Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000928135.1 |
Isolate | Pakistan:Islamabad |
Release date | 2015/2/22 |
Submitter | Mustujab,A., Tahir,M. |
Host | |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_009112872.1 |
---|---|
Location | 142-507 |
Gene Name | V2 |
Protein Name | pre coat protein |
Coding Region | ATGTGGGACCCACTAGTGAACGAGTTTCCMGAAACTGTTCATGGGTTTAGGTGCATGTTGGCAGTGAAATATCTCCAACTAGTTGCAGATACGTATTCTCCAGATACGGTGGGATACGATTTAATACGTGATTTAATTTCAGTAATAAGGGCCAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTGAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTTCCGAGGGGATGTGA |
Protein Sequence | MWDPLVNEFPETVHGFRCMLAVKYLQLVADTYSPDTVGYDLIRDLISVIRARNYVEATSRYNHFHARLEGTPPSELRQPICEPCCCPHCPRHKGKGMGEQAHEQKAQDVQDVQKSRCSEGM |
NCBI Accession | YP_009112873.1 |
---|---|
Location | 302-1072 |
Gene Name | CP |
Protein Name | Coat Protein |
Coding Region | ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTGAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTTCCGAGGGGATGTGAAGGCCCATGCAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACCCACAGGGTTGGCAAGAGGTTCTGTGTTAAGTCCGTTTATGTTCTGGGCAAAATCTGGATGGATGAGAACATCAAGACTAAGAATCATACGAATAGTGTCATGTTTTTTCTTGTTAGGGATCGTAGACCCGTTGACAAGCCTCAAGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGATACCAGGTATTAAGGAAGTGGCACGCAACTGTGACAGGTGGTCTATATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACGCACGCCTCTAACCCTGTGTATGCTACATTGAAGATACGGATCTATTTTTATGATTCAGTATCGAATTAA |
Protein Sequence | MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGLYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN |
NCBI Accession | YP_009112874.1 |
---|---|
Location | 1069-1473 |
Gene Name | REn |
Protein Name | Replication Enhancer Protein |
Coding Region | ATGGATTCACGCACAGGGGAATCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATTCAAAATCCCCTCTACTTCAAGATAACAGAACACCACAGCAGGCCACTCAACATGAACCACGACATCATCAACATCAGGGTCCAGTTCAATCACAACCTCAGGAAGAGACTGGGGATAATGAAGTGTTACTTGGGCCTGAGGATCCACACTCGTTTACATCCTCAGACTGGGCATTTCTTAAGAGTCTTTAAGACTCAAGTTTTACGATATTTAGATAGTTTAGGCGTAATTAGTATAAATAATTGTATTAAGGCTTTCAGACATGTATTATATGATGTACTTGAGGGCACAATTAATGTAATTGAGAATCATGATATAAAATTCAATATTTATTAA |
Protein Sequence | MDSRTGESITAAQAENGVYIWEIQNPLYFKITEHHSRPLNMNHDIINIRVQFNHNLRKRLGIMKCYLGLRIHTRLHPQTGHFLRVFKTQVLRYLDSLGVISINNCIKAFRHVLYDVLEGTINVIENHDIKFNIY |
NCBI Accession | YP_009112875.1 |
---|---|
Location | 1214-1621 |
Gene Name | TrAP |
Protein Name | Transactivator Protein |
Coding Region | ATGCAACCTTCATCTCCCTCGAAGGCCCACTATACTCAGGTTCCAATCAAGGTCCAACACAGAGCTGCTAAGCGTAGAGCCATCCGGCGTAAGAGGGTTGATCTAAACTGTGGGTGCTCATACTACGTACACATCAACTGCCACAACCATGGATTCACGCACAGGGGAATCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATTCAAAATCCCCTCTACTTCAAGATAACAGAACACCACAGCAGGCCACTCAACATGAACCACGACATCATCAACATCAGGGTCCAGTTCAATCACAACCTCAGGAAGAGACTGGGGATAATGAAGTGTTACTTGGGCCTGAGGATCCACACTCGTTTACATCCTCAGACTGGGCATTTCTTAAGAGTCTTTAA |
Protein Sequence | MQPSSPSKAHYTQVPIKVQHRAAKRRAIRRKRVDLNCGCSYYVHINCHNHGFTHRGIHHCSSSREWRVYLGDSKSPLLQDNRTPQQATQHEPRHHQHQGPVQSQPQEETGDNEVLLGPEDPHSFTSSDWAFLKSL |
