Whitefly-associated begomovirus 1

Basic Information

Genus Begomovirus
NCBI Assembly GCF_003029115.1
Isolate Guatemala
Release date 2018/8/26
Submitter Rosario,K., Seah,Y.M., Marr,C., Varsani,A., Kraberger,S., Stainton,D., Moriones,E., Polston,J.E., Duffy,S., Breitbart,M.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_038967
TAATATTACCGGATGGCCGCCCGCCCCGCCCGCTTTTTTTGACCCGTTCCTCGCGCGCAGACTGTATGGCCCCACATGCATAATGACAAAATCTACCGTCCAATCAGAACGCGCGTGTTAACCTTGATTGTCTACTCCTTCGCGCGTAAGTAGTCTATAAAGAGCTGCGCGCCCCACAAGACTCATTGTCTTTAACTCAAAATGCCGAAGCGGGAAGCCCCATGGCGCCTGGTGGAGACGCTCCCCAAGGTGAGTCGCAATGCCAACTACTCGCCCCTTCGCATATCGGGCCCAAAACCCGACAAGAGATCTGCCTGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATCTACCGGATGATGAGAGGGCCCGACATTCCAAAGGGCTGCGAAGGGCCTTGTAAGGTCCAGTCTTACGAGCAGCGTCATGATATCTCCCACGTGGGAAAGGTCCTTTGCGTGTCTGATATCACCCGTGGTAATGGGCTCACCCATCGCGTCGGTAAGCGTTTCTGTATCAAGTCCATCTATATATTGGGCAAGGTCTGGATGGACGACAACATCAAGCTGAAGAACCACACGAACAGCGTCATGTTCTGGCTAGTTAGGGATAGGAGACCTTATGGCACCCCTTTGGACTTTGGCCAGGTGTTCAACATGTTCGACAACGAGCCCAGCACTGCGACTGTTAAGAACGATCTCCGCGATCGTTTTCAAGTTATGCACAGGTTCTATGCCAAAGTCACAGGTGGTCAGTATGCCAGCAACGAGCAGGCTATAGTCAGGCGATTTTGGAAGATTAATAATTATGTTGTCTATAACCACCAGGAAGCTGGTAAATACGATAACCATACGGAGAACGCCCTTTTACTGTACATGGCATCTACGCATGCCTCTAACCCCGTGTATGCCACTTTGAAAATTCGGATCTATTTTTACGATTCGATATCCAATTAATAAAGTTTGAATTTTATTTCTTGAAATTCCAGTACATGACTTACATACGATCTGTCCGTTGCAAAATCAACGGCTCTAATGACATTGTTAATTCCTATTACGCCTAACTGATCTAAGTACAACATGACTAAATGTCTAAATCTAGCTAAATATGTCGTCCCAGAAGCTCGAAGCGACGTCGTCCAGACTTGGAAGTTCAGGAACGCCTTCTGTAGACCCAACTCCCTCCTGAGGTTGTGGTTGAACCGTATCTGGACGTGGTATATTCTTGTCCTGGTGTATGGTGGATCCTCTACTCTCTGTACCGTGAAATAGAGGGGATTGCGAATCTGCCAGATAAAAACGCCATTCTCTGCCTGAGGCGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGTCCCGCGCAGTCTATGTGGAAGTAGATTGAACAGCCGCACTGCAAATCGATCCTCCTCCTGCGAGGCCTGGACTTAGCTATCCTGTGCCTGGTCTTGATAGAGGGGGGAGTCGAGGAAGACGAATTTAGCATTGTGTAATGTCCAGGCCTTTAATGATGCGTTTTCCTCTTTGTCGAGAAAATCTTTATAGCTGGCCCCCTCACCAGGATTGCAGAGCACGATTGAGGGTATTCCGCCTTTAATTTGAACTGGCTTACCGTACTTGCAGTTGCTTTGCCAGTCCTTCTGGGCCCCAATCAGCTCTTTCCAGTGCTTCATCTTTAGATATTGGGGGCTGATGTCATCTATGACGTTATATGACGCATCATTTGAATAGACCCTCGAGTTGAAGTCCAGGTGTCCACTGAGATAGTTATGTGGTCCCAACGAACGAGCCCACATCGTCTTTCCAGTTCTCGAATCACCTTCAACTATCAAACTAATAGGTCTTTCCGGCCGCGCAGCGGCATCGACACCGAAAAACTCATCCGCCCATTCCAGCATTTCTTCCGGCACTCTGTTAAAGGATGATAATGGAAAAGGAGAAGCCCATGGTTCCGGAGGCTTTGAGAAAATCCTGTCCAGGTTACTGGACAAGTTGTGATATTGAAATAGGAACTCTTTTGGGAGCTTCTCCCTTATGATCTGCATTGCCTCCTCCTTAGACGCGGCATTCAATGCCTCCGCTGCGGCGTCGTTAGCCGTCTGTTGACCTCCTCTAGCAGATCTACCGTCGACCTGGAATTCACCCCATTCGATAACATCTCCATCTTTGTCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCGGTTTGGGGATACCAGGTCGAACTGTCTCTGATTCGTGCAGTTGTACTTCCCCTCGAATTGAAGAAGCACGTGGAGGTGAGGTTCCCCATTCTCGTGGAGTTCTCGACAGATTTTGATGAACTTCTTGTTCACAGGTGTTTGTATTTGCCTAATTTGCTCCAGTGCTTCTTCTTTTGGTAGACTGCAGTGCGGATAAGTGAGGAAATAGTTCTTGGCTTTAATTGAGAAAGAACCCTTTCGTGGCATTTTGGTAAATATGAGTGTTCCCCGATTGGGCTCTCTCACAAAACTCTGAGGAATTGGGGGAACTGGGGGAACATTTATAGTAAAAGCTCCTTCTCAGGATCTGGCAACACGTGGCGGCCATCCGTTA

