| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_000865405.1 |
| Isolate | Brazil |
| Release date | 2015/2/13 |
| Submitter | Fernandes,J.J., Carvalho,M.G., Andrade,E.C., Brommonschenkel,S.H., Fontes,E.P.B., Zerbini,F.M., Calegario,R.F., Ferreira,S.S. |
| Download | Genome |GFF3 |PEP |CDS |
| NCBI Accession | YP_459913.1 |
|---|---|
| Location | 263-1018 |
| Gene Name | CP |
| Protein Name | coat protein |
| Coding Region | ATGCCTAAGCGGGGTCCCTCATGGCGCCCAATGGTGGGGACCTCAAAGGTAAGCCGCACTTCTAATTTCTCTCCTCGTGGAGGTATAGGCCCAAAATTCAACAAGGCCTCTGAATGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATATATCGTACGCTCAGAACGCCCGATGTTCCCAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCTTACGAGCAACGTCACGATATCTCCCATGTTGGGAAGGTTATGTGTATATCCGATATTACGCGCGGCAACGGTATTACTCACCGGGTCGGTAAGCGTTTCTGTGTTAAGTCCGTGTATATTTTAGGCAAGGTATGGATGGACGAGAATATCAAGCTCAAGAACCACACGAACAGTTGCATGTTCTGGTTGGTCAGAGACCGAAGACCCTATGGAACGCCAATGGATTTTGGCCAGGTGTTCAACATGTTTGACAACGAGCCCAGTACTGCAACCGTGAAGAACGATCTCCGTGATCGTTTCCAGGTCATGCACAAGTTCTATGCCAAGGTCACTGGTGGACAGTATGCCAGCAATGAGCAGGCGCTAGTCAAGCGGTTCTGGAAGGTCAACAACCATGTGGTCTACAATCACCAGGAGGCTGGCAAGTACGAGAACCACACGGAGAACGCATTATTATTGTATATGGCATGTACTCATGCATCTAACCCTGTGTATGCAACGCTGAAGATTCGAATCTATTTCTATGATTCAATCACAAATTAA |
| Protein Sequence | MPKRGPSWRPMVGTSKVSRTSNFSPRGGIGPKFNKASEWVNRPMYRKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDITRGNGITHRVGKRFCVKSVYILGKVWMDENIKLKNHTNSCMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
| NCBI Accession | YP_459914.1 |
|---|---|
| Location | 1015-1413 |
| Gene Name | Ren |
| Protein Name | replication enhancer protein |
| Coding Region | ATGGATTCACGCACCGGGGAACTCATCACTGTGCCTCAGGCAGAGAATGGCGTTTATATCTGGGAGATATCAAATCCCCTGTATTTCAAGATCTACCTAGTAGAAGAAATAATGTACACAACGACCAAAGTGTACCACATCCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGATCTCCACCAGGCATTCCTGAACTTCCAAGTCTGGACGACATCTCTGACAGCTTCTGGAACGACTTATTTGCATAGGTTTAGACACTTAGTCATGTTGTATTTAGACCGATTAGGCATTATTACGATAAACAATGTAATTAGAGCTGTTCGTTTTGCGACTGACAGATCATATGTAAATCATGTACTGGAAAATCATTCAATAAAATTCAAAATTTATTAA |
| Protein Sequence | MDSRTGELITVPQAENGVYIWEISNPLYFKIYLVEEIMYTTTKVYHIQIRFNHNLRRALDLHQAFLNFQVWTTSLTASGTTYLHRFRHLVMLYLDRLGIITINNVIRAVRFATDRSYVNHVLENHSIKFKIY |
| NCBI Accession | YP_459915.1 |
|---|---|
| Location | 1160-1549 |
| Gene Name | Trap |
| Protein Name | trans-activating protein |
| Coding Region | ATGCTAAATTCATCTTCATCGACTCCCCCCTCTATCAAACCACAACACAGGGCGGCGAAGAGAAGAGGAACTCGCCGTAGAAGGATAGATCTAGAGTGTGGATGCACTATATACGTCCACATCAGCTGCAGCAACCATGGATTCACGCACCGGGGAACTCATCACTGTGCCTCAGGCAGAGAATGGCGTTTATATCTGGGAGATATCAAATCCCCTGTATTTCAAGATCTACCTAGTAGAAGAAATAATGTACACAACGACCAAAGTGTACCACATCCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGATCTCCACCAGGCATTCCTGAACTTCCAAGTCTGGACGACATCTCTGACAGCTTCTGGAACGACTTATTTGCATAG |
