Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000904935.1 |
Isolate | Costa Rica |
Release date | 2015/2/22 |
Submitter | Maliano,M.R., Melgarejo,T., Rojas,M., Barboza,N., Gilbertson,R.L. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_007250558.1 |
---|---|
Location | 169-915 |
Gene Name | AV1 |
Protein Name | capsid protein |
Coding Region | ATGCCTAAGCGGGATGCCCCTTGGCGTTTAAGCGCGGGGACCACTAAGGTCTCCCGCTCTAGTAATTATTCTCCAAATGGAGGTATGGGCCCTAAGGCCACTTCTTGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATCTATCGCACGTTGAGAGGCCCTGATGTGCCCAAAGGCTGCGAAGGTCCCTGTAAGGTCCAGTCCTACGAGCAGCGTCATGACGTCTCTCATGTTGGTAAAGTCATGTGCATCTCAGACATCACACGAGGTGGTGGTATTACCCACCGTGTAGGTAAACGTTTTTGCGTTAAGTCTGTTTACATTTTAGGGAAGGTATGGATGGACGATAACATCAAGTTGAAGAACCACACGAATAGTGTTATGTTCTGGCTGGTTAGAGACCGGAGACCCTATGGCACCCCTATGGATTTTGGTCAAGTGTTCAACATGTACGACAATGAGCCCAGTACAGCCACTGTTAAGAACGATCTTCGTGATCGTTTTCAAGTGCTACACAAGTTCTACGCCAAGGTCACGGGTGGACAGTATGCCAGCAATGAGCAGGCGTTGGTCAAGCGTTTCTGGAAGGTTAACAACCATGTCGTCTATAACCATCAAGAAGCAGGGAAATACGAGAATCACACTGAGAATGCTTTGTTATTGTACATGGCATGTACTCATGCCTCTAATCCTGTGTATGCAACATTAAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAA |
Protein Sequence | MPKRDAPWRLSAGTTKVSRSSNYSPNGGMGPKATSWVNRPMYRKPRIYRTLRGPDVPKGCEGPCKVQSYEQRHDVSHVGKVMCISDITRGGGITHRVGKRFCVKSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATVKNDLRDRFQVLHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
NCBI Accession | YP_007250559.1 |
---|---|
Location | 912-1310 |
Gene Name | AC3 |
Protein Name | replication enhancer protein |
Coding Region | ATGGATTCACGCACAGGGGAGAGCATCACTGCGCATCAGGCAGAGAATTCCGTTTTTATTTGGGATGTTCCAAATCCCCTCTATTTCAGGATGTGTCGAGTAGAAGAGCCACTTTACACATCGACCAGAATCTACCACATTCAAATCAGGTGCAACCACAACCTCAGGAGGGCACTGAATCTTCACAAAGCTTTTCTGAACTTCCAAGTCTGGACGACATCAATTCGAGCTTCTGGGAAGACTTACTTAAATAGATTTAAGTATTTAGTTTTACTGTATTTAGATAGAATAGGTGTTATTGGGATTAACAATGTAATTAGAGCTGTTCGTTTCGCAACAGACAAGGCATATGTAAATCATGTACTTGAGAATCATGAAATAAAAGTAAATCTTTATTAA |
Protein Sequence | MDSRTGESITAHQAENSVFIWDVPNPLYFRMCRVEEPLYTSTRIYHIQIRCNHNLRRALNLHKAFLNFQVWTTSIRASGKTYLNRFKYLVLLYLDRIGVIGINNVIRAVRFATDKAYVNHVLENHEIKVNLY |
NCBI Accession | YP_007250560.1 |
---|---|
Location | 1057-1446 |
Gene Name | AC2 |
Protein Name | transcriptional activator protein |
Coding Region | ATGCTAAATTCATCTTCCTCAACTCCCCCCTCTATCAAACCTCATCACAGGAACGCTAAGAGAAGAGCAATACGTAGGAAACGTATAGACCTAAACTGTGGCTGTTCAATATTCCTACACATCAACTGCTCCAACAATGGATTCACGCACAGGGGAGAGCATCACTGCGCATCAGGCAGAGAATTCCGTTTTTATTTGGGATGTTCCAAATCCCCTCTATTTCAGGATGTGTCGAGTAGAAGAGCCACTTTACACATCGACCAGAATCTACCACATTCAAATCAGGTGCAACCACAACCTCAGGAGGGCACTGAATCTTCACAAAGCTTTTCTGAACTTCCAAGTCTGGACGACATCAATTCGAGCTTCTGGGAAGACTTACTTAAATAG |
Protein Sequence | MLNSSSSTPPSIKPHHRNAKRRAIRRKRIDLNCGCSIFLHINCSNNGFTHRGEHHCASGREFRFYLGCSKSPLFQDVSSRRATLHIDQNLPHSNQVQPQPQEGTESSQSFSELPSLDDINSSFWEDLLK |
