Tomato yellow leaf curl Vietnam virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000873945.1 |
| Isolate |
Viet Nam: Hanoi |
| Release date |
2015/2/13 |
| Submitter |
Ha,C., Coombs,S., Revill,P., Harding,R., Vu,M., Dale,J., Ha,C.V., Revill,P.A., Harding,R.M., Vu,M.T., Dale,J.L. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTATGTGGTCCCCCCACTCTTATTTGTCGGCCAATAGAGACGCTCCCTCAGAGCTTATTTATTTAACGGCCCCCTATAAAACTTGGTCCCCAAGTACTCATTTCAAACATGTGGGATCCGCTTTTAAACGAATTTCCCGAAACCGTTCACGGTTTTAGGTGTATGCTAGCGATTAAATATTTGCAATTAGTAGAAAATACATACTCTCCGGATACATTAGGGTACGATTTAATTCGTGATTTAATTTTAGTTATTCGTGCCAGGGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGTCAACCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGTCCCATGTACCGCAAGCCCAAGATGTACAGAATGTACAAAAGCCCTGATGTTCCACGAGGATGTGAAGGCCCATGTAAAGTCCAGTCTTATGAACAGCGTCATGATGTAGCCCATGTAGGGAAGGTAATTTGTGTGTCTGATGTTACACGTGGTAACGGGTTGACTCATCGTGTTGGTAAGAGGTTCTGTATTAAGTCAGTTTATGTTTTGGGTAAGATCTGGATGGATGAGAACATTAAGACGAAGAATCATACTAATACGGTCATGTTCTTTTTAGTACGTGATAGAAGACCTTTTGGAACTCCCCAAGATTTTGGTCAGGTGTTTAACATGTATGATAACGAGCCAAGTACAGCCACCGTGAAGAACGATAACAGAGATCGTTTTCAAGTGCTTCGTCGATTTCAGGCAACTGTTACTGGTGGCCAGTATGCGAGCAAGGAGCAAGCAATAGTTAGGAAGTTTATGAAGGTGAACAACCATGTGACGTATAATCATCAAGAGGCTGCGAAGTATGACAATCACACAGAGAATGCTCTTTTGTTGTATATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACTTTGAAAATCAGAATCTATTTCTATGATTCTGTTCAGAATTAATAAAGATTGAATTTTATTATATTTGAATGTGTTACATATTCTGTGTTTTCCAATACATCCCATAATACATGATCACATGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATCTAAGTATTTCATACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGACGTAAACGAGTCCAGATCTGGAAGATTAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCTTTATGATGTCGTGGTTGGTGTTGAATGGCCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTCCAGGTATACACGCCATTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCATGATTTGCGCAATCTATGCCGAAGTAGTATGAGCACCCGCACGTTAGATCAACTCTCCGTCTCCGAACAGGCCTCTTCTTGGCTATTCTGTGTTGCACTTTGATTGGTACCTGAGTACAATGGGCTGTTGAGGGTGACGAATTCTGCATTCTTTAATGCCCAATCTTTTAAAGCAGAATTTTTATCCTCATTCAAGTACTCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACTTTTGGGCTTAGATCAAGGTGTCCGCATAAATAATTATGTGGGCCTAATGACCTAGCCCACATTGTTTTCCCCGTCCGACTATCCCCTTCGATAACTATACTTATCGGTCGTAAAGGCCGCGCAGCGGAACTGACGACGTTCTCGGCAGCCCACTCCTCGAGTTCTTCTGGGACTCGATCAAAAGAAGAAGAAGAAAAAGGCGAAATATAAACCTCCAATGGAGGTGTAAAAATCCTGTCTAAATTGGCATTTAAATTATGAAACTGTAACACATAATCTTTAGGAGCTAGCTCCTTAATTACATTAAGAGCCTCCGACTTACTGCCTGCGTTAAGCGCCTGGGCGTAAGCGTCGTTGGCTGATTGTTGACCTCCCCTTGCAGATCGTCCGTCGATCTGAAATTCTCCCCATTCAATTGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTCGATTTAGCTCCCTGAATGTTTGGATGGAAATGCGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCTGGCATTTGTATTTCCCTTCGAACTGGACAAGCACGTGGAGATGAGGAGACCCATCTTCGTGAAGCTCTCTGCAGATTTTGATGTATTTTTTATTCGTTGGGGTGTTTAGGTTTTGTAATTGGGAAAGTGCCTCTTCTTTAGTAAGGGAGCATTGTGGATAAGTGAGAAAATAATTCTTGGCATTTATTTGGAAACGCTTTGGGGGTGCCATTGACTTGGTCAATCGGTACTCATCAAACTTCTCTATGCAATTGGGGAATGGTACTCAATATATAGTTGAGTACCAAATGGCATTATCGTAATTCTCAAAGGTAATTTGAAATTCAAATTGGTAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_001285742.1
