Tomato yellow leaf curl virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000858205.1
Isolate Spain:Almeria
Release date 2015/2/13
Submitter Morilla,G., Janssen,D., Garcia-Andres,S., Moriones,E., Cuadrado,I.M., Bejarano,E.R.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_004005
TAATATTACCGGATGGCCGCGCCTTTTCCTTTTATGTGGTCCCCACGAGGGTTCCACAGACGTCACTGTCAACCAATCAAATTGCATACTCAAACGTTAAATAAGTGTTCATTTGTCTTTATATACTTGGTCCCCAAGTATTTTGTCTTGCAATATGTGGGACCCACTTCTAAATGAATTTCCTGAATCTGTTCACGGATTTCGTTGTATGTTAGCTATTAAATATTTGCAGTCCGTTGAGGAAACTTACGAGCCCAATACATTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTAAGGGCCCGTGACTATGTCGAAGCGACCAGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAAGTCCAGTCTTATGAGCAACGGGATGATATTAAGCACACTGGTATTGTTCGTTGTGTTAGTGATGTTACTCGTGGATCTGGAATTACTCACAGAGTGGGTAAGAGGTTCTGTGTTAAATCGATATATTTTTTAGGTAAAGTCTGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTCATGTTCTTTTTGGTCCGTGATAGAAGGCCCTATGGAAGCAGCCCAATGGATTTTGGACAGGTTTTTAATATGTTCGATAATGAGCCCAGTACCGCAACCGTGAAGAATGATTTGCGTGATAGGTTTCAAGTGATGAGAAAATTTCATGCAACAGTTATTGGTGGGCCCTCTGGAATGAAGGAACAGGCATTAGTTAAGAGATTTTTTAAAATTAACAGTCATGTAACTTATAATCATCAGGAGGCAGCCAAGTACGAGAACCATACTGAAAACGCCTTGTTATTGTATATGGCATGTACGCATGCCTCTAATCCAGTGTATGTAACTATGAAAATACGCATCTATTTCTATGATTCAATATCAAATTAATAAAATTTATATTTTATATCATGAGTTTCTGTTACATTTATTGTGTTTTCAAGTACATCATACAATACATGATCAACTGCTCTGATTACATTGTTAATGGAAATTACACCAAGACTATCTAAATACTTAAGAACTTCATATCTAAATACTCTTAAGAAATGACCAGTCTGAGGCTGTAATGTCGTCCAAATTCGGAAGTTGAGAAAACATTTGTGAATCCCCATTACCTTCCTGATGTTGTGGTTGAATCTTATCTGAATGGAAATGATGTCGTGGTTCATTAGAAATGGCCGCTGGCTGTGTTCTGTTATCTTGAAATAGAGGGGATTGTTTATCTCCCAAATAAAAACGCCATTCTCTGCCTGAGGAGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATTGTTGCAGTTGAGGTGGAGGTAGTATGAGCAGCCACAGTCTAGGTCTACACGCTTACGCCTTATTGGTTTCTTCTTGGCTATCTTGTGTTGGACCTTGATTGATACTTGCGAACAGTGGCTCGTAGAGGGTGACGAAGGTTGCATTCTTGAGCGCCCAATTTTTCAAGGATATATTTTTTTCTTCGTCTAGATATTCCCTATATGAGGAGGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTACTGTACACCTTTGGGCTTAGGTCTAGATGTCCACATAAATAATTATGTGGGCCTAGAGACCTGGCCCACATTGTTTTGCCTGTTCTGCTATCACCCTCAATGACAATACTATTAGGTCTCCATGGCCGCGCAGCGGAAGACACGACGTTCTCAGCGACCCACTCTTCAAGTTCATCTGGAACTTGATTAAAAGAAGAAGAAAGAAATGGAGAAACATAAACTTCTAAAGGAGGACTAAAAATCCTATCTAAATTTGAACTTAAATTATGAAATTGTAAAATATAGTCCTTTGGGGCCTTCTCTTTTAATATATTGAGGGCCTCGGATTTATTGCCTGAATTGAGTGCTTCGGCATATGCGTCGTTGGCAGATTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTCCAAAATCAATGAAGTCTCCGTCTTTCTCCACGTAGGTCTTGACATCTGTTGAGCTCTTAGCTGCCTGAATGTTCGGATGGAAATGTGCTGATCTGTTTGGGGATACCAGGTCGAAGAACCGTTGGTTCTTACATTGGTATTTGCCTTCGAATTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCGTGGAGTTCTCTGCAAACTTTGATGTATTTTTTATTTGTTGGGGTTTCTAGGTTTTTTAATTGGGAAAGTGCTTCCTCTTTAGAGAGAGAACAATTGGGATATGTTAGGAAATAATTTTTGGCATATATTTTAAATAAACGAGGCATGTTGAAATGAATCGGTGTCCCTCAAAGCTCTATGGCAATCGGTGTATCGGTGTCTTATTTATACCTGGACACCTAATGGCTATTTGGTAATTTCGTAAAAGTACATTGCAATTCAAAATTCAAAATTCAAAAATCAAATCATTAAAGCGGCCATCCGTA

