Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000843525.4 |
Isolate | Venezuela: Merida |
Release date | 2017/10/11 |
Submitter | Nava,A., Londono,A., Polston,J.E., Nava,A.R., Patte,C.P., Hiebert,E., Palston,J.E. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_006456.1 |
---|---|
Location | 186-932 |
Gene Name | cp |
Protein Name | CP |
Coding Region | ATGCCTAAGCGCGATGCTCCTTGGCGCTTATCGGCTGGGACCACTAAGGTCAGTCGTTCCTCCAATTATTCCCCTAGGAGTAATATGGGCCCAAAGGCCTCTGCTTGGGTTAATAGGCCCATGTACAGGAAGCCCAGAATTTACAGGACGTTAAGGGGGCCTGATATTCCTAAGGGTTGTGAAGGCCCATGTAAAGTTCAGTCCTTCGAGCAGAGGCATGATATTTCTCATGTTGGCAAGGTGCTTTGTGTTTCTGATGTGACACGTGGTAACGGTATTACCCACCGTGTAGGCAAGAGGTTCTGTGTCAAGTCTGTGTATATCTTAGGCAAGGTATGGATGGACGAGAATATCAAGTTGAAGAACCACACCAACAGCGTCATGTTCTGGTTGGTCAGAGACCGGAGACCTTATGGAACCCCCATGGACTTTGGCCAAGTGTTTAACATGTTTGATAACGAGCCAAGTACTGCCACTGTGAAGAACGATCTCCGTGATCGTTTCCAGGTTATGCACAAGTTTTATGCTAAGGTTACCGGTGGACAATATGCCAGCAATGAGCAAGCCTTGGTCAGGAGATTCTGGAAGGTCAACAACCATGTGGTGTACAACCATCAAGAAGCAGGGAAATACGAGAACCACACTGAGAATGCTCTATTATTGTATATGGCATGTACCCATGCGTCTAATCCTGTGTATGCTACATTAAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAA |
Protein Sequence | MPKRDAPWRLSAGTTKVSRSSNYSPRSNMGPKASAWVNRPMYRKPRIYRTLRGPDIPKGCEGPCKVQSFEQRHDISHVGKVLCVSDVTRGNGITHRVGKRFCVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHKFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
NCBI Accession | YP_006457.1 |
---|---|
Location | 929-1327 |
Gene Name | ren |
Protein Name | REn |
Coding Region | ATGGATTCACGCACAGGGGAAACCATCACTGCTCGTCAGGCACAGAATGGCGTTTTTATCTGGGAGGTGCCGAATCCCCTCTTTTTCAAGATTCAACGAGTGGAGGACCCTCTGTACACAACGACCAGAGTGTACCACATCCAAATCAGGTTCAACCACAACCTGAGGAAGGCATTGACTCTACACAAGGCCTATCTGAACTTCCAAGTCTGGACGACATCAGTTCAAGCTTCTGGGACGACATATTTAAATAGATTCAAACATTATGTCTTGTTGTATTTAGATCAGTTAGGAGTTATTTCAATAAACAATGTAATCAGAGCTGTTAGTTATGCAACAGACAGAAAATATGTAAACCATGTGCTTGAAGATCATGAAATAAAATTCAAACTTTATTAA |
Protein Sequence | MDSRTGETITARQAQNGVFIWEVPNPLFFKIQRVEDPLYTTTRVYHIQIRFNHNLRKALTLHKAYLNFQVWTTSVQASGTTYLNRFKHYVLLYLDQLGVISINNVIRAVSYATDRKYVNHVLEDHEIKFKLY |
NCBI Accession | YP_006458.1 |
---|---|
Location | 1074-1460 |
Gene Name | trap |
Protein Name | TrAP |
