Verbena mottle virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_018580625.1 |
| Isolate |
Colombia |
| Release date |
2021/6/1 |
| Submitter |
Lopez-Lopez,K., Jara-Tejada,F., Arguello-Astorga,G.R., Vaca-Vaca,J.C. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCTTTTTTCCCCCCCTCCAGGTGGCGCGATCTCCCTCGCCTTCCTGGTGGTCCCATCCTCTTTAATTTGAATTATTGTCGCGCAGCGTTAGTCTCAGCCAATCATATTGCGCCTGACGAGCTTAGATATTTGTAACAACTTGGCGCCCAAGTTGTTAGTGCGTTATAAATTAAAGAGCCCTTGGTCCACTGCCTTTAACTCAAAATGCCTAAGCGGGATGCCCCGTGGCGCTTGTTGGCGGGAACCTCAAAGGTGAGCCGTAATGTCAATTATTCTCCTCGTGCAGGCAGTGGCCCAAAGTTAAACAGGGCCTCAGAATGGGTTAACAGGCCCATGTACAGAAAGCCCAGGATCTATCGAACGCTAAGGACTCCTGACGTGCCCAGAGGATGTGAAGGCCCGTGTAAGGTACAGTCCTACGAACAGCGCCATGACATTTCACATGTTGGCAAGGTAATGTGTATCTCTGATGTCACACGTGGTAATGGTATTACCCACCGTGTTGGCAAGCGTTTCTGTGTTAAGTCTGTGTATATCCTAGGGAAGATATGGATGGATGAAAATATCAAGCTCAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGACCGTAGACCGTATGGCACTCCCATGGATTTTGGCCAGGTGTTTAACATGTTCGACAACGAGCCTAGCACTGCGACGGTGAAGAACGATCTCCGCGATCGTTTTCAGGTCATGCATAAGTTCTATGGGAAGGTGACAGGTGGACAATATGCCAGCAATGAACAGGCAATAGTCAAGCGTTTCTGGAAGGTCAACAATCATGTGGTGTACAATCATCAAGAGGCTGGCAAATATGAGAATCACACTGAGAACGCTTTGTTATTGTATATGGCATGTACGCATGCCTCTAATCCTGTGTATGCAACGTTGAAGATTCGAATCTATTTTTACGATTCGATCACGAATTAATAAAATTTGAATTTTATTGAATGATTTTCCAGAACATAATTTACATACGATCTGGCTGTTGCGAAACGAACAGCTCTAATTACATTGTTAATTGAAATAACGCCTACCTGATCTAAATACATATTAACTAGATGTCTAAACCTATTCAAATAGGTCTGCCCAGAAGCTGTCATCGATATCGTCCAGACTTGGAAGTTCAGGTAGGCCTTGTGGAGATGCAACGCTTTCCTCAGGTTGTAATTGAACCGTATTTGTACGCTGTATATCCTCGTGTTCGTGTACAGTGGATCCTCTACTCTGTACAGTCTGAAATAGAGGGGATTTTCTATCTGCCAGATATACACGCCATTCTCCGCCTGATGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGCCCAGTGCAGCCTATGTGGAAGTAAATAGAGCAACCGCACTCCAGATCAATGCGGCGTCGTCTGACTGATCTCTTCTTGGCCTCCCTGTGTTGCTTCTTGATACAAGGGGGAGTTGAGGGTGATGAAGACCGCATTCTTCAAAGTCCAGTCCCTGAGTGCTGTGTTTTCCTGTTTGTCCAGGAAATCTTTATAGCTGGCACCCTCGCCAGAATTGCAGAGCACGATTGATGGTATCCCACCTTTAATCAGGACTGGCTTTCCGTACTTACAATTTGACTGCCACATCTGTTGGGCCCCGATTAATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATATTCCACTTCGTCTGAGAAAACTCTGGAATTGAAGTCTAGGTGTCCACTCATGTAATTATGTGGGCCTAATGACCGAGCCCACATCGTCTTCCCTGTTCTTGAGTCACCTTCTACTATGAGACTGACTGGCCTCAATGGCCGCGCAGCGGCACTCCTTCCAAAATAGTCGTCTGCCCACTCTTGCATCTCGTCGGGCACGTTAGTGAAAGAGGATAGTGGAAACGGAGGAGACCATGGCTCCGGAGCCTTTTTGAAAATTCTGGATGCGTTAGCAACCAGGTTGTGATGCTGAAGGAAGAAGTGTTGCGGTTGTTCTTCCTTTATGATTTGCAGAGCTTCTTCGGCAGAGGTCGCATTTAACGCCTTGGCATATGTGTCGTTAATTGATTGCTGACCTCCTCTAGCAGATCTGCCGTCGATCTGGAACTTTCCCCATTCAATGGTGTCTCCGTCCTTGTTAATGTAGTACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAAGGTGCTGATCTTGATGGGGAAACCAGATCGAAGAATCTGTTATTCGTGCAGTTGTATTTCCCTTCGAATTGGATAAGCATGTGGAGATGGGGATTCCCATTTTCGTGAAATTCTCTGCAAATCTTGATGTACTTCTTGTTAACTGGGGTTTTCAGAGCTAGAATTTGGGAAAGTGCCTCTTCTTTTGTTAGAGAGCACTCTGGATAAGTGATGAAATAGTTTTTGGCTTTAACTGAGAATGAACCCTTTCGTGGCATTTTTGTAATAATTGATGTACCCCCAATTGCTCAGCTCTCTCAACTCTGCTGTATAATTGGGGGAACTGGGGGTACATATATACTATATCCTTCTAAGGGGATTTTCGGCCATCCGCTATAATATT
Gene Information
|
NCBI Accession
|
YP_010087342.1
|
|
Location
|
218-973 |
|
Gene Name
|
AR1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGCCTAAGCGGGATGCCCCGTGGCGCTTGTTGGCGGGAACCTCAAAGGTGAGCCGTAATGTCAATTATTCTCCTCGTGCAGGCAGTGGCCCAAAGTTAAACAGGGCCTCAGAATGGGTTAACAGGCCCATGTACAGAAAGCCCAGGATCTATCGAACGCTAAGGACTCCTGACGTGCCCAGAGGATGTGAAGGCCCGTGTAAGGTACAGTCCTACGAACAGCGCCATGACATTTCACATGTTGGCAAGGTAATGTGTATCTCTGATGTCACACGTGGTAATGGTATTACCCACCGTGTTGGCAAGCGTTTCTGTGTTAAGTCTGTGTATATCCTAGGGAAGATATGGATGGATGAAAATATCAAGCTCAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGACCGTAGACCGTATGGCACTCCCATGGATTTTGGCCAGGTGTTTAACATGTTCGACAACGAGCCTAGCACTGCGACGGTGAAGAACGATCTCCGCGATCGTTTTCAGGTCATGCATAAGTTCTATGGGAAGGTGACAGGTGGACAATATGCCAGCAATGAACAGGCAATAGTCAAGCGTTTCTGGAAGGTCAACAATCATGTGGTGTACAATCATCAAGAGGCTGGCAAATATGAGAATCACACTGAGAACGCTTTGTTATTGTATATGGCATGTACGCATGCCTCTAATCCTGTGTATGCAACGTTGAAGATTCGAATCTATTTTTACGATTCGATCACGAATTAA |
|
Protein Sequence
|
MPKRDAPWRLLAGTSKVSRNVNYSPRAGSGPKLNRASEWVNRPMYRKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHKFYGKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
|
NCBI Accession
|
YP_010087343.1
|
|
Location
|
970-1368 |
|
Gene Name
|
AL3 |
|
Protein Name
|
replication enhancement protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGCAGATAGAAAATCCCCTCTATTTCAGACTGTACAGAGTAGAGGATCCACTGTACACGAACACGAGGATATACAGCGTACAAATACGGTTCAATTACAACCTGAGGAAAGCGTTGCATCTCCACAAGGCCTACCTGAACTTCCAAGTCTGGACGATATCGATGACAGCTTCTGGGCAGACCTATTTGAATAGGTTTAGACATCTAGTTAATATGTATTTAGATCAGGTAGGCGTTATTTCAATTAACAATGTAATTAGAGCTGTTCGTTTCGCAACAGCCAGATCGTATGTAAATTATGTTCTGGAAAATCATTCAATAAAATTCAAATTTTATTAA |
|
Protein Sequence
|
MDSRTGELITAHQAENGVYIWQIENPLYFRLYRVEDPLYTNTRIYSVQIRFNYNLRKALHLHKAYLNFQVWTISMTASGQTYLNRFRHLVNMYLDQVGVISINNVIRAVRFATARSYVNYVLENHSIKFKFY |
