Vernonia yellow vein virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000864465.1
Isolate India:Madurai
Release date 2015/2/13
Submitter Packialakshmi,R.M., Srivastava,N., Girish,K.R., Usha,R.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_007730
ACCGGATGGCCGCGAAATTTTTTTTGGGCCCCACCACGTGCTCTGTCTTTAAATCTTGTCCGCTCCTCAAAGTCTTATTAGTTCGTGGTCCCCTATAAAGATTGGTCTCCAAGTTTTCATTTTCAAAAATGTGGGATCCCCTTTTGCATGAGTTCCCTGAAACCGTACATGGTCTTCGTTGTATGCTAGCGGTTAAGTATTTATCCGCCGTGGCAGATACGTATTCTCCTGATACCTTAGGTTTCGATCTTCTTAGGGATTTAATTTGTGTCGTTAGGGCTCGTAATTATGTCGAAGCGACCAGCAGATATAGTGATTTCAACTCCCGTATCCAAAGTACGTCGTCGTCTGAATTTCGACAGCCCCTATTCTCGACGTGCTGCTGTCCCCACTGTCCGCGTCACCAAAAGACAAATGTGGACCAACAGGCCCATGTACCGAAAGCCCAGGCTCTATCGGATGTACAAAAGCAATGATGTACCAAAGGGCTGTGAAGGCCCATGTAAGGTGCAGTCGTTTGAACAGCGTCATGATATTGCTCATACTGGCAAGGTGATATGTGTCTCGGATGTCACACGTGGTAATGGGTTGACTCATAGGGTTGGTAAACGTTTTTGTGTTAAGTCCATGTATGTGCTTGGTAAGGTGTGGATGGATGAAAACATCAAGACGAAGAACCATACGAACACAGTTATGTTCTATATTGTAAGAGATCGTCGTCCGTTTGGGACTCCCATGGATTTTGGTCAGGTTTTTAACATGTATGATAATGAGCCTAGCACTGCTACTGTCAAAAATGATTTGAGGGATCGGTATCAGGTATTGCGGAAGTTCTACGCAACTGTTACTGGTGGTCAGTATGCAAGCAAGGAGCAGGCAATGGTTCAGAAATTCATGAGGCTGAATAATTATGTTGTTTACAATCATCAGGAGGCTGCTAAGTATGATAACCATACTGAGAACGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAATCCAGTGTATGCTACTTTGAAGATACGGATATATTTTTATGACTCTGTATCAAATTAATAAAAATTAAATTTTATTATTTCGAATTGTTTTACATATATTGTTCCTGATAATACATTGTGTAATACATGATCTACTGCTCTAATTACAAGATTTAAAGAAATTACGCCTAAACTATCCAAGTATTTTAATACTTGTGTCTTAAATACTCTTAAGAAATGCGATGTCGCTGGACGTAAGTGACTCCAAATGGTGAAAGTCAGATAACATTTGCGTAGTCCCAGTGCTTTCCTCAGGTAGTGGTTGAATTGGATCCTGACTTCGATGATGTCCTTGTTCATGTTGAATGGTCGTTGTAGGTGCTTTAGGATCTTGAAATATAGGGGATTTGGAACTTCCCAGATAAATACGCCATTCTGAGCTTGAGCTGCAGTGATGGGTTCCCCTGTGTGTGAATCCATGGTTGTGGCAGTTGATGTGTCTGTATATTGAGCATCCACAGGGGAGGTCTATCCTCTTTCTTTTGATTGGTCTTGCTTTTGCTGCTCTATGTAGGGCTTTGATTGGCACTTGAGAACAGCGGCTCGTATAGGGTGAGGAAGGTTGCATTTTTGAGTGACCAGTCTCTTAATGCTTTGTTTTTTTCTTCGTCTAGGTATTCTTTATAGGATGATGTTGGCCCTGGATTGCATAGGAAGATTGTTGGAATCCCTCCTTTAATTTGAATGGGTTTTCCGTATTTCGTGTTGCTTTGCCACTCCCTTTGGGCCCCCATAAATTCTTTATAGTGTTTTAGGTAGTGGGGGTCAACATCGTCAATGACGTTATACCACGCGTCATTGCTGTATACTTTCGGGCTTAGGTCCAGGTGACCACATAGGTAGTTGTGTGGGCCTAGTGAACGAGCCCACATTGTCTTTCCTGTCCTGCTTTCTCCTTCTATTATTATACTGAGTGGTCGGAGTGGCCGCAGGCCGGCGTCGGAAATATTTTCCGATGCCCACTCTTCCATTTCCTCTGGTACATTATTAAAAGTAGAAGATAAAAAAGGCGAAATATAAATCTCTAATGGAGGTGTAAAAATCCTATCTAAATTACTATTTAAATTATGAAACTGTAATACAAAATCTTTGGGAGCTTTCTCCCTTAGTATATTGAGGGCCGCAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGATTTGGAAAACTCCAAAGTCAAGGATGTCTCCGTCTTCTTCCATGTAGGATTTGACATCGCTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGTTTGTAGGTCGAAGAATCTGTTATTTTGGCATTTGAATTTGCCTTCGAACTGGATGAGGACATGCAGGTGAGGAGTCCCATCTTCGTGTAGTTCTCTGCAAACTCTGATGAACAGTTTATTTGTAGGTGTTTCTAGGTTTTTAATTTGGGAAAGGGTTTCTTCTTTTGTGAGTGAGCAGTGAGGGTATGTGAGGAAATAGTTCTTGGCATTTATTAAGAACCGTTTTGGGGGTGCCATGTTGACTTGGTCAATCGGGTCCTCTCAAACTATCGTATGCAATCGGGGAATGGGTCTCAATATATAGGTGAGGACCTAAATGGCATGGATTGTAATTTCGGAATGAAATTCAAATTTCAAATTGGTAAAGCGGCCATCCGTCTAATATT

