Catharanthus yellow mosaic virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000928135.1
Isolate Pakistan:Islamabad
Release date 2015/2/22
Submitter Mustujab,A., Tahir,M.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_025964
ACCGGATGGCCGCGATTTTTTTGTGGGCCCCACAAAGCACTAACTGACAAGGACATATGGACCAATGAGAATCGTTCTACATCGCCTCATTGTTTTGTGGTCCCCCTATATAATTACTTGCTGAGTAAGATTGTTGTAAACATGTGGGACCCACTAGTGAACGAGTTTCCMGAAACTGTTCATGGGTTTAGGTGCATGTTGGCAGTGAAATATCTCCAACTAGTTGCAGATACGTATTCTCCAGATACGGTGGGATACGATTTAATACGTGATTTAATTTCAGTAATAAGGGCCAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTGAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTTCCGAGGGGATGTGAAGGCCCATGCAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACCCACAGGGTTGGCAAGAGGTTCTGTGTTAAGTCCGTTTATGTTCTGGGCAAAATCTGGATGGATGAGAACATCAAGACTAAGAATCATACGAATAGTGTCATGTTTTTTCTTGTTAGGGATCGTAGACCCGTTGACAAGCCTCAAGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGATACCAGGTATTAAGGAAGTGGCACGCAACTGTGACAGGTGGTCTATATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACGCACGCCTCTAACCCTGTGTATGCTACATTGAAGATACGGATCTATTTTTATGATTCAGTATCGAATTAATAAATATTGAATTTTATATCATGATTCTCAATTACATTAATTGTGCCCTCAAGTACATCATATAATACATGTCTGAAAGCCTTAATACAATTATTTATACTAATTACGCCTAAACTATCTAAATATCGTAAAACTTGAGTCTTAAAGACTCTTAAGAAATGCCCAGTCTGAGGATGTAAACGAGTGTGGATCCTCAGGCCCAAGTAACACTTCATTATCCCCAGTCTCTTCCTGAGGTTGTGATTGAACTGGACCCTGATGTTGATGATGTCGTGGTTCATGTTGAGTGGCCTGCTGTGGTGTTCTGTTATCTTGAAGTAGAGGGGATTTTGAATCTCCCAGATATACACGCCATTCTCTGCTTGAGCTGCAGTGATGGATTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTTGATGTGTACGTAGTATGAGCACCCACAGTTTAGATCAACCCTCTTACGCCGGATGGCTCTACGCTTAGCAGCTCTGTGTTGGACCTTGATTGGAACCTGAGTATAGTGGGCCTTCGAGGGAGATGAAGGTTGCATTTTTTAGTGCCCAGGCTTTCAATGCGCTATTCTTCTCCTCGTCCAGGTACTCCTTATAGCTGGAATTGGGCCCAGGATTGCAGAGGAAGATAGTGGGAATACCACCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGGTAGTGGGGATCAACGTCATCAATGACGTTGTACCAGGCCTCATTATTGTAGACCTTTGGGCTAAGGTCTAGATGCCCACACAGATAATTATGTGGTCCAAGTGATCTGGCCCACATCGTCTTTCCCGTTCTACTGTCACCCTCTATGACTATACTTATGGGTCTCAAAGGCCGCGCAGCGGCACTGACAACATTCTCGGCAGCCCACTCCTCAAGTTCTTCGGGAACTTGATCAAAGGAAGAAGACGAAAAAGGAGAAACATAAACCTCTACAGGAGGTGTAAAAATCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTTTCCCTAATTATTGCTAAAGCTGCGTCAGCAGAACCGGCATTTAACGCCTCTGCTGCAACATCATTAGCTGTCTGTTGACCTCCTCGAGCAGATCTTCCATCGATCTGAAACTCACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCAGAGCTGGACTTAGCTCCCTGGAAGTTTGGGTGGAATTGAGTTGAGGTATAGGGGTGAGTGACATCAAAATGTCTGGGGTTTCTGAACTGGGATTTACCTTTGAACTGGATGAGGGCATGGATATGCAGAGACCCATCTTGGTGTTTTTCTTGTGACACTCTGATAAATAATTTATCAGAAGGACAGGAAATGTTTTTAAGGAGTTCGAGCATTTGCTCCTTTGGTAATGGACATTTCGGATAAGTGAGGAAGATATTTTTGGCCTTCACTTGGAACTGGTGTGTACGAGGCATAATGAATTGGGTGCTCTCTAAAACTCTATGGAATGGGGTGCTTTGGGTGCCTATTTATACCGAGCCCCCAAATGGCATATTCGTAATTTCGAAATAACTTTCGAAATCCTCACGCTCCAAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009112872.1
Location 142-507
Gene Name V2
Protein Name pre coat protein
Coding Region ATGTGGGACCCACTAGTGAACGAGTTTCCMGAAACTGTTCATGGGTTTAGGTGCATGTTGGCAGTGAAATATCTCCAACTAGTTGCAGATACGTATTCTCCAGATACGGTGGGATACGATTTAATACGTGATTTAATTTCAGTAATAAGGGCCAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTGAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTTCCGAGGGGATGTGA
Protein Sequence MWDPLVNEFPETVHGFRCMLAVKYLQLVADTYSPDTVGYDLIRDLISVIRARNYVEATSRYNHFHARLEGTPPSELRQPICEPCCCPHCPRHKGKGMGEQAHEQKAQDVQDVQKSRCSEGM

