Tomato yellow leaf deformation dwarf virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_018587685.1
Isolate Brazil
Release date 2021/6/1
Submitter Pereira-Carvalho,R.C., Reis-Goncalves,V.P.M., Boiteux,L.S., Fonseca,M.E.N., Naito,F.Y., Rojas,M.R., Gilbertson,R.L.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_055586
ACTGGATGGCCGCGATTTTTTTCCCCCCCTCATGACGTGGCGCTCGCTCCCCGACCCGCTCCCGCAATTCGCGCCGCATTGTCGGCCATTATATGTGGTCCCTTTCAGATAAAGACAAATTTGACTGACCAATCCGACTTGGGCCTCTGGGCCTATTTGTTTAAAAATACTTGGGCGCTAAGTTGTTATATAAAGGGTTATGATATGATGGCCCAATAAGCTTTATTTCAAAAATGCCTAAGCGGTATCCCCCATTCCGCACAACGGCGGGAACGTCCAAGATTTCCCGCACGTCCAATTTATCTCCTCGTGGGGGTGTTCGGCCCAAATTCGACAAGGCCGCAGAGTGGGTCAACAGGCCCATGTACAGGAAGCCCAGGATATACCGGACGTTGAGAAGCCCAGACATTCCGAGGGGTTGTGAAGGGCCTTGTAAAGTCCAATCGTTCGAACAGCGTCATGACGTCTCTCATACCGGGAAGGTGTTGTGTATATCTGATGTGACACGGGGTAATGGCATTACTCACCGTGTCGGTAAACGTTTTTGCGTTAAGTCTGTATATATATTAGGGAAGGTATGGATGGACGACAATATTAAGCTGAAGAACCATACGAATAGCGTATTGTTCTGGTTAGTTAGGGACAGGAGGCCGTATGGTACCCCTATGGACTTCGGCCAGGTGTTCAACATGTACGATAACGAGCCCAGTACTGCGACTGTGAAGAACGATCTCCGCGATCGTCTCCAAGTCATGCACAGGTTCTCCGCGAAGGTTACGGGTGGACAGTATGCCAGTAACGAGCAGGCTGTGGTGCGGCGTTTTTGGAAGGTGTACAATCATGTGGTCTACAACCATCAGGAGGCCGCGAAGTACGAGAAYCACACGGAGAATGCCCTGTTATTGTATATGGCATGTACTCATGCCTCGAACCCTGTATATGCAACCCTTAAGATCCGGATCTATTTTTATGATTCGATCTTAAATTAATAAAAATTGAACTTTATTGAATGATCCTCCAGTACATCTGTTACATACGTCTTGTCTGTTGCGAATTGAACAGCTCTAATGACATTATTAATTGAGATTACGCCTAATTGATCTAAATACATATTGACTAAGAATTTAAATCTATTTAAATAAGTCGTCCCAGAAGCTGTCAGAGAAGTCGTCCAGACTTGGAAGTTGAAGTATGCCTTGTGGAGATCCAACGCTCTCCTCAGGTTGTGGTTGAATCGTATCTGGACATGGTACACTGTCGTGTTGGCGTGGAGCAAAATCTCCACGTTGGTTATCTTGAAATACAGGGGATTTTGCACCTCCCAGGTATACACGCCATTCTCCGCTTGACGTCGCGTGATGCGTTCCCCTGTGCGTGAATCCATGTCCTCGGCAGTCGATGTGGAGGTATATTGAGCAACCGCACTCTAAATCAATTCGTCTTCTCCGAATGGCCCTCTTCTTCTTGGCTATTCTGTGTTGTGGTTTGATAGAGGGGGGAGTTGAGGAAGACGAATTTTGCATTGTGGAGAGTCCAGTTCTTGAGTGACAGATTCTCCTCTTTGTCGAGGAACTCTTTATAACTGGACCCCTCGCCTGGATTGCAAAGCACGATTGAGGGTATGCCGCCTTTAATTTGAACCGGCTTTCCGTATTTGCAATTTGATTGCCAGTCCCTTTGGGCCCCAATCAATTCTTTCCTGTGCTTCATCTTTAGGTAGTGCGGTGCGACGTCATCAATGACGTTATAATCCACATCATTTGAATAAACCCTAGAATTGAAATCCAGGTGTCCACTCAAATAATTGTGAGATCCCAAAGCACGTGCCCACATCGTCTTGCCGGTTCTTGAATCACCCTCCACGATGATGGACACTGGCCTGAGACTATTATGAAAATGTGGCCGCGCAGCGGAAAGACGACCAAAATAATCATCCGCCCACTCTTGCATCTCATCCGGAACGTTAGTGAAAGAGGAGAGTTGAAACGGAGGAGTCCATGGCTCCGGAGACTGAGCGAATATCTTGTGGATATTAGCACTGATGTTGTGATGTTGAACGATGAATGCCTTTGGATCTCCTGTCCGGATAATTGCAAGAGCCTCTGATGCAGAAGTGGCATTGATAGCGTTGTGATAGACGTCGTCTTTGTTGGTCTTTGTTCCGCCAGATATTTTGTATCGTCCGGATTCACAATAATCACCCTCTTTGGTGATGTAATTCTTGACGGCGTTGGCGTCTTTGGCTGCCTGGACGTTTGGGTGAAAATTGGCAGACCTTCTGGGGTGAGTAAGGTCGAAAAATCTAACATCCTTGATGTTCGACTTCCCTGATAGTTGTATGAGGCAGTGGAGATGAGGTTGTCCGTCAGTGTGTTCCTCTCTTGCGACTCTGATGTACGTCGGTTTGACGACCGTCCATTTGAGGGAATGAAGCATCCGAAGAACCTCATCTTTCTCTATGTCGCACTGTGGATAAGTGAGGAAGATGTTCTTAGCAGATAGCCTAAATGTAGTAGGTTGTCGTGGCATTTTTGTAAATATGAGCCAGGACACCAGGGATGGCTCTCAACTTCTGTGCTATTTGCTGGTGTCCTGGTGTCCCATTTATACTAAAACCTCCTTTGGACACCAGGGGTAAAAGCGGCCATCCTATAATATT

