Tomato yellow leaf curl Yunnan virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_000909115.1 |
| Isolate | China |
| Release date | 2015/2/22 |
| Submitter | Ding,M., Li,W.H., Zhang,Z.K., Zhou,X.P. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_021341
ACCGGATGGCCGCGATTTTTTTAAAGTGGTCCCCTCCACTAACTCTTGTCGCCCACTAGAAACGCTCCCTCATCGCTTATTTAAATGTTTTTGTCTTATATATATGACTTGCCAAACAAGTGGGTTTCGTAGTGCGATGTGGGATCCACTCTTGAATGAATTCCCAGAAACCGTACATGGTTTTAGGTGTATGTTAGCAATTAAGTATTTACAATTAGTAGAAAATACATATTCTCCTGATACATTAGGGTACGATTTAATTCGTGATTTAATATTAGTTATTCGTGCTAGAGATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACACCCGCTTCCAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAACAGGCCCATGTACCGAAAGCCCAAGATGTACAGGATGTACAAAAGTCCTGATGTTCCTCGTGGATGCGAAGGCCCATGTAAGGTCCAGTCTTATGAACAACGTCACGATGTGGCCCATGTAGGTAAAGTAATTTGTGTGTCGGATGTCACCCGTGGTAATGGGTTGACGCATAGAGTGGGGAAGAGGTTCTGTGTCAAGTCTATTTACGTTTTAGGTAAGATCTGGATGGATGAGAACATTAAGACCAAGAATCACACCAATACAGTCATGTTCTTTTTGGTTCGTGATAGGAGACCATTTGGTACTCCTCAAGATTTTGGTCAGGTTTTTAACATGTATGATAACGAGCCAAGTACAGCCACTGTGAAGAACGACAACAGAGATCGTTTTCAGGTCCTTCGTCGATTCCAGGCGACGGTGACGGGTGGTCAGTATGCAAGCAAGGAGCAAGCCATAGTTAGGAAATTCATGAAGGTTAATAATCATGTTACTTACAATCATCAAGAGGCTGCGAAGTATGATAACCATACAGAGAATGCTCTTTTATTGTATATGGCATGTACTCATGCTAGTAACCCAGTGTATGCTACTTTGAAGATCAGGATCTATTTCTATGATTCTGTTCAAAATTAATAAAGTTCGAATTTTATTATATTTGAATGATCTACATAAATTGTTCCGTGCAAAACATCCCATAATACATGATTCACAGATCGAATTACATTATTAATGGATACAATCCCTAAATTATTTAAGTATTGCATACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCCAGATCTGGAAGATCAGAAAACATTGGTGTAGTCCCAACGCTTTCCTCAGGTTGTGGTTGAACTGTATTCGGATCGTGATTATGTCGTGGTTCATTAAGAACGGTCGCTGGTCGTGTTTGATTATTTTGAAATATAGGGGATTTGGAACCATCCAAATATACGCGCCATTCTCTGCTTGAGTTGCAGTGATGAGTTCCCCGGTGCGAGAATCCATGATTGGCGCAGTTTATTGAGTAATAATATGTGCAGCCACGGGGTAGATCAACTCTCCGGCGTCGCACGCTCTTCTTCGCTATTCTGTGTTGGACCTTGATTGGTACTTGAGTACAATGGTTCCGTGAGGGTGATGAATTCTGCATTCTTTAGAGCCCAAGCTTTTAGTGCGGAATTCTTATCCTCGTCCAAGTACTCTTTATATGATGATGTTGGTCCAGGATTGCATAGGAAGATTGTCGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAGTGCTTTAGGTAGTGGGGATCTACGTCATCAACCACGTTGTACCACGCATCATTGCTGTATACTTTAGGGCTTAGATCAAGGTGCCCACATAAATAATTATGTGGACCCAGTGACCGTGCCCACATAGTCTTCCCTGTACGACTCTCACCCTCTATGACTATACTTATGGGTCTCCATGGCCGCGCAGCGGCATCCCTTACATTATCGGCAGCCCAGCATTCAAGTTCTTCTGGAACTCGATCGAACGAAGACGATAAAAATGGACAAACAAATTCCTCTAGAGGAGGTGCAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAAAACGAAATCTTTGGGGGCTAATTCCTTAATTACGATAAGAGCCTCTGACTTACTTCCGCTGTTAAGCGCCTTGGCGTAAGCGTCATTGGCTGATTGTTGTCCCCCTCTTGCAGATCTTGCATCGATCTGAAACTCTCCCCATTCGATGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAATCGAAGAATCTGTTATTTTGGCACTTGTATTTTCCTTCGAATTGGATAAGCACGTGGAGATGAGGAGACCCATCTTCGTGAAGCTCTCTGCAGATTTTTATGTATTTTTTATTTGTAGGGGTTTGTAGGTTTTGTAATTGGGAAAGTGCTTCTTCTTTTGTAAGTGAGCACTGTGGATAAGTGAGGAAATAATTTTTGGCGTATATTTGGAAACGTTTGGGAGGAGTCATTTGACTGGTCAATCGGTACTCAACAAACTCCGCTATGCAATCGGTGATTGGTACTCAATATATAGTTGAGTACCAAATGGCATTATTGTAATTCCCAAAAGAAATTCAAAATTAAATTTTGAAATCCAAAGCGGCCATCCGTATAATATT
Gene Information
| NCBI Accession | YP_008060398.1 |
|---|---|
| Location | 104-487 |
| Gene Name | AV2 |
| Protein Name | AV2 protein |
| Coding Region | ATGACTTGCCAAACAAGTGGGTTTCGTAGTGCGATGTGGGATCCACTCTTGAATGAATTCCCAGAAACCGTACATGGTTTTAGGTGTATGTTAGCAATTAAGTATTTACAATTAGTAGAAAATACATATTCTCCTGATACATTAGGGTACGATTTAATTCGTGATTTAATATTAGTTATTCGTGCTAGAGATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACACCCGCTTCCAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAACAGGCCCATGTACCGAAAGCCCAAGATGTACAGGATGTACAAAAGTCCTGA |
| Protein Sequence | MTCQTSGFRSAMWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVIRARDYVEASRRYSHFHTRFQGSSPSELRQPICQPCCCPHCPRHKQKEVMGEQAHVPKAQDVQDVQKS |
| NCBI Accession | YP_008060399.1 |
|---|---|
| Location | 297-1070 |
| Gene Name | AV1 |
| Protein Name | CP protein |
| Coding Region | ATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACACCCGCTTCCAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAACAGGCCCATGTACCGAAAGCCCAAGATGTACAGGATGTACAAAAGTCCTGATGTTCCTCGTGGATGCGAAGGCCCATGTAAGGTCCAGTCTTATGAACAACGTCACGATGTGGCCCATGTAGGTAAAGTAATTTGTGTGTCGGATGTCACCCGTGGTAATGGGTTGACGCATAGAGTGGGGAAGAGGTTCTGTGTCAAGTCTATTTACGTTTTAGGTAAGATCTGGATGGATGAGAACATTAAGACCAAGAATCACACCAATACAGTCATGTTCTTTTTGGTTCGTGATAGGAGACCATTTGGTACTCCTCAAGATTTTGGTCAGGTTTTTAACATGTATGATAACGAGCCAAGTACAGCCACTGTGAAGAACGACAACAGAGATCGTTTTCAGGTCCTTCGTCGATTCCAGGCGACGGTGACGGGTGGTCAGTATGCAAGCAAGGAGCAAGCCATAGTTAGGAAATTCATGAAGGTTAATAATCATGTTACTTACAATCATCAAGAGGCTGCGAAGTATGATAACCATACAGAGAATGCTCTTTTATTGTATATGGCATGTACTCATGCTAGTAACCCAGTGTATGCTACTTTGAAGATCAGGATCTATTTCTATGATTCTGTTCAAAATTAA |
| Protein Sequence | MSKRPADIVISTPASKVRRRLNFDSPYVSRAAAPTVLVTNKRRSWVNRPMYRKPKMYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTHRVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
| NCBI Accession | YP_008060400.1 |
|---|---|
| Location | 1067-1471 |
| Gene Name | AC3 |
| Protein Name | REn protein |
