Vinca leaf curl virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_001430335.1 |
| Isolate |
India |
| Release date |
2015/11/3 |
| Submitter |
Nehra,C., Sekhsaria,C., Gaur,R.K. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCGGCGATTAATTTTTTTGGGGCCCCGACAAAGCACTAACTGTCAATGTCATGTGGTGGTTTGAGAATGGTTCCTCGTAGCCTAATTGTTTTGTGTTCCGGTCTATAAAGTAAGTGCGCAAGCTGTGTTTCACATTCACCATGTGGGATCCGTTATTGAATGAGTTTCCCGAAACCGTTCAAGGTTTTTGGAGTATGTTAGCCGTTATTTATCTGCAGTTAGTAGAAAATACCTATTCCGGAGATACTCTGGGATACGATTTAATTAGCCATTTGATTGCAGTAATAAGGGCCAGGAATTATGTCGAAGCGACCAGTAGATATAATCAAAACCACGCCCGCATCGATGGTACGTTGCCGTCTCTTCTTCGACAGCTCATATGTGAGTCGTGTTGCTGCCGCGATTGTCCGCGGCACCAAAGCTTTTGCATCGGCGTTCAGGTCCATGAACAGAGAGCGGAGGATGTCCAGGATTTACAGAAGTCGAGATGTCGCTAGAGGATTTGAAGGCTTATGTAAGGTCGAGTCGTTGGAGTCCAGACATGATATGGGGCACATTGGGTTTGTCATGTGTGTTAGTGAAAACCCTCGTCCTGTTGGACTGACCCACAGGGTTGGCAAGAGGTTCTGTGTTAAGTCCGTTTATGTTCTGGGCTTGTTCTGGACGGACCAGTTCAACAAGAGTAAGAAACATAGGAATAGTCTTATGTTGTTTCTTGTTAGGGATCGTAGGCCTGTTGATAAGCCTCAAGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGATACCAGGTATTGAGGAAGTGGCATGCAACTGTCACCGGTGGACAGTACGCTTCAAAGGAACAAGCTCTCGTGAAGAAGTTTATTAGAGTTAATAATTATGTTGTTTATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATACTGAGAATGCTTTGATGTTGTATATGGCGTGTACGCACGCCTCTAACCCAGTGTATGCTACTCTGAAAATACGGATCTATTTTTATGATTCCGTAACAAATTAATAAATATTAAATTTTATTGAATAAGATTGTTCTATATATACAATGTGTTGTAATACATTCCATAATACATGATCAACTGATCTGATTACATTATTAATACTGATAACTCCTAAATTATTTAAGTATTTAAGAACTTGAGTCTTAAAGACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCATCCAGATTCGGAAGGCTAGGAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGGACAGTGATGATGTCTTGGTTCATGAGGAATGGTCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAATCTCCCAGATAAATACGCCATTCTGTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGTGGCAGGCTAATGCTATGAAGTATGAACACCCACACGGGAGATCAACACGACGACGCCTGGTCCCCTTCTTGGCTAGCCTGTGCTGCACTTTGATTGGAACCTGAGTAGAGTGGGCCTTCGAGGGTGATGAAGGTCGCATTATGTATAGCCCACGACCTCAGTGCTGAGTTCTTTTCCTCATCGAGGTATTCTTTATAGCTGGAATTGGGCCCAGGATTGCATAGGAAGATAGTGGGTATACCTCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCGTTGCTTTCTACCTTAGGACTAAGGTCTAGATGACCACACAAATAATTGTGTGGACCCAAAGACCTAGCCCACATGGTCTTCCCCGTTCGACTATCACCTTCTACCACAATACTCATGGGTCTCAATGGCCGCGCAGCGGCATCCACCACGTTCTCAGCAGCCCAGACTTCAAGTTCTTCCGGAACGGGAAAAAAAGAAGAAGATAAAAAAGGCGAAACATAAACCTCCAACGGAGGACTAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGAAGTACATAATCTTTTGGTGCTAATTCTTTAATTACTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGCGCTGCGGCGTAAGCGTCGTTGGCTGACTGTTGTCCCCCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACATCTGAGCTTGACTTAGCTCCCTGAATGGTCGGATGCATATGTGCTGGCCTGGTTCGGCATACCAGGTCGAAGAATCTGTTATTCGTGCAGACGAATTTGCCCTCGAACTGGATGAGCACATGGAGATGAGGGCTCCCATCTTCGTGTAACCCTCTGCAGAGTTTGATGTATTTTTTATTCGCGAGGGTGTGTTTCCCTTCAATTTCCCTTTGAGCAACCTCTTTAGTGAGTGAGCACTGTGGATAAGTGATGAAATAATTTTTGGCTTGTACTTTAAAACCCTTAATTTGGAATTGGTTTTGACGTGGCATATTGAATTGGGTGCTCTCAAAACTCTGAGTTCTATGTATCGGTGTACTGGAGTCCTATATATATGGAGACTCTAATGGCATAATGGTAATAAACGAACTTTAATTTGAAATTCAAAATAAAAGGCTAAACGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_009175008.1
