Genus | Begomovirus |
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NCBI Assembly | GCF_000864465.1 |
Isolate | India:Madurai |
Release date | 2015/2/13 |
Submitter | Packialakshmi,R.M., Srivastava,N., Girish,K.R., Usha,R. |
Host | |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_459925.1 |
---|---|
Location | 129-476 |
Gene Name | av2 |
Protein Name | AV2 protein |
Coding Region | ATGTGGGATCCCCTTTTGCATGAGTTCCCTGAAACCGTACATGGTCTTCGTTGTATGCTAGCGGTTAAGTATTTATCCGCCGTGGCAGATACGTATTCTCCTGATACCTTAGGTTTCGATCTTCTTAGGGATTTAATTTGTGTCGTTAGGGCTCGTAATTATGTCGAAGCGACCAGCAGATATAGTGATTTCAACTCCCGTATCCAAAGTACGTCGTCGTCTGAATTTCGACAGCCCCTATTCTCGACGTGCTGCTGTCCCCACTGTCCGCGTCACCAAAAGACAAATGTGGACCAACAGGCCCATGTACCGAAAGCCCAGGCTCTATCGGATGTACAAAAGCAATGA |
Protein Sequence | MWDPLLHEFPETVHGLRCMLAVKYLSAVADTYSPDTLGFDLLRDLICVVRARNYVEATSRYSDFNSRIQSTSSSEFRQPLFSTCCCPHCPRHQKTNVDQQAHVPKAQALSDVQKQ |
NCBI Accession | YP_459926.1 |
---|---|
Location | 289-1059 |
Gene Name | av1 |
Protein Name | coat protein |
Coding Region | ATGTCGAAGCGACCAGCAGATATAGTGATTTCAACTCCCGTATCCAAAGTACGTCGTCGTCTGAATTTCGACAGCCCCTATTCTCGACGTGCTGCTGTCCCCACTGTCCGCGTCACCAAAAGACAAATGTGGACCAACAGGCCCATGTACCGAAAGCCCAGGCTCTATCGGATGTACAAAAGCAATGATGTACCAAAGGGCTGTGAAGGCCCATGTAAGGTGCAGTCGTTTGAACAGCGTCATGATATTGCTCATACTGGCAAGGTGATATGTGTCTCGGATGTCACACGTGGTAATGGGTTGACTCATAGGGTTGGTAAACGTTTTTGTGTTAAGTCCATGTATGTGCTTGGTAAGGTGTGGATGGATGAAAACATCAAGACGAAGAACCATACGAACACAGTTATGTTCTATATTGTAAGAGATCGTCGTCCGTTTGGGACTCCCATGGATTTTGGTCAGGTTTTTAACATGTATGATAATGAGCCTAGCACTGCTACTGTCAAAAATGATTTGAGGGATCGGTATCAGGTATTGCGGAAGTTCTACGCAACTGTTACTGGTGGTCAGTATGCAAGCAAGGAGCAGGCAATGGTTCAGAAATTCATGAGGCTGAATAATTATGTTGTTTACAATCATCAGGAGGCTGCTAAGTATGATAACCATACTGAGAACGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAATCCAGTGTATGCTACTTTGAAGATACGGATATATTTTTATGACTCTGTATCAAATTAA |
Protein Sequence | MSKRPADIVISTPVSKVRRRLNFDSPYSRRAAVPTVRVTKRQMWTNRPMYRKPRLYRMYKSNDVPKGCEGPCKVQSFEQRHDIAHTGKVICVSDVTRGNGLTHRVGKRFCVKSMYVLGKVWMDENIKTKNHTNTVMFYIVRDRRPFGTPMDFGQVFNMYDNEPSTATVKNDLRDRYQVLRKFYATVTGGQYASKEQAMVQKFMRLNNYVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN |
NCBI Accession | YP_459927.2 |
---|---|
Location | 319-993 |
Gene Name | ac5 |
Protein Name | AC5 protein |