Coding Region | ATGCAAAATTCATCTTCCTCGACTCCCCCCTCTATTAAACCAACACATCGTCTTGCAAAGAGAAGACCCCGACGTAAAAGAATAGACCTAAGCTGCGGGTGTACCATATACGTCCATCTCCTCTGCAGCAACTATGGATTCACGCACAGGGGAAACCATCACTGCTCGTCAGGCACAGAATGGCGTTTTTATCTGGGAGGTGCCGAATCCCCTCTTTTTCAAGATTCAACGAGTGGAGGACCCTCTGTACACAACGACCAGAGTGTACCACATCCAAATCAGGTTCAACCACAACCTGAGGAAGGCATTGACTCTACACAAGGCCTATCTGAACTTCCAAGTCTGGACGACATCAGTTCAAGCTTCTGGGACGACATATTTAAATAG |
Protein Sequence | MQNSSSSTPPSIKPTHRLAKRRPRRKRIDLSCGCTIYVHLLCSNYGFTHRGNHHCSSGTEWRFYLGGAESPLFQDSTSGGPSVHNDQSVPHPNQVQPQPEEGIDSTQGLSELPSLDDISSSFWDDIFK |
NCBI Accession | YP_006459.1 |
---|---|
Location | 1423-2457 |
Gene Name | rep |
Protein Name | REP |
Coding Region | ATGCCTACTGCACGTGCCTTTAAAATTAATGCCAAGAATTATTTCCTTACATACCCCAAGTGCTCTCTATCCAAAGAAGAAGCACTTTCCCAATTACAAAACCTAATCACTCCGACAAACAAGAAATTCATTAAAGTGTGCAAAGAATTGCATGAAGATGGGGAACCGCATCTGCATGTGCTTATCCAGTTCGAAGGCAAGTACCAGTGCAAAAATAACAGATTCTTCGATCTGGTTTCCCCAACCAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTACATTGATAAGGACGGAGACACAATTCAATGGGGGGAATTCCAGATCGACGGAAGATCTGCTAGAGGAGGTCAGCAATCTGCTAATGACACATACGCAAAGGCATTAAATGCTAGGTCATCTGAAGAAGCGTTGCAGATTATAAAGGAAGAACAACCGCAACACTTCTTTCTTCAACATCATAACTTGTTAGCCAATGCAACCAAAATATTTCGTAAACCTCCTGAACCATGGGTCCCTCCTTTTCGACTATCGTCATTCATAAATGTTCCAGTTGATATGCAAGAATGGGCAGATGATTATTTTGGGAGGGATTCCGCTGCGCGGCCAGAAAGACCTATAAGTTTAATCGTTGAAGGTGATTCTAGAACAGGGAAAACAATGTGGGCACGTGCATTAGGTTCTCATAATTACCTAAGTGGTCACATGGATTTCAATTCTAGGGTTTACTCAAACGATGTAGAGTATAACGTCATTGATGATGTCAACCCACAATATTTAAAAATAAAGCACTGGAAAGAATTGATTGGGGCCCAGAAAGACTGGCAGTCCAACTGTAAATATGGAAAGCCTGTTCAAATTAAAGGTGGAATTCCCGCTATCGTGCTTTGCAATCCAGGGGAGGGGTCTTCCTATAAAAGGTACCTAGACAAAGAGGAAAATACATCTCTCAGAGCGTGGACACTCCATAATGCAAAATTCATCTTCCTCGACTCCCCCCTCTATTAA |
Protein Sequence | MPTARAFKINAKNYFLTYPKCSLSKEEALSQLQNLITPTNKKFIKVCKELHEDGEPHLHVLIQFEGKYQCKNNRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYIDKDGDTIQWGEFQIDGRSARGGQQSANDTYAKALNARSSEEALQIIKEEQPQHFFLQHHNLLANATKIFRKPPEPWVPPFRLSSFINVPVDMQEWADDYFGRDSAARPERPISLIVEGDSRTGKTMWARALGSHNYLSGHMDFNSRVYSNDVEYNVIDDVNPQYLKIKHWKELIGAQKDWQSNCKYGKPVQIKGGIPAIVLCNPGEGSSYKRYLDKEENTSLRAWTLHNAKFIFLDSPLY |
NCBI Accession | YP_006460.1 |
---|---|
Location | 2043-2306 |
Gene Name | ac4 |
Protein Name | AC4 |