|
|
Location
|
149-505 |
|
Gene Name
|
AV2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGATCCGTTATTGAATGAGTTTCCCGAAACCGTTCAAGGTTTTTGGAGTATGTTAGCCGTTATTTATCTGCAGTTAGTAGAAAATACCTATTCCGGAGATACTCTGGGATACGATTTAATTAGCCATTTGATTGCAGTAATAAGGGCCAGGAATTATGTCGAAGCGACCAGTAGATATAATCAAAACCACGCCCGCATCGATGGTACGTTGCCGTCTCTTCTTCGACAGCTCATATGTGAGTCGTGTTGCTGCCGCGATTGTCCGCGGCACCAAAGCTTTTGCATCGGCGTTCAGGTCCATGAACAGAGAGCGGAGGATGTCCAGGATTTACAGAAGTCGAGATGTCGCTAG |
|
Protein Sequence
|
MWDPLLNEFPETVQGFWSMLAVIYLQLVENTYSGDTLGYDLISHLIAVIRARNYVEATSRYNQNHARIDGTLPSLLRQLICESCCCRDCPRHQSFCIGVQVHEQRAEDVQDLQKSRCR |
|
NCBI Accession
|
YP_009175009.1
|
|
Location
|
309-1079 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCAGTAGATATAATCAAAACCACGCCCGCATCGATGGTACGTTGCCGTCTCTTCTTCGACAGCTCATATGTGAGTCGTGTTGCTGCCGCGATTGTCCGCGGCACCAAAGCTTTTGCATCGGCGTTCAGGTCCATGAACAGAGAGCGGAGGATGTCCAGGATTTACAGAAGTCGAGATGTCGCTAGAGGATTTGAAGGCTTATGTAAGGTCGAGTCGTTGGAGTCCAGACATGATATGGGGCACATTGGGTTTGTCATGTGTGTTAGTGAAAACCCTCGTCCTGTTGGACTGACCCACAGGGTTGGCAAGAGGTTCTGTGTTAAGTCCGTTTATGTTCTGGGCTTGTTCTGGACGGACCAGTTCAACAAGAGTAAGAAACATAGGAATAGTCTTATGTTGTTTCTTGTTAGGGATCGTAGGCCTGTTGATAAGCCTCAAGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGATACCAGGTATTGAGGAAGTGGCATGCAACTGTCACCGGTGGACAGTACGCTTCAAAGGAACAAGCTCTCGTGAAGAAGTTTATTAGAGTTAATAATTATGTTGTTTATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATACTGAGAATGCTTTGATGTTGTATATGGCGTGTACGCACGCCTCTAACCCAGTGTATGCTACTCTGAAAATACGGATCTATTTTTATGATTCCGTAACAAATTAA |
|
Protein Sequence
|
MSKRPVDIIKTTPASMVRCRLFFDSSYVSRVAAAIVRGTKAFASAFRSMNRERRMSRIYRSRDVARGFEGLCKVESLESRHDMGHIGFVMCVSENPRPVGLTHRVGKRFCVKSVYVLGLFWTDQFNKSKKHRNSLMLFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
|
NCBI Accession
|
YP_009175010.1
|
|
Location
|
1076-1480 |
|
Gene Name
|
C3 |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAATGGCGTATTTATCTGGGAGATTCAAAATCCCCTCTATTTCAAGATAACAGAGCACCACAACAGACCATTCCTCATGAACCAAGACATCATCACTGTCCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAAGACTCAAGTTCTTAAATACTTAAATAATTTAGGAGTTATCAGTATTAATAATGTAATCAGATCAGTTGATCATGTATTATGGAATGTATTACAACACATTGTATATATAGAACAATCTTATTCAATAAAATTTAATATTTATTAA |
|
Protein Sequence
|
MDSRTGELITAAQAQNGVFIWEIQNPLYFKITEHHNRPFLMNQDIITVQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLNNLGVISINNVIRSVDHVLWNVLQHIVYIEQSYSIKFNIY |
|
NCBI Accession
|
YP_009175011.1
|
|
Location
|
1221-1625 |
|
Gene Name
|
C2 |
|