Gene Information

NCBI Accession YP_459925.1
Location 129-476
Gene Name av2
Protein Name AV2 protein
Coding Region ATGTGGGATCCCCTTTTGCATGAGTTCCCTGAAACCGTACATGGTCTTCGTTGTATGCTAGCGGTTAAGTATTTATCCGCCGTGGCAGATACGTATTCTCCTGATACCTTAGGTTTCGATCTTCTTAGGGATTTAATTTGTGTCGTTAGGGCTCGTAATTATGTCGAAGCGACCAGCAGATATAGTGATTTCAACTCCCGTATCCAAAGTACGTCGTCGTCTGAATTTCGACAGCCCCTATTCTCGACGTGCTGCTGTCCCCACTGTCCGCGTCACCAAAAGACAAATGTGGACCAACAGGCCCATGTACCGAAAGCCCAGGCTCTATCGGATGTACAAAAGCAATGA
Protein Sequence MWDPLLHEFPETVHGLRCMLAVKYLSAVADTYSPDTLGFDLLRDLICVVRARNYVEATSRYSDFNSRIQSTSSSEFRQPLFSTCCCPHCPRHQKTNVDQQAHVPKAQALSDVQKQ

NCBI Accession YP_459926.1
Location 289-1059
Gene Name av1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATAGTGATTTCAACTCCCGTATCCAAAGTACGTCGTCGTCTGAATTTCGACAGCCCCTATTCTCGACGTGCTGCTGTCCCCACTGTCCGCGTCACCAAAAGACAAATGTGGACCAACAGGCCCATGTACCGAAAGCCCAGGCTCTATCGGATGTACAAAAGCAATGATGTACCAAAGGGCTGTGAAGGCCCATGTAAGGTGCAGTCGTTTGAACAGCGTCATGATATTGCTCATACTGGCAAGGTGATATGTGTCTCGGATGTCACACGTGGTAATGGGTTGACTCATAGGGTTGGTAAACGTTTTTGTGTTAAGTCCATGTATGTGCTTGGTAAGGTGTGGATGGATGAAAACATCAAGACGAAGAACCATACGAACACAGTTATGTTCTATATTGTAAGAGATCGTCGTCCGTTTGGGACTCCCATGGATTTTGGTCAGGTTTTTAACATGTATGATAATGAGCCTAGCACTGCTACTGTCAAAAATGATTTGAGGGATCGGTATCAGGTATTGCGGAAGTTCTACGCAACTGTTACTGGTGGTCAGTATGCAAGCAAGGAGCAGGCAATGGTTCAGAAATTCATGAGGCTGAATAATTATGTTGTTTACAATCATCAGGAGGCTGCTAAGTATGATAACCATACTGAGAACGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAATCCAGTGTATGCTACTTTGAAGATACGGATATATTTTTATGACTCTGTATCAAATTAA
Protein Sequence MSKRPADIVISTPVSKVRRRLNFDSPYSRRAAVPTVRVTKRQMWTNRPMYRKPRLYRMYKSNDVPKGCEGPCKVQSFEQRHDIAHTGKVICVSDVTRGNGLTHRVGKRFCVKSMYVLGKVWMDENIKTKNHTNTVMFYIVRDRRPFGTPMDFGQVFNMYDNEPSTATVKNDLRDRYQVLRKFYATVTGGQYASKEQAMVQKFMRLNNYVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_459927.2
Location 319-993
Gene Name ac5
Protein Name AC5 protein
Coding Region ATGAGTACATGCCATATACAACAACAAAGCGTTCTCAGTATGGTTATCATACTTAGCAGCCTCCTGATGATTGTAAACAACATAATTATTCAGCCTCATGAATTTCTGAACCATTGCCTGCTCCTTGCTTGCATACTGACCACCAGTAACAGTTGCGTAGAACTTCCGCAATACCTGATACCGATCCCTCAAATCATTTTTGACAGTAGCAGTGCTAGGCTCATTATCATACATGTTAAAAACCTGACCAAAATCCATGGGAGTCCCAAACGGACGACGATCTCTTACAATATAGAACATAACTGTGTTCGTATGGTTCTTCGTCTTGATGTTTTCATCCATCCACACCTTACCAAGCACATACATGGACTTAACACAAAAACGTTTACCAACCCTATGAGTCAACCCATTACCACGTGTGACATCCGAGACACATATCACCTTGCCAGTATGAGCAATATCATGACGCTGTTCAAACGACTGCACCTTACATGGGCCTTCACAGCCCTTTGGTACATCATTGCTTTTGTACATCCGATAGAGCCTGGGCTTTCGGTACATGGGCCTGTTGGTCCACATTTGTCTTTTGGTGACGCGGACAGTGGGGACAGCAGCACGTCGAGAATAGGGGCTGTCGAAATTCAGACGACGACGTACTTTGGATACGGGAGTTGA
Protein Sequence MSTCHIQQQSVLSMVIILSSLLMIVNNIIIQPHEFLNHCLLLACILTTSNSCVELPQYLIPIPQIIFDSSSARLIIIHVKNLTKIHGSPKRTTISYNIEHNCVRMVLRLDVFIHPHLTKHIHGLNTKTFTNPMSQPITTCDIRDTYHLASMSNIMTLFKRLHLTWAFTALWYIIAFVHPIEPGLSVHGPVGPHLSFGDADSGDSSTSRIGAVEIQTTTYFGYGS