|
NCBI Accession
|
YP_010087344.1
|
|
Location
|
1115-1504 |
|
Gene Name
|
AL2 |
|
Protein Name
|
transactivator protein |
|
Coding Region
|
ATGCGGTCTTCATCACCCTCAACTCCCCCTTGTATCAAGAAGCAACACAGGGAGGCCAAGAAGAGATCAGTCAGACGACGCCGCATTGATCTGGAGTGCGGTTGCTCTATTTACTTCCACATAGGCTGCACTGGGCATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGCAGATAGAAAATCCCCTCTATTTCAGACTGTACAGAGTAGAGGATCCACTGTACACGAACACGAGGATATACAGCGTACAAATACGGTTCAATTACAACCTGAGGAAAGCGTTGCATCTCCACAAGGCCTACCTGAACTTCCAAGTCTGGACGATATCGATGACAGCTTCTGGGCAGACCTATTTGAATAG |
|
Protein Sequence
|
MRSSSPSTPPCIKKQHREAKKRSVRRRRIDLECGCSIYFHIGCTGHGFTHRGTHHCTSGGEWRVYLADRKSPLFQTVQSRGSTVHEHEDIQRTNTVQLQPEESVASPQGLPELPSLDDIDDSFWADLFE |
|
NCBI Accession
|
YP_010087345.1
|
|
Location
|
1416-2501 |
|
Gene Name
|
AL1 |
|
Protein Name
|
replication associated protein |
|
Coding Region
|
ATGCCACGAAAGGGTTCATTCTCAGTTAAAGCCAAAAACTATTTCATCACTTATCCAGAGTGCTCTCTAACAAAAGAAGAGGCACTTTCCCAAATTCTAGCTCTGAAAACCCCAGTTAACAAGAAGTACATCAAGATTTGCAGAGAATTTCACGAAAATGGGAATCCCCATCTCCACATGCTTATCCAATTCGAAGGGAAATACAACTGCACGAATAACAGATTCTTCGATCTGGTTTCCCCATCAAGATCAGCACCTTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTACTACATTAACAAGGACGGAGACACCATTGAATGGGGAAAGTTCCAGATCGACGGCAGATCTGCTAGAGGAGGTCAGCAATCAATTAACGACACATATGCCAAGGCGTTAAATGCGACCTCTGCCGAAGAAGCTCTGCAAATCATAAAGGAAGAACAACCGCAACACTTCTTCCTTCAGCATCACAACCTGGTTGCTAACGCATCCAGAATTTTCAAAAAGGCTCCGGAGCCATGGTCTCCTCCGTTTCCACTATCCTCTTTCACTAACGTGCCCGACGAGATGCAAGAGTGGGCAGACGACTATTTTGGAAGGAGTGCCGCTGCGCGGCCATTGAGGCCAGTCAGTCTCATAGTAGAAGGTGACTCAAGAACAGGGAAGACGATGTGGGCTCGGTCATTAGGCCCACATAATTACATGAGTGGACACCTAGACTTCAATTCCAGAGTTTTCTCAGACGAAGTGGAATATAACGTCATTGATGACGTCGCACCGCACTATCTAAAGCTAAAGCACTGGAAAGAATTAATCGGGGCCCAACAGATGTGGCAGTCAAATTGTAAGTACGGAAAGCCAGTCCTGATTAAAGGTGGGATACCATCAATCGTGCTCTGCAATTCTGGCGAGGGTGCCAGCTATAAAGATTTCCTGGACAAACAGGAAAACACAGCACTCAGGGACTGGACTTTGAAGAATGCGGTCTTCATCACCCTCAACTCCCCCTTGTATCAAGAAGCAACACAGGGAGGCCAAGAAGAGATCAGTCAGACGACGCCGCATTGA |
|
Protein Sequence
|
MPRKGSFSVKAKNYFITYPECSLTKEEALSQILALKTPVNKKYIKICREFHENGNPHLHMLIQFEGKYNCTNNRFFDLVSPSRSAPFHPNIQGAKSSSDVKYYINKDGDTIEWGKFQIDGRSARGGQQSINDTYAKALNATSAEEALQIIKEEQPQHFFLQHHNLVANASRIFKKAPEPWSPPFPLSSFTNVPDEMQEWADDYFGRSAAARPLRPVSLIVEGDSRTGKTMWARSLGPHNYMSGHLDFNSRVFSDEVEYNVIDDVAPHYLKLKHWKELIGAQQMWQSNCKYGKPVLIKGGIPSIVLCNSGEGASYKDFLDKQENTALRDWTLKNAVFITLNSPLYQEATQGGQEEISQTTPH |