Genus | Begomovirus |
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NCBI Assembly | GCF_000874525.1 |
Isolate | Brazil |
Release date | 2015/2/13 |
Submitter | Albuquerque,L.C., Martin,D.P., Avila,A.C., Inoue-Nagata,A.K., Ribeiro,S.G., Daniels,J., Fernandes-Carrijo,F.R. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_001974404.1 |
---|---|
Location | 156-899 |
Gene Name | CP |
Protein Name | AV1 |
Coding Region | ATGCCAAAGCGGGATGCCCCATGGCGTATAATGGCGGGGACCACTAAAGTGTCCCGCTCTTCCAATTATTCACCTCGTGGAGGTATTTCCAAGCGGGATGCTTGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATTTATCGAACGTTGAGAGGCCCTGATGTTCCTAAAGGGTGTGAAGGCCCATGTAAGGTCCAGTCCTACGAGCAGCGTCATGACATTTCTCATCTTGGCAAGGTGATGTGTATCTCTGATATCACACGTGGTAATTGTATTACACACCGTGTCGGTAAGCGTTTCTGTGTTAAGTCCGTATACATTTTAGGGAAGATATGGATGGACGAAAATATTAAATTGAAAAACCACACGAACAGCGTCATCTTCTGGTTGGTAAGGGATCGGAGACCGTATGGGACACCTATGGATTTTGGCCAAGTGTTTAATATGTTTGATAATGAGCCTAGTACTGCTACTGTGAAGAACGATCTTCGTGATCGGTTTCAAGTCATGCATAGGTTTAATGCTAAGGTTACGGGTGGACAGTATGCTAGCAACGAGCAAGCTCTTGTGCGGCGTTTCTGGAAGGTCAACAATCATGTGGTCTACAACCATCAGGAAGCAGGGAAATATGAGAATCACACGGAGAACGCTTTGTTATTGTATATGGCATGTACACATGCTTCTAACCCACTGTATGCAACTTTGAAAATTCGGATCTATTTTTATGATTCGATTACAAATTAA |
Protein Sequence | MPKRDAPWRIMAGTTKVSRSSNYSPRGGISKRDAWVNRPMYRKPRIYRTLRGPDVPKGCEGPCKVQSYEQRHDISHLGKVMCISDITRGNCITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHRFNAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPLYATLKIRIYFYDSITN |
NCBI Accession | YP_001974405.1 |
---|---|
Location | 896-1294 |
Gene Name | REn |
Protein Name | AC3 |
Coding Region | ATGGATTCACGCACCGGGGAACTCATCACTGCGCCTCAAGCAGCGAATGGCGTCTTTATTTGGGAGATTACCAATCCCCTCTATTTCAAGATAATCAACGTAGAGGACCCCCTCTACACAACGACACGGATATACCATCTACAGATACGTTTCAACCACAACCTGCGGAAAGCGTTGGATCTCCACAAGGCTTTTCTCAATTTCCAAGTCTGGACGACATCCCTGAGAGCTTCTGGGATGACATATTTAAGTAGATTTAAGTATTTAGTCTTATTGTATTTAAACCAATTAGGTGTTATTTCCGTTAATAATGTAATCAGAGCTGTTCGTTTCGCAACAGACAAATCTTATGTAAATTATGTACTTGAAAATCATTCAATAAAATTTAGACTTTATTAA |
Protein Sequence | MDSRTGELITAPQAANGVFIWEITNPLYFKIINVEDPLYTTTRIYHLQIRFNHNLRKALDLHKAFLNFQVWTTSLRASGMTYLSRFKYLVLLYLNQLGVISVNNVIRAVRFATDKSYVNYVLENHSIKFRLY |
NCBI Accession | YP_001974406.1 |
---|---|
Location | 1041-1430 |
Gene Name | TrAP |
Protein Name | AC2 |