Coding Region | ATGAAGATGGGGAACCGCATCTGCATGTGCTTATCCAGTTCGAAGGCAAGTACCAGTGCAAAAATAACAGATTCTTCGATCTGGTTTCCCCAACCAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTACATTGATAAGGACGGAGACACAATTCAATGGGGGGAATTCCAGATCGACGGAAGATCTGCTAGAGGAGGTCAGCAATCTGCTAATGACACATACGCAAAGGCATTAA |
Protein Sequence | MKMGNRICMCLSSSKASTSAKITDSSIWFPQPGQHISIRTFRELNPAPMSSPTLIRTETQFNGGNSRSTEDLLEEVSNLLMTHTQRH |
NCBI Accession | YP_006461.1 |
---|---|
Location | 382-1155 |
Gene Name | nsp |
Protein Name | NSP |
Coding Region | ATGTATCCAGTTAGATATAAACCTGATGCTAATAATTATAAGAGGAGATATTATTCACGTTCTAATGTGTTTAAGAGATCATCTGGTGTTAAACGTGCAGATGGGAAACGTAGAGCTACCCAACAAAATAAGTCTCATGAAGAGCCCAAGATGTCAGCCCAACGTATTCATGAGAATCAATATGGACCTGAATTTGTAATGACTCATATATATCTGCTATTTCCACATATATTAACTACCCCCATTTGGGTAAGATTGAACCTAACCCGAAGCAGGTCGTATATTAAGTTGAAACGACTCAGGTTTAAGGGAACTGTTAAGATTGAACGAGTACATGCTGATGTTGCCATGGATGGTTTACCCCCTAAGATTGAAGGTGTTTTTTCACTTGTTATTGTGGTGGATCGTAAACCTCATTTGAGTCCTTCAGGATCTCTGCTCACATTTGATGAGTTATTTGGTGCAAGGATTAATAGTCATGGTAATTTAGCGATAGCTTCCTCCTTCAAAGACAGATTCTACATTCGTCATGTGTTGAAGCGTGTTTTATCTGTGGAGAAGGATAGTACAATGGTCGACCTTGAAGGATCAACGTCACTCTCTAATAGGCGTTATAATTGTTGGGCTAGTTTTAAGGACTTAGATCATGACTCTTGTAAGGGTGTTTATGATAATATAAGCAAGAACGCCCTATTAATTTATTATTGTTGGATGTCTGATGTCACTTCTAAGGCATCTACCTTTGTATCATTTGATCTTGATTATGTTGGATGA |
Protein Sequence | MYPVRYKPDANNYKRRYYSRSNVFKRSSGVKRADGKRRATQQNKSHEEPKMSAQRIHENQYGPEFVMTHIYLLFPHILTTPIWVRLNLTRSRSYIKLKRLRFKGTVKIERVHADVAMDGLPPKIEGVFSLVIVVDRKPHLSPSGSLLTFDELFGARINSHGNLAIASSFKDRFYIRHVLKRVLSVEKDSTMVDLEGSTSLSNRRYNCWASFKDLDHDSCKGVYDNISKNALLIYYCWMSDVTSKASTFVSFDLDYVG |
NCBI Accession | YP_006462.1 |
---|---|
Location | 1211-2092 |
Gene Name | mp |
Protein Name | MP |
Coding Region | ATGGAGTCTCAGCTAGTTAATCCTCCGAGTGCTTTTAATTACATAGAGTCTCATAGAGATGAATACCAGTTATCTCATGACCTAACAGAGATTATTCTGCAGTTTCCTTCCACTGCTGCACAATTAACAGCAAGACTCAGTCGTAGCTGTATGAAGATAGACCACTGTGTCATAGAATACAGGCAACAGGTTCCGATTAACGCAACAGGGACTGTAATTGTGGAGATACATGATAAGAGAATGACAGACAATGAATCATTACAGGCGTCCTGGACATTCCCTATACGTTGTAACATAGATCTCCATTACTTCTCATCTTCCTTCTTCTCTCTTAAGGATCCTATACCATGGAAGTTATACTACAGAGTGTGTGACTCAAATGTTCATCAAAGAACACACTTTGCCAAATTCAAAGGCAAGCTCAAGATCTCAACAGCTAAACACTCTGTAGACATCCCATTCCGTGCACCAACAGTGAAGATTCATTCCAAACAATTCACAGAGAATGATGTTGATTTCTCACACGTGGACTACGGGAAATGGGATAGGAAACTCATAAGATCCACAACAATGTCAAGGGTTGGGTTAAAGACTCCACTGGAATTAAGACCAGGAGAATCATGGGCATCAAGAAGTACCATAGGAATGGGTCATACAGACACAGACTCTGAACTGGAGAACGCAATACACCCATACAGACATCTAAACAGACTGGGGTCCTGCACATTAGACCCTGGAGAGTCAGCTTCAGTGATAGGGGAACAAAGGGCTCAATCAAACATCACCATGTCAATGAACCAGCTTAACGAACTTGTTAAGGCAACAGTCCATGAATGTATTAACAATAATTGTAACCCAACACCACCAAAGTCATTGAAATAA |