Gene Information

NCBI Accession YP_009508323.1
Location 202-957
Protein Name capsid protein
Coding Region ATGCCGAAGCGGGAAGCCCCATGGCGCCTGGTGGAGACGCTCCCCAAGGTGAGTCGCAATGCCAACTACTCGCCCCTTCGCATATCGGGCCCAAAACCCGACAAGAGATCTGCCTGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATCTACCGGATGATGAGAGGGCCCGACATTCCAAAGGGCTGCGAAGGGCCTTGTAAGGTCCAGTCTTACGAGCAGCGTCATGATATCTCCCACGTGGGAAAGGTCCTTTGCGTGTCTGATATCACCCGTGGTAATGGGCTCACCCATCGCGTCGGTAAGCGTTTCTGTATCAAGTCCATCTATATATTGGGCAAGGTCTGGATGGACGACAACATCAAGCTGAAGAACCACACGAACAGCGTCATGTTCTGGCTAGTTAGGGATAGGAGACCTTATGGCACCCCTTTGGACTTTGGCCAGGTGTTCAACATGTTCGACAACGAGCCCAGCACTGCGACTGTTAAGAACGATCTCCGCGATCGTTTTCAAGTTATGCACAGGTTCTATGCCAAAGTCACAGGTGGTCAGTATGCCAGCAACGAGCAGGCTATAGTCAGGCGATTTTGGAAGATTAATAATTATGTTGTCTATAACCACCAGGAAGCTGGTAAATACGATAACCATACGGAGAACGCCCTTTTACTGTACATGGCATCTACGCATGCCTCTAACCCCGTGTATGCCACTTTGAAAATTCGGATCTATTTTTACGATTCGATATCCAATTAA
Protein Sequence MPKREAPWRLVETLPKVSRNANYSPLRISGPKPDKRSAWVNRPMYRKPRIYRMMRGPDIPKGCEGPCKVQSYEQRHDISHVGKVLCVSDITRGNGLTHRVGKRFCIKSIYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPYGTPLDFGQVFNMFDNEPSTATVKNDLRDRFQVMHRFYAKVTGGQYASNEQAIVRRFWKINNYVVYNHQEAGKYDNHTENALLLYMASTHASNPVYATLKIRIYFYDSISN

NCBI Accession YP_009508324.1
Location 954-1352
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCGCCTCAGGCAGAGAATGGCGTTTTTATCTGGCAGATTCGCAATCCCCTCTATTTCACGGTACAGAGAGTAGAGGATCCACCATACACCAGGACAAGAATATACCACGTCCAGATACGGTTCAACCACAACCTCAGGAGGGAGTTGGGTCTACAGAAGGCGTTCCTGAACTTCCAAGTCTGGACGACGTCGCTTCGAGCTTCTGGGACGACATATTTAGCTAGATTTAGACATTTAGTCATGTTGTACTTAGATCAGTTAGGCGTAATAGGAATTAACAATGTCATTAGAGCCGTTGATTTTGCAACGGACAGATCGTATGTAAGTCATGTACTGGAATTTCAAGAAATAAAATTCAAACTTTATTAA
Protein Sequence MDSRTGELITAPQAENGVFIWQIRNPLYFTVQRVEDPPYTRTRIYHVQIRFNHNLRRELGLQKAFLNFQVWTTSLRASGTTYLARFRHLVMLYLDQLGVIGINNVIRAVDFATDRSYVSHVLEFQEIKFKLY

NCBI Accession YP_009508325.1
Location 1099-1485
Protein Name transactivator protein
Coding Region ATGCTAAATTCGTCTTCCTCGACTCCCCCCTCTATCAAGACCAGGCACAGGATAGCTAAGTCCAGGCCTCGCAGGAGGAGGATCGATTTGCAGTGCGGCTGTTCAATCTACTTCCACATAGACTGCGCGGGACATGGATTCACGCACAGGGGAACTCATCACTGCGCCTCAGGCAGAGAATGGCGTTTTTATCTGGCAGATTCGCAATCCCCTCTATTTCACGGTACAGAGAGTAGAGGATCCACCATACACCAGGACAAGAATATACCACGTCCAGATACGGTTCAACCACAACCTCAGGAGGGAGTTGGGTCTACAGAAGGCGTTCCTGAACTTCCAAGTCTGGACGACGTCGCTTCGAGCTTCTGGGACGACATATTTAGCTAG
Protein Sequence MLNSSSSTPPSIKTRHRIAKSRPRRRRIDLQCGCSIYFHIDCAGHGFTHRGTHHCASGREWRFYLADSQSPLFHGTESRGSTIHQDKNIPRPDTVQPQPQEGVGSTEGVPELPSLDDVASSFWDDIFS