Coding Region | ATGAGTACATGCCATATACAACAACAAAGCGTTCTCAGTATGGTTATCATACTTAGCAGCCTCCTGATGATTGTAAACAACATAATTATTCAGCCTCATGAATTTCTGAACCATTGCCTGCTCCTTGCTTGCATACTGACCACCAGTAACAGTTGCGTAGAACTTCCGCAATACCTGATACCGATCCCTCAAATCATTTTTGACAGTAGCAGTGCTAGGCTCATTATCATACATGTTAAAAACCTGACCAAAATCCATGGGAGTCCCAAACGGACGACGATCTCTTACAATATAGAACATAACTGTGTTCGTATGGTTCTTCGTCTTGATGTTTTCATCCATCCACACCTTACCAAGCACATACATGGACTTAACACAAAAACGTTTACCAACCCTATGAGTCAACCCATTACCACGTGTGACATCCGAGACACATATCACCTTGCCAGTATGAGCAATATCATGACGCTGTTCAAACGACTGCACCTTACATGGGCCTTCACAGCCCTTTGGTACATCATTGCTTTTGTACATCCGATAGAGCCTGGGCTTTCGGTACATGGGCCTGTTGGTCCACATTTGTCTTTTGGTGACGCGGACAGTGGGGACAGCAGCACGTCGAGAATAGGGGCTGTCGAAATTCAGACGACGACGTACTTTGGATACGGGAGTTGA |
Protein Sequence | MSTCHIQQQSVLSMVIILSSLLMIVNNIIIQPHEFLNHCLLLACILTTSNSCVELPQYLIPIPQIIFDSSSARLIIIHVKNLTKIHGSPKRTTISYNIEHNCVRMVLRLDVFIHPHLTKHIHGLNTKTFTNPMSQPITTCDIRDTYHLASMSNIMTLFKRLHLTWAFTALWYIIAFVHPIEPGLSVHGPVGPHLSFGDADSGDSSTSRIGAVEIQTTTYFGYGS |
NCBI Accession | YP_459928.2 |
---|---|
Location | 1056-1460 |
Gene Name | ac3 |
Protein Name | replication enhancer protein |
Coding Region | ATGGATTCACACACAGGGGAACCCATCACTGCAGCTCAAGCTCAGAATGGCGTATTTATCTGGGAAGTTCCAAATCCCCTATATTTCAAGATCCTAAAGCACCTACAACGACCATTCAACATGAACAAGGACATCATCGAAGTCAGGATCCAATTCAACCACTACCTGAGGAAAGCACTGGGACTACGCAAATGTTATCTGACTTTCACCATTTGGAGTCACTTACGTCCAGCGACATCGCATTTCTTAAGAGTATTTAAGACACAAGTATTAAAATACTTGGATAGTTTAGGCGTAATTTCTTTAAATCTTGTAATTAGAGCAGTAGATCATGTATTACACAATGTATTATCAGGAACAATATATGTAAAACAATTCGAAATAATAAAATTTAATTTTTATTAA |
Protein Sequence | MDSHTGEPITAAQAQNGVFIWEVPNPLYFKILKHLQRPFNMNKDIIEVRIQFNHYLRKALGLRKCYLTFTIWSHLRPATSHFLRVFKTQVLKYLDSLGVISLNLVIRAVDHVLHNVLSGTIYVKQFEIIKFNFY |
NCBI Accession | YP_459929.2 |
---|---|
Location | 1201-1608 |
Gene Name | ac2 |
Protein Name | transactivator protein |
Coding Region | ATGCAACCTTCCTCACCCTATACGAGCCGCTGTTCTCAAGTGCCAATCAAAGCCCTACATAGAGCAGCAAAAGCAAGACCAATCAAAAGAAAGAGGATAGACCTCCCCTGTGGATGCTCAATATACAGACACATCAACTGCCACAACCATGGATTCACACACAGGGGAACCCATCACTGCAGCTCAAGCTCAGAATGGCGTATTTATCTGGGAAGTTCCAAATCCCCTATATTTCAAGATCCTAAAGCACCTACAACGACCATTCAACATGAACAAGGACATCATCGAAGTCAGGATCCAATTCAACCACTACCTGAGGAAAGCACTGGGACTACGCAAATGTTATCTGACTTTCACCATTTGGAGTCACTTACGTCCAGCGACATCGCATTTCTTAAGAGTATTTAA |
Protein Sequence | MQPSSPYTSRCSQVPIKALHRAAKARPIKRKRIDLPCGCSIYRHINCHNHGFTHRGTHHCSSSSEWRIYLGSSKSPIFQDPKAPTTTIQHEQGHHRSQDPIQPLPEESTGTTQMLSDFHHLESLTSSDIAFLKSI |
NCBI Accession | YP_459930.2 |
---|---|
Location | 1547-2596 |
Gene Name | ac1 |
Protein Name | replication initiator protein |