Protein Sequence | MESQLVNPPSAFNYIESHRDEYQLSHDLTEIILQFPSTAAQLTARLSRSCMKIDHCVIEYRQQVPINATGTVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYFSSSFFSLKDPIPWKLYYRVCDSNVHQRTHFAKFKGKLKISTAKHSVDIPFRAPTVKIHSKQFTENDVDFSHVDYGKWDRKLIRSTTMSRVGLKTPLELRPGESWASRSTIGMGHTDTDSELENAIHPYRHLNRLGSCTLDPGESASVIGEQRAQSNITMSMNQLNELVKATVHECINNNCNPTPPKSLK |
1 |
First Report of Tomato yellow leaf curl virus in Hawaii. Melzer MJ, et al. Plant Dis. 2010 May;94(5):641. doi: 10.1094/PDIS-94-5-0641B. PMID: 30754444 |
---|---|
2 |
Nava A, et al. Arch Virol. 2013 Feb;158(2):399-406. doi: 10.1007/s00705-012-1501-x. Epub 2012 Oct 14. PMID: 23064695 |
3 |
First Report of Tomato yellow leaf curl virus in Tomato in Mauritius. Lobin K, et al. Plant Dis. 2010 Oct;94(10):1261. doi: 10.1094/PDIS-01-10-0030. PMID: 30743598 |
4 |
First Report of Tomato yellow leaf curl virus in Tomato in the Netherlands. Botermans M, et al. Plant Dis. 2009 Oct;93(10):1073. doi: 10.1094/PDIS-93-10-1073C. PMID: 30754363 |
5 |
Tomato yellow leaf curl virus, the intracellular dynamics of a plant DNA virus. Gafni Y. Mol Plant Pathol. 2003 Jan 1;4(1):9-15. doi: 10.1046/j.1364-3703.2003.00147.x. PMID: 20569358 |
6 |
First Report of Tomato yellow leaf curl virus Infecting Tomato, Tomatillo, and Peppers in Guatemala. Salati R, et al. Plant Dis. 2010 Apr;94(4):482. doi: 10.1094/PDIS-94-4-0482C. PMID: 30754504 |
7 |
First Report of Tomato Yellow Leaf Curl Virus in Réunion Island. Peterschmitt M, et al. Plant Dis. 1999 Mar;83(3):303. doi: 10.1094/PDIS.1999.83.3.303B. PMID: 30845523 |
8 |
A New Tomato yellow leaf curl virus Strain in Southern Spain. Morilla G, et al. Plant Dis. 2003 Aug;87(8):1004. doi: 10.1094/PDIS.2003.87.8.1004B. PMID: 30812778 |
9 |
First Report of Tomato Yellow Leaf Curl Virus in Tomato in South Georgia. Momol MT, et al. Plant Dis. 1999 May;83(5):487. doi: 10.1094/PDIS.1999.83.5.487C. PMID: 30845549 |
10 |
Rojas MR, et al. Plant Dis. 2007 Aug;91(8):1056. doi: 10.1094/PDIS-91-8-1056A. PMID: 30780456 |