Coding Region | ATGCTAAATACATCTTCCTCAACTCCCCCCTCTATCAAACCACGACACAGAGCAGCCAAACGGAAGGTAATTCGCCGAAGACGCATTGACCTAAACTGCGGCTGCTCCATTTACATCCATCTCAACTGTCGCAACAATGGATTCACGCACCGGGGAACTCATCACTGCGCCTCAAGCAGCGAATGGCGTCTTTATTTGGGAGATTACCAATCCCCTCTATTTCAAGATAATCAACGTAGAGGACCCCCTCTACACAACGACACGGATATACCATCTACAGATACGTTTCAACCACAACCTGCGGAAAGCGTTGGATCTCCACAAGGCTTTTCTCAATTTCCAAGTCTGGACGACATCCCTGAGAGCTTCTGGGATGACATATTTAAGTAG |
Protein Sequence | MLNTSSSTPPSIKPRHRAAKRKVIRRRRIDLNCGCSIYIHLNCRNNGFTHRGTHHCASSSEWRLYLGDYQSPLFQDNQRRGPPLHNDTDIPSTDTFQPQPAESVGSPQGFSQFPSLDDIPESFWDDIFK |
NCBI Accession | YP_001974407.1 |
---|---|
Location | 1342-2427 |
Gene Name | Rep |
Protein Name | AC1 |
Coding Region | ATGCCCCTTCCAAAGCGTTTCTTAGTAAATGCAAAAAATTTCTTCCTTACATATCCTCATTGTTCATTAACTAAAGACGAAGCTCTTTCACAATTACAGGCACTTCAAACACCTACCAACAAGAAATTTATTCGCGTAACCAGAGAACTTCACGAAGATGGGGAACCTCATCTCCACGTGCTTATACAGTTCGAAGGCAAATTCAAATGCCACAATCAACGATTCTTCGATTTGGTATCCCCAACCAGATCAGCACATTTCCATCCAAACATTCAGGGAGCTAAAAGCTCGTCAGACGTCAAGACCTACATGGAGAAAGACGGAGACTTCATTGATTTTGGAACTTTCCAGATCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCAAACGACACTTATGCCAAGGTTCTCAACGCAGATAATCCAACCACGGCACTCAATATATTAAAAGAAGAGCAACCTCGAGATTATGTTCTACATCTGGATAAAATAAGAACACATGTCCAGAGAATATTTGCAAAGGCTCCAGAGCCATGGGTTTCTCCGTTTCAACTTTCCTCCTTCACTAATGTTCCTGACGAGATGCAAGAGTGGGCTGACGAATATTTCGGAAGGGGTGCCGCTGCGCGGCCGGAGAGACCTATTAGTATTATAATTGAGGGTGATAGTCGTACAGGAAAGACGATGTGGGCTCGTGCATTAGGCCCACATAATTATCTGAGTGGACATCTAGATTTTAATTCTAGGGTTTATTCAAATGAGGTGCATTATAACGTCATTGATGATGTCACTCCGCAATACCTAAAGCTAAAACATTGGAAAGAGCTCATTGGGGCCCAACGTGACTGGCAAAGCAACTGCAAATACGGGAAGCCAGTTCAAATTAAAGGAGGAATCCCATCAATCGTGCTCTGCAATCCAGGAGAGGGGGCTAGTTATAAAGACTTCCTAGACAAACATGAAAATATATCTTTAAAAACGTGGACACTGCATAATGCTAAATACATCTTCCTCAACTCCCCCCTCTATCAAACCACGACACAGAGCAGCCAAACGGAAGGTAATTCGCCGAAGACGCATTGA |
Protein Sequence | MPLPKRFLVNAKNFFLTYPHCSLTKDEALSQLQALQTPTNKKFIRVTRELHEDGEPHLHVLIQFEGKFKCHNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKTYMEKDGDFIDFGTFQIDGRSARGGCQSANDTYAKVLNADNPTTALNILKEEQPRDYVLHLDKIRTHVQRIFAKAPEPWVSPFQLSSFTNVPDEMQEWADEYFGRGAAARPERPISIIIEGDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEVHYNVIDDVTPQYLKLKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKHENISLKTWTLHNAKYIFLNSPLYQTTTQSSQTEGNSPKTH |
NCBI Accession | YP_001974408.1 |
---|---|
Location | 1977-2270 |
Gene Name | AC4 |
Protein Name | AC4 |