Coding Region | ATGGCACCCCCAAAACGGTTCTTAATAAATGCCAAGAACTATTTCCTCACATACCCTCACTGCTCACTCACAAAAGAAGAAACCCTTTCCCAAATTAAAAACCTAGAAACACCTACAAATAAACTGTTCATCAGAGTTTGCAGAGAACTACACGAAGATGGGACTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGCAAATTCAAATGCCAAAATAACAGATTCTTCGACCTACAAACCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAATCCTACATGGAAGAAGACGGAGACATCCTTGACTTTGGAGTTTTCCAAATCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTGCGGCCCTCAATATACTAAGGGAGAAAGCTCCCAAAGATTTTGTATTACAGTTTCATAATTTAAATAGTAATTTAGATAGGATTTTTACACCTCCATTAGAGATTTATATTTCGCCTTTTTTATCTTCTACTTTTAATAATGTACCAGAGGAAATGGAAGAGTGGGCATCGGAAAATATTTCCGACGCCGGCCTGCGGCCACTCCGACCACTCAGTATAATAATAGAAGGAGAAAGCAGGACAGGAAAGACAATGTGGGCTCGTTCACTAGGCCCACACAACTACCTATGTGGTCACCTGGACCTAAGCCCGAAAGTATACAGCAATGACGCGTGGTATAACGTCATTGACGATGTTGACCCCCACTACCTAAAACACTATAAAGAATTTATGGGGGCCCAAAGGGAGTGGCAAAGCAACACGAAATACGGAAAACCCATTCAAATTAAAGGAGGGATTCCAACAATCTTCCTATGCAATCCAGGGCCAACATCATCCTATAAAGAATACCTAGACGAAGAAAAAAACAAAGCATTAAGAGACTGGTCACTCAAAAATGCAACCTTCCTCACCCTATACGAGCCGCTGTTCTCAAGTGCCAATCAAAGCCCTACATAG |
Protein Sequence | MAPPKRFLINAKNYFLTYPHCSLTKEETLSQIKNLETPTNKLFIRVCRELHEDGTPHLHVLIQFEGKFKCQNNRFFDLQTPSRSAHFHPNIQGAKSSSDVKSYMEEDGDILDFGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDFVLQFHNLNSNLDRIFTPPLEIYISPFLSSTFNNVPEEMEEWASENISDAGLRPLRPLSIIIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHYKEFMGAQREWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNKALRDWSLKNATFLTLYEPLFSSANQSPT |
NCBI Accession | YP_459931.1 |
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Location | 2146-2439 |
Gene Name | ac4 |
Protein Name | AC4 protein |
Coding Region | ATGGGACTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGCAAATTCAAATGCCAAAATAACAGATTCTTCGACCTACAAACCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAATCCTACATGGAAGAAGACGGAGACATCCTTGACTTTGGAGTTTTCCAAATCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTGCGGCCCTCAATATACTAA |
Protein Sequence | MGLLTCMSSSSSKANSNAKITDSSTYKPQAGQHISIRTFRELKAQAMSNPTWKKTETSLTLEFSKSMEDQLEEVANLPTTHMPRQSIQGPKLRPSIY |
1 |
Packialakshmi RM, et al. Virus Genes. 2011 Dec;43(3):465-70. doi: 10.1007/s11262-011-0656-y. Epub 2011 Aug 18. PMID: 21850413 |
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2 |
Properties of a virus isolated from Vernonia amygdalina Del. in Lagos, Nigeria. Taiwo MA, et al. Acta Virol. 2004;48(4):257-62. PMID: 15745049 |
3 |
A novel East African monopartite begomovirus-betasatellite complex that infects Vernonia amygdalina. Mollel HG, et al. Arch Virol. 2017 Apr;162(4):1079-1082. doi: 10.1007/s00705-016-3175-2. Epub 2016 Nov 29. PMID: 27900540 |
4 |
Zulfiqar A, et al. Arch Virol. 2012 Jan;157(1):189-91. doi: 10.1007/s00705-011-1137-2. Epub 2011 Oct 18. PMID: 22006044 |
5 |
Packialakshmi RM, et al. Virus Genes. 2010 Aug;41(1):135-43. doi: 10.1007/s11262-010-0484-5. Epub 2010 Apr 17. PMID: 20401528 |