Gene Information

NCBI Accession YP_010087798.1
Location 234-989
Gene Name AC4
Protein Name Cp
Coding Region ATGCCTAAGCGGTATCCCCCATTCCGCACAACGGCGGGAACGTCCAAGATTTCCCGCACGTCCAATTTATCTCCTCGTGGGGGTGTTCGGCCCAAATTCGACAAGGCCGCAGAGTGGGTCAACAGGCCCATGTACAGGAAGCCCAGGATATACCGGACGTTGAGAAGCCCAGACATTCCGAGGGGTTGTGAAGGGCCTTGTAAAGTCCAATCGTTCGAACAGCGTCATGACGTCTCTCATACCGGGAAGGTGTTGTGTATATCTGATGTGACACGGGGTAATGGCATTACTCACCGTGTCGGTAAACGTTTTTGCGTTAAGTCTGTATATATATTAGGGAAGGTATGGATGGACGACAATATTAAGCTGAAGAACCATACGAATAGCGTATTGTTCTGGTTAGTTAGGGACAGGAGGCCGTATGGTACCCCTATGGACTTCGGCCAGGTGTTCAACATGTACGATAACGAGCCCAGTACTGCGACTGTGAAGAACGATCTCCGCGATCGTCTCCAAGTCATGCACAGGTTCTCCGCGAAGGTTACGGGTGGACAGTATGCCAGTAACGAGCAGGCTGTGGTGCGGCGTTTTTGGAAGGTGTACAATCATGTGGTCTACAACCATCAGGAGGCCGCGAAGTACGAGAAYCACACGGAGAATGCCCTGTTATTGTATATGGCATGTACTCATGCCTCGAACCCTGTATATGCAACCCTTAAGATCCGGATCTATTTTTATGATTCGATCTTAAATTAA
Protein Sequence MPKRYPPFRTTAGTSKISRTSNLSPRGGVRPKFDKAAEWVNRPMYRKPRIYRTLRSPDIPRGCEGPCKVQSFEQRHDVSHTGKVLCISDVTRGNGITHRVGKRFCVKSVYILGKVWMDDNIKLKNHTNSVLFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATVKNDLRDRLQVMHRFSAKVTGGQYASNEQAVVRRFWKVYNHVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSILN

NCBI Accession YP_010087799.1
Location 986-1384
Gene Name AC3
Protein Name Ren
Coding Region ATGGATTCACGCACAGGGGAACGCATCACGCGACGTCAAGCGGAGAATGGCGTGTATACCTGGGAGGTGCAAAATCCCCTGTATTTCAAGATAACCAACGTGGAGATTTTGCTCCACGCCAACACGACAGTGTACCATGTCCAGATACGATTCAACCACAACCTGAGGAGAGCGTTGGATCTCCACAAGGCATACTTCAACTTCCAAGTCTGGACGACTTCTCTGACAGCTTCTGGGACGACTTATTTAAATAGATTTAAATTCTTAGTCAATATGTATTTAGATCAATTAGGCGTAATCTCAATTAATAATGTCATTAGAGCTGTTCAATTCGCAACAGACAAGACGTATGTAACAGATGTACTGGAGGATCATTCAATAAAGTTCAATTTTTATTAA
Protein Sequence MDSRTGERITRRQAENGVYTWEVQNPLYFKITNVEILLHANTTVYHVQIRFNHNLRRALDLHKAYFNFQVWTTSLTASGTTYLNRFKFLVNMYLDQLGVISINNVIRAVQFATDKTYVTDVLEDHSIKFNFY

