Vernonia yellow vein virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000864465.1 |
| Isolate |
India:Madurai |
| Release date |
2015/2/13 |
| Submitter |
Packialakshmi,R.M., Srivastava,N., Girish,K.R., Usha,R. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGAAATTTTTTTTGGGCCCCACCACGTGCTCTGTCTTTAAATCTTGTCCGCTCCTCAAAGTCTTATTAGTTCGTGGTCCCCTATAAAGATTGGTCTCCAAGTTTTCATTTTCAAAAATGTGGGATCCCCTTTTGCATGAGTTCCCTGAAACCGTACATGGTCTTCGTTGTATGCTAGCGGTTAAGTATTTATCCGCCGTGGCAGATACGTATTCTCCTGATACCTTAGGTTTCGATCTTCTTAGGGATTTAATTTGTGTCGTTAGGGCTCGTAATTATGTCGAAGCGACCAGCAGATATAGTGATTTCAACTCCCGTATCCAAAGTACGTCGTCGTCTGAATTTCGACAGCCCCTATTCTCGACGTGCTGCTGTCCCCACTGTCCGCGTCACCAAAAGACAAATGTGGACCAACAGGCCCATGTACCGAAAGCCCAGGCTCTATCGGATGTACAAAAGCAATGATGTACCAAAGGGCTGTGAAGGCCCATGTAAGGTGCAGTCGTTTGAACAGCGTCATGATATTGCTCATACTGGCAAGGTGATATGTGTCTCGGATGTCACACGTGGTAATGGGTTGACTCATAGGGTTGGTAAACGTTTTTGTGTTAAGTCCATGTATGTGCTTGGTAAGGTGTGGATGGATGAAAACATCAAGACGAAGAACCATACGAACACAGTTATGTTCTATATTGTAAGAGATCGTCGTCCGTTTGGGACTCCCATGGATTTTGGTCAGGTTTTTAACATGTATGATAATGAGCCTAGCACTGCTACTGTCAAAAATGATTTGAGGGATCGGTATCAGGTATTGCGGAAGTTCTACGCAACTGTTACTGGTGGTCAGTATGCAAGCAAGGAGCAGGCAATGGTTCAGAAATTCATGAGGCTGAATAATTATGTTGTTTACAATCATCAGGAGGCTGCTAAGTATGATAACCATACTGAGAACGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAATCCAGTGTATGCTACTTTGAAGATACGGATATATTTTTATGACTCTGTATCAAATTAATAAAAATTAAATTTTATTATTTCGAATTGTTTTACATATATTGTTCCTGATAATACATTGTGTAATACATGATCTACTGCTCTAATTACAAGATTTAAAGAAATTACGCCTAAACTATCCAAGTATTTTAATACTTGTGTCTTAAATACTCTTAAGAAATGCGATGTCGCTGGACGTAAGTGACTCCAAATGGTGAAAGTCAGATAACATTTGCGTAGTCCCAGTGCTTTCCTCAGGTAGTGGTTGAATTGGATCCTGACTTCGATGATGTCCTTGTTCATGTTGAATGGTCGTTGTAGGTGCTTTAGGATCTTGAAATATAGGGGATTTGGAACTTCCCAGATAAATACGCCATTCTGAGCTTGAGCTGCAGTGATGGGTTCCCCTGTGTGTGAATCCATGGTTGTGGCAGTTGATGTGTCTGTATATTGAGCATCCACAGGGGAGGTCTATCCTCTTTCTTTTGATTGGTCTTGCTTTTGCTGCTCTATGTAGGGCTTTGATTGGCACTTGAGAACAGCGGCTCGTATAGGGTGAGGAAGGTTGCATTTTTGAGTGACCAGTCTCTTAATGCTTTGTTTTTTTCTTCGTCTAGGTATTCTTTATAGGATGATGTTGGCCCTGGATTGCATAGGAAGATTGTTGGAATCCCTCCTTTAATTTGAATGGGTTTTCCGTATTTCGTGTTGCTTTGCCACTCCCTTTGGGCCCCCATAAATTCTTTATAGTGTTTTAGGTAGTGGGGGTCAACATCGTCAATGACGTTATACCACGCGTCATTGCTGTATACTTTCGGGCTTAGGTCCAGGTGACCACATAGGTAGTTGTGTGGGCCTAGTGAACGAGCCCACATTGTCTTTCCTGTCCTGCTTTCTCCTTCTATTATTATACTGAGTGGTCGGAGTGGCCGCAGGCCGGCGTCGGAAATATTTTCCGATGCCCACTCTTCCATTTCCTCTGGTACATTATTAAAAGTAGAAGATAAAAAAGGCGAAATATAAATCTCTAATGGAGGTGTAAAAATCCTATCTAAATTACTATTTAAATTATGAAACTGTAATACAAAATCTTTGGGAGCTTTCTCCCTTAGTATATTGAGGGCCGCAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGATTTGGAAAACTCCAAAGTCAAGGATGTCTCCGTCTTCTTCCATGTAGGATTTGACATCGCTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGTTTGTAGGTCGAAGAATCTGTTATTTTGGCATTTGAATTTGCCTTCGAACTGGATGAGGACATGCAGGTGAGGAGTCCCATCTTCGTGTAGTTCTCTGCAAACTCTGATGAACAGTTTATTTGTAGGTGTTTCTAGGTTTTTAATTTGGGAAAGGGTTTCTTCTTTTGTGAGTGAGCAGTGAGGGTATGTGAGGAAATAGTTCTTGGCATTTATTAAGAACCGTTTTGGGGGTGCCATGTTGACTTGGTCAATCGGGTCCTCTCAAACTATCGTATGCAATCGGGGAATGGGTCTCAATATATAGGTGAGGACCTAAATGGCATGGATTGTAATTTCGGAATGAAATTCAAATTTCAAATTGGTAAAGCGGCCATCCGTCTAATATT
Gene Information
|
NCBI Accession
|
YP_459925.1
|
|
Location
|
129-476 |
|
Gene Name
|
av2 |
|
Protein Name
|
AV2 protein |
|
Coding Region
|
ATGTGGGATCCCCTTTTGCATGAGTTCCCTGAAACCGTACATGGTCTTCGTTGTATGCTAGCGGTTAAGTATTTATCCGCCGTGGCAGATACGTATTCTCCTGATACCTTAGGTTTCGATCTTCTTAGGGATTTAATTTGTGTCGTTAGGGCTCGTAATTATGTCGAAGCGACCAGCAGATATAGTGATTTCAACTCCCGTATCCAAAGTACGTCGTCGTCTGAATTTCGACAGCCCCTATTCTCGACGTGCTGCTGTCCCCACTGTCCGCGTCACCAAAAGACAAATGTGGACCAACAGGCCCATGTACCGAAAGCCCAGGCTCTATCGGATGTACAAAAGCAATGA |
|
Protein Sequence
|
MWDPLLHEFPETVHGLRCMLAVKYLSAVADTYSPDTLGFDLLRDLICVVRARNYVEATSRYSDFNSRIQSTSSSEFRQPLFSTCCCPHCPRHQKTNVDQQAHVPKAQALSDVQKQ |
|
NCBI Accession
|
YP_459926.1
|
|
Location
|
289-1059 |
|
Gene Name
|
av1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCAGCAGATATAGTGATTTCAACTCCCGTATCCAAAGTACGTCGTCGTCTGAATTTCGACAGCCCCTATTCTCGACGTGCTGCTGTCCCCACTGTCCGCGTCACCAAAAGACAAATGTGGACCAACAGGCCCATGTACCGAAAGCCCAGGCTCTATCGGATGTACAAAAGCAATGATGTACCAAAGGGCTGTGAAGGCCCATGTAAGGTGCAGTCGTTTGAACAGCGTCATGATATTGCTCATACTGGCAAGGTGATATGTGTCTCGGATGTCACACGTGGTAATGGGTTGACTCATAGGGTTGGTAAACGTTTTTGTGTTAAGTCCATGTATGTGCTTGGTAAGGTGTGGATGGATGAAAACATCAAGACGAAGAACCATACGAACACAGTTATGTTCTATATTGTAAGAGATCGTCGTCCGTTTGGGACTCCCATGGATTTTGGTCAGGTTTTTAACATGTATGATAATGAGCCTAGCACTGCTACTGTCAAAAATGATTTGAGGGATCGGTATCAGGTATTGCGGAAGTTCTACGCAACTGTTACTGGTGGTCAGTATGCAAGCAAGGAGCAGGCAATGGTTCAGAAATTCATGAGGCTGAATAATTATGTTGTTTACAATCATCAGGAGGCTGCTAAGTATGATAACCATACTGAGAACGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAATCCAGTGTATGCTACTTTGAAGATACGGATATATTTTTATGACTCTGTATCAAATTAA |
|
Protein Sequence
|
MSKRPADIVISTPVSKVRRRLNFDSPYSRRAAVPTVRVTKRQMWTNRPMYRKPRLYRMYKSNDVPKGCEGPCKVQSFEQRHDIAHTGKVICVSDVTRGNGLTHRVGKRFCVKSMYVLGKVWMDENIKTKNHTNTVMFYIVRDRRPFGTPMDFGQVFNMYDNEPSTATVKNDLRDRYQVLRKFYATVTGGQYASKEQAMVQKFMRLNNYVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN |
|
NCBI Accession
|
YP_459927.2
|
|
Location
|
319-993 |
|
Gene Name
|
ac5 |
|
Protein Name
|
AC5 protein |
|
Coding Region
|
ATGAGTACATGCCATATACAACAACAAAGCGTTCTCAGTATGGTTATCATACTTAGCAGCCTCCTGATGATTGTAAACAACATAATTATTCAGCCTCATGAATTTCTGAACCATTGCCTGCTCCTTGCTTGCATACTGACCACCAGTAACAGTTGCGTAGAACTTCCGCAATACCTGATACCGATCCCTCAAATCATTTTTGACAGTAGCAGTGCTAGGCTCATTATCATACATGTTAAAAACCTGACCAAAATCCATGGGAGTCCCAAACGGACGACGATCTCTTACAATATAGAACATAACTGTGTTCGTATGGTTCTTCGTCTTGATGTTTTCATCCATCCACACCTTACCAAGCACATACATGGACTTAACACAAAAACGTTTACCAACCCTATGAGTCAACCCATTACCACGTGTGACATCCGAGACACATATCACCTTGCCAGTATGAGCAATATCATGACGCTGTTCAAACGACTGCACCTTACATGGGCCTTCACAGCCCTTTGGTACATCATTGCTTTTGTACATCCGATAGAGCCTGGGCTTTCGGTACATGGGCCTGTTGGTCCACATTTGTCTTTTGGTGACGCGGACAGTGGGGACAGCAGCACGTCGAGAATAGGGGCTGTCGAAATTCAGACGACGACGTACTTTGGATACGGGAGTTGA |
|
Protein Sequence
|
MSTCHIQQQSVLSMVIILSSLLMIVNNIIIQPHEFLNHCLLLACILTTSNSCVELPQYLIPIPQIIFDSSSARLIIIHVKNLTKIHGSPKRTTISYNIEHNCVRMVLRLDVFIHPHLTKHIHGLNTKTFTNPMSQPITTCDIRDTYHLASMSNIMTLFKRLHLTWAFTALWYIIAFVHPIEPGLSVHGPVGPHLSFGDADSGDSSTSRIGAVEIQTTTYFGYGS |
|
NCBI Accession
|
YP_459928.2
|
|
Location
|
1056-1460 |
|
Gene Name
|
ac3 |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGGATTCACACACAGGGGAACCCATCACTGCAGCTCAAGCTCAGAATGGCGTATTTATCTGGGAAGTTCCAAATCCCCTATATTTCAAGATCCTAAAGCACCTACAACGACCATTCAACATGAACAAGGACATCATCGAAGTCAGGATCCAATTCAACCACTACCTGAGGAAAGCACTGGGACTACGCAAATGTTATCTGACTTTCACCATTTGGAGTCACTTACGTCCAGCGACATCGCATTTCTTAAGAGTATTTAAGACACAAGTATTAAAATACTTGGATAGTTTAGGCGTAATTTCTTTAAATCTTGTAATTAGAGCAGTAGATCATGTATTACACAATGTATTATCAGGAACAATATATGTAAAACAATTCGAAATAATAAAATTTAATTTTTATTAA |
|
Protein Sequence
|
MDSHTGEPITAAQAQNGVFIWEVPNPLYFKILKHLQRPFNMNKDIIEVRIQFNHYLRKALGLRKCYLTFTIWSHLRPATSHFLRVFKTQVLKYLDSLGVISLNLVIRAVDHVLHNVLSGTIYVKQFEIIKFNFY |
|
NCBI Accession
|
YP_459929.2
|
|
Location
|
1201-1608 |
|
Gene Name
|
ac2 |
|
Protein Name
|
transactivator protein |
|
Coding Region
|
ATGCAACCTTCCTCACCCTATACGAGCCGCTGTTCTCAAGTGCCAATCAAAGCCCTACATAGAGCAGCAAAAGCAAGACCAATCAAAAGAAAGAGGATAGACCTCCCCTGTGGATGCTCAATATACAGACACATCAACTGCCACAACCATGGATTCACACACAGGGGAACCCATCACTGCAGCTCAAGCTCAGAATGGCGTATTTATCTGGGAAGTTCCAAATCCCCTATATTTCAAGATCCTAAAGCACCTACAACGACCATTCAACATGAACAAGGACATCATCGAAGTCAGGATCCAATTCAACCACTACCTGAGGAAAGCACTGGGACTACGCAAATGTTATCTGACTTTCACCATTTGGAGTCACTTACGTCCAGCGACATCGCATTTCTTAAGAGTATTTAA |
