Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000904935.1 |
Isolate | Costa Rica |
Release date | 2015/2/22 |
Submitter | Maliano,M.R., Melgarejo,T., Rojas,M., Barboza,N., Gilbertson,R.L. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_007250558.1 |
---|---|
Location | 169-915 |
Gene Name | AV1 |
Protein Name | capsid protein |
Coding Region | ATGCCTAAGCGGGATGCCCCTTGGCGTTTAAGCGCGGGGACCACTAAGGTCTCCCGCTCTAGTAATTATTCTCCAAATGGAGGTATGGGCCCTAAGGCCACTTCTTGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATCTATCGCACGTTGAGAGGCCCTGATGTGCCCAAAGGCTGCGAAGGTCCCTGTAAGGTCCAGTCCTACGAGCAGCGTCATGACGTCTCTCATGTTGGTAAAGTCATGTGCATCTCAGACATCACACGAGGTGGTGGTATTACCCACCGTGTAGGTAAACGTTTTTGCGTTAAGTCTGTTTACATTTTAGGGAAGGTATGGATGGACGATAACATCAAGTTGAAGAACCACACGAATAGTGTTATGTTCTGGCTGGTTAGAGACCGGAGACCCTATGGCACCCCTATGGATTTTGGTCAAGTGTTCAACATGTACGACAATGAGCCCAGTACAGCCACTGTTAAGAACGATCTTCGTGATCGTTTTCAAGTGCTACACAAGTTCTACGCCAAGGTCACGGGTGGACAGTATGCCAGCAATGAGCAGGCGTTGGTCAAGCGTTTCTGGAAGGTTAACAACCATGTCGTCTATAACCATCAAGAAGCAGGGAAATACGAGAATCACACTGAGAATGCTTTGTTATTGTACATGGCATGTACTCATGCCTCTAATCCTGTGTATGCAACATTAAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAA |
Protein Sequence | MPKRDAPWRLSAGTTKVSRSSNYSPNGGMGPKATSWVNRPMYRKPRIYRTLRGPDVPKGCEGPCKVQSYEQRHDVSHVGKVMCISDITRGGGITHRVGKRFCVKSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATVKNDLRDRFQVLHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
NCBI Accession | YP_007250559.1 |
---|---|
Location | 912-1310 |
Gene Name | AC3 |
Protein Name | replication enhancer protein |
Coding Region | ATGGATTCACGCACAGGGGAGAGCATCACTGCGCATCAGGCAGAGAATTCCGTTTTTATTTGGGATGTTCCAAATCCCCTCTATTTCAGGATGTGTCGAGTAGAAGAGCCACTTTACACATCGACCAGAATCTACCACATTCAAATCAGGTGCAACCACAACCTCAGGAGGGCACTGAATCTTCACAAAGCTTTTCTGAACTTCCAAGTCTGGACGACATCAATTCGAGCTTCTGGGAAGACTTACTTAAATAGATTTAAGTATTTAGTTTTACTGTATTTAGATAGAATAGGTGTTATTGGGATTAACAATGTAATTAGAGCTGTTCGTTTCGCAACAGACAAGGCATATGTAAATCATGTACTTGAGAATCATGAAATAAAAGTAAATCTTTATTAA |
Protein Sequence | MDSRTGESITAHQAENSVFIWDVPNPLYFRMCRVEEPLYTSTRIYHIQIRCNHNLRRALNLHKAFLNFQVWTTSIRASGKTYLNRFKYLVLLYLDRIGVIGINNVIRAVRFATDKAYVNHVLENHEIKVNLY |
NCBI Accession | YP_007250560.1 |
---|---|
Location | 1057-1446 |
Gene Name | AC2 |
Protein Name | transcriptional activator protein |
