Tomato yellow leaf curl Vietnam virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000873945.1
Isolate Viet Nam: Hanoi
Release date 2015/2/13
Submitter Ha,C., Coombs,S., Revill,P., Harding,R., Vu,M., Dale,J., Ha,C.V., Revill,P.A., Harding,R.M., Vu,M.T., Dale,J.L.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_009548
ACCGGATGGCCGCGATTTTTTTTATGTGGTCCCCCCACTCTTATTTGTCGGCCAATAGAGACGCTCCCTCAGAGCTTATTTATTTAACGGCCCCCTATAAAACTTGGTCCCCAAGTACTCATTTCAAACATGTGGGATCCGCTTTTAAACGAATTTCCCGAAACCGTTCACGGTTTTAGGTGTATGCTAGCGATTAAATATTTGCAATTAGTAGAAAATACATACTCTCCGGATACATTAGGGTACGATTTAATTCGTGATTTAATTTTAGTTATTCGTGCCAGGGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGTCAACCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGTCCCATGTACCGCAAGCCCAAGATGTACAGAATGTACAAAAGCCCTGATGTTCCACGAGGATGTGAAGGCCCATGTAAAGTCCAGTCTTATGAACAGCGTCATGATGTAGCCCATGTAGGGAAGGTAATTTGTGTGTCTGATGTTACACGTGGTAACGGGTTGACTCATCGTGTTGGTAAGAGGTTCTGTATTAAGTCAGTTTATGTTTTGGGTAAGATCTGGATGGATGAGAACATTAAGACGAAGAATCATACTAATACGGTCATGTTCTTTTTAGTACGTGATAGAAGACCTTTTGGAACTCCCCAAGATTTTGGTCAGGTGTTTAACATGTATGATAACGAGCCAAGTACAGCCACCGTGAAGAACGATAACAGAGATCGTTTTCAAGTGCTTCGTCGATTTCAGGCAACTGTTACTGGTGGCCAGTATGCGAGCAAGGAGCAAGCAATAGTTAGGAAGTTTATGAAGGTGAACAACCATGTGACGTATAATCATCAAGAGGCTGCGAAGTATGACAATCACACAGAGAATGCTCTTTTGTTGTATATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACTTTGAAAATCAGAATCTATTTCTATGATTCTGTTCAGAATTAATAAAGATTGAATTTTATTATATTTGAATGTGTTACATATTCTGTGTTTTCCAATACATCCCATAATACATGATCACATGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATCTAAGTATTTCATACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGACGTAAACGAGTCCAGATCTGGAAGATTAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCTTTATGATGTCGTGGTTGGTGTTGAATGGCCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTCCAGGTATACACGCCATTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCATGATTTGCGCAATCTATGCCGAAGTAGTATGAGCACCCGCACGTTAGATCAACTCTCCGTCTCCGAACAGGCCTCTTCTTGGCTATTCTGTGTTGCACTTTGATTGGTACCTGAGTACAATGGGCTGTTGAGGGTGACGAATTCTGCATTCTTTAATGCCCAATCTTTTAAAGCAGAATTTTTATCCTCATTCAAGTACTCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACTTTTGGGCTTAGATCAAGGTGTCCGCATAAATAATTATGTGGGCCTAATGACCTAGCCCACATTGTTTTCCCCGTCCGACTATCCCCTTCGATAACTATACTTATCGGTCGTAAAGGCCGCGCAGCGGAACTGACGACGTTCTCGGCAGCCCACTCCTCGAGTTCTTCTGGGACTCGATCAAAAGAAGAAGAAGAAAAAGGCGAAATATAAACCTCCAATGGAGGTGTAAAAATCCTGTCTAAATTGGCATTTAAATTATGAAACTGTAACACATAATCTTTAGGAGCTAGCTCCTTAATTACATTAAGAGCCTCCGACTTACTGCCTGCGTTAAGCGCCTGGGCGTAAGCGTCGTTGGCTGATTGTTGACCTCCCCTTGCAGATCGTCCGTCGATCTGAAATTCTCCCCATTCAATTGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTCGATTTAGCTCCCTGAATGTTTGGATGGAAATGCGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCTGGCATTTGTATTTCCCTTCGAACTGGACAAGCACGTGGAGATGAGGAGACCCATCTTCGTGAAGCTCTCTGCAGATTTTGATGTATTTTTTATTCGTTGGGGTGTTTAGGTTTTGTAATTGGGAAAGTGCCTCTTCTTTAGTAAGGGAGCATTGTGGATAAGTGAGAAAATAATTCTTGGCATTTATTTGGAAACGCTTTGGGGGTGCCATTGACTTGGTCAATCGGTACTCATCAAACTTCTCTATGCAATTGGGGAATGGTACTCAATATATAGTTGAGTACCAAATGGCATTATCGTAATTCTCAAAGGTAATTTGAAATTCAAATTGGTAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_001285742.1
Location 130-480
Gene Name AV2
Protein Name AV2 protein
Coding Region ATGTGGGATCCGCTTTTAAACGAATTTCCCGAAACCGTTCACGGTTTTAGGTGTATGCTAGCGATTAAATATTTGCAATTAGTAGAAAATACATACTCTCCGGATACATTAGGGTACGATTTAATTCGTGATTTAATTTTAGTTATTCGTGCCAGGGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGTCAACCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGTCCCATGTACCGCAAGCCCAAGATGTACAGAATGTACAAAAGCCCTGA
Protein Sequence MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVIRARDYVEASRRYSHFHSRIQGASPAEFRQPVCQPCCCPHCPRHKQKEVMGESSHVPQAQDVQNVQKP