| Coding Region | ATGGATTCTCGCACCGGGGAACTCATCACTGCAACTCAAGCAGAGAATGGCGCGTATATTTGGATGGTTCCAAATCCCCTATATTTCAAAATAATCAAACACGACCAGCGACCGTTCTTAATGAACCACGACATAATCACGATCCGAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGACTACACCAATGTTTTCTGATCTTCCAGATCTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAGGGTTCAATGTATGCAATACTTAAATAATTTAGGGATTGTATCCATTAATAATGTAATTCGATCTGTGAATCATGTATTATGGGATGTTTTGCACGGAACAATTTATGTAGATCATTCAAATATAATAAAATTCGAACTTTATTAA |
| Protein Sequence | MDSRTGELITATQAENGAYIWMVPNPLYFKIIKHDQRPFLMNHDIITIRIQFNHNLRKALGLHQCFLIFQIWTRLQPQTWRFLRVFRVQCMQYLNNLGIVSINNVIRSVNHVLWDVLHGTIYVDHSNIIKFELY |
| NCBI Accession | YP_008060401.1 |
|---|---|
| Location | 1212-1616 |
| Gene Name | AC2 |
| Protein Name | TrAP protein |
| Coding Region | ATGCAGAATTCATCACCCTCACGGAACCATTGTACTCAAGTACCAATCAAGGTCCAACACAGAATAGCGAAGAAGAGCGTGCGACGCCGGAGAGTTGATCTACCCCGTGGCTGCACATATTATTACTCAATAAACTGCGCCAATCATGGATTCTCGCACCGGGGAACTCATCACTGCAACTCAAGCAGAGAATGGCGCGTATATTTGGATGGTTCCAAATCCCCTATATTTCAAAATAATCAAACACGACCAGCGACCGTTCTTAATGAACCACGACATAATCACGATCCGAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGACTACACCAATGTTTTCTGATCTTCCAGATCTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAG |
| Protein Sequence | MQNSSPSRNHCTQVPIKVQHRIAKKSVRRRRVDLPRGCTYYYSINCANHGFSHRGTHHCNSSREWRVYLDGSKSPIFQNNQTRPATVLNEPRHNHDPNTVQPQPEESVGTTPMFSDLPDLDSLTTSDLAFLKSI |
| NCBI Accession | YP_008060402.1 |
|---|---|
| Location | 1519-2604 |
| Gene Name | AC1 |
| Protein Name | rep protein |
| Coding Region | ATGACTCCTCCCAAACGTTTCCAAATATACGCCAAAAATTATTTCCTCACTTATCCACAGTGCTCACTTACAAAAGAAGAAGCACTTTCCCAATTACAAAACCTACAAACCCCTACAAATAAAAAATACATAAAAATCTGCAGAGAGCTTCACGAAGATGGGTCTCCTCATCTCCACGTGCTTATCCAATTCGAAGGAAAATACAAGTGCCAAAATAACAGATTCTTCGATTTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCATCGAATGGGGAGAGTTTCAGATCGATGCAAGATCTGCAAGAGGGGGACAACAATCAGCCAATGACGCTTACGCCAAGGCGCTTAACAGCGGAAGTAAGTCAGAGGCTCTTATCGTAATTAAGGAATTAGCCCCCAAAGATTTCGTTTTACAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTGCACCTCCTCTAGAGGAATTTGTTTGTCCATTTTTATCGTCTTCGTTCGATCGAGTTCCAGAAGAACTTGAATGCTGGGCTGCCGATAATGTAAGGGATGCCGCTGCGCGGCCATGGAGACCCATAAGTATAGTCATAGAGGGTGAGAGTCGTACAGGGAAGACTATGTGGGCACGGTCACTGGGTCCACATAATTATTTATGTGGGCACCTTGATCTAAGCCCTAAAGTATACAGCAATGATGCGTGGTACAACGTGGTTGATGACGTAGATCCCCACTACCTAAAGCACTTCAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGGAAACCAATTCAAATTAAAGGAGGTATCCCGACAATCTTCCTATGCAATCCTGGACCAACATCATCATATAAAGAGTACTTGGACGAGGATAAGAATTCCGCACTAAAAGCTTGGGCTCTAAAGAATGCAGAATTCATCACCCTCACGGAACCATTGTACTCAAGTACCAATCAAGGTCCAACACAGAATAGCGAAGAAGAGCGTGCGACGCCGGAGAGTTGA |