|
|
Location
|
130-480 |
|
Gene Name
|
AV2 |
|
Protein Name
|
AV2 protein |
|
Coding Region
|
ATGTGGGATCCGCTTTTAAACGAATTTCCCGAAACCGTTCACGGTTTTAGGTGTATGCTAGCGATTAAATATTTGCAATTAGTAGAAAATACATACTCTCCGGATACATTAGGGTACGATTTAATTCGTGATTTAATTTTAGTTATTCGTGCCAGGGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGTCAACCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGTCCCATGTACCGCAAGCCCAAGATGTACAGAATGTACAAAAGCCCTGA |
|
Protein Sequence
|
MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVIRARDYVEASRRYSHFHSRIQGASPAEFRQPVCQPCCCPHCPRHKQKEVMGESSHVPQAQDVQNVQKP |
|
NCBI Accession
|
YP_001285743.1
|
|
Location
|
290-1063 |
|
Gene Name
|
AV1 |
|
Protein Name
|
CP protein |
|
Coding Region
|
ATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGTCAACCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGTCCCATGTACCGCAAGCCCAAGATGTACAGAATGTACAAAAGCCCTGATGTTCCACGAGGATGTGAAGGCCCATGTAAAGTCCAGTCTTATGAACAGCGTCATGATGTAGCCCATGTAGGGAAGGTAATTTGTGTGTCTGATGTTACACGTGGTAACGGGTTGACTCATCGTGTTGGTAAGAGGTTCTGTATTAAGTCAGTTTATGTTTTGGGTAAGATCTGGATGGATGAGAACATTAAGACGAAGAATCATACTAATACGGTCATGTTCTTTTTAGTACGTGATAGAAGACCTTTTGGAACTCCCCAAGATTTTGGTCAGGTGTTTAACATGTATGATAACGAGCCAAGTACAGCCACCGTGAAGAACGATAACAGAGATCGTTTTCAAGTGCTTCGTCGATTTCAGGCAACTGTTACTGGTGGCCAGTATGCGAGCAAGGAGCAAGCAATAGTTAGGAAGTTTATGAAGGTGAACAACCATGTGACGTATAATCATCAAGAGGCTGCGAAGTATGACAATCACACAGAGAATGCTCTTTTGTTGTATATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACTTTGAAAATCAGAATCTATTTCTATGATTCTGTTCAGAATTAA |
|
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYVNRAVAPTVLVTNKRRSWVNRPMYRKPKMYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTHRVGKRFCIKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
|
NCBI Accession
|
YP_001285744.1
|
|
Location
|
1060-1464 |
|
Gene Name
|
AC3 |
|
Protein Name
|
REn protein |
|
Coding Region
|
ATGGATTTTCGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAATGGCGTGTATACCTGGACGATCAAAAATCCCCTATATTTCAAGATAACCAAGCACCACGAGAGGCCATTCAACACCAACCACGACATCATAAAGATCCAAATACAATTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTAATCTTCCAGATCTGGACTCGTTTACGTCCTCAGACTTGGCGTTTCTTAAGAGTATTTAGGGTTCAATGTATGAAATACTTAGATAATTTGGGTGTAATTAGTATTAACAATGTAATTAGAGCATGTGATCATGTATTATGGGATGTATTGGAAAACACAGAATATGTAACACATTCAAATATAATAAAATTCAATCTTTATTAA |
|
Protein Sequence
|
MDFRTGELLTATQCENGVYTWTIKNPLYFKITKHHERPFNTNHDIIKIQIQFNHNLRKALGIHQCFLIFQIWTRLRPQTWRFLRVFRVQCMKYLDNLGVISINNVIRACDHVLWDVLENTEYVTHSNIIKFNLY |
|
NCBI Accession
|
YP_001285745.1
|
|
Location
|
1205-1612 |
|
Gene Name
|
AC2 |
|
Protein Name
