Tomato yellow leaf curl Yunnan virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000909115.1
Isolate China
Release date 2015/2/22
Submitter Ding,M., Li,W.H., Zhang,Z.K., Zhou,X.P.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_021341
ACCGGATGGCCGCGATTTTTTTAAAGTGGTCCCCTCCACTAACTCTTGTCGCCCACTAGAAACGCTCCCTCATCGCTTATTTAAATGTTTTTGTCTTATATATATGACTTGCCAAACAAGTGGGTTTCGTAGTGCGATGTGGGATCCACTCTTGAATGAATTCCCAGAAACCGTACATGGTTTTAGGTGTATGTTAGCAATTAAGTATTTACAATTAGTAGAAAATACATATTCTCCTGATACATTAGGGTACGATTTAATTCGTGATTTAATATTAGTTATTCGTGCTAGAGATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACACCCGCTTCCAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAACAGGCCCATGTACCGAAAGCCCAAGATGTACAGGATGTACAAAAGTCCTGATGTTCCTCGTGGATGCGAAGGCCCATGTAAGGTCCAGTCTTATGAACAACGTCACGATGTGGCCCATGTAGGTAAAGTAATTTGTGTGTCGGATGTCACCCGTGGTAATGGGTTGACGCATAGAGTGGGGAAGAGGTTCTGTGTCAAGTCTATTTACGTTTTAGGTAAGATCTGGATGGATGAGAACATTAAGACCAAGAATCACACCAATACAGTCATGTTCTTTTTGGTTCGTGATAGGAGACCATTTGGTACTCCTCAAGATTTTGGTCAGGTTTTTAACATGTATGATAACGAGCCAAGTACAGCCACTGTGAAGAACGACAACAGAGATCGTTTTCAGGTCCTTCGTCGATTCCAGGCGACGGTGACGGGTGGTCAGTATGCAAGCAAGGAGCAAGCCATAGTTAGGAAATTCATGAAGGTTAATAATCATGTTACTTACAATCATCAAGAGGCTGCGAAGTATGATAACCATACAGAGAATGCTCTTTTATTGTATATGGCATGTACTCATGCTAGTAACCCAGTGTATGCTACTTTGAAGATCAGGATCTATTTCTATGATTCTGTTCAAAATTAATAAAGTTCGAATTTTATTATATTTGAATGATCTACATAAATTGTTCCGTGCAAAACATCCCATAATACATGATTCACAGATCGAATTACATTATTAATGGATACAATCCCTAAATTATTTAAGTATTGCATACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCCAGATCTGGAAGATCAGAAAACATTGGTGTAGTCCCAACGCTTTCCTCAGGTTGTGGTTGAACTGTATTCGGATCGTGATTATGTCGTGGTTCATTAAGAACGGTCGCTGGTCGTGTTTGATTATTTTGAAATATAGGGGATTTGGAACCATCCAAATATACGCGCCATTCTCTGCTTGAGTTGCAGTGATGAGTTCCCCGGTGCGAGAATCCATGATTGGCGCAGTTTATTGAGTAATAATATGTGCAGCCACGGGGTAGATCAACTCTCCGGCGTCGCACGCTCTTCTTCGCTATTCTGTGTTGGACCTTGATTGGTACTTGAGTACAATGGTTCCGTGAGGGTGATGAATTCTGCATTCTTTAGAGCCCAAGCTTTTAGTGCGGAATTCTTATCCTCGTCCAAGTACTCTTTATATGATGATGTTGGTCCAGGATTGCATAGGAAGATTGTCGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAGTGCTTTAGGTAGTGGGGATCTACGTCATCAACCACGTTGTACCACGCATCATTGCTGTATACTTTAGGGCTTAGATCAAGGTGCCCACATAAATAATTATGTGGACCCAGTGACCGTGCCCACATAGTCTTCCCTGTACGACTCTCACCCTCTATGACTATACTTATGGGTCTCCATGGCCGCGCAGCGGCATCCCTTACATTATCGGCAGCCCAGCATTCAAGTTCTTCTGGAACTCGATCGAACGAAGACGATAAAAATGGACAAACAAATTCCTCTAGAGGAGGTGCAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAAAACGAAATCTTTGGGGGCTAATTCCTTAATTACGATAAGAGCCTCTGACTTACTTCCGCTGTTAAGCGCCTTGGCGTAAGCGTCATTGGCTGATTGTTGTCCCCCTCTTGCAGATCTTGCATCGATCTGAAACTCTCCCCATTCGATGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAATCGAAGAATCTGTTATTTTGGCACTTGTATTTTCCTTCGAATTGGATAAGCACGTGGAGATGAGGAGACCCATCTTCGTGAAGCTCTCTGCAGATTTTTATGTATTTTTTATTTGTAGGGGTTTGTAGGTTTTGTAATTGGGAAAGTGCTTCTTCTTTTGTAAGTGAGCACTGTGGATAAGTGAGGAAATAATTTTTGGCGTATATTTGGAAACGTTTGGGAGGAGTCATTTGACTGGTCAATCGGTACTCAACAAACTCCGCTATGCAATCGGTGATTGGTACTCAATATATAGTTGAGTACCAAATGGCATTATTGTAATTCCCAAAAGAAATTCAAAATTAAATTTTGAAATCCAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_008060398.1
Location 104-487
Gene Name AV2
Protein Name AV2 protein
Coding Region ATGACTTGCCAAACAAGTGGGTTTCGTAGTGCGATGTGGGATCCACTCTTGAATGAATTCCCAGAAACCGTACATGGTTTTAGGTGTATGTTAGCAATTAAGTATTTACAATTAGTAGAAAATACATATTCTCCTGATACATTAGGGTACGATTTAATTCGTGATTTAATATTAGTTATTCGTGCTAGAGATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACACCCGCTTCCAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAACAGGCCCATGTACCGAAAGCCCAAGATGTACAGGATGTACAAAAGTCCTGA
Protein Sequence MTCQTSGFRSAMWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVIRARDYVEASRRYSHFHTRFQGSSPSELRQPICQPCCCPHCPRHKQKEVMGEQAHVPKAQDVQDVQKS