NCBI Accession | YP_007250561.1 |
---|---|
Location | 1388-2443 |
Gene Name | AC1 |
Protein Name | replication-associated protein |
Coding Region | ATGCCCCCGCCGAAAAAATTTAGACTATCGGCTAAAAATATATTCTTAACATATCCTCGCTGTTCTTTAACAAAAGAAGAGGCTCTCTTTCAACTCCAGAATATCTCTCTACCTTCGAATAAATTATTCATTCGTGTCGCAAGGGAACTCCACGAAGATGGGGAACCTCATCTCCATGTGCTTATACAACTCGAGGGTAAAGTCCAAATATACAACCAGAAACTCTTCGACCTCAGTTCCACAAGCAGATCAGCATATTTCCATCCGAACATTCAGGGAGCTAAGAGCAGCTCAGACGTTAAATCATACATGGAGAAAGACGGAGAATTCCTTGATTTTGGAGTTTTCCAGATCGATGGAAGATCAAGTAGAGGAGGTATACAGACAACCAATGATTCATATGCAAAAGCGTTAAACGCTGGGTCTGCTGAATCTGCACTACAAATTTTAAAAGAAGAACAACCTGCTCATTATTTTCTTCATTATCATAATTTGGTCAATAATGCAAATAGGATCTTTCAAAAGGCTCCAGAACCATGGGTTCCTCCGTTTCAACTCTCATCATTCAACGCTGTTCCTGACGAGATGCAGGAATGGGCTGATGATTATTTTGGAAGAGGTGCCGCTGCGCGGCCGGAAAGACCTATTAGTATCATCGTCGAGGGTGATTCAAGAACAGGGAAGACAATGTGGGCTCGTTCTTTAGGCCCACATAATTACTTGAGTGGTCATTTAGATTTCAATTCTAGGGTTTACTCGAACGAAGTGGAATATAACGTCATCGATGACGTCGCACCGCACTACTTAAAGTTAAAGCACTGGAAAGAGTTGATTGGGGCCCAGAAAGATTGGCAGTCCAACTGTAAGTACGGCAAGCCAGTTCAAATTAAAGGGGGCATACCATCAATCGTGCTGTGCAATCCAGGAGACGGGGGGAGCTATAAAGATTTCCTCGACAAAGAGGAAAATGCGTCACTAAAACAGTGGACTCTCAAAAATGCTAAATTCATCTTCCTCAACTCCCCCCTCTATCAAACCTCATCACAGGAACGCTAA |
Protein Sequence | MPPPKKFRLSAKNIFLTYPRCSLTKEEALFQLQNISLPSNKLFIRVARELHEDGEPHLHVLIQLEGKVQIYNQKLFDLSSTSRSAYFHPNIQGAKSSSDVKSYMEKDGEFLDFGVFQIDGRSSRGGIQTTNDSYAKALNAGSAESALQILKEEQPAHYFLHYHNLVNNANRIFQKAPEPWVPPFQLSSFNAVPDEMQEWADDYFGRGAAARPERPISIIVEGDSRTGKTMWARSLGPHNYLSGHLDFNSRVYSNEVEYNVIDDVAPHYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGDGGSYKDFLDKEENASLKQWTLKNAKFIFLNSPLYQTSSQER |
NCBI Accession | YP_007250562.1 |
---|---|
Location | 2029-2286 |
Gene Name | AC4 |
Protein Name | hypothetical protein |
Coding Region | ATGGGGAACCTCATCTCCATGTGCTTATACAACTCGAGGGTAAAGTCCAAATATACAACCAGAAACTCTTCGACCTCAGTTCCACAAGCAGATCAGCATATTTCCATCCGAACATTCAGGGAGCTAAGAGCAGCTCAGACGTTAAATCATACATGGAGAAAGACGGAGAATTCCTTGATTTTGGAGTTTTCCAGATCGATGGAAGATCAAGTAGAGGAGGTATACAGACAACCAATGATTCATATGCAAAAGCGTTAA |
Protein Sequence | MGNLISMCLYNSRVKSKYTTRNSSTSVPQADQHISIRTFRELRAAQTLNHTWRKTENSLILEFSRSMEDQVEEVYRQPMIHMQKR |
NCBI Accession | YP_007250563.1 |
---|---|
Location | 457-1227 |
Gene Name | BV1 |
Protein Name | nuclear shuttle protein |
Coding Region | ATGTATCATTCTAGATACAGGCGCACCTGGTTATCTACACAACGTCGAGCATATAATCGACAACCACCGTTTAAGCGTCTATATACTTCGAGACGTAATGAACTTAAACGTCGTCCCATTAGCGATGTTATTGCTTATGACGATAAGAAGATGTCTGCTCAGCGTATACATGAGGATCAATTTGGACCAGAATTCGTTATGTTGCATAATACAGCTTTTTCAACTTATGTTACTTATCCCAGCATAGTGAAGAATGTACCTAACAGAGTTAAGTCATATATTAAGATAAAACGGTTACGTTTTAAGGGGACTTTGAAGATAGAACGTGTACATGCAGATGTTAACATGGACTGTCCAGTTTCTAAGATAGAAGGAGTGTTCTCTATGGTTATTGTGGTTGATCGTAAACCACATTTGAACGCAACAGGATGTCTACTGACGTTTGACGAGTTATTTGGGGCTAGGATTCATAGTCATGGTAATCTAGCTATAACTCCAGCCTTGAAAGATCGTTTTTATATTCGTCATGTATTGAAACGAGTATTATCGGTTGAGAAAGATAGCTTGATGGTGGACCTTGAAGGAACGACAACGTTTTCTAGCAAACGATTTAGTTGTTGGTCTTCTTTTAACGACCTTGAGCGAGATTCATGTAATGGTGTTTATGCTAATATTAGCAAGAACGCTATCTTGGTGTATTATTGCTGGATGTCAGACGTAATGTCTAAGGCATCAACATTTGTATCATTCGATCTCGACTATGTTGGCTAA |