Protein Name
|
transcription activator protein |
|
Coding Region
|
ATGCGACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGGCGTCGTCGTGTTGATCTCCCGTGTGGGTGTTCATACTTCATAGCATTAGCCTGCCACAACCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAATGGCGTATTTATCTGGGAGATTCAAAATCCCCTCTATTTCAAGATAACAGAGCACCACAACAGACCATTCCTCATGAACCAAGACATCATCACTGTCCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAA |
|
Protein Sequence
|
MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALACHNHGFTHRGTHHCSSSTEWRIYLGDSKSPLFQDNRAPQQTIPHEPRHHHCPDTVQSQPEESVGDTQMFPSLPNLDDLTASDWSFLKGL |
|
NCBI Accession
|
YP_009175012.1
|
|
Location
|
1528-2628 |
|
Gene Name
|
C1 |
|
Protein Name
|
replication initiation protein |
|
Coding Region
|
ATGCCACGTCAAAACCAATTCCAAATTAAGGGTTTTAAAGTACAAGCCAAAAATTATTTCATCACTTATCCACAGTGCTCACTCACTAAAGAGGTTGCTCAAAGGGAAATTGAAGGGAAACACACCCTCGCGAATAAAAAATACATCAAACTCTGCAGAGGGTTACACGAAGATGGGAGCCCTCATCTCCATGTGCTCATCCAGTTCGAGGGCAAATTCGTCTGCACGAATAACAGATTCTTCGACCTGGTATGCCGAACCAGGCCAGCACATATGCATCCGACCATTCAGGGAGCTAAGTCAAGCTCAGATGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGACAACAGTCAGCCAACGACGCTTACGCCGCAGCGCTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTAATTAAAGAATTAGCACCAAAAGATTATGTACTTCAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTAGTCCTCCGTTGGAGGTTTATGTTTCGCCTTTTTTATCTTCTTCTTTTTTTCCCGTTCCGGAAGAACTTGAAGTCTGGGCTGCTGAGAACGTGGTGGATGCCGCTGCGCGGCCATTGAGACCCATGAGTATTGTGGTAGAAGGTGATAGTCGAACGGGGAAGACCATGTGGGCTAGGTCTTTGGGTCCACACAATTATTTGTGTGGTCATCTAGACCTTAGTCCTAAGGTAGAAAGCAACGAGGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGAAAGCCAGTTCAAATTAAAGGAGGTATACCCACTATCTTCCTATGCAATCCTGGGCCCAATTCCAGCTATAAAGAATACCTCGATGAGGAAAAGAACTCAGCACTGAGGTCGTGGGCTATACATAATGCGACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGGCGTCGTCGTGTTGA |
|
Protein Sequence
|
MPRQNQFQIKGFKVQAKNYFITYPQCSLTKEVAQREIEGKHTLANKKYIKLCRGLHEDGSPHLHVLIQFEGKFVCTNNRFFDLVCRTRPAHMHPTIQGAKSSSDVKSYLEKDGDTLDWGEFQIDGRSARGGQQSANDAYAAALNAGSKSEALRVIKELAPKDYVLQFHNLNANLDRIFSPPLEVYVSPFLSSSFFPVPEELEVWAAENVVDAAARPLRPMSIVVEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVESNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNSALRSWAIHNATFITLEGPLYSGSNQSAAQASQEGDQASSC |
|
NCBI Accession
|
YP_009175013.1
|
|
Location
|
2166-2456 |
|
Gene Name
|
C4 |
|
Protein Name
|
C4 protein |
|
Coding Region
|
ATGGGAGCCCTCATCTCCATGTGCTCATCCAGTTCGAGGGCAAATTCGTCTGCACGAATAACAGATTCTTCGACCTGGTATGCCGAACCAGGCCAGCACATATGCATCCGACCATTCAGGGAGCTAAGTCAAGCTCAGATGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGACAACAGTCAGCCAACGACGCTTACGCCGCAGCGCTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTAA |
|
Protein Sequence
|
MGALISMCSSSSRANSSARITDSSTWYAEPGQHICIRPFRELSQAQMSSPIWRRTETPSTGESFRSMEDLQEGDNSQPTTLTPQRLTQAVSQRLLE |