NCBI Accession YP_459928.2
Location 1056-1460
Gene Name ac3
Protein Name replication enhancer protein
Coding Region ATGGATTCACACACAGGGGAACCCATCACTGCAGCTCAAGCTCAGAATGGCGTATTTATCTGGGAAGTTCCAAATCCCCTATATTTCAAGATCCTAAAGCACCTACAACGACCATTCAACATGAACAAGGACATCATCGAAGTCAGGATCCAATTCAACCACTACCTGAGGAAAGCACTGGGACTACGCAAATGTTATCTGACTTTCACCATTTGGAGTCACTTACGTCCAGCGACATCGCATTTCTTAAGAGTATTTAAGACACAAGTATTAAAATACTTGGATAGTTTAGGCGTAATTTCTTTAAATCTTGTAATTAGAGCAGTAGATCATGTATTACACAATGTATTATCAGGAACAATATATGTAAAACAATTCGAAATAATAAAATTTAATTTTTATTAA
Protein Sequence MDSHTGEPITAAQAQNGVFIWEVPNPLYFKILKHLQRPFNMNKDIIEVRIQFNHYLRKALGLRKCYLTFTIWSHLRPATSHFLRVFKTQVLKYLDSLGVISLNLVIRAVDHVLHNVLSGTIYVKQFEIIKFNFY

NCBI Accession YP_459929.2
Location 1201-1608
Gene Name ac2
Protein Name transactivator protein
Coding Region ATGCAACCTTCCTCACCCTATACGAGCCGCTGTTCTCAAGTGCCAATCAAAGCCCTACATAGAGCAGCAAAAGCAAGACCAATCAAAAGAAAGAGGATAGACCTCCCCTGTGGATGCTCAATATACAGACACATCAACTGCCACAACCATGGATTCACACACAGGGGAACCCATCACTGCAGCTCAAGCTCAGAATGGCGTATTTATCTGGGAAGTTCCAAATCCCCTATATTTCAAGATCCTAAAGCACCTACAACGACCATTCAACATGAACAAGGACATCATCGAAGTCAGGATCCAATTCAACCACTACCTGAGGAAAGCACTGGGACTACGCAAATGTTATCTGACTTTCACCATTTGGAGTCACTTACGTCCAGCGACATCGCATTTCTTAAGAGTATTTAA
Protein Sequence MQPSSPYTSRCSQVPIKALHRAAKARPIKRKRIDLPCGCSIYRHINCHNHGFTHRGTHHCSSSSEWRIYLGSSKSPIFQDPKAPTTTIQHEQGHHRSQDPIQPLPEESTGTTQMLSDFHHLESLTSSDIAFLKSI