| Protein Sequence | MLNSSSSTPPSIKPQHRAAKRRGTRRRRIDLECGCTIYVHISCSNHGFTHRGTHHCASGREWRLYLGDIKSPVFQDLPSRRNNVHNDQSVPHPDTVQPQPQESVGSPPGIPELPSLDDISDSFWNDLFA |
| NCBI Accession | YP_459916.1 |
|---|---|
| Location | 1470-2549 |
| Gene Name | Rep |
| Protein Name | replication-associated protein |
| Coding Region | ATGCCATCAGCTCCTAAAAGATTTCGTATTTCTTCAAAAAACTACTTCCTCACATATCCTCGTTGTTCTCTCTCTAAAGAAGAGACACTTTCCCAATTACAAACCATAAATACTCCAACAAATAAGAAATTCATTAAAATCTGCAGAGAGCTTCACGAAGATGGGGAACCTCATCTCCACGTGCTTATCCAGTTCGAAGGGAAGTTCGTCTGCACAAATCAAAGACTCTTCGACCTGGTATCCCAAACAAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGACGTCAAGTCCTACATCGACAAAGACGGAGATACTCTCGAATGGGGGAAATTCCAGGTCGACGGACGAAGTGCTAGAGGAGGTCAGCATACGGCTAATGACGCTGCAGCTGAGGCGTTAAATGCTCCGGATAAACGAACGGCTCTTCAAATAATTAAAGAGAAGTTGCCGGAGAAATATCTTTTTCAATTTCATAATTTAAATTCTAATTTAGATAGAATTTTCTCAAAGGCTCCGGAGCCATGGGTTCCTCCGTTTCCCCTCTCCTCCTTCACTAACGTTCCCGACGAGATGCAAGAGTGGGCCGATGAATATTTTGGGAGAGGTTCAGCTGCGCGGCCATTGAGACCTAAGAGTTTGATAGTCGAAGGTGATTCAAGGACAGGGAAGACGATGTGGGCTCGTGCATTAGGCCCACATAATTACTTGAGTGGCCATCTGGACTTCAACTCAAAGGTTTTCTCGAACGAAGTGGAGTATAACGTCATTGATGACGTCGCACCGCATTATCTAAAGTTAAAGCACTGGAAGGAATTGATTGGTGCTCAAAAAGACTGGCAGTCAAATTGCAAATACGGAAAGCCAGTTCAAATTACAGTTGGCATCCCAGCAATCGTGCTCTGCAATCCTGGTGAGGGAGTCAGTTATAAAGATTTCCTCGACAAAGAAGAGAATGCAGCTTTAAAATCGTGGACACTTCACAATGCTAAATTCATCTTCATCGACTCCCCCCTCTATCAAACCACAACACAGGGCGGCGAAGAGAAGAGGAACTCGCCGTAG |
| Protein Sequence | MPSAPKRFRISSKNYFLTYPRCSLSKEETLSQLQTINTPTNKKFIKICRELHEDGEPHLHVLIQFEGKFVCTNQRLFDLVSQTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGKFQVDGRSARGGQHTANDAAAEALNAPDKRTALQIIKEKLPEKYLFQFHNLNSNLDRIFSKAPEPWVPPFPLSSFTNVPDEMQEWADEYFGRGSAARPLRPKSLIVEGDSRTGKTMWARALGPHNYLSGHLDFNSKVFSNEVEYNVIDDVAPHYLKLKHWKELIGAQKDWQSNCKYGKPVQITVGIPAIVLCNPGEGVSYKDFLDKEENAALKSWTLHNAKFIFIDSPLYQTTTQGGEEKRNSP |
| NCBI Accession | YP_459917.1 |
|---|---|
| Location | 498-1268 |
| Gene Name | NSP |
| Protein Name | nuclear shuttle protein |
| Coding Region | ATGTATCAAGCCAAGTATAGACGTGGGTTATCTACAAATTATCGTCGTAATTACACGCGAAATGCCGTTCTCAAGCGTTCTTATGGCGTAAAGTTTAGCAATGTGAGACGACGTCCAAGTAATCATAACAGGGCCCATGAAGATGTTAAGATGGCAGCCCAGCGTATACATGAGAACCAGTTTGGGCCTGAGTTTGTTATGGGCCATAATTCAGCCATTTCAACGTTTATCACCTTTCCTAGCCTCGGTAAGATCGAACCTAATCGAACCAGGTCCTATGTCAAGCTAAAACGACTCCGATTTAAGGGCACTGTGAAGATTGAACGTGTTCAAAACGATGTCATCATGGATGGTTCAGCCCCGAAGATTGAAGGAGTCTTTTCACTAGTGGTCGTGGTGGATCGTAAACCCCACTTGGGATCATCTGGGTGTTTGTATACGTTTGACGAGTTATTCGGTGCCAGGATCAACAGTCATGGCAATCTAGCCATAACATCCTCACTGAAAGACCGGTTTTATATTCGACACGTGTTCAAACGTGTATTGTCTGTGGAGAAGGATACGTTAATGGTTGATCTTGAAGGGACTACATCTCTCTCTAACAGGCGTTTTAATTGTTGGTCTACGTTTAAGGATATAGACCGTGATTCATGTAACGGTGTTTATGCAAACATAAGCAAGAACGCCCTCTTAGTTTATTACTGCTGGATGTCGGACTCGTCGTCCAAGGCATCGACATTTGTATCGTATGATCTTGATTATATTGGTTAA |