Protein Sequence | MYHSRYRRTWLSTQRRAYNRQPPFKRLYTSRRNELKRRPISDVIAYDDKKMSAQRIHEDQFGPEFVMLHNTAFSTYVTYPSIVKNVPNRVKSYIKIKRLRFKGTLKIERVHADVNMDCPVSKIEGVFSMVIVVDRKPHLNATGCLLTFDELFGARIHSHGNLAITPALKDRFYIRHVLKRVLSVEKDSLMVDLEGTTTFSSKRFSCWSSFNDLERDSCNGVYANISKNAILVYYCWMSDVMSKASTFVSFDLDYVG |
NCBI Accession | YP_007250564.1 |
---|---|
Location | 1315-2196 |
Gene Name | BC1 |
Protein Name | movement protein |
Coding Region | ATGGATTCTCAGCTAGTCATTCCTCCTAATGCCTTTAATTACATAGACTCTCATCGTGAAGAGTATCAGCTTTCTCATGACCTAACTGAAATTGTCTTGCAGTTTCCGTCGACGGCGGCTCAGCTAAGTGCTCGATTGAGTCGCAGCTGTATGAAAATAGACCACTGCGTCATTGAATACAGGCAACAAGTGCCTATTAACGCATCTGGAACGGTGATAGTGGAGATCCATGACAAAAGGATGCAGGACAATGAGTCATTACAAGCGTCGTGGACATTTCCGATCAGATGTAACATAGATCTACATTATTTTTCATCGTCGTTCTTCTCGTTAAAAGATCCTATACCTTGGAAGTTATATTACAAGGTCAGTGACTCGAATGTACACCAAAGGACGCACTTCGCCAAGTTCAAAGGGAAACTCAAACTGTCTACTGCGAAAAATTCAGTGGATATACCTTTCCGAGCACCCACGGTCAGGATCTTGTCGAAACAGTTTACGGAGAAGGATATTGATTTCCATCACGTGGGTTTCGGAAAGTGGGAGAGAAGACTAGTCCGTTCCGCATCGTCACGAATAATTGGGCTACCAGGCCCAATAGAAATAAGGCCTGGGGAATCTTGGGCTAGTAGAAGTACCATAGGAACAGCCCATTCAAATGCGGAATCGGAGGTTACTGACGCACTATACCCTTACAGAGAGCTGAACAGATTAAGCACCCCTATTTTAGACCCAGGTGATTCTGCGTCAGTAATTGGGATTCAGCGAACGGAGTCCAACTTAACAATGTCTATGTCACAGTTAAATGACATTGTCAGGTCAACTGTTCAAGAGTGTATTAACACAAACTGTGTTCCTCCCGTGCCCAAATCTTTGAAATGA |
Protein Sequence | MDSQLVIPPNAFNYIDSHREEYQLSHDLTEIVLQFPSTAAQLSARLSRSCMKIDHCVIEYRQQVPINASGTVIVEIHDKRMQDNESLQASWTFPIRCNIDLHYFSSSFFSLKDPIPWKLYYKVSDSNVHQRTHFAKFKGKLKLSTAKNSVDIPFRAPTVRILSKQFTEKDIDFHHVGFGKWERRLVRSASSRIIGLPGPIEIRPGESWASRSTIGTAHSNAESEVTDALYPYRELNRLSTPILDPGDSASVIGIQRTESNLTMSMSQLNDIVRSTVQECINTNCVPPVPKSLK |
1 |
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2 |
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3 |
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4 |
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5 |
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6 |
Introduction of the Exotic Tomato yellow leaf curl virus-Israel in Tomato to Puerto Rico. Bird J, et al. Plant Dis. 2001 Sep;85(9):1028. doi: 10.1094/PDIS.2001.85.9.1028B. PMID: 30823090 |
7 |
Kon T, et al. Arch Virol. 2024 Apr 30;169(5):113. doi: 10.1007/s00705-024-06035-1. PMID: 38684570 |
8 |
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9 |
Lett JM, et al. Arch Virol. 2015 Nov;160(11):2887-90. doi: 10.1007/s00705-015-2558-0. Epub 2015 Aug 9. PMID: 26255054 |
10 |
First Report of Tomato yellow ring virus (Tospovirus, Bunyaviridae) Infecting Tomato in Kenya. Birithia R, et al. Plant Dis. 2012 Sep;96(9):1384. doi: 10.1094/PDIS-05-12-0462-PDN. PMID: 30727189 |