| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_000904935.1 |
| Isolate | Costa Rica |
| Release date | 2015/2/22 |
| Submitter | Maliano,M.R., Melgarejo,T., Rojas,M., Barboza,N., Gilbertson,R.L. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
| NCBI Accession | YP_007250558.1 |
|---|---|
| Location | 169-915 |
| Gene Name | AV1 |
| Protein Name | capsid protein |
| Coding Region | ATGCCTAAGCGGGATGCCCCTTGGCGTTTAAGCGCGGGGACCACTAAGGTCTCCCGCTCTAGTAATTATTCTCCAAATGGAGGTATGGGCCCTAAGGCCACTTCTTGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATCTATCGCACGTTGAGAGGCCCTGATGTGCCCAAAGGCTGCGAAGGTCCCTGTAAGGTCCAGTCCTACGAGCAGCGTCATGACGTCTCTCATGTTGGTAAAGTCATGTGCATCTCAGACATCACACGAGGTGGTGGTATTACCCACCGTGTAGGTAAACGTTTTTGCGTTAAGTCTGTTTACATTTTAGGGAAGGTATGGATGGACGATAACATCAAGTTGAAGAACCACACGAATAGTGTTATGTTCTGGCTGGTTAGAGACCGGAGACCCTATGGCACCCCTATGGATTTTGGTCAAGTGTTCAACATGTACGACAATGAGCCCAGTACAGCCACTGTTAAGAACGATCTTCGTGATCGTTTTCAAGTGCTACACAAGTTCTACGCCAAGGTCACGGGTGGACAGTATGCCAGCAATGAGCAGGCGTTGGTCAAGCGTTTCTGGAAGGTTAACAACCATGTCGTCTATAACCATCAAGAAGCAGGGAAATACGAGAATCACACTGAGAATGCTTTGTTATTGTACATGGCATGTACTCATGCCTCTAATCCTGTGTATGCAACATTAAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAA |
| Protein Sequence | MPKRDAPWRLSAGTTKVSRSSNYSPNGGMGPKATSWVNRPMYRKPRIYRTLRGPDVPKGCEGPCKVQSYEQRHDVSHVGKVMCISDITRGGGITHRVGKRFCVKSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATVKNDLRDRFQVLHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
| NCBI Accession | YP_007250559.1 |
|---|---|
| Location | 912-1310 |
| Gene Name | AC3 |
| Protein Name | replication enhancer protein |
| Coding Region | ATGGATTCACGCACAGGGGAGAGCATCACTGCGCATCAGGCAGAGAATTCCGTTTTTATTTGGGATGTTCCAAATCCCCTCTATTTCAGGATGTGTCGAGTAGAAGAGCCACTTTACACATCGACCAGAATCTACCACATTCAAATCAGGTGCAACCACAACCTCAGGAGGGCACTGAATCTTCACAAAGCTTTTCTGAACTTCCAAGTCTGGACGACATCAATTCGAGCTTCTGGGAAGACTTACTTAAATAGATTTAAGTATTTAGTTTTACTGTATTTAGATAGAATAGGTGTTATTGGGATTAACAATGTAATTAGAGCTGTTCGTTTCGCAACAGACAAGGCATATGTAAATCATGTACTTGAGAATCATGAAATAAAAGTAAATCTTTATTAA |
| Protein Sequence | MDSRTGESITAHQAENSVFIWDVPNPLYFRMCRVEEPLYTSTRIYHIQIRCNHNLRRALNLHKAFLNFQVWTTSIRASGKTYLNRFKYLVLLYLDRIGVIGINNVIRAVRFATDKAYVNHVLENHEIKVNLY |
| NCBI Accession | YP_007250560.1 |
|---|---|