|
Protein Sequence
|
MQPSSPYTSRCSQVPIKALHRAAKARPIKRKRIDLPCGCSIYRHINCHNHGFTHRGTHHCSSSSEWRIYLGSSKSPIFQDPKAPTTTIQHEQGHHRSQDPIQPLPEESTGTTQMLSDFHHLESLTSSDIAFLKSI |
|
NCBI Accession
|
YP_459930.2
|
|
Location
|
1547-2596 |
|
Gene Name
|
ac1 |
|
Protein Name
|
replication initiator protein |
|
Coding Region
|
ATGGCACCCCCAAAACGGTTCTTAATAAATGCCAAGAACTATTTCCTCACATACCCTCACTGCTCACTCACAAAAGAAGAAACCCTTTCCCAAATTAAAAACCTAGAAACACCTACAAATAAACTGTTCATCAGAGTTTGCAGAGAACTACACGAAGATGGGACTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGCAAATTCAAATGCCAAAATAACAGATTCTTCGACCTACAAACCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAATCCTACATGGAAGAAGACGGAGACATCCTTGACTTTGGAGTTTTCCAAATCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTGCGGCCCTCAATATACTAAGGGAGAAAGCTCCCAAAGATTTTGTATTACAGTTTCATAATTTAAATAGTAATTTAGATAGGATTTTTACACCTCCATTAGAGATTTATATTTCGCCTTTTTTATCTTCTACTTTTAATAATGTACCAGAGGAAATGGAAGAGTGGGCATCGGAAAATATTTCCGACGCCGGCCTGCGGCCACTCCGACCACTCAGTATAATAATAGAAGGAGAAAGCAGGACAGGAAAGACAATGTGGGCTCGTTCACTAGGCCCACACAACTACCTATGTGGTCACCTGGACCTAAGCCCGAAAGTATACAGCAATGACGCGTGGTATAACGTCATTGACGATGTTGACCCCCACTACCTAAAACACTATAAAGAATTTATGGGGGCCCAAAGGGAGTGGCAAAGCAACACGAAATACGGAAAACCCATTCAAATTAAAGGAGGGATTCCAACAATCTTCCTATGCAATCCAGGGCCAACATCATCCTATAAAGAATACCTAGACGAAGAAAAAAACAAAGCATTAAGAGACTGGTCACTCAAAAATGCAACCTTCCTCACCCTATACGAGCCGCTGTTCTCAAGTGCCAATCAAAGCCCTACATAG |
|
Protein Sequence
|
MAPPKRFLINAKNYFLTYPHCSLTKEETLSQIKNLETPTNKLFIRVCRELHEDGTPHLHVLIQFEGKFKCQNNRFFDLQTPSRSAHFHPNIQGAKSSSDVKSYMEEDGDILDFGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDFVLQFHNLNSNLDRIFTPPLEIYISPFLSSTFNNVPEEMEEWASENISDAGLRPLRPLSIIIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHYKEFMGAQREWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNKALRDWSLKNATFLTLYEPLFSSANQSPT |
|
NCBI Accession
|
YP_459931.1
|
|
Location
|
2146-2439 |
|
Gene Name
|
ac4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGACTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGCAAATTCAAATGCCAAAATAACAGATTCTTCGACCTACAAACCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAATCCTACATGGAAGAAGACGGAGACATCCTTGACTTTGGAGTTTTCCAAATCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTGCGGCCCTCAATATACTAA |
|
Protein Sequence
|
MGLLTCMSSSSSKANSNAKITDSSTYKPQAGQHISIRTFRELKAQAMSNPTWKKTETSLTLEFSKSMEDQLEEVANLPTTHMPRQSIQGPKLRPSIY |