NCBI Accession YP_009112873.1
Location 302-1072
Gene Name CP
Protein Name Coat Protein
Coding Region ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTGAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTTCCGAGGGGATGTGAAGGCCCATGCAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACCCACAGGGTTGGCAAGAGGTTCTGTGTTAAGTCCGTTTATGTTCTGGGCAAAATCTGGATGGATGAGAACATCAAGACTAAGAATCATACGAATAGTGTCATGTTTTTTCTTGTTAGGGATCGTAGACCCGTTGACAAGCCTCAAGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGATACCAGGTATTAAGGAAGTGGCACGCAACTGTGACAGGTGGTCTATATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACGCACGCCTCTAACCCTGTGTATGCTACATTGAAGATACGGATCTATTTTTATGATTCAGTATCGAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGLYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_009112874.1
Location 1069-1473
Gene Name REn
Protein Name Replication Enhancer Protein
Coding Region ATGGATTCACGCACAGGGGAATCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATTCAAAATCCCCTCTACTTCAAGATAACAGAACACCACAGCAGGCCACTCAACATGAACCACGACATCATCAACATCAGGGTCCAGTTCAATCACAACCTCAGGAAGAGACTGGGGATAATGAAGTGTTACTTGGGCCTGAGGATCCACACTCGTTTACATCCTCAGACTGGGCATTTCTTAAGAGTCTTTAAGACTCAAGTTTTACGATATTTAGATAGTTTAGGCGTAATTAGTATAAATAATTGTATTAAGGCTTTCAGACATGTATTATATGATGTACTTGAGGGCACAATTAATGTAATTGAGAATCATGATATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGESITAAQAENGVYIWEIQNPLYFKITEHHSRPLNMNHDIINIRVQFNHNLRKRLGIMKCYLGLRIHTRLHPQTGHFLRVFKTQVLRYLDSLGVISINNCIKAFRHVLYDVLEGTINVIENHDIKFNIY

NCBI Accession YP_009112875.1
Location 1214-1621
Gene Name TrAP
Protein Name Transactivator Protein
Coding Region ATGCAACCTTCATCTCCCTCGAAGGCCCACTATACTCAGGTTCCAATCAAGGTCCAACACAGAGCTGCTAAGCGTAGAGCCATCCGGCGTAAGAGGGTTGATCTAAACTGTGGGTGCTCATACTACGTACACATCAACTGCCACAACCATGGATTCACGCACAGGGGAATCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATTCAAAATCCCCTCTACTTCAAGATAACAGAACACCACAGCAGGCCACTCAACATGAACCACGACATCATCAACATCAGGGTCCAGTTCAATCACAACCTCAGGAAGAGACTGGGGATAATGAAGTGTTACTTGGGCCTGAGGATCCACACTCGTTTACATCCTCAGACTGGGCATTTCTTAAGAGTCTTTAA
Protein Sequence MQPSSPSKAHYTQVPIKVQHRAAKRRAIRRKRVDLNCGCSYYVHINCHNHGFTHRGIHHCSSSREWRVYLGDSKSPLLQDNRTPQQATQHEPRHHQHQGPVQSQPQEETGDNEVLLGPEDPHSFTSSDWAFLKSL

