGAATTTCCAGGTCTGGACGACATCGATGACAGCTTCTGGGTCAACTTATTTAGCTAG |
|
Protein Sequence
|
MLSSSPSNPPSIKKAHRRAKQRATRRRRIDLQCGCTIYFHIGCSGHGFTHRGTHHCTSGREWRVYLGDNKSPLFQDIRSRGSAIHQDQGVSSANTVQPQPEESVASPQSLPEFPGLDDIDDSFWVNLFS |
|
NCBI Accession
|
YP_009508336.1
|
|
Location
|
1440-2504 |
|
Protein Name
|
replication initiator protein |
|
Coding Region
|
ATGCCACCGCCTAAGAAGTGGAACGCAAAGAATTATTTCCTTACTTATTCTCAGTGCTCTCTTACTAAAGAAGAGGCACTTTCTCAACTATTAAACCTAAACACTCCGACAAACAAGAAGTTCATCAAGATTTGTCGAGAGCTTCATCAAGATGGGCAACCTCATCTACACGTGCTCATCCAATTCGAAGGGAGATACCAATGCGCGAATAAACGATTCTTCGATCTGGTGTCCCCAAATAGGTCAAAACTATTCCACCCAAACATACAGGGTGCTAGATCGAGCTCCGACGTCAAGTCCTACGTTGAGAAGGAGGGGGACACCATTGAATGGGGATTGTTCCAGGTCGACGGTAGAAGTGCTAGAGGCGGTCAGCAAACAGCTAATGACGCAGCCGCCGAGGCGTTAAATGCTGGAACAAAGGAGGAAGCCATGAAAATCATAAAAGAAAAACTGCCGGAGAAGTTTCTTTTCCAGTATCACAACCTATCCAGTAACCTAGATAGGATTTTCAGTAAGGCTCCGGAACAATGGGTTCCTCCGTTTCCCCTCTCCTCTTTCACTAACGTGCCTGACGAGATGCAAGAATGGTCAGATGCTTATTTTGGGAGAGGTTCCGCTGCGCGGCCGGAGAGACCAGTTAGTTTGATAGTTGAAGGTGATAGTCGAACGGGGAAGACGATGTGGGCACGTGCGTTAGGCCCACATAATTATCTTTCTGGTCATCTCGATTTCAATGCTCGTGTCTATTCCAATTTAGTTGAATACAACGTCATTGATGACGTTGCACCGCATTACCTAAAGCTAAAGCATTGGAAAGAGCTCCTGGGTGCCCAAAAAGACTGGCAATCAAATTGTAAATATGGTAGGCCTGTCCAAATTAAAGGGGGGATTCCATCAATCGTGCTCTGCAATCCTGGTGAGGGTGCTAGCTATAAAGATTTCCTGGAGAAAGAGGAAAATGCATCCCTCAAAAACTGGACGTTGAAGAATGCTGTCTTCATCACCCTCGAATCCCCCCTCTATAAAGAAGGCACACAGGAGAGCCAAGCAGAGGGCAACTAG |
|
Protein Sequence
|
MPPPKKWNAKNYFLTYSQCSLTKEEALSQLLNLNTPTNKKFIKICRELHQDGQPHLHVLIQFEGRYQCANKRFFDLVSPNRSKLFHPNIQGARSSSDVKSYVEKEGDTIEWGLFQVDGRSARGGQQTANDAAAEALNAGTKEEAMKIIKEKLPEKFLFQYHNLSSNLDRIFSKAPEQWVPPFPLSSFTNVPDEMQEWSDAYFGRGSAARPERPVSLIVEGDSRTGKTMWARALGPHNYLSGHLDFNARVYSNLVEYNVIDDVAPHYLKLKHWKELLGAQKDWQSNCKYGRPVQIKGGIPSIVLCNPGEGASYKDFLEKEENASLKNWTLKNAVFITLESPLYKEGTQESQAEGN |
|
NCBI Accession
|
YP_009508337.1
|
|
Location
|
2096-2353 |
|
Protein Name
|
AC4 |
|
Coding Region
|
ATGGGCAACCTCATCTACACGTGCTCATCCAATTCGAAGGGAGATACCAATGCGCGAATAAACGATTCTTCGATCTGGTGTCCCCAAATAGGTCAAAACTATTCCACCCAAACATACAGGGTGCTAGATCGAGCTCCGACGTCAAGTCCTACGTTGAGAAGGAGGGGGACACCATTGAATGGGGATTGTTCCAGGTCGACGGTAGAAGTGCTAGAGGCGGTCAGCAAACAGCTAATGACGCAGCCGCCGAGGCGTTAA |
|
Protein Sequence
|
MGNLIYTCSSNSKGDTNARINDSSIWCPQIGQNYSTQTYRVLDRAPTSSPTLRRRGTPLNGDCSRSTVEVLEAVSKQLMTQPPRR |