Coding Region | ATGCTAAATTCATCTTCCTCAACTCCCCCCTCTATCAAACCTCATCACAGGAACGCTAAGAGAAGAGCAATACGTAGGAAACGTATAGACCTAAACTGTGGCTGTTCAATATTCCTACACATCAACTGCTCCAACAATGGATTCACGCACAGGGGAGAGCATCACTGCGCATCAGGCAGAGAATTCCGTTTTTATTTGGGATGTTCCAAATCCCCTCTATTTCAGGATGTGTCGAGTAGAAGAGCCACTTTACACATCGACCAGAATCTACCACATTCAAATCAGGTGCAACCACAACCTCAGGAGGGCACTGAATCTTCACAAAGCTTTTCTGAACTTCCAAGTCTGGACGACATCAATTCGAGCTTCTGGGAAGACTTACTTAAATAG |
Protein Sequence | MLNSSSSTPPSIKPHHRNAKRRAIRRKRIDLNCGCSIFLHINCSNNGFTHRGEHHCASGREFRFYLGCSKSPLFQDVSSRRATLHIDQNLPHSNQVQPQPQEGTESSQSFSELPSLDDINSSFWEDLLK |
NCBI Accession | YP_007250561.1 |
---|---|
Location | 1388-2443 |
Gene Name | AC1 |
Protein Name | replication-associated protein |
Coding Region | ATGCCCCCGCCGAAAAAATTTAGACTATCGGCTAAAAATATATTCTTAACATATCCTCGCTGTTCTTTAACAAAAGAAGAGGCTCTCTTTCAACTCCAGAATATCTCTCTACCTTCGAATAAATTATTCATTCGTGTCGCAAGGGAACTCCACGAAGATGGGGAACCTCATCTCCATGTGCTTATACAACTCGAGGGTAAAGTCCAAATATACAACCAGAAACTCTTCGACCTCAGTTCCACAAGCAGATCAGCATATTTCCATCCGAACATTCAGGGAGCTAAGAGCAGCTCAGACGTTAAATCATACATGGAGAAAGACGGAGAATTCCTTGATTTTGGAGTTTTCCAGATCGATGGAAGATCAAGTAGAGGAGGTATACAGACAACCAATGATTCATATGCAAAAGCGTTAAACGCTGGGTCTGCTGAATCTGCACTACAAATTTTAAAAGAAGAACAACCTGCTCATTATTTTCTTCATTATCATAATTTGGTCAATAATGCAAATAGGATCTTTCAAAAGGCTCCAGAACCATGGGTTCCTCCGTTTCAACTCTCATCATTCAACGCTGTTCCTGACGAGATGCAGGAATGGGCTGATGATTATTTTGGAAGAGGTGCCGCTGCGCGGCCGGAAAGACCTATTAGTATCATCGTCGAGGGTGATTCAAGAACAGGGAAGACAATGTGGGCTCGTTCTTTAGGCCCACATAATTACTTGAGTGGTCATTTAGATTTCAATTCTAGGGTTTACTCGAACGAAGTGGAATATAACGTCATCGATGACGTCGCACCGCACTACTTAAAGTTAAAGCACTGGAAAGAGTTGATTGGGGCCCAGAAAGATTGGCAGTCCAACTGTAAGTACGGCAAGCCAGTTCAAATTAAAGGGGGCATACCATCAATCGTGCTGTGCAATCCAGGAGACGGGGGGAGCTATAAAGATTTCCTCGACAAAGAGGAAAATGCGTCACTAAAACAGTGGACTCTCAAAAATGCTAAATTCATCTTCCTCAACTCCCCCCTCTATCAAACCTCATCACAGGAACGCTAA |
Protein Sequence | MPPPKKFRLSAKNIFLTYPRCSLTKEEALFQLQNISLPSNKLFIRVARELHEDGEPHLHVLIQLEGKVQIYNQKLFDLSSTSRSAYFHPNIQGAKSSSDVKSYMEKDGEFLDFGVFQIDGRSSRGGIQTTNDSYAKALNAGSAESALQILKEEQPAHYFLHYHNLVNNANRIFQKAPEPWVPPFQLSSFNAVPDEMQEWADDYFGRGAAARPERPISIIVEGDSRTGKTMWARSLGPHNYLSGHLDFNSRVYSNEVEYNVIDDVAPHYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGDGGSYKDFLDKEENASLKQWTLKNAKFIFLNSPLYQTSSQER |
NCBI Accession | YP_007250562.1 |
---|---|
Location | 2029-2286 |
Gene Name | AC4 |
Protein Name | hypothetical protein |