Gene Information

NCBI Accession NP_658991.1
Location 155-505
Gene Name v2
Protein Name precoat protein
Coding Region ATGTGGGACCCACTTCTAAATGAATTTCCTGAATCTGTTCACGGATTTCGTTGTATGTTAGCTATTAAATATTTGCAGTCCGTTGAGGAAACTTACGAGCCCAATACATTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTAAGGGCCCGTGACTATGTCGAAGCGACCAGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGA
Protein Sequence MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDLISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHVPKAQNIQNVSKP

NCBI Accession NP_658992.1
Location 315-1091
Gene Name cp
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAAGTCCAGTCTTATGAGCAACGGGATGATATTAAGCACACTGGTATTGTTCGTTGTGTTAGTGATGTTACTCGTGGATCTGGAATTACTCACAGAGTGGGTAAGAGGTTCTGTGTTAAATCGATATATTTTTTAGGTAAAGTCTGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTCATGTTCTTTTTGGTCCGTGATAGAAGGCCCTATGGAAGCAGCCCAATGGATTTTGGACAGGTTTTTAATATGTTCGATAATGAGCCCAGTACCGCAACCGTGAAGAATGATTTGCGTGATAGGTTTCAAGTGATGAGAAAATTTCATGCAACAGTTATTGGTGGGCCCTCTGGAATGAAGGAACAGGCATTAGTTAAGAGATTTTTTAAAATTAACAGTCATGTAACTTATAATCATCAGGAGGCAGCCAAGTACGAGAACCATACTGAAAACGCCTTGTTATTGTATATGGCATGTACGCATGCCTCTAATCCAGTGTATGTAACTATGAAAATACGCATCTATTTCTATGATTCAATATCAAATTAA
Protein Sequence MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSWTYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITHRVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYVTMKIRIYFYDSISN

NCBI Accession NP_658993.1
Location 1088-1492
Gene Name c3
Protein Name C3 protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCTCCTCAGGCAGAGAATGGCGTTTTTATTTGGGAGATAAACAATCCCCTCTATTTCAAGATAACAGAACACAGCCAGCGGCCATTTCTAATGAACCACGACATCATTTCCATTCAGATAAGATTCAACCACAACATCAGGAAGGTAATGGGGATTCACAAATGTTTTCTCAACTTCCGAATTTGGACGACATTACAGCCTCAGACTGGTCATTTCTTAAGAGTATTTAGATATGAAGTTCTTAAGTATTTAGATAGTCTTGGTGTAATTTCCATTAACAATGTAATCAGAGCAGTTGATCATGTATTGTATGATGTACTTGAAAACACAATAAATGTAACAGAAACTCATGATATAAAATATAAATTTTATTAA
Protein Sequence MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDIISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGHFLRVFRYEVLKYLDSLGVISINNVIRAVDHVLYDVLENTINVTETHDIKYKFY

NCBI Accession NP_658994.1
Location 1233-1640
Gene Name c2
Protein Name C2 protein
Coding Region ATGCAACCTTCGTCACCCTCTACGAGCCACTGTTCGCAAGTATCAATCAAGGTCCAACACAAGATAGCCAAGAAGAAACCAATAAGGCGTAAGCGTGTAGACCTAGACTGTGGCTGCTCATACTACCTCCACCTCAACTGCAACAATCATGGATTCACGCACAGGGGAACTCATCACTGCTCCTCAGGCAGAGAATGGCGTTTTTATTTGGGAGATAAACAATCCCCTCTATTTCAAGATAACAGAACACAGCCAGCGGCCATTTCTAATGAACCACGACATCATTTCCATTCAGATAAGATTCAACCACAACATCAGGAAGGTAATGGGGATTCACAAATGTTTTCTCAACTTCCGAATTTGGACGACATTACAGCCTCAGACTGGTCATTTCTTAAGAGTATTTAG
Protein Sequence MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHLNCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPAAISNEPRHHFHSDKIQPQHQEGNGDSQMFSQLPNLDDITASDWSFLKSI