NCBI Accession YP_009508326.1
Location 1427-2482
Protein Name replication initiator protein
Coding Region ATGCCACGAAAGGGTTCTTTCTCAATTAAAGCCAAGAACTATTTCCTCACTTATCCGCACTGCAGTCTACCAAAAGAAGAAGCACTGGAGCAAATTAGGCAAATACAAACACCTGTGAACAAGAAGTTCATCAAAATCTGTCGAGAACTCCACGAGAATGGGGAACCTCACCTCCACGTGCTTCTTCAATTCGAGGGGAAGTACAACTGCACGAATCAGAGACAGTTCGACCTGGTATCCCCAAACCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGACAAAGATGGAGATGTTATCGAATGGGGTGAATTCCAGGTCGACGGTAGATCTGCTAGAGGAGGTCAACAGACGGCTAACGACGCCGCAGCGGAGGCATTGAATGCCGCGTCTAAGGAGGAGGCAATGCAGATCATAAGGGAGAAGCTCCCAAAAGAGTTCCTATTTCAATATCACAACTTGTCCAGTAACCTGGACAGGATTTTCTCAAAGCCTCCGGAACCATGGGCTTCTCCTTTTCCATTATCATCCTTTAACAGAGTGCCGGAAGAAATGCTGGAATGGGCGGATGAGTTTTTCGGTGTCGATGCCGCTGCGCGGCCGGAAAGACCTATTAGTTTGATAGTTGAAGGTGATTCGAGAACTGGAAAGACGATGTGGGCTCGTTCGTTGGGACCACATAACTATCTCAGTGGACACCTGGACTTCAACTCGAGGGTCTATTCAAATGATGCGTCATATAACGTCATAGATGACATCAGCCCCCAATATCTAAAGATGAAGCACTGGAAAGAGCTGATTGGGGCCCAGAAGGACTGGCAAAGCAACTGCAAGTACGGTAAGCCAGTTCAAATTAAAGGCGGAATACCCTCAATCGTGCTCTGCAATCCTGGTGAGGGGGCCAGCTATAAAGATTTTCTCGACAAAGAGGAAAACGCATCATTAAAGGCCTGGACATTACACAATGCTAAATTCGTCTTCCTCGACTCCCCCCTCTATCAAGACCAGGCACAGGATAGCTAA
Protein Sequence MPRKGSFSIKAKNYFLTYPHCSLPKEEALEQIRQIQTPVNKKFIKICRELHENGEPHLHVLLQFEGKYNCTNQRQFDLVSPNRSAHFHPNIQGAKSSSDVKSYIDKDGDVIEWGEFQVDGRSARGGQQTANDAAAEALNAASKEEAMQIIREKLPKEFLFQYHNLSSNLDRIFSKPPEPWASPFPLSSFNRVPEEMLEWADEFFGVDAAARPERPISLIVEGDSRTGKTMWARSLGPHNYLSGHLDFNSRVYSNDASYNVIDDISPQYLKMKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENASLKAWTLHNAKFVFLDSPLYQDQAQDS

NCBI Accession YP_009508327.1
Location 2068-2325
Protein Name AC4
Coding Region ATGGGGAACCTCACCTCCACGTGCTTCTTCAATTCGAGGGGAAGTACAACTGCACGAATCAGAGACAGTTCGACCTGGTATCCCCAAACCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGACAAAGATGGAGATGTTATCGAATGGGGTGAATTCCAGGTCGACGGTAGATCTGCTAGAGGAGGTCAACAGACGGCTAACGACGCCGCAGCGGAGGCATTGA
Protein Sequence MGNLTSTCFFNSRGSTTARIRDSSTWYPQTGQHISIRTFRELNPAPTSSPISTKMEMLSNGVNSRSTVDLLEEVNRRLTTPQRRH

References More References in PubMed

1

Circular DNA Enrichment Sequencing (CIDER-Seq) Facilitated the Discovery of a New World (NW) Begomovirus-Alphasatellite Complex Associated with Leaf Curl Disease of Tomato in Morelos, Mexico.

Guevara-Rivera EA, et al.  Viruses. 2026 Aug 30;18(9):950. doi: 10.3390/v18090950.

PMID: 42797783
2

Differences in gene expression in whitefly associated with CYSDV-infected and virus-free melon, and comparison with expression in whiteflies fed on ToCV- and TYLCV-infected tomato.

Kaur N, et al.  BMC Genomics. 2019 Aug 15;20(1):654. doi: 10.1186/s12864-019-5999-0.

PMID: 31416422