NCBI Accession YP_009112876.1
Location 1551-2609
Gene Name Rep
Protein Name replication associated Protein
Coding Region ATGCCTCGTACACACCAGTTCCAAGTGAAGGCCAAAAATATCTTCCTCACTTATCCGAAATGTCCATTACCAAAGGAGCAAATGCTCGAACTCCTTAAAAACATTTCCTGTCCTTCTGATAAATTATTTATCAGAGTGTCACAAGAAAAACACCAAGATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAAGGTAAATCCCAGTTCAGAAACCCCAGACATTTTGATGTCACTCACCCCTATACCTCAACTCAATTCCACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTGAGTTTCAGATCGATGGAAGATCTGCTCGAGGAGGTCAACAGACAGCTAATGATGTTGCAGCAGAGGCGTTAAATGCCGGTTCTGCTGACGCAGCTTTAGCAATAATTAGGGAAAAACTCCCTAAAGATTTTATTTTTCAATATCATAATTTAAAATGTAATTTAGATAGGATTTTTACACCTCCTGTAGAGGTTTATGTTTCTCCTTTTTCGTCTTCTTCCTTTGATCAAGTTCCCGAAGAACTTGAGGAGTGGGCTGCCGAGAATGTTGTCAGTGCCGCTGCGCGGCCTTTGAGACCCATAAGTATAGTCATAGAGGGTGACAGTAGAACGGGAAAGACGATGTGGGCCAGATCACTTGGACCACATAATTATCTGTGTGGGCATCTAGACCTTAGCCCAAAGGTCTACAATAATGAGGCCTGGTACAACGTCATTGATGACGTTGATCCCCACTACCTAAAGCACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGGAAGCCAGTTCAAATTAAAGGTGGTATTCCCACTATCTTCCTCTGCAATCCTGGGCCCAATTCCAGCTATAAGGAGTACCTGGACGAGGAGAAGAATAGCGCATTGAAAGCCTGGGCACTAAAAAATGCAACCTTCATCTCCCTCGAAGGCCCACTATACTCAGGTTCCAATCAAGGTCCAACACAGAGCTGCTAA
Protein Sequence MPRTHQFQVKAKNIFLTYPKCPLPKEQMLELLKNISCPSDKLFIRVSQEKHQDGSLHIHALIQFKGKSQFRNPRHFDVTHPYTSTQFHPNFQGAKSSSDVKSYIEKDGDYIDWGEFQIDGRSARGGQQTANDVAAEALNAGSADAALAIIREKLPKDFIFQYHNLKCNLDRIFTPPVEVYVSPFSSSSFDQVPEELEEWAAENVVSAAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNSALKAWALKNATFISLEGPLYSGSNQGPTQSC

NCBI Accession YP_009112877.1
Location 2195-2452
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAAGGTAAATCCCAGTTCAGAAACCCCAGACATTTTGATGTCACTCACCCCTATACCTCAACTCAATTCCACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTGAGTTTCAGATCGATGGAAGATCTGCTCGAGGAGGTCAACAGACAGCTAATGATGTTGCAGCAGAGGCGTTAA
Protein Sequence MGLCISMPSSSSKVNPSSETPDILMSLTPIPQLNSTQTSRELSPALMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMLQQRR

References More References in PubMed

1

New Record of Catharanthus yellow mosaic virus and a Betasatellite Associated with Lethal Leaf Yellowing of Kalmegh (Andrographis paniculata) in Northern India.

Khan A, et al.  Plant Dis. 2015 Feb;99(2):292. doi: 10.1094/PDIS-08-14-0862-PDN.

PMID: 30699593
2

A Virus Related to Clover Yellow Mosaic Virus Found East of the Mississippi River in Verbena canadensis in Florida.

Baker CA, et al.  Plant Dis. 2004 Feb;88(2):223. doi: 10.1094/PDIS.2004.88.2.223B.

PMID: 30812442
3

Identification of a new begomovirus infecting Duranta repens in Pakistan.

Anwar S, et al.  Arch Virol. 2018 Mar;163(3):809-813. doi: 10.1007/s00705-017-3672-y. Epub 2017 Dec 9.

PMID: 29224128
4

First Report of a Tospovirus on Sunflower (Helianthus annus L.) from India.

Subbaiah KV, et al.  Plant Dis. 2000 Dec;84(12):1343. doi: 10.1094/PDIS.2000.84.12.1343B.

PMID: 30831882
5

Complete nucleotide sequences of two begomoviruses infecting Madagascar periwinkle (Catharanthus roseus) from Pakistan.

Ilyas M, et al.  Arch Virol. 2013 Feb;158(2):505-10. doi: 10.1007/s00705-012-1498-1. Epub 2012 Oct 12.

PMID: 23065111
6

First Report of Phytoplasma Infection in Freesia Plant.

Kamińska M, et al.  Plant Dis. 2001 Mar;85(3):336. doi: 10.1094/PDIS.2001.85.3.336B.

PMID: 30832059