| Protein Sequence | MTPPKRFQIYAKNYFLTYPQCSLTKEEALSQLQNLQTPTNKKYIKICRELHEDGSPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLEKDGDTIEWGEFQIDARSARGGQQSANDAYAKALNSGSKSEALIVIKELAPKDFVLQFHNLNANLDRIFAPPLEEFVCPFLSSSFDRVPEELECWAADNVRDAAARPWRPISIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVVDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSALKAWALKNAEFITLTEPLYSSTNQGPTQNSEEERATPES |
| NCBI Accession | YP_008060403.1 |
|---|---|
| Location | 2157-2447 |
| Gene Name | AC4 |
| Protein Name | AC4 protein |
| Coding Region | ATGGGTCTCCTCATCTCCACGTGCTTATCCAATTCGAAGGAAAATACAAGTGCCAAAATAACAGATTCTTCGATTTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCATCGAATGGGGAGAGTTTCAGATCGATGCAAGATCTGCAAGAGGGGGACAACAATCAGCCAATGACGCTTACGCCAAGGCGCTTAACAGCGGAAGTAAGTCAGAGGCTCTTATCGTAA |
| Protein Sequence | MGLLISTCLSNSKENTSAKITDSSIWYPQPGQHISIRTYRELNPAPTSSPIWRRTETPSNGESFRSMQDLQEGDNNQPMTLTPRRLTAEVSQRLLS |
References More References in PubMed
| 1 |
Xie Y, et al. Virology. 2024 Jun;594:110040. doi: 10.1016/j.virol.2024.110040. Epub 2024 Mar 5. PMID: 38471198 |
|---|---|
| 2 |
Dufulin Impacts Plant Defense Against Tomato Yellow Leaf Curl Virus Infecting Tomato. Huang L, et al. Viruses. 2024 Dec 31;17(1):53. doi: 10.3390/v17010053. PMID: 39861842 |
| 3 |
First Report of Tomato yellow leaf curl China virus with Betasatellite Infecting Panax notoginseng. Li XJ, et al. Plant Dis. 2014 Sep;98(9):1284. doi: 10.1094/PDIS-03-14-0255-PDN. PMID: 30699620 |
| 4 |
A DNAbeta associated with Tomato yellow leaf curl China virus is required for symptom induction. Cui X, et al. J Virol. 2004 Dec;78(24):13966-74. doi: 10.1128/JVI.78.24.13966-13974.2004. PMID: 15564504 |
| 5 |
Guo W, et al. Virus Genes. 2009 Apr;38(2):328-33. doi: 10.1007/s11262-009-0327-4. Epub 2009 Jan 23. PMID: 19165588 |
| 6 |
Shahid MS, et al. Viruses. 2014 Jan 14;6(1):189-200. doi: 10.3390/v6010189. PMID: 24424499 |
| 7 |
ty-5 Confers Broad-Spectrum Resistance to Geminiviruses. Ren Y, et al. Viruses. 2022 Aug 17;14(8):1804. doi: 10.3390/v14081804. PMID: 36016426 |
| 8 |
Seepiban C, et al. Virol J. 2017 May 30;14(1):99. doi: 10.1186/s12985-017-0763-z. PMID: 28558726 |
| 9 |
Tobacco leaf curl Puer virus: a novel monopartite begomovirus infecting Nicotiana tabacum in China. Jiang N, et al. Arch Virol. 2022 Jan;167(1):229-232. doi: 10.1007/s00705-021-05267-9. Epub 2021 Oct 15. PMID: 34652555 |
| 10 |
Xie Y, et al. Arch Virol. 2003 Oct;148(10):2047-54. doi: 10.1007/s00705-003-0153-2. PMID: 14551824 |