| Protein Sequence | MYQAKYRRGLSTNYRRNYTRNAVLKRSYGVKFSNVRRRPSNHNRAHEDVKMAAQRIHENQFGPEFVMGHNSAISTFITFPSLGKIEPNRTRSYVKLKRLRFKGTVKIERVQNDVIMDGSAPKIEGVFSLVVVVDRKPHLGSSGCLYTFDELFGARINSHGNLAITSSLKDRFYIRHVFKRVLSVEKDTLMVDLEGTTSLSNRRFNCWSTFKDIDRDSCNGVYANISKNALLVYYCWMSDSSSKASTFVSYDLDYIG |
| NCBI Accession | YP_459918.1 |
|---|---|
| Location | 1340-2221 |
| Gene Name | MP |
| Protein Name | movement protein |
| Coding Region | ATGGATTCTCAGTTAGTTAATCCACCAAATGCCTTTAATTATATAGAATCTCAGCGTGATGAATATAAGCTTTCGCATGATCTAACTGAGATCGTTCTGCAGTTTCCTTCTGCAGCGGCTCATATAAGCGCCAGACTCAGCCGTAGCTGTATGAAGATAGACCACTGCGTCATAGAATACCGGCAACAGGTACCCATAAACGCCGCAGGTTCCGTTATCGTGGAGATTCACGACAAGAGAATGACGGACAATGAATCGTTACAGGCGTCATGGACATTCCCGATCAGATGCAACATAGATCTCCACTATTTCTCCTGTTCATTCTTCTCCCTCAAAGACCCAATACCGTGGAAATTGTACTACAGAGTGAGCGACACGAATGTTCACCAGAGCATCCACTTCGCGAAATTCAAGGGGAAGTTGAAACTGTCGACGGCTAAACATTCGGTGGATATTGCTTTCCGAGCACCGACGGTCAAGATCTTATCTAAACAGTTCACGGATAGAGATGTAGATTTCAGCCACGTGGGCTACGGGAAATGGGAAAGGAAATTGATCAGATCCGCTTCAACTGTCAAGTATGGGCTACCAAGCCCAATAACAATTGATCCAGGCGAGACATGGGCTTCGCGCAGTACGCTGGGGATCGGTCAATCGAGTACGGAATCAGAGGTGGAGAACGCAGCACACCCATATCGAGGACTACACAGATTGGGAACCACCATGTTAGACCCAGGCGACTCGGCCTCAATAGTTGCTGCGAGAAGGGCCCAATCGCATATAACCATGTCAGAGGCCCAAATAAACGACCTAGTGAGGAATGCGGTCCAAGAGTGTATAAAAACAAATTGTATTCCCCCAGAGSCCAAATCATTGAGTTAA |
| Protein Sequence | MDSQLVNPPNAFNYIESQRDEYKLSHDLTEIVLQFPSAAAHISARLSRSCMKIDHCVIEYRQQVPINAAGSVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYFSCSFFSLKDPIPWKLYYRVSDTNVHQSIHFAKFKGKLKLSTAKHSVDIAFRAPTVKILSKQFTDRDVDFSHVGYGKWERKLIRSASTVKYGLPSPITIDPGETWASRSTLGIGQSSTESEVENAAHPYRGLHRLGTTMLDPGDSASIVAARRAQSHITMSEAQINDLVRNAVQECIKTNCIPPEXKSLS |
| 1 |
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|---|---|
| 2 |
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Qiao N, et al. Genes Genomics. 2023 Jan;45(1):23-37. doi: 10.1007/s13258-022-01325-x. Epub 2022 Nov 12. PMID: 36371493 |
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| 6 |
Occurrence of Impatiens necrotic spot virus and Tomato spotted wilt virus on Potatoes in Iran. Pourrahim R, et al. Plant Dis. 2012 May;96(5):771. doi: 10.1094/PDIS-01-12-0051-PDN. PMID: 30727561 |
| 7 |
First Report of Tomato yellow ring virus (Tospovirus, Bunyaviridae) Infecting Tomato in Kenya. Birithia R, et al. Plant Dis. 2012 Sep;96(9):1384. doi: 10.1094/PDIS-05-12-0462-PDN. PMID: 30727189 |
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Sabra A, et al. Plants (Basel). 2022 Nov 18;11(22):3157. doi: 10.3390/plants11223157. PMID: 36432886 |
| 10 |
First Report of a Natural Occurrence of Tomato yellow fruit ring virus on Pepper in Iran. Golnaraghi AR, et al. Plant Dis. 2013 Sep;97(9):1259. doi: 10.1094/PDIS-12-12-1199-PDN. PMID: 30722433 |