Coding Region | ATGGGGAACCTCATCTCCATGTGCTTATACAACTCGAGGGTAAAGTCCAAATATACAACCAGAAACTCTTCGACCTCAGTTCCACAAGCAGATCAGCATATTTCCATCCGAACATTCAGGGAGCTAAGAGCAGCTCAGACGTTAAATCATACATGGAGAAAGACGGAGAATTCCTTGATTTTGGAGTTTTCCAGATCGATGGAAGATCAAGTAGAGGAGGTATACAGACAACCAATGATTCATATGCAAAAGCGTTAA |
Protein Sequence | MGNLISMCLYNSRVKSKYTTRNSSTSVPQADQHISIRTFRELRAAQTLNHTWRKTENSLILEFSRSMEDQVEEVYRQPMIHMQKR |
NCBI Accession | YP_007250563.1 |
---|---|
Location | 457-1227 |
Gene Name | BV1 |
Protein Name | nuclear shuttle protein |
Coding Region | ATGTATCATTCTAGATACAGGCGCACCTGGTTATCTACACAACGTCGAGCATATAATCGACAACCACCGTTTAAGCGTCTATATACTTCGAGACGTAATGAACTTAAACGTCGTCCCATTAGCGATGTTATTGCTTATGACGATAAGAAGATGTCTGCTCAGCGTATACATGAGGATCAATTTGGACCAGAATTCGTTATGTTGCATAATACAGCTTTTTCAACTTATGTTACTTATCCCAGCATAGTGAAGAATGTACCTAACAGAGTTAAGTCATATATTAAGATAAAACGGTTACGTTTTAAGGGGACTTTGAAGATAGAACGTGTACATGCAGATGTTAACATGGACTGTCCAGTTTCTAAGATAGAAGGAGTGTTCTCTATGGTTATTGTGGTTGATCGTAAACCACATTTGAACGCAACAGGATGTCTACTGACGTTTGACGAGTTATTTGGGGCTAGGATTCATAGTCATGGTAATCTAGCTATAACTCCAGCCTTGAAAGATCGTTTTTATATTCGTCATGTATTGAAACGAGTATTATCGGTTGAGAAAGATAGCTTGATGGTGGACCTTGAAGGAACGACAACGTTTTCTAGCAAACGATTTAGTTGTTGGTCTTCTTTTAACGACCTTGAGCGAGATTCATGTAATGGTGTTTATGCTAATATTAGCAAGAACGCTATCTTGGTGTATTATTGCTGGATGTCAGACGTAATGTCTAAGGCATCAACATTTGTATCATTCGATCTCGACTATGTTGGCTAA |
Protein Sequence | MYHSRYRRTWLSTQRRAYNRQPPFKRLYTSRRNELKRRPISDVIAYDDKKMSAQRIHEDQFGPEFVMLHNTAFSTYVTYPSIVKNVPNRVKSYIKIKRLRFKGTLKIERVHADVNMDCPVSKIEGVFSMVIVVDRKPHLNATGCLLTFDELFGARIHSHGNLAITPALKDRFYIRHVLKRVLSVEKDSLMVDLEGTTTFSSKRFSCWSSFNDLERDSCNGVYANISKNAILVYYCWMSDVMSKASTFVSFDLDYVG |
NCBI Accession | YP_007250564.1 |
---|---|
Location | 1315-2196 |
Gene Name | BC1 |
Protein Name | movement protein |
Coding Region | ATGGATTCTCAGCTAGTCATTCCTCCTAATGCCTTTAATTACATAGACTCTCATCGTGAAGAGTATCAGCTTTCTCATGACCTAACTGAAATTGTCTTGCAGTTTCCGTCGACGGCGGCTCAGCTAAGTGCTCGATTGAGTCGCAGCTGTATGAAAATAGACCACTGCGTCATTGAATACAGGCAACAAGTGCCTATTAACGCATCTGGAACGGTGATAGTGGAGATCCATGACAAAAGGATGCAGGACAATGAGTCATTACAAGCGTCGTGGACATTTCCGATCAGATGTAACATAGATCTACATTATTTTTCATCGTCGTTCTTCTCGTTAAAAGATCCTATACCTTGGAAGTTATATTACAAGGTCAGTGACTCGAATGTACACCAAAGGACGCACTTCGCCAAGTTCAAAGGGAAACTCAAACTGTCTACTGCGAAAAATTCAGTGGATATACCTTTCCGAGCACCCACGGTCAGGATCTTGTCGAAACAGTTTACGGAGAAGGATATTGATTTCCATCACGTGGGTTTCGGAAAGTGGGAGAGAAGACTAGTCCGTTCCGCATCGTCACGAATAATTGGGCTACCAGGCCCAATAGAAATAAGGCCTGGGGAATCTTGGGCTAGTAGAAGTACCATAGGAACAGCCCATTCAAATGCGGAATCGGAGGTTACTGACGCACTATACCCTTACAGAGAGCTGAACAGATTAAGCACCCCTATTTTAGACCCAGGTGATTCTGCGTCAGTAATTGGGATTCAGCGAACGGAGTCCAACTTAACAATGTCTATGTCACAGTTAAATGACATTGTCAGGTCAACTGTTCAAGAGTGTATTAACACAAACTGTGTTCCTCCCGTGCCCAAATCTTTGAAATGA |