NCBI Accession YP_010087800.1
Location 1131-1523
Gene Name AC2
Protein Name TRaP
Coding Region ATGCAAAATTCGTCTTCCTCAACTCCCCCCTCTATCAAACCACAACACAGAATAGCCAAGAAGAAGAGGGCCATTCGGAGAAGACGAATTGATTTAGAGTGCGGTTGCTCAATATACCTCCACATCGACTGCCGAGGACATGGATTCACGCACAGGGGAACGCATCACGCGACGTCAAGCGGAGAATGGCGTGTATACCTGGGAGGTGCAAAATCCCCTGTATTTCAAGATAACCAACGTGGAGATTTTGCTCCACGCCAACACGACAGTGTACCATGTCCAGATACGATTCAACCACAACCTGAGGAGAGCGTTGGATCTCCACAAGGCATACTTCAACTTCCAAGTCTGGACGACTTCTCTGACAGCTTCTGGGACGACTTATTTAAATAG
Protein Sequence MQNSSSSTPPSIKPQHRIAKKKRAIRRRRIDLECGCSIYLHIDCRGHGFTHRGTHHATSSGEWRVYLGGAKSPVFQDNQRGDFAPRQHDSVPCPDTIQPQPEESVGSPQGILQLPSLDDFSDSFWDDLFK

NCBI Accession YP_010087801.1
Location 1432-2529
Gene Name AC1
Protein Name REp
Coding Region ATGCCACGACAACCTACTACATTTAGGCTATCTGCTAAGAACATCTTCCTCACTTATCCACAGTGCGACATAGAGAAAGATGAGGTTCTTCGGATGCTTCATTCCCTCAAATGGACGGTCGTCAAACCGACGTACATCAGAGTCGCAAGAGAGGAACACACTGACGGACAACCTCATCTCCACTGCCTCATACAACTATCAGGGAAGTCGAACATCAAGGATGTTAGATTTTTCGACCTTACTCACCCCAGAAGGTCTGCCAATTTTCACCCAAACGTCCAGGCAGCCAAAGACGCCAACGCCGTCAAGAATTACATCACCAAAGAGGGTGATTATTGTGAATCCGGACGATACAAAATATCTGGCGGAACAAAGACCAACAAAGACGACGTCTATCACAACGCTATCAATGCCACTTCTGCATCAGAGGCTCTTGCAATTATCCGGACAGGAGATCCAAAGGCATTCATCGTTCAACATCACAACATCAGTGCTAATATCCACAAGATATTCGCTCAGTCTCCGGAGCCATGGACTCCTCCGTTTCAACTCTCCTCTTTCACTAACGTTCCGGATGAGATGCAAGAGTGGGCGGATGATTATTTTGGTCGTCTTTCCGCTGCGCGGCCACATTTTCATAATAGTCTCAGGCCAGTGTCCATCATCGTGGAGGGTGATTCAAGAACCGGCAAGACGATGTGGGCACGTGCTTTGGGATCTCACAATTATTTGAGTGGACACCTGGATTTCAATTCTAGGGTTTATTCAAATGATGTGGATTATAACGTCATTGATGACGTCGCACCGCACTACCTAAAGATGAAGCACAGGAAAGAATTGATTGGGGCCCAAAGGGACTGGCAATCAAATTGCAAATACGGAAAGCCGGTTCAAATTAAAGGCGGCATACCCTCAATCGTGCTTTGCAATCCAGGCGAGGGGTCCAGTTATAAAGAGTTCCTCGACAAAGAGGAGAATCTGTCACTCAAGAACTGGACTCTCCACAATGCAAAATTCGTCTTCCTCAACTCCCCCCTCTATCAAACCACAACACAGAATAGCCAAGAAGAAGAGGGCCATTCGGAGAAGACGAATTGA
Protein Sequence MPRQPTTFRLSAKNIFLTYPQCDIEKDEVLRMLHSLKWTVVKPTYIRVAREEHTDGQPHLHCLIQLSGKSNIKDVRFFDLTHPRRSANFHPNVQAAKDANAVKNYITKEGDYCESGRYKISGGTKTNKDDVYHNAINATSASEALAIIRTGDPKAFIVQHHNISANIHKIFAQSPEPWTPPFQLSSFTNVPDEMQEWADDYFGRLSAARPHFHNSLRPVSIIVEGDSRTGKTMWARALGSHNYLSGHLDFNSRVYSNDVDYNVIDDVAPHYLKMKHRKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKEFLDKEENLSLKNWTLHNAKFVFLNSPLYQTTTQNSQEEEGHSEKTN

References More References in PubMed

1

First report of tomato leaf curl New Delhi virus infecting several cucurbit plants in China.

Gu Q, et al.  Plant Dis. 2023 Apr 20. doi: 10.1094/PDIS-01-23-0180-PDN. Online ahead of print.

PMID: 37081636
2

Tomato chlorotic leaf distortion virus, a new bipartite begomovirus infecting Solanum lycopersicum and Capsicum chinense in Venezuela.

Zambrano K, et al.  Arch Virol. 2011 Dec;156(12):2263-6. doi: 10.1007/s00705-011-1093-x. Epub 2011 Aug 19.

PMID: 21853328
3

First Report of Tomato Mottle Geminivirus Infecting Tomatoes in Yucatan, Mexico.

Garrido-Ramirez ER, et al.  Plant Dis. 1998 May;82(5):592. doi: 10.1094/PDIS.1998.82.5.592B.

PMID: 30857003