Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000865405.1 |
Isolate | Brazil |
Release date | 2015/2/13 |
Submitter | Fernandes,J.J., Carvalho,M.G., Andrade,E.C., Brommonschenkel,S.H., Fontes,E.P.B., Zerbini,F.M., Calegario,R.F., Ferreira,S.S. |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_459913.1 |
---|---|
Location | 263-1018 |
Gene Name | CP |
Protein Name | coat protein |
Coding Region | ATGCCTAAGCGGGGTCCCTCATGGCGCCCAATGGTGGGGACCTCAAAGGTAAGCCGCACTTCTAATTTCTCTCCTCGTGGAGGTATAGGCCCAAAATTCAACAAGGCCTCTGAATGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATATATCGTACGCTCAGAACGCCCGATGTTCCCAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCTTACGAGCAACGTCACGATATCTCCCATGTTGGGAAGGTTATGTGTATATCCGATATTACGCGCGGCAACGGTATTACTCACCGGGTCGGTAAGCGTTTCTGTGTTAAGTCCGTGTATATTTTAGGCAAGGTATGGATGGACGAGAATATCAAGCTCAAGAACCACACGAACAGTTGCATGTTCTGGTTGGTCAGAGACCGAAGACCCTATGGAACGCCAATGGATTTTGGCCAGGTGTTCAACATGTTTGACAACGAGCCCAGTACTGCAACCGTGAAGAACGATCTCCGTGATCGTTTCCAGGTCATGCACAAGTTCTATGCCAAGGTCACTGGTGGACAGTATGCCAGCAATGAGCAGGCGCTAGTCAAGCGGTTCTGGAAGGTCAACAACCATGTGGTCTACAATCACCAGGAGGCTGGCAAGTACGAGAACCACACGGAGAACGCATTATTATTGTATATGGCATGTACTCATGCATCTAACCCTGTGTATGCAACGCTGAAGATTCGAATCTATTTCTATGATTCAATCACAAATTAA |
Protein Sequence | MPKRGPSWRPMVGTSKVSRTSNFSPRGGIGPKFNKASEWVNRPMYRKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDITRGNGITHRVGKRFCVKSVYILGKVWMDENIKLKNHTNSCMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
NCBI Accession | YP_459914.1 |
---|---|
Location | 1015-1413 |
Gene Name | Ren |
Protein Name | replication enhancer protein |
Coding Region | ATGGATTCACGCACCGGGGAACTCATCACTGTGCCTCAGGCAGAGAATGGCGTTTATATCTGGGAGATATCAAATCCCCTGTATTTCAAGATCTACCTAGTAGAAGAAATAATGTACACAACGACCAAAGTGTACCACATCCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGATCTCCACCAGGCATTCCTGAACTTCCAAGTCTGGACGACATCTCTGACAGCTTCTGGAACGACTTATTTGCATAGGTTTAGACACTTAGTCATGTTGTATTTAGACCGATTAGGCATTATTACGATAAACAATGTAATTAGAGCTGTTCGTTTTGCGACTGACAGATCATATGTAAATCATGTACTGGAAAATCATTCAATAAAATTCAAAATTTATTAA |
Protein Sequence | MDSRTGELITVPQAENGVYIWEISNPLYFKIYLVEEIMYTTTKVYHIQIRFNHNLRRALDLHQAFLNFQVWTTSLTASGTTYLHRFRHLVMLYLDRLGIITINNVIRAVRFATDRSYVNHVLENHSIKFKIY |
NCBI Accession | YP_459915.1 |
---|---|
Location | 1160-1549 |
Gene Name | Trap |
Protein Name | trans-activating protein |
Coding Region | ATGCTAAATTCATCTTCATCGACTCCCCCCTCTATCAAACCACAACACAGGGCGGCGAAGAGAAGAGGAACTCGCCGTAGAAGGATAGATCTAGAGTGTGGATGCACTATATACGTCCACATCAGCTGCAGCAACCATGGATTCACGCACCGGGGAACTCATCACTGTGCCTCAGGCAGAGAATGGCGTTTATATCTGGGAGATATCAAATCCCCTGTATTTCAAGATCTACCTAGTAGAAGAAATAATGTACACAACGACCAAAGTGTACCACATCCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGATCTCCACCAGGCATTCCTGAACTTCCAAGTCTGGACGACATCTCTGACAGCTTCTGGAACGACTTATTTGCATAG |
Protein Sequence | MLNSSSSTPPSIKPQHRAAKRRGTRRRRIDLECGCTIYVHISCSNHGFTHRGTHHCASGREWRLYLGDIKSPVFQDLPSRRNNVHNDQSVPHPDTVQPQPQESVGSPPGIPELPSLDDISDSFWNDLFA |