Protein Sequence | MDSQLVIPPNAFNYIDSHREEYQLSHDLTEIVLQFPSTAAQLSARLSRSCMKIDHCVIEYRQQVPINASGTVIVEIHDKRMQDNESLQASWTFPIRCNIDLHYFSSSFFSLKDPIPWKLYYKVSDSNVHQRTHFAKFKGKLKLSTAKNSVDIPFRAPTVRILSKQFTEKDIDFHHVGFGKWERRLVRSASSRIIGLPGPIEIRPGESWASRSTIGTAHSNAESEVTDALYPYRELNRLSTPILDPGDSASVIGIQRTESNLTMSMSQLNDIVRSTVQECINTNCVPPVPKSLK |
1 |
First report of tomato yellow mottle-associated virus infecting Solanum nigrum in China. Li Z, et al. Plant Dis. 2022 Jul 8. doi: 10.1094/PDIS-05-22-1096-PDN. Online ahead of print. PMID: 35801896 |
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2 |
Li C, et al. Plant Dis. 2022 Oct 24. doi: 10.1094/PDIS-09-22-2050-PDN. Online ahead of print. PMID: 36281017 |
3 |
Peng M, et al. Microbiol Resour Announc. 2022 Jun 16;11(6):e0029722. doi: 10.1128/mra.00297-22. Epub 2022 May 23. PMID: 35604141 |
4 |
First Report of Tomato Yellow Leaf Curl Virus Infecting Pepper and Tomato in Oklahoma. Paslay C, et al. Plant Dis. 2022 Aug 12. doi: 10.1094/PDIS-04-22-0927-PDN. Online ahead of print. PMID: 35961018 |
5 |
Zhang S, et al. Mol Plant Pathol. 2022 Sep;23(9):1262-1277. doi: 10.1111/mpp.13229. Epub 2022 May 22. PMID: 35598295 |
6 |
Tomato mottle wrinkle virus, a recombinant begomovirus infecting tomato in Argentina. Vaghi Medina CG, et al. Arch Virol. 2015 Feb;160(2):581-5. doi: 10.1007/s00705-014-2216-y. Epub 2014 Sep 25. PMID: 25252814 |
7 |
First Report of Tomato yellow leaf curl virus in Tomato in Costa Rica. Barboza N, et al. Plant Dis. 2014 May;98(5):699. doi: 10.1094/PDIS-08-13-0881-PDN. PMID: 30708517 |
8 |
Lett JM, et al. Arch Virol. 2015 Nov;160(11):2887-90. doi: 10.1007/s00705-015-2558-0. Epub 2015 Aug 9. PMID: 26255054 |
9 |
Gill U, et al. Theor Appl Genet. 2019 May;132(5):1543-1554. doi: 10.1007/s00122-019-03298-0. Epub 2019 Feb 13. PMID: 30758531 |
10 |
Nava A, et al. Arch Virol. 2013 Feb;158(2):399-406. doi: 10.1007/s00705-012-1501-x. Epub 2012 Oct 14. PMID: 23064695 |