NCBI Accession YP_001285743.1
Location 290-1063
Gene Name AV1
Protein Name CP protein
Coding Region ATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGTCAACCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGTCCCATGTACCGCAAGCCCAAGATGTACAGAATGTACAAAAGCCCTGATGTTCCACGAGGATGTGAAGGCCCATGTAAAGTCCAGTCTTATGAACAGCGTCATGATGTAGCCCATGTAGGGAAGGTAATTTGTGTGTCTGATGTTACACGTGGTAACGGGTTGACTCATCGTGTTGGTAAGAGGTTCTGTATTAAGTCAGTTTATGTTTTGGGTAAGATCTGGATGGATGAGAACATTAAGACGAAGAATCATACTAATACGGTCATGTTCTTTTTAGTACGTGATAGAAGACCTTTTGGAACTCCCCAAGATTTTGGTCAGGTGTTTAACATGTATGATAACGAGCCAAGTACAGCCACCGTGAAGAACGATAACAGAGATCGTTTTCAAGTGCTTCGTCGATTTCAGGCAACTGTTACTGGTGGCCAGTATGCGAGCAAGGAGCAAGCAATAGTTAGGAAGTTTATGAAGGTGAACAACCATGTGACGTATAATCATCAAGAGGCTGCGAAGTATGACAATCACACAGAGAATGCTCTTTTGTTGTATATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACTTTGAAAATCAGAATCTATTTCTATGATTCTGTTCAGAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYVNRAVAPTVLVTNKRRSWVNRPMYRKPKMYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTHRVGKRFCIKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN

NCBI Accession YP_001285744.1
Location 1060-1464
Gene Name AC3
Protein Name REn protein
Coding Region ATGGATTTTCGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAATGGCGTGTATACCTGGACGATCAAAAATCCCCTATATTTCAAGATAACCAAGCACCACGAGAGGCCATTCAACACCAACCACGACATCATAAAGATCCAAATACAATTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTAATCTTCCAGATCTGGACTCGTTTACGTCCTCAGACTTGGCGTTTCTTAAGAGTATTTAGGGTTCAATGTATGAAATACTTAGATAATTTGGGTGTAATTAGTATTAACAATGTAATTAGAGCATGTGATCATGTATTATGGGATGTATTGGAAAACACAGAATATGTAACACATTCAAATATAATAAAATTCAATCTTTATTAA
Protein Sequence MDFRTGELLTATQCENGVYTWTIKNPLYFKITKHHERPFNTNHDIIKIQIQFNHNLRKALGIHQCFLIFQIWTRLRPQTWRFLRVFRVQCMKYLDNLGVISINNVIRACDHVLWDVLENTEYVTHSNIIKFNLY

NCBI Accession YP_001285745.1
Location 1205-1612
Gene Name AC2
Protein Name TrAP protein
Coding Region ATGCAGAATTCGTCACCCTCAACAGCCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAAGAGGCCTGTTCGGAGACGGAGAGTTGATCTAACGTGCGGGTGCTCATACTACTTCGGCATAGATTGCGCAAATCATGGATTTTCGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAATGGCGTGTATACCTGGACGATCAAAAATCCCCTATATTTCAAGATAACCAAGCACCACGAGAGGCCATTCAACACCAACCACGACATCATAAAGATCCAAATACAATTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTAATCTTCCAGATCTGGACTCGTTTACGTCCTCAGACTTGGCGTTTCTTAAGAGTATTTAG
Protein Sequence MQNSSPSTAHCTQVPIKVQHRIAKKRPVRRRRVDLTCGCSYYFGIDCANHGFSHRGITHCNSMREWRVYLDDQKSPIFQDNQAPREAIQHQPRHHKDPNTIQPQPEESVGNTPVFSNLPDLDSFTSSDLAFLKSI

NCBI Accession YP_001285746.1
Location 1512-2600
Gene Name AC1
Protein Name rep protein
Coding Region ATGGCACCCCCAAAGCGTTTCCAAATAAATGCCAAGAATTATTTTCTCACTTATCCACAATGCTCCCTTACTAAAGAAGAGGCACTTTCCCAATTACAAAACCTAAACACCCCAACGAATAAAAAATACATCAAAATCTGCAGAGAGCTTCACGAAGATGGGTCTCCTCATCTCCACGTGCTTGTCCAGTTCGAAGGGAAATACAAATGCCAGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCGCATTTCCATCCAAACATTCAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACAATTGAATGGGGAGAATTTCAGATCGACGGACGATCTGCAAGGGGAGGTCAACAATCAGCCAACGACGCTTACGCCCAGGCGCTTAACGCAGGCAGTAAGTCGGAGGCTCTTAATGTAATTAAGGAGCTAGCTCCTAAAGATTATGTGTTACAGTTTCATAATTTAAATGCCAATTTAGACAGGATTTTTACACCTCCATTGGAGGTTTATATTTCGCCTTTTTCTTCTTCTTCTTTTGATCGAGTCCCAGAAGAACTCGAGGAGTGGGCTGCCGAGAACGTCGTCAGTTCCGCTGCGCGGCCTTTACGACCGATAAGTATAGTTATCGAAGGGGATAGTCGGACGGGGAAAACAATGTGGGCTAGGTCATTAGGCCCACATAATTATTTATGCGGACACCTTGATCTAAGCCCAAAAGTATACAGTAATGATGCTTGGTATAACGTCATTGATGACGTAGATCCCCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACTAAGTACGGGAAACCAATTCAAATTAAAGGTGGAATCCCAACTATCTTCCTTTGCAATCCAGGCCCAACATCATCATATAAAGAGTACTTGAATGAGGATAAAAATTCTGCTTTAAAAGATTGGGCATTAAAGAATGCAGAATTCGTCACCCTCAACAGCCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAAGAGGCCTGTTCGGAGACGGAGAGTTGA
Protein Sequence MAPPKRFQINAKNYFLTYPQCSLTKEEALSQLQNLNTPTNKKYIKICRELHEDGSPHLHVLVQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTIEWGEFQIDGRSARGGQQSANDAYAQALNAGSKSEALNVIKELAPKDYVLQFHNLNANLDRIFTPPLEVYISPFSSSSFDRVPEELEEWAAENVVSSAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLNEDKNSALKDWALKNAEFVTLNSPLYSGTNQSATQNSQEEACSETES