Coding Region | ATGGGGAACCTCATCTCCACGTGCTTATACAGTTCGAAGGCAAATTCAAATGCCACAATCAACGATTCTTCGATTTGGTATCCCCAACCAGATCAGCACATTTCCATCCAAACATTCAGGGAGCTAAAAGCTCGTCAGACGTCAAGACCTACATGGAGAAAGACGGAGACTTCATTGATTTTGGAACTTTCCAGATCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCAAACGACACTTATGCCAAGGTTCTCAACGCAGATAATCCAACCACGGCACTCAATATATTAA |
Protein Sequence | MGNLISTCLYSSKANSNATINDSSIWYPQPDQHISIQTFRELKARQTSRPTWRKTETSLILELSRSMEDQLEEVANLQTTLMPRFSTQIIQPRHSIY |
NCBI Accession | YP_001974409.1 |
---|---|
Location | 402-1172 |
Gene Name | NSP |
Protein Name | BV1 |
Coding Region | ATGTATATTAATAAGTATAGACGTGGCTGGATATCTAATCAACGACGAGGCTATTCACGTCAGTCTTTCTTCAAGCGTTCTTATTATGTTAAACGTACAGATGGGAAACGTCGATCGAGTAGCACGACTCAAGTCAATGAGGAGAGCAGATTGTCACAACAGCGAATTCATGAGAACCAGTTTGGTCCAGAATTTGTAATGGTTCATAATACAGCCGTATCAACCTTTATTACTTTCCCCAATCTTGGTAAAACTGAACCGAATCGATCTAGGTCATATATAAAGTTGAAACGTTTGCGTTTCAAAGGTACTGTTAAAATTGAACGTTTGCATACTGATATGAAAATGGACTGTATAATTCCAAATATCGAAGGAGTGTTTTCGTTGGTCATCGTAGTTGATCGTAAACCCCATTTGAATCCAACAGGATGTCTACATACATTTGATGAGCTATTTGGTGCACGAATACACAGTCATGGCAATTTAGCTATAACCGCATCTCTGAAAGACCGATTTTACATACGTCATGTTTGGAAGAAAGTAATATCTGTTGAGAAAGATAGCATGATGGTTGATCTTGAAGGAACGACATCACTATCTAACAAGCGTTATAATTGTTGGTCAGCTTTTAAGGATCTTGATCATGATTCATGTAATGGGGTTTATGCGAATATAAGCAAGAACGCCCTTTTAGTTTACTATTGTTGGATGTCTGATACCATGTCTACAGCATCCTCATTTGTATCGTTTGATCTTGATTATGTGGGTTAA |
Protein Sequence | MYINKYRRGWISNQRRGYSRQSFFKRSYYVKRTDGKRRSSSTTQVNEESRLSQQRIHENQFGPEFVMVHNTAVSTFITFPNLGKTEPNRSRSYIKLKRLRFKGTVKIERLHTDMKMDCIIPNIEGVFSLVIVVDRKPHLNPTGCLHTFDELFGARIHSHGNLAITASLKDRFYIRHVWKKVISVEKDSMMVDLEGTTSLSNKRYNCWSAFKDLDHDSCNGVYANISKNALLVYYCWMSDTMSTASSFVSFDLDYVG |
NCBI Accession | YP_001974410.1 |
---|---|
Location | 1306-2187 |
Gene Name | MP |
Protein Name | BC1 |
Coding Region | ATGGATTCTCAAATAGTTTGCCCACCAAACGCCTTTAATTATATAGAATCTCGTCGTGATGAATATCAGCTATCTCACGACCTTACGGAAATCATATTGCAGTTTCCTTCAAAAGCGACTCAATTAAGTGCAAGACTAAATAGAAGCTGTATGAAGATTGACCATTGCGTCATAGAATATAGGCAACAGGTACCCATAAACGCAACAGGATCAGTAATTGTGGAGATTCATGACCAGAGGATGACTGAAAATGAATCATTACAGGCGTCATGGACTTTTCCTATAAGATGCAACATAGATCTCCACTATTTCTCATCGTCATTCTTCTCCCTCAAAGACCCAATTCCATGGAAGCTATATTATAAGGTTTGTGATTCAAATGTTCATCAGATGACACACTTCGCAAAATTCAAAGGGAAGCTGAAGCTATCAACTGCAAAACATTCGGTTGATATACCTTTCAGAGCACCCACAGTAAAGATAATGTCCAAACAATTTACCGTAAATGACATCGACTTTTCTCATGTGGGTTATGGGAAGTGGGAGAGGAAATTGATAAGATCCGCATCCACTTCTAGATTTGGGCTTCCCGGCCCAATAGAATTAAACCCAGGAGAGTCTTGGGCCACACGGAGTACAATAGGGCCGGCCCAGTTAGAAGCAGAATCAGATATTGCTGAAGTGTTACATCCATACAAGGATCTTAACAGGTTGGGCACTGCCATCTTAGACCCAGGTGATTCGGCTTCAATAATTGGGGCCCAAAGAACGCAATCGAATATAACACTATCAATGGCCCAATTAAACGATCTTGTTAGGACGACGGTCCAAGAATGTATTAAAACTAATTGTATTCCTTCACAGCCCAAATCTTTGAAATAA |