|
TrAP protein |
|
Coding Region
|
ATGCAGAATTCGTCACCCTCAACAGCCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAAGAGGCCTGTTCGGAGACGGAGAGTTGATCTAACGTGCGGGTGCTCATACTACTTCGGCATAGATTGCGCAAATCATGGATTTTCGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAATGGCGTGTATACCTGGACGATCAAAAATCCCCTATATTTCAAGATAACCAAGCACCACGAGAGGCCATTCAACACCAACCACGACATCATAAAGATCCAAATACAATTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTAATCTTCCAGATCTGGACTCGTTTACGTCCTCAGACTTGGCGTTTCTTAAGAGTATTTAG |
|
Protein Sequence
|
MQNSSPSTAHCTQVPIKVQHRIAKKRPVRRRRVDLTCGCSYYFGIDCANHGFSHRGITHCNSMREWRVYLDDQKSPIFQDNQAPREAIQHQPRHHKDPNTIQPQPEESVGNTPVFSNLPDLDSFTSSDLAFLKSI |
|
NCBI Accession
|
YP_001285746.1
|
|
Location
|
1512-2600 |
|
Gene Name
|
AC1 |
|
Protein Name
|
rep protein |
|
Coding Region
|
ATGGCACCCCCAAAGCGTTTCCAAATAAATGCCAAGAATTATTTTCTCACTTATCCACAATGCTCCCTTACTAAAGAAGAGGCACTTTCCCAATTACAAAACCTAAACACCCCAACGAATAAAAAATACATCAAAATCTGCAGAGAGCTTCACGAAGATGGGTCTCCTCATCTCCACGTGCTTGTCCAGTTCGAAGGGAAATACAAATGCCAGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCGCATTTCCATCCAAACATTCAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACAATTGAATGGGGAGAATTTCAGATCGACGGACGATCTGCAAGGGGAGGTCAACAATCAGCCAACGACGCTTACGCCCAGGCGCTTAACGCAGGCAGTAAGTCGGAGGCTCTTAATGTAATTAAGGAGCTAGCTCCTAAAGATTATGTGTTACAGTTTCATAATTTAAATGCCAATTTAGACAGGATTTTTACACCTCCATTGGAGGTTTATATTTCGCCTTTTTCTTCTTCTTCTTTTGATCGAGTCCCAGAAGAACTCGAGGAGTGGGCTGCCGAGAACGTCGTCAGTTCCGCTGCGCGGCCTTTACGACCGATAAGTATAGTTATCGAAGGGGATAGTCGGACGGGGAAAACAATGTGGGCTAGGTCATTAGGCCCACATAATTATTTATGCGGACACCTTGATCTAAGCCCAAAAGTATACAGTAATGATGCTTGGTATAACGTCATTGATGACGTAGATCCCCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACTAAGTACGGGAAACCAATTCAAATTAAAGGTGGAATCCCAACTATCTTCCTTTGCAATCCAGGCCCAACATCATCATATAAAGAGTACTTGAATGAGGATAAAAATTCTGCTTTAAAAGATTGGGCATTAAAGAATGCAGAATTCGTCACCCTCAACAGCCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAAGAGGCCTGTTCGGAGACGGAGAGTTGA |
|
Protein Sequence
|
MAPPKRFQINAKNYFLTYPQCSLTKEEALSQLQNLNTPTNKKYIKICRELHEDGSPHLHVLVQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTIEWGEFQIDGRSARGGQQSANDAYAQALNAGSKSEALNVIKELAPKDYVLQFHNLNANLDRIFTPPLEVYISPFSSSSFDRVPEELEEWAAENVVSSAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLNEDKNSALKDWALKNAEFVTLNSPLYSGTNQSATQNSQEEACSETES |
|
NCBI Accession
|
YP_001285747.1
|
|
Location
|
2153-2443 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGTCTCCTCATCTCCACGTGCTTGTCCAGTTCGAAGGGAAATACAAATGCCAGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCGCATTTCCATCCAAACATTCAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACAATTGAATGGGGAGAATTTCAGATCGACGGACGATCTGCAAGGGGAGGTCAACAATCAGCCAACGACGCTTACGCCCAGGCGCTTAACGCAGGCAGTAAGTCGGAGGCTCTTAATGTAA |
|
Protein Sequence
|
MGLLISTCLSSSKGNTNARITDSSTWYPQPGQRISIQTFRELNRAPTSSPTSTRTETQLNGENFRSTDDLQGEVNNQPTTLTPRRLTQAVSRRLLM |