NCBI Accession | YP_459916.1 |
---|---|
Location | 1470-2549 |
Gene Name | Rep |
Protein Name | replication-associated protein |
Coding Region | ATGCCATCAGCTCCTAAAAGATTTCGTATTTCTTCAAAAAACTACTTCCTCACATATCCTCGTTGTTCTCTCTCTAAAGAAGAGACACTTTCCCAATTACAAACCATAAATACTCCAACAAATAAGAAATTCATTAAAATCTGCAGAGAGCTTCACGAAGATGGGGAACCTCATCTCCACGTGCTTATCCAGTTCGAAGGGAAGTTCGTCTGCACAAATCAAAGACTCTTCGACCTGGTATCCCAAACAAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGACGTCAAGTCCTACATCGACAAAGACGGAGATACTCTCGAATGGGGGAAATTCCAGGTCGACGGACGAAGTGCTAGAGGAGGTCAGCATACGGCTAATGACGCTGCAGCTGAGGCGTTAAATGCTCCGGATAAACGAACGGCTCTTCAAATAATTAAAGAGAAGTTGCCGGAGAAATATCTTTTTCAATTTCATAATTTAAATTCTAATTTAGATAGAATTTTCTCAAAGGCTCCGGAGCCATGGGTTCCTCCGTTTCCCCTCTCCTCCTTCACTAACGTTCCCGACGAGATGCAAGAGTGGGCCGATGAATATTTTGGGAGAGGTTCAGCTGCGCGGCCATTGAGACCTAAGAGTTTGATAGTCGAAGGTGATTCAAGGACAGGGAAGACGATGTGGGCTCGTGCATTAGGCCCACATAATTACTTGAGTGGCCATCTGGACTTCAACTCAAAGGTTTTCTCGAACGAAGTGGAGTATAACGTCATTGATGACGTCGCACCGCATTATCTAAAGTTAAAGCACTGGAAGGAATTGATTGGTGCTCAAAAAGACTGGCAGTCAAATTGCAAATACGGAAAGCCAGTTCAAATTACAGTTGGCATCCCAGCAATCGTGCTCTGCAATCCTGGTGAGGGAGTCAGTTATAAAGATTTCCTCGACAAAGAAGAGAATGCAGCTTTAAAATCGTGGACACTTCACAATGCTAAATTCATCTTCATCGACTCCCCCCTCTATCAAACCACAACACAGGGCGGCGAAGAGAAGAGGAACTCGCCGTAG |
Protein Sequence | MPSAPKRFRISSKNYFLTYPRCSLSKEETLSQLQTINTPTNKKFIKICRELHEDGEPHLHVLIQFEGKFVCTNQRLFDLVSQTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGKFQVDGRSARGGQHTANDAAAEALNAPDKRTALQIIKEKLPEKYLFQFHNLNSNLDRIFSKAPEPWVPPFPLSSFTNVPDEMQEWADEYFGRGSAARPLRPKSLIVEGDSRTGKTMWARALGPHNYLSGHLDFNSKVFSNEVEYNVIDDVAPHYLKLKHWKELIGAQKDWQSNCKYGKPVQITVGIPAIVLCNPGEGVSYKDFLDKEENAALKSWTLHNAKFIFIDSPLYQTTTQGGEEKRNSP |
NCBI Accession | YP_459917.1 |
---|---|
Location | 498-1268 |
Gene Name | NSP |
Protein Name | nuclear shuttle protein |
Coding Region | ATGTATCAAGCCAAGTATAGACGTGGGTTATCTACAAATTATCGTCGTAATTACACGCGAAATGCCGTTCTCAAGCGTTCTTATGGCGTAAAGTTTAGCAATGTGAGACGACGTCCAAGTAATCATAACAGGGCCCATGAAGATGTTAAGATGGCAGCCCAGCGTATACATGAGAACCAGTTTGGGCCTGAGTTTGTTATGGGCCATAATTCAGCCATTTCAACGTTTATCACCTTTCCTAGCCTCGGTAAGATCGAACCTAATCGAACCAGGTCCTATGTCAAGCTAAAACGACTCCGATTTAAGGGCACTGTGAAGATTGAACGTGTTCAAAACGATGTCATCATGGATGGTTCAGCCCCGAAGATTGAAGGAGTCTTTTCACTAGTGGTCGTGGTGGATCGTAAACCCCACTTGGGATCATCTGGGTGTTTGTATACGTTTGACGAGTTATTCGGTGCCAGGATCAACAGTCATGGCAATCTAGCCATAACATCCTCACTGAAAGACCGGTTTTATATTCGACACGTGTTCAAACGTGTATTGTCTGTGGAGAAGGATACGTTAATGGTTGATCTTGAAGGGACTACATCTCTCTCTAACAGGCGTTTTAATTGTTGGTCTACGTTTAAGGATATAGACCGTGATTCATGTAACGGTGTTTATGCAAACATAAGCAAGAACGCCCTCTTAGTTTATTACTGCTGGATGTCGGACTCGTCGTCCAAGGCATCGACATTTGTATCGTATGATCTTGATTATATTGGTTAA |
Protein Sequence | MYQAKYRRGLSTNYRRNYTRNAVLKRSYGVKFSNVRRRPSNHNRAHEDVKMAAQRIHENQFGPEFVMGHNSAISTFITFPSLGKIEPNRTRSYVKLKRLRFKGTVKIERVQNDVIMDGSAPKIEGVFSLVVVVDRKPHLGSSGCLYTFDELFGARINSHGNLAITSSLKDRFYIRHVFKRVLSVEKDTLMVDLEGTTSLSNRRFNCWSTFKDIDRDSCNGVYANISKNALLVYYCWMSDSSSKASTFVSYDLDYIG |
NCBI Accession | YP_459918.1 |