| Location | 1057-1446 |
| Gene Name | AC2 |
| Protein Name | transcriptional activator protein |
| Coding Region | ATGCTAAATTCATCTTCCTCAACTCCCCCCTCTATCAAACCTCATCACAGGAACGCTAAGAGAAGAGCAATACGTAGGAAACGTATAGACCTAAACTGTGGCTGTTCAATATTCCTACACATCAACTGCTCCAACAATGGATTCACGCACAGGGGAGAGCATCACTGCGCATCAGGCAGAGAATTCCGTTTTTATTTGGGATGTTCCAAATCCCCTCTATTTCAGGATGTGTCGAGTAGAAGAGCCACTTTACACATCGACCAGAATCTACCACATTCAAATCAGGTGCAACCACAACCTCAGGAGGGCACTGAATCTTCACAAAGCTTTTCTGAACTTCCAAGTCTGGACGACATCAATTCGAGCTTCTGGGAAGACTTACTTAAATAG |
| Protein Sequence | MLNSSSSTPPSIKPHHRNAKRRAIRRKRIDLNCGCSIFLHINCSNNGFTHRGEHHCASGREFRFYLGCSKSPLFQDVSSRRATLHIDQNLPHSNQVQPQPQEGTESSQSFSELPSLDDINSSFWEDLLK |
| NCBI Accession | YP_007250561.1 |
|---|---|
| Location | 1388-2443 |
| Gene Name | AC1 |
| Protein Name | replication-associated protein |
| Coding Region | ATGCCCCCGCCGAAAAAATTTAGACTATCGGCTAAAAATATATTCTTAACATATCCTCGCTGTTCTTTAACAAAAGAAGAGGCTCTCTTTCAACTCCAGAATATCTCTCTACCTTCGAATAAATTATTCATTCGTGTCGCAAGGGAACTCCACGAAGATGGGGAACCTCATCTCCATGTGCTTATACAACTCGAGGGTAAAGTCCAAATATACAACCAGAAACTCTTCGACCTCAGTTCCACAAGCAGATCAGCATATTTCCATCCGAACATTCAGGGAGCTAAGAGCAGCTCAGACGTTAAATCATACATGGAGAAAGACGGAGAATTCCTTGATTTTGGAGTTTTCCAGATCGATGGAAGATCAAGTAGAGGAGGTATACAGACAACCAATGATTCATATGCAAAAGCGTTAAACGCTGGGTCTGCTGAATCTGCACTACAAATTTTAAAAGAAGAACAACCTGCTCATTATTTTCTTCATTATCATAATTTGGTCAATAATGCAAATAGGATCTTTCAAAAGGCTCCAGAACCATGGGTTCCTCCGTTTCAACTCTCATCATTCAACGCTGTTCCTGACGAGATGCAGGAATGGGCTGATGATTATTTTGGAAGAGGTGCCGCTGCGCGGCCGGAAAGACCTATTAGTATCATCGTCGAGGGTGATTCAAGAACAGGGAAGACAATGTGGGCTCGTTCTTTAGGCCCACATAATTACTTGAGTGGTCATTTAGATTTCAATTCTAGGGTTTACTCGAACGAAGTGGAATATAACGTCATCGATGACGTCGCACCGCACTACTTAAAGTTAAAGCACTGGAAAGAGTTGATTGGGGCCCAGAAAGATTGGCAGTCCAACTGTAAGTACGGCAAGCCAGTTCAAATTAAAGGGGGCATACCATCAATCGTGCTGTGCAATCCAGGAGACGGGGGGAGCTATAAAGATTTCCTCGACAAAGAGGAAAATGCGTCACTAAAACAGTGGACTCTCAAAAATGCTAAATTCATCTTCCTCAACTCCCCCCTCTATCAAACCTCATCACAGGAACGCTAA |
| Protein Sequence | MPPPKKFRLSAKNIFLTYPRCSLTKEEALFQLQNISLPSNKLFIRVARELHEDGEPHLHVLIQLEGKVQIYNQKLFDLSSTSRSAYFHPNIQGAKSSSDVKSYMEKDGEFLDFGVFQIDGRSSRGGIQTTNDSYAKALNAGSAESALQILKEEQPAHYFLHYHNLVNNANRIFQKAPEPWVPPFQLSSFNAVPDEMQEWADDYFGRGAAARPERPISIIVEGDSRTGKTMWARSLGPHNYLSGHLDFNSRVYSNEVEYNVIDDVAPHYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGDGGSYKDFLDKEENASLKQWTLKNAKFIFLNSPLYQTSSQER |