NCBI Accession YP_459930.2
Location 1547-2596
Gene Name ac1
Protein Name replication initiator protein
Coding Region ATGGCACCCCCAAAACGGTTCTTAATAAATGCCAAGAACTATTTCCTCACATACCCTCACTGCTCACTCACAAAAGAAGAAACCCTTTCCCAAATTAAAAACCTAGAAACACCTACAAATAAACTGTTCATCAGAGTTTGCAGAGAACTACACGAAGATGGGACTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGCAAATTCAAATGCCAAAATAACAGATTCTTCGACCTACAAACCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAATCCTACATGGAAGAAGACGGAGACATCCTTGACTTTGGAGTTTTCCAAATCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTGCGGCCCTCAATATACTAAGGGAGAAAGCTCCCAAAGATTTTGTATTACAGTTTCATAATTTAAATAGTAATTTAGATAGGATTTTTACACCTCCATTAGAGATTTATATTTCGCCTTTTTTATCTTCTACTTTTAATAATGTACCAGAGGAAATGGAAGAGTGGGCATCGGAAAATATTTCCGACGCCGGCCTGCGGCCACTCCGACCACTCAGTATAATAATAGAAGGAGAAAGCAGGACAGGAAAGACAATGTGGGCTCGTTCACTAGGCCCACACAACTACCTATGTGGTCACCTGGACCTAAGCCCGAAAGTATACAGCAATGACGCGTGGTATAACGTCATTGACGATGTTGACCCCCACTACCTAAAACACTATAAAGAATTTATGGGGGCCCAAAGGGAGTGGCAAAGCAACACGAAATACGGAAAACCCATTCAAATTAAAGGAGGGATTCCAACAATCTTCCTATGCAATCCAGGGCCAACATCATCCTATAAAGAATACCTAGACGAAGAAAAAAACAAAGCATTAAGAGACTGGTCACTCAAAAATGCAACCTTCCTCACCCTATACGAGCCGCTGTTCTCAAGTGCCAATCAAAGCCCTACATAG
Protein Sequence MAPPKRFLINAKNYFLTYPHCSLTKEETLSQIKNLETPTNKLFIRVCRELHEDGTPHLHVLIQFEGKFKCQNNRFFDLQTPSRSAHFHPNIQGAKSSSDVKSYMEEDGDILDFGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDFVLQFHNLNSNLDRIFTPPLEIYISPFLSSTFNNVPEEMEEWASENISDAGLRPLRPLSIIIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHYKEFMGAQREWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNKALRDWSLKNATFLTLYEPLFSSANQSPT

NCBI Accession YP_459931.1
Location 2146-2439
Gene Name ac4
Protein Name AC4 protein
Coding Region ATGGGACTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGCAAATTCAAATGCCAAAATAACAGATTCTTCGACCTACAAACCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAATCCTACATGGAAGAAGACGGAGACATCCTTGACTTTGGAGTTTTCCAAATCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTGCGGCCCTCAATATACTAA
Protein Sequence MGLLTCMSSSSSKANSNAKITDSSTYKPQAGQHISIRTFRELKAQAMSNPTWKKTETSLTLEFSKSMEDQLEEVANLPTTHMPRQSIQGPKLRPSIY

References More References in PubMed

1

A simple and efficient method for agroinfection of Vernonia cinerea with infectious clones of Vernonia yellow vein virus.

Packialakshmi RM, et al.  Virus Genes. 2011 Dec;43(3):465-70. doi: 10.1007/s11262-011-0656-y. Epub 2011 Aug 18.

PMID: 21850413
2

Properties of a virus isolated from Vernonia amygdalina Del. in Lagos, Nigeria.

Taiwo MA, et al.  Acta Virol. 2004;48(4):257-62.

PMID: 15745049
3

A novel East African monopartite begomovirus-betasatellite complex that infects Vernonia amygdalina.

Mollel HG, et al.  Arch Virol. 2017 Apr;162(4):1079-1082. doi: 10.1007/s00705-016-3175-2. Epub 2016 Nov 29.

PMID: 27900540
4

A new begomovirus associated with alpha- and betasatellite molecules isolated from Vernonia cinerea in China.

Zulfiqar A, et al.  Arch Virol. 2012 Jan;157(1):189-91. doi: 10.1007/s00705-011-1137-2. Epub 2011 Oct 18.

PMID: 22006044
5

Molecular characterization of a distinct begomovirus species from Vernonia cinerea and its associated DNA-beta using the bacteriophage Phi 29 DNA polymerase.

Packialakshmi RM, et al.  Virus Genes. 2010 Aug;41(1):135-43. doi: 10.1007/s11262-010-0484-5. Epub 2010 Apr 17.

PMID: 20401528