NCBI Accession YP_008060399.1
Location 297-1070
Gene Name AV1
Protein Name CP protein
Coding Region ATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACACCCGCTTCCAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAACAGGCCCATGTACCGAAAGCCCAAGATGTACAGGATGTACAAAAGTCCTGATGTTCCTCGTGGATGCGAAGGCCCATGTAAGGTCCAGTCTTATGAACAACGTCACGATGTGGCCCATGTAGGTAAAGTAATTTGTGTGTCGGATGTCACCCGTGGTAATGGGTTGACGCATAGAGTGGGGAAGAGGTTCTGTGTCAAGTCTATTTACGTTTTAGGTAAGATCTGGATGGATGAGAACATTAAGACCAAGAATCACACCAATACAGTCATGTTCTTTTTGGTTCGTGATAGGAGACCATTTGGTACTCCTCAAGATTTTGGTCAGGTTTTTAACATGTATGATAACGAGCCAAGTACAGCCACTGTGAAGAACGACAACAGAGATCGTTTTCAGGTCCTTCGTCGATTCCAGGCGACGGTGACGGGTGGTCAGTATGCAAGCAAGGAGCAAGCCATAGTTAGGAAATTCATGAAGGTTAATAATCATGTTACTTACAATCATCAAGAGGCTGCGAAGTATGATAACCATACAGAGAATGCTCTTTTATTGTATATGGCATGTACTCATGCTAGTAACCCAGTGTATGCTACTTTGAAGATCAGGATCTATTTCTATGATTCTGTTCAAAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYVSRAAAPTVLVTNKRRSWVNRPMYRKPKMYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTHRVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN

NCBI Accession YP_008060400.1
Location 1067-1471
Gene Name AC3
Protein Name REn protein
Coding Region ATGGATTCTCGCACCGGGGAACTCATCACTGCAACTCAAGCAGAGAATGGCGCGTATATTTGGATGGTTCCAAATCCCCTATATTTCAAAATAATCAAACACGACCAGCGACCGTTCTTAATGAACCACGACATAATCACGATCCGAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGACTACACCAATGTTTTCTGATCTTCCAGATCTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAGGGTTCAATGTATGCAATACTTAAATAATTTAGGGATTGTATCCATTAATAATGTAATTCGATCTGTGAATCATGTATTATGGGATGTTTTGCACGGAACAATTTATGTAGATCATTCAAATATAATAAAATTCGAACTTTATTAA
Protein Sequence MDSRTGELITATQAENGAYIWMVPNPLYFKIIKHDQRPFLMNHDIITIRIQFNHNLRKALGLHQCFLIFQIWTRLQPQTWRFLRVFRVQCMQYLNNLGIVSINNVIRSVNHVLWDVLHGTIYVDHSNIIKFELY

NCBI Accession YP_008060401.1
Location 1212-1616
Gene Name AC2
Protein Name TrAP protein
Coding Region ATGCAGAATTCATCACCCTCACGGAACCATTGTACTCAAGTACCAATCAAGGTCCAACACAGAATAGCGAAGAAGAGCGTGCGACGCCGGAGAGTTGATCTACCCCGTGGCTGCACATATTATTACTCAATAAACTGCGCCAATCATGGATTCTCGCACCGGGGAACTCATCACTGCAACTCAAGCAGAGAATGGCGCGTATATTTGGATGGTTCCAAATCCCCTATATTTCAAAATAATCAAACACGACCAGCGACCGTTCTTAATGAACCACGACATAATCACGATCCGAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGACTACACCAATGTTTTCTGATCTTCCAGATCTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAG
Protein Sequence MQNSSPSRNHCTQVPIKVQHRIAKKSVRRRRVDLPRGCTYYYSINCANHGFSHRGTHHCNSSREWRVYLDGSKSPIFQNNQTRPATVLNEPRHNHDPNTVQPQPEESVGTTPMFSDLPDLDSLTTSDLAFLKSI

NCBI Accession YP_008060402.1
Location 1519-2604
Gene Name AC1
Protein Name rep protein
Coding Region ATGACTCCTCCCAAACGTTTCCAAATATACGCCAAAAATTATTTCCTCACTTATCCACAGTGCTCACTTACAAAAGAAGAAGCACTTTCCCAATTACAAAACCTACAAACCCCTACAAATAAAAAATACATAAAAATCTGCAGAGAGCTTCACGAAGATGGGTCTCCTCATCTCCACGTGCTTATCCAATTCGAAGGAAAATACAAGTGCCAAAATAACAGATTCTTCGATTTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCATCGAATGGGGAGAGTTTCAGATCGATGCAAGATCTGCAAGAGGGGGACAACAATCAGCCAATGACGCTTACGCCAAGGCGCTTAACAGCGGAAGTAAGTCAGAGGCTCTTATCGTAATTAAGGAATTAGCCCCCAAAGATTTCGTTTTACAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTGCACCTCCTCTAGAGGAATTTGTTTGTCCATTTTTATCGTCTTCGTTCGATCGAGTTCCAGAAGAACTTGAATGCTGGGCTGCCGATAATGTAAGGGATGCCGCTGCGCGGCCATGGAGACCCATAAGTATAGTCATAGAGGGTGAGAGTCGTACAGGGAAGACTATGTGGGCACGGTCACTGGGTCCACATAATTATTTATGTGGGCACCTTGATCTAAGCCCTAAAGTATACAGCAATGATGCGTGGTACAACGTGGTTGATGACGTAGATCCCCACTACCTAAAGCACTTCAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGGAAACCAATTCAAATTAAAGGAGGTATCCCGACAATCTTCCTATGCAATCCTGGACCAACATCATCATATAAAGAGTACTTGGACGAGGATAAGAATTCCGCACTAAAAGCTTGGGCTCTAAAGAATGCAGAATTCATCACCCTCACGGAACCATTGTACTCAAGTACCAATCAAGGTCCAACACAGAATAGCGAAGAAGAGCGTGCGACGCCGGAGAGTTGA
Protein Sequence MTPPKRFQIYAKNYFLTYPQCSLTKEEALSQLQNLQTPTNKKYIKICRELHEDGSPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLEKDGDTIEWGEFQIDARSARGGQQSANDAYAKALNSGSKSEALIVIKELAPKDFVLQFHNLNANLDRIFAPPLEEFVCPFLSSSFDRVPEELECWAADNVRDAAARPWRPISIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVVDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSALKAWALKNAEFITLTEPLYSSTNQGPTQNSEEERATPES