| NCBI Accession | YP_007250562.1 |
|---|---|
| Location | 2029-2286 |
| Gene Name | AC4 |
| Protein Name | hypothetical protein |
| Coding Region | ATGGGGAACCTCATCTCCATGTGCTTATACAACTCGAGGGTAAAGTCCAAATATACAACCAGAAACTCTTCGACCTCAGTTCCACAAGCAGATCAGCATATTTCCATCCGAACATTCAGGGAGCTAAGAGCAGCTCAGACGTTAAATCATACATGGAGAAAGACGGAGAATTCCTTGATTTTGGAGTTTTCCAGATCGATGGAAGATCAAGTAGAGGAGGTATACAGACAACCAATGATTCATATGCAAAAGCGTTAA |
| Protein Sequence | MGNLISMCLYNSRVKSKYTTRNSSTSVPQADQHISIRTFRELRAAQTLNHTWRKTENSLILEFSRSMEDQVEEVYRQPMIHMQKR |
| NCBI Accession | YP_007250563.1 |
|---|---|
| Location | 457-1227 |
| Gene Name | BV1 |
| Protein Name | nuclear shuttle protein |
| Coding Region | ATGTATCATTCTAGATACAGGCGCACCTGGTTATCTACACAACGTCGAGCATATAATCGACAACCACCGTTTAAGCGTCTATATACTTCGAGACGTAATGAACTTAAACGTCGTCCCATTAGCGATGTTATTGCTTATGACGATAAGAAGATGTCTGCTCAGCGTATACATGAGGATCAATTTGGACCAGAATTCGTTATGTTGCATAATACAGCTTTTTCAACTTATGTTACTTATCCCAGCATAGTGAAGAATGTACCTAACAGAGTTAAGTCATATATTAAGATAAAACGGTTACGTTTTAAGGGGACTTTGAAGATAGAACGTGTACATGCAGATGTTAACATGGACTGTCCAGTTTCTAAGATAGAAGGAGTGTTCTCTATGGTTATTGTGGTTGATCGTAAACCACATTTGAACGCAACAGGATGTCTACTGACGTTTGACGAGTTATTTGGGGCTAGGATTCATAGTCATGGTAATCTAGCTATAACTCCAGCCTTGAAAGATCGTTTTTATATTCGTCATGTATTGAAACGAGTATTATCGGTTGAGAAAGATAGCTTGATGGTGGACCTTGAAGGAACGACAACGTTTTCTAGCAAACGATTTAGTTGTTGGTCTTCTTTTAACGACCTTGAGCGAGATTCATGTAATGGTGTTTATGCTAATATTAGCAAGAACGCTATCTTGGTGTATTATTGCTGGATGTCAGACGTAATGTCTAAGGCATCAACATTTGTATCATTCGATCTCGACTATGTTGGCTAA |
| Protein Sequence | MYHSRYRRTWLSTQRRAYNRQPPFKRLYTSRRNELKRRPISDVIAYDDKKMSAQRIHEDQFGPEFVMLHNTAFSTYVTYPSIVKNVPNRVKSYIKIKRLRFKGTLKIERVHADVNMDCPVSKIEGVFSMVIVVDRKPHLNATGCLLTFDELFGARIHSHGNLAITPALKDRFYIRHVLKRVLSVEKDSLMVDLEGTTTFSSKRFSCWSSFNDLERDSCNGVYANISKNAILVYYCWMSDVMSKASTFVSFDLDYVG |
| NCBI Accession | YP_007250564.1 |
|---|---|
| Location | 1315-2196 |
| Gene Name | BC1 |
| Protein Name | movement protein |