---|---|
Location | 1340-2221 |
Gene Name | MP |
Protein Name | movement protein |
Coding Region | ATGGATTCTCAGTTAGTTAATCCACCAAATGCCTTTAATTATATAGAATCTCAGCGTGATGAATATAAGCTTTCGCATGATCTAACTGAGATCGTTCTGCAGTTTCCTTCTGCAGCGGCTCATATAAGCGCCAGACTCAGCCGTAGCTGTATGAAGATAGACCACTGCGTCATAGAATACCGGCAACAGGTACCCATAAACGCCGCAGGTTCCGTTATCGTGGAGATTCACGACAAGAGAATGACGGACAATGAATCGTTACAGGCGTCATGGACATTCCCGATCAGATGCAACATAGATCTCCACTATTTCTCCTGTTCATTCTTCTCCCTCAAAGACCCAATACCGTGGAAATTGTACTACAGAGTGAGCGACACGAATGTTCACCAGAGCATCCACTTCGCGAAATTCAAGGGGAAGTTGAAACTGTCGACGGCTAAACATTCGGTGGATATTGCTTTCCGAGCACCGACGGTCAAGATCTTATCTAAACAGTTCACGGATAGAGATGTAGATTTCAGCCACGTGGGCTACGGGAAATGGGAAAGGAAATTGATCAGATCCGCTTCAACTGTCAAGTATGGGCTACCAAGCCCAATAACAATTGATCCAGGCGAGACATGGGCTTCGCGCAGTACGCTGGGGATCGGTCAATCGAGTACGGAATCAGAGGTGGAGAACGCAGCACACCCATATCGAGGACTACACAGATTGGGAACCACCATGTTAGACCCAGGCGACTCGGCCTCAATAGTTGCTGCGAGAAGGGCCCAATCGCATATAACCATGTCAGAGGCCCAAATAAACGACCTAGTGAGGAATGCGGTCCAAGAGTGTATAAAAACAAATTGTATTCCCCCAGAGSCCAAATCATTGAGTTAA |
Protein Sequence | MDSQLVNPPNAFNYIESQRDEYKLSHDLTEIVLQFPSAAAHISARLSRSCMKIDHCVIEYRQQVPINAAGSVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYFSCSFFSLKDPIPWKLYYRVSDTNVHQSIHFAKFKGKLKLSTAKHSVDIAFRAPTVKILSKQFTDRDVDFSHVGYGKWERKLIRSASTVKYGLPSPITIDPGETWASRSTLGIGQSSTESEVENAAHPYRGLHRLGTTMLDPGDSASIVAARRAQSHITMSEAQINDLVRNAVQECIKTNCIPPEXKSLS |
1 |
First Report of Tomato yellow spot virus Infecting Leonurus sibiricus in Brazil. Barbosa JC, et al. Plant Dis. 2013 Feb;97(2):289. doi: 10.1094/PDIS-07-12-0692-PDN. PMID: 30722321 |
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2 |
Fernandes-Acioli NAN, et al. Plant Dis. 2014 Oct;98(10):1445. doi: 10.1094/PDIS-11-12-1016-PDN. PMID: 30703991 |
3 |
Andrade EC, et al. J Gen Virol. 2006 Dec;87(Pt 12):3687-3696. doi: 10.1099/vir.0.82279-0. PMID: 17098986 |
4 |
Qiao N, et al. Genes Genomics. 2023 Jan;45(1):23-37. doi: 10.1007/s13258-022-01325-x. Epub 2022 Nov 12. PMID: 36371493 |
5 |
Leibman D, et al. Arch Virol. 2015 Nov;160(11):2727-39. doi: 10.1007/s00705-015-2551-7. Epub 2015 Aug 9. PMID: 26255053 |
6 |
Nava A, et al. Arch Virol. 2013 Feb;158(2):399-406. doi: 10.1007/s00705-012-1501-x. Epub 2012 Oct 14. PMID: 23064695 |
7 |
Occurrence of Impatiens necrotic spot virus and Tomato spotted wilt virus on Potatoes in Iran. Pourrahim R, et al. Plant Dis. 2012 May;96(5):771. doi: 10.1094/PDIS-01-12-0051-PDN. PMID: 30727561 |
8 |
First Report of Tomato yellow ring virus (Tospovirus, Bunyaviridae) Infecting Tomato in Kenya. Birithia R, et al. Plant Dis. 2012 Sep;96(9):1384. doi: 10.1094/PDIS-05-12-0462-PDN. PMID: 30727189 |
9 |
First Report of Tomato torrado virus Infecting Tomato in Colombia. Verbeek M, et al. Plant Dis. 2012 Apr;96(4):592. doi: 10.1094/PDIS-11-11-1000. PMID: 30727407 |
10 |
Sabra A, et al. Plants (Basel). 2022 Nov 18;11(22):3157. doi: 10.3390/plants11223157. PMID: 36432886 |