NCBI Accession YP_008060403.1
Location 2157-2447
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGTCTCCTCATCTCCACGTGCTTATCCAATTCGAAGGAAAATACAAGTGCCAAAATAACAGATTCTTCGATTTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCATCGAATGGGGAGAGTTTCAGATCGATGCAAGATCTGCAAGAGGGGGACAACAATCAGCCAATGACGCTTACGCCAAGGCGCTTAACAGCGGAAGTAAGTCAGAGGCTCTTATCGTAA
Protein Sequence MGLLISTCLSNSKENTSAKITDSSIWYPQPGQHISIRTYRELNPAPTSSPIWRRTETPSNGESFRSMQDLQEGDNNQPMTLTPRRLTAEVSQRLLS

References More References in PubMed

1

Distinct tomato yellow leaf curl Chuxiong virus isolated from whiteflies and plants in China and its symptom determinant and suppressor of post-transcriptional gene silencing.

Xie Y, et al.  Virology. 2024 Jun;594:110040. doi: 10.1016/j.virol.2024.110040. Epub 2024 Mar 5.

PMID: 38471198
2

Development and application of triple antibody sandwich enzyme-linked immunosorbent assays for begomovirus detection using monoclonal antibodies against Tomato yellow leaf curl Thailand virus.

Seepiban C, et al.  Virol J. 2017 May 30;14(1):99. doi: 10.1186/s12985-017-0763-z.

PMID: 28558726
3

ty-5 Confers Broad-Spectrum Resistance to Geminiviruses.

Ren Y, et al.  Viruses. 2022 Aug 17;14(8):1804. doi: 10.3390/v14081804.

PMID: 36016426
4

Molecular characterization of squash leaf curl Yunnan virus, a new begomovirus and evidence for recombination.

Xie Y, et al.  Arch Virol. 2003 Oct;148(10):2047-54. doi: 10.1007/s00705-003-0153-2.

PMID: 14551824
5

First Report of Ageratum yellow vein virus Causing Tobacco Leaf Curl Disease in Fujian Province, China.

Liu Z, et al.  Plant Dis. 2008 Jan;92(1):177. doi: 10.1094/PDIS-92-1-0177B.

PMID: 30786379
6

Genomic distinctiveness and recombination in tomato leaf curl New Delhi virus (ToLCNDV-BG) isolates infecting bitter gourd.

Renukadevi P, et al.  3 Biotech. 2024 Aug;14(8):184. doi: 10.1007/s13205-024-04009-3. Epub 2024 Jul 26.

PMID: 39070236
7

Incidence and Molecular Identification of Begomoviruses Infecting Tomato and Pepper in Myanmar.

Kwak HR, et al.  Plants (Basel). 2022 Apr 10;11(8):1031. doi: 10.3390/plants11081031.

PMID: 35448759
8

Identification of a novel pepper-infecting monopartite begomovirus in China.

Li P, et al.  Arch Virol. 2021 Jun;166(6):1751-1754. doi: 10.1007/s00705-021-04989-0. Epub 2021 Mar 20.

PMID: 33743050
9

Divergent Symptoms Caused by Geminivirus-Encoded C4 Proteins Correlate with Their Ability To Bind NbSKη.

Mei Y, et al.  J Virol. 2020 Sep 29;94(20):e01307-20. doi: 10.1128/JVI.01307-20. Print 2020 Sep 29.

PMID: 32759325
10

A recombinant begomovirus resulting from exchange of the C4 gene.

Xie Y, et al.  J Gen Virol. 2013 Aug;94(Pt 8):1896-1907. doi: 10.1099/vir.0.053181-0. Epub 2013 May 29.

PMID: 23720217