NCBI Accession | YP_009112876.1 |
---|---|
Location | 1551-2609 |
Gene Name | Rep |
Protein Name | replication associated Protein |
Coding Region | ATGCCTCGTACACACCAGTTCCAAGTGAAGGCCAAAAATATCTTCCTCACTTATCCGAAATGTCCATTACCAAAGGAGCAAATGCTCGAACTCCTTAAAAACATTTCCTGTCCTTCTGATAAATTATTTATCAGAGTGTCACAAGAAAAACACCAAGATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAAGGTAAATCCCAGTTCAGAAACCCCAGACATTTTGATGTCACTCACCCCTATACCTCAACTCAATTCCACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTGAGTTTCAGATCGATGGAAGATCTGCTCGAGGAGGTCAACAGACAGCTAATGATGTTGCAGCAGAGGCGTTAAATGCCGGTTCTGCTGACGCAGCTTTAGCAATAATTAGGGAAAAACTCCCTAAAGATTTTATTTTTCAATATCATAATTTAAAATGTAATTTAGATAGGATTTTTACACCTCCTGTAGAGGTTTATGTTTCTCCTTTTTCGTCTTCTTCCTTTGATCAAGTTCCCGAAGAACTTGAGGAGTGGGCTGCCGAGAATGTTGTCAGTGCCGCTGCGCGGCCTTTGAGACCCATAAGTATAGTCATAGAGGGTGACAGTAGAACGGGAAAGACGATGTGGGCCAGATCACTTGGACCACATAATTATCTGTGTGGGCATCTAGACCTTAGCCCAAAGGTCTACAATAATGAGGCCTGGTACAACGTCATTGATGACGTTGATCCCCACTACCTAAAGCACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGGAAGCCAGTTCAAATTAAAGGTGGTATTCCCACTATCTTCCTCTGCAATCCTGGGCCCAATTCCAGCTATAAGGAGTACCTGGACGAGGAGAAGAATAGCGCATTGAAAGCCTGGGCACTAAAAAATGCAACCTTCATCTCCCTCGAAGGCCCACTATACTCAGGTTCCAATCAAGGTCCAACACAGAGCTGCTAA |
Protein Sequence | MPRTHQFQVKAKNIFLTYPKCPLPKEQMLELLKNISCPSDKLFIRVSQEKHQDGSLHIHALIQFKGKSQFRNPRHFDVTHPYTSTQFHPNFQGAKSSSDVKSYIEKDGDYIDWGEFQIDGRSARGGQQTANDVAAEALNAGSADAALAIIREKLPKDFIFQYHNLKCNLDRIFTPPVEVYVSPFSSSSFDQVPEELEEWAAENVVSAAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNSALKAWALKNATFISLEGPLYSGSNQGPTQSC |
NCBI Accession | YP_009112877.1 |
---|---|
Location | 2195-2452 |
Gene Name | C4 |
Protein Name | C4 protein |
Coding Region | ATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAAGGTAAATCCCAGTTCAGAAACCCCAGACATTTTGATGTCACTCACCCCTATACCTCAACTCAATTCCACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTGAGTTTCAGATCGATGGAAGATCTGCTCGAGGAGGTCAACAGACAGCTAATGATGTTGCAGCAGAGGCGTTAA |
Protein Sequence | MGLCISMPSSSSKVNPSSETPDILMSLTPIPQLNSTQTSRELSPALMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMLQQRR |
1 |
Khan A, et al. Plant Dis. 2015 Feb;99(2):292. doi: 10.1094/PDIS-08-14-0862-PDN. PMID: 30699593 |
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2 |
Baker CA, et al. Plant Dis. 2004 Feb;88(2):223. doi: 10.1094/PDIS.2004.88.2.223B. PMID: 30812442 |
3 |
Identification of a new begomovirus infecting Duranta repens in Pakistan. Anwar S, et al. Arch Virol. 2018 Mar;163(3):809-813. doi: 10.1007/s00705-017-3672-y. Epub 2017 Dec 9. PMID: 29224128 |
4 |
First Report of a Tospovirus on Sunflower (Helianthus annus L.) from India. Subbaiah KV, et al. Plant Dis. 2000 Dec;84(12):1343. doi: 10.1094/PDIS.2000.84.12.1343B. PMID: 30831882 |
5 |
Ilyas M, et al. Arch Virol. 2013 Feb;158(2):505-10. doi: 10.1007/s00705-012-1498-1. Epub 2012 Oct 12. PMID: 23065111 |
6 |
First Report of Phytoplasma Infection in Freesia Plant. Kamińska M, et al. Plant Dis. 2001 Mar;85(3):336. doi: 10.1094/PDIS.2001.85.3.336B. PMID: 30832059 |