Protein Sequence | MDSQIVCPPNAFNYIESRRDEYQLSHDLTEIILQFPSKATQLSARLNRSCMKIDHCVIEYRQQVPINATGSVIVEIHDQRMTENESLQASWTFPIRCNIDLHYFSSSFFSLKDPIPWKLYYKVCDSNVHQMTHFAKFKGKLKLSTAKHSVDIPFRAPTVKIMSKQFTVNDIDFSHVGYGKWERKLIRSASTSRFGLPGPIELNPGESWATRSTIGPAQLEAESDIAEVLHPYKDLNRLGTAILDPGDSASIIGAQRTQSNITLSMAQLNDLVRTTVQECIKTNCIPSQPKSLK |
1 |
Dos Reis LNA, et al. Virus Genes. 2021 Feb;57(1):127-131. doi: 10.1007/s11262-020-01810-z. Epub 2020 Nov 19. PMID: 33211226 |
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2 |
Characterization of tomato yellow vein streak virus, a begomovirus from Brazil. Albuquerque LC, et al. Virus Genes. 2010 Feb;40(1):140-7. doi: 10.1007/s11262-009-0426-2. Epub 2009 Nov 24. PMID: 19937269 |
3 |
Tomato mottle wrinkle virus, a recombinant begomovirus infecting tomato in Argentina. Vaghi Medina CG, et al. Arch Virol. 2015 Feb;160(2):581-5. doi: 10.1007/s00705-014-2216-y. Epub 2014 Sep 25. PMID: 25252814 |
4 |
Rapid detection of fifteen known soybean viruses by dot-immunobinding assay. Ali A. J Virol Methods. 2017 Nov;249:126-129. doi: 10.1016/j.jviromet.2017.09.003. Epub 2017 Sep 6. PMID: 28887190 |
5 |
Bornancini VA, et al. Viruses. 2020 Feb 11;12(2):202. doi: 10.3390/v12020202. PMID: 32054104 |
6 |
Souza-Dias JAC, et al. Plant Dis. 2008 Mar;92(3):487. doi: 10.1094/PDIS-92-3-0487C. PMID: 30769698 |
7 |
Diversity and prevalence of Brazilian bipartite begomovirus species associated to tomatoes. Fernandes FR, et al. Virus Genes. 2008 Feb;36(1):251-8. doi: 10.1007/s11262-007-0184-y. Epub 2008 Jan 4. PMID: 18175211 |
8 |
A New Geminivirus Associated with Tomato in the State of São Paulo, Brazil. Faria JC, et al. Plant Dis. 1997 Apr;81(4):423. doi: 10.1094/PDIS.1997.81.4.423B. PMID: 30861828 |
9 |
Reyna PG, et al. Arch Virol. 2021 May;166(5):1409-1414. doi: 10.1007/s00705-021-05002-4. Epub 2021 Feb 28. PMID: 33646405 |
10 |
Ribeiro SG, et al. Plant Dis. 1998 Jul;82(7):830. doi: 10.1094/PDIS.1998.82.7.830C. PMID: 30856961 |