NCBI Accession YP_001285747.1
Location 2153-2443
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGTCTCCTCATCTCCACGTGCTTGTCCAGTTCGAAGGGAAATACAAATGCCAGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCGCATTTCCATCCAAACATTCAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACAATTGAATGGGGAGAATTTCAGATCGACGGACGATCTGCAAGGGGAGGTCAACAATCAGCCAACGACGCTTACGCCCAGGCGCTTAACGCAGGCAGTAAGTCGGAGGCTCTTAATGTAA
Protein Sequence MGLLISTCLSSSKGNTNARITDSSTWYPQPGQRISIQTFRELNRAPTSSPTSTRTETQLNGENFRSTDDLQGEVNNQPTTLTPRRLTQAVSRRLLM

References More References in PubMed

1

Tomato yellow leaf curl viruses: ménage à trois between the virus complex, the plant and the whitefly vector.

Díaz-Pendón JA, et al.  Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x.

PMID: 20618703

2

First Report of Tomato yellow leaf curl Kanchanaburi virus Infecting Eggplant in Laos.

Tang YF, et al.  Plant Dis. 2014 Mar;98(3):428. doi: 10.1094/PDIS-07-13-0696-PDN.

PMID: 30708424

3

Tobacco leaf curl Puer virus: a novel monopartite begomovirus infecting Nicotiana tabacum in China.

Jiang N, et al.  Arch Virol. 2022 Jan;167(1):229-232. doi: 10.1007/s00705-021-05267-9. Epub 2021 Oct 15.

PMID: 34652555

4

Transreplication of a Tomato yellow leaf curl Thailand virus DNA-B and replication of a DNAbeta component by Tomato leaf curl Vietnam virus and Tomato yellow leaf curl Vietnam virus.

Blawid R, et al.  Virus Res. 2008 Sep;136(1-2):107-17. doi: 10.1016/j.virusres.2008.04.025. Epub 2008 Jun 11.

PMID: 18550192

5

Emergence of Asian endemic begomoviruses as a pandemic threat.

Qureshi MA, et al.  Front Plant Sci. 2022 Sep 28;13:970941. doi: 10.3389/fpls.2022.970941. eCollection 2022.

PMID: 36247535

6

Emergence and diversity of begomoviruses infecting solanaceous crops in East and Southeast Asia.

Kenyon L, et al.  Virus Res. 2014 Jun 24;186:104-13. doi: 10.1016/j.virusres.2013.12.026. Epub 2014 Jan 15.

PMID: 24440320

7

A novel East African monopartite begomovirus-betasatellite complex that infects Vernonia amygdalina.

Mollel HG, et al.  Arch Virol. 2017 Apr;162(4):1079-1082. doi: 10.1007/s00705-016-3175-2. Epub 2016 Nov 29.

PMID: 27900540

8

Molecular Characterization of Begomoviruses Associated with Leafcurl Diseases of Tomato in Bangladesh, Laos, Malaysia, Myanmar, and Vietnam.

Green SK, et al.  Plant Dis. 2001 Dec;85(12):1286. doi: 10.1094/PDIS.2001.85.12.1286A.

PMID: 30831796

9

Isolation and molecular characterization of a distinct begomovirus and its associated betasatellite infecting Hedyotis uncinella (Hook. et Arn.) in Vietnam.

Du Z, et al.  Virus Genes. 2014 Jun;48(3):557-61. doi: 10.1007/s11262-014-1043-2. Epub 2014 Feb 8.

PMID: 24510306