| Coding Region | ATGGATTCTCAGCTAGTCATTCCTCCTAATGCCTTTAATTACATAGACTCTCATCGTGAAGAGTATCAGCTTTCTCATGACCTAACTGAAATTGTCTTGCAGTTTCCGTCGACGGCGGCTCAGCTAAGTGCTCGATTGAGTCGCAGCTGTATGAAAATAGACCACTGCGTCATTGAATACAGGCAACAAGTGCCTATTAACGCATCTGGAACGGTGATAGTGGAGATCCATGACAAAAGGATGCAGGACAATGAGTCATTACAAGCGTCGTGGACATTTCCGATCAGATGTAACATAGATCTACATTATTTTTCATCGTCGTTCTTCTCGTTAAAAGATCCTATACCTTGGAAGTTATATTACAAGGTCAGTGACTCGAATGTACACCAAAGGACGCACTTCGCCAAGTTCAAAGGGAAACTCAAACTGTCTACTGCGAAAAATTCAGTGGATATACCTTTCCGAGCACCCACGGTCAGGATCTTGTCGAAACAGTTTACGGAGAAGGATATTGATTTCCATCACGTGGGTTTCGGAAAGTGGGAGAGAAGACTAGTCCGTTCCGCATCGTCACGAATAATTGGGCTACCAGGCCCAATAGAAATAAGGCCTGGGGAATCTTGGGCTAGTAGAAGTACCATAGGAACAGCCCATTCAAATGCGGAATCGGAGGTTACTGACGCACTATACCCTTACAGAGAGCTGAACAGATTAAGCACCCCTATTTTAGACCCAGGTGATTCTGCGTCAGTAATTGGGATTCAGCGAACGGAGTCCAACTTAACAATGTCTATGTCACAGTTAAATGACATTGTCAGGTCAACTGTTCAAGAGTGTATTAACACAAACTGTGTTCCTCCCGTGCCCAAATCTTTGAAATGA |
| Protein Sequence | MDSQLVIPPNAFNYIDSHREEYQLSHDLTEIVLQFPSTAAQLSARLSRSCMKIDHCVIEYRQQVPINASGTVIVEIHDKRMQDNESLQASWTFPIRCNIDLHYFSSSFFSLKDPIPWKLYYKVSDSNVHQRTHFAKFKGKLKLSTAKNSVDIPFRAPTVRILSKQFTEKDIDFHHVGFGKWERRLVRSASSRIIGLPGPIEIRPGESWASRSTIGTAHSNAESEVTDALYPYRELNRLSTPILDPGDSASVIGIQRTESNLTMSMSQLNDIVRSTVQECINTNCVPPVPKSLK |
| 1 |
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|---|---|
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First Report of Tomato yellow leaf curl virus in Tomato in Costa Rica. Barboza N, et al. Plant Dis. 2014 May;98(5):699. doi: 10.1094/PDIS-08-13-0881-PDN. PMID: 30708517 |
| 5 |
Zhang S, et al. Mol Plant Pathol. 2022 Sep;23(9):1262-1277. doi: 10.1111/mpp.13229. Epub 2022 May 22. PMID: 35598295 |
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Introduction of the Exotic Tomato yellow leaf curl virus-Israel in Tomato to Puerto Rico. Bird J, et al. Plant Dis. 2001 Sep;85(9):1028. doi: 10.1094/PDIS.2001.85.9.1028B. PMID: 30823090 |
| 7 |
Kon T, et al. Arch Virol. 2024 Apr 30;169(5):113. doi: 10.1007/s00705-024-06035-1. PMID: 38684570 |
| 8 |
Taino Tomato Mottle Virus, a New Bipartite Geminivirus from Cuba. Ramos PL, et al. Plant Dis. 1997 Sep;81(9):1095. doi: 10.1094/PDIS.1997.81.9.1095C. PMID: 30861977 |
| 9 |
Lett JM, et al. Arch Virol. 2015 Nov;160(11):2887-90. doi: 10.1007/s00705-015-2558-0. Epub 2015 Aug 9. PMID: 26255054 |
| 10 |
First Report of Tomato yellow ring virus (Tospovirus, Bunyaviridae) Infecting Tomato in Kenya. Birithia R, et al. Plant Dis. 2012 Sep;96(9):1384. doi: 10.1094/PDIS-05-12-0462-PDN. PMID: 30727189 |