NCBI Accession NP_658995.1
Location 1549-2622
Gene Name rep
Protein Name replication-associated protein
Coding Region ATGCCTCGTTTATTTAAAATATATGCCAAAAATTATTTCCTAACATATCCCAATTGTTCTCTCTCTAAAGAGGAAGCACTTTCCCAATTAAAAAACCTAGAAACCCCAACAAATAAAAAATACATCAAAGTTTGCAGAGAACTCCACGAGAATGGGGAACCACATCTCCATGTGCTTATCCAATTCGAAGGCAAATACCAATGTAAGAACCAACGGTTCTTCGACCTGGTATCCCCAAACAGATCAGCACATTTCCATCCGAACATTCAGGCAGCTAAGAGCTCAACAGATGTCAAGACCTACGTGGAGAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAAGCACTCAATTCAGGCAATAAATCCGAGGCCCTCAATATATTAAAAGAGAAGGCCCCAAAGGACTATATTTTACAATTTCATAATTTAAGTTCAAATTTAGATAGGATTTTTAGTCCTCCTTTAGAAGTTTATGTTTCTCCATTTCTTTCTTCTTCTTTTAATCAAGTTCCAGATGAACTTGAAGAGTGGGTCGCTGAGAACGTCGTGTCTTCCGCTGCGCGGCCATGGAGACCTAATAGTATTGTCATTGAGGGTGATAGCAGAACAGGCAAAACAATGTGGGCCAGGTCTCTAGGCCCACATAATTATTTATGTGGACATCTAGACCTAAGCCCAAAGGTGTACAGTAATGATGCGTGGTACAACGTCATTGATGACGTAGACCCGCATTATTTAAAGCACTTCAAGGAATTCATGGGGGCCCAGAGGGACTGGCAAAGCAACACAAAGTACGGGAAGCCCATTCAAATTAAAGGGGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCTACCTCCTCATATAGGGAATATCTAGACGAAGAAAAAAATATATCCTTGAAAAATTGGGCGCTCAAGAATGCAACCTTCGTCACCCTCTACGAGCCACTGTTCGCAAGTATCAATCAAGGTCCAACACAAGATAGCCAAGAAGAAACCAATAAGGCGTAA
Protein Sequence MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVCRELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEKDGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGNKSEALNILKEKAPKDYILQFHNLSSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPNSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFASINQGPTQDSQEETNKA

NCBI Accession NP_658996.1
Location 2178-2471
Gene Name c4
Protein Name C4 protein
Coding Region ATGGGGAACCACATCTCCATGTGCTTATCCAATTCGAAGGCAAATACCAATGTAAGAACCAACGGTTCTTCGACCTGGTATCCCCAAACAGATCAGCACATTTCCATCCGAACATTCAGGCAGCTAAGAGCTCAACAGATGTCAAGACCTACGTGGAGAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAAGCACTCAATTCAGGCAATAAATCCGAGGCCCTCAATATATTAA
Protein Sequence MGNHISMCLSNSKANTNVRTNGSSTWYPQTDQHISIRTFRQLRAQQMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAINPRPSIY

References More References in PubMed

1

Tomato Yellow Leaf Curl Virus: Impact, Challenges, and Management.

Prasad A, et al.  Trends Plant Sci. 2020 Sep;25(9):897-911. doi: 10.1016/j.tplants.2020.03.015. Epub 2020 May 1.

PMID: 32371058

2

Natural resistance of tomato plants to Tomato yellow leaf curl virus.

H El-Sappah A, et al.  Front Plant Sci. 2022 Dec 19;13:1081549. doi: 10.3389/fpls.2022.1081549. eCollection 2022.

PMID: 36600922

3

A rapid detection of tomato yellow leaf curl virus using recombinase polymerase amplification-lateral flow dipstick assay.

Zhou Y, et al.  Lett Appl Microbiol. 2022 May;74(5):640-646. doi: 10.1111/lam.13611. Epub 2021 Dec 14.

PMID: 34822723

4

Tomato Yellow Leaf Curl Virus (TYLCV) Promotes Plant Tolerance to Drought.

Shteinberg M, et al.  Cells. 2021 Oct 25;10(11):2875. doi: 10.3390/cells10112875.

PMID: 34831098

5

Tomato Yellow Leaf Curl Virus Infection in a Monocotyledonous Weed (Eleusine indica).

Kil EJ, et al.  Plant Pathol J. 2021 Dec;37(6):641-651. doi: 10.5423/PPJ.FT.11.2021.0162. Epub 2021 Dec 1.

PMID: 34897255

6

First Report of Tomato Yellow Leaf Curl Virus Infecting Pepper and Tomato in Oklahoma.

Paslay C, et al.  Plant Dis. 2022 Aug 12. doi: 10.1094/PDIS-04-22-0927-PDN. Online ahead of print.

PMID: 35961018

7

Resistance to Tomato Yellow Leaf Curl Virus in Tomato Germplasm.

Yan Z, et al.  Front Plant Sci. 2018 Aug 20;9:1198. doi: 10.3389/fpls.2018.01198. eCollection 2018.

PMID: 30177938

8

Tomato yellow leaf curl virus, an emerging virus complex causing epidemics worldwide.

Moriones E, et al.  Virus Res. 2000 Nov;71(1-2):123-34. doi: 10.1016/s0168-1702(00)00193-3.

PMID: 11137167

9

First Report of Tomato Yellow Leaf Curl Virus Infecting Upland Cotton (Gossypium hirsutum) in Alabama, USA.

McLaughlin A, et al.  Plant Dis. 2022 Apr 12. doi: 10.1094/PDIS-09-20-2041-PDN. Online ahead of print.

PMID: 35412338

10

Tomato yellow leaf curl virus (TYLCV-IL): a seed-transmissible geminivirus in tomatoes.

Kil EJ, et al.  Sci Rep. 2016 Jan 8;6:19013. doi: 10.1038/srep19013.

PMID: 26743765