Tomato yellow leaf curl Shuangbai virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_001634615.1 |
| Isolate |
China |
| Release date |
2016/5/1 |
| Submitter |
Zhao,L.L., Ding,M., Yin,Y.Y., Zhang,X.Y., Zhang,Z.K. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTAAAGTGGGCCCCTTGATGTGATATGTCATTCAATCAGAACGCTCCCCCAAAGCTTAATTGTTTTGTGGTCCCTTATTTAAACTTGCTCACCAAGTAGTGCACTCCGCACTATGTGGGATCCATTAGTGAACGAGTTTCCCGAAACTGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATTCGCCTGACACATTAGGTCACGATTTAATTAGGGATTTAATTTCCGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGACATGATATTCAGCATATAGGTAAAGTCATGTGTGTTAGTGATGTTACGCGTGGAACTGGGCTGACCCACCGAGTGGGTAAAAGGTTTTGTGTGAAATCCGTTTATGTCTTGGGTAAGATCTGGATGGACGAGAATATTAAGACCAAAAATCACACGAATAGTGTGATGTTTTTTTTAGTTAGGGATCGTAGACCTGTGGATAAACCTCAAGATTTTGGGGAGGTTTTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTTCTTCGGAAATGGCATGCAACTGTGACTGGTGGACAATATGCGTCAAAGGAACAAGCTCTCGTGAAGAAATTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCAGTGTATGCTACTTTGAAGATCAGAATCTATTTCTATGATTCTGTAACAAATTAATAAAGATTGAATTTTATTATATGAGAATGTGTTACATATTCTGTGTTTTGCAATACATCCCATAATACATGATTACACGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATCTAAATATTTCATACATTGAACCCTAAATACTCTTAAGAAATGCCAAGTCTGAGGACGTAAACGAGTCCAGATCTGGAAGATTAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTGTTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTCCAGGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCATGATTTGCACAATCTATGCCGAAGTAGTACGAACACCCGCACGTTAGATCAACTCTCCGCCTGCGAACTGGCCTCCTCTTGGCTATTCTGTGTTGCACTTTGATTGGTACCTGAGTACAATGGGTTGTTGATGGTGATGAATTCTGCATTCTTTATAGCCCAATCTTTTAATGCTGAATTTTTATCTTCATTCAAGTACTCTTTATATGATGATGTTGGTCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACTTTTGGGCTTAGATCAAGATGTCCACACAAATAATTGTGAGGTCCCAGTGATCTGGCCCACATTGTTTTACCCGTACGACTATCACCTTCAATTACTATACTTTTGGGTCTCCATGGCCGCGCAGCGGCACTGACGACATTCTCGGCAGCCCATTTCTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGATAAAAAAGGACAAACAAAAACCTCTATAGGAGGGGCAAAAATCCTATCTAAATTAGAATTTAAATTATGATATTGTAAAACATAATCCTTAGGGGCTAATTCCTTAAGTACGTTGAGAGCCTCCGATTTACTTCCGCTGTTAAGTGCCTTGGCGTAAGCGTCGTTGGCTGATTGTTGACCCCCTCTTGCCGATCTTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTATCCAGATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCATCTGTACTTACCTTCGAACTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGCTCTCTGCAGATTTTAATATATTTTTTATTTGTAGGTGTAACTAGGTTTTGTAATTGGGAAAGTGCTTCCTCTTTAGTAAGAGAACATTGTGGATAAGTAAGGAAATAGTGTTTTGCATTTAATTGGAAACGCTTAGGAGGAGCCATTGACTTGGTCAATTGGTACCAATTGGGGTTCTGGCACTTACTCCCCGTATATGGGTAGCAATATATAGTCTGGTACCAAATGGCATAACTGTAATTCCTAAAGAAATTCAAAATTCAAATCCTAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_009249833.1
|
|
Location
|
134-490 |
|
Protein Name
|
AV2 protein |
|
Coding Region
|
ATGTGGGATCCATTAGTGAACGAGTTTCCCGAAACTGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATTCGCCTGACACATTAGGTCACGATTTAATTAGGGATTTAATTTCCGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAG |
|
Protein Sequence
|
MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGHDLIRDLISVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQKAQDVQDVQKSRCP |
|
NCBI Accession
|
YP_009249834.1
|
|
Location
|
294-1064 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGACATGATATTCAGCATATAGGTAAAGTCATGTGTGTTAGTGATGTTACGCGTGGAACTGGGCTGACCCACCGAGTGGGTAAAAGGTTTTGTGTGAAATCCGTTTATGTCTTGGGTAAGATCTGGATGGACGAGAATATTAAGACCAAAAATCACACGAATAGTGTGATGTTTTTTTTAGTTAGGGATCGTAGACCTGTGGATAAACCTCAAGATTTTGGGGAGGTTTTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTTCTTCGGAAATGGCATGCAACTGTGACTGGTGGACAATATGCGTCAAAGGAACAAGCTCTCGTGAAGAAATTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCAGTGTATGCTACTTTGAAGATCAGAATCTATTTCTATGATTCTGTAACAAATTAA |
|
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
|
NCBI Accession
|
YP_009249835.1
|
|
Location
|
1061-1465 |
|
Protein Name
|
AC3 protein |
|
Coding Region
|
ATGGATTTTCGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACCTGGACGATCAAAAATCCCCTATATTTCAAGATAACCAAGCACCACGAGAGACCATTCAACACCAACCACGACATCATAACGATCCAAATACAATTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTAATCTTCCAGATCTGGACTCGTTTACGTCCTCAGACTTGGCATTTCTTAAGAGTATTTAGGGTTCAATGTATGAAATATTTAGATAATTTGGGTGTAATTAGTATTAACAATGTAATTAGAGCGTGTAATCATGTATTATGGGATGTATTGCAAAACACAGAATATGTAACACATTCTCATATAATAAAATTCAATCTTTATTAA |
|
Protein Sequence
|
MDFRTGELLTATQCESGVYTWTIKNPLYFKITKHHERPFNTNHDIITIQIQFNHNLRKALGIHQCFLIFQIWTRLRPQTWHFLRVFRVQCMKYLDNLGVISINNVIRACNHVLWDVLQNTEYVTHSHIIKFNLY |
|
NCBI Accession
|
YP_009249836.1
|
|
Location
|
1206-1613 |
|
Protein Name
|
AC2 protein |
|
Coding Region
|
ATGCAGAATTCATCACCATCAACAACCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAGGAGGCCAGTTCGCAGGCGGAGAGTTGATCTAACGTGCGGGTGTTCGTACTACTTCGGCATAGATTGTGCAAATCATGGATTTTCGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACCTGGACGATCAAAAATCCCCTATATTTCAAGATAACCAAGCACCACGAGAGACCATTCAACACCAACCACGACATCATAACGATCCAAATACAATTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTAATCTTCCAGATCTGGACTCGTTTACGTCCTCAGACTTGGCATTTCTTAAGAGTATTTAG |
|
Protein Sequence
|
MQNSSPSTTHCTQVPIKVQHRIAKRRPVRRRRVDLTCGCSYYFGIDCANHGFSHRGITHCNSMREWRVYLDDQKSPIFQDNQAPRETIQHQPRHHNDPNTIQPQPEESVGNTPVFSNLPDLDSFTSSDLAFLKSI |
|
NCBI Accession
|
YP_009249837.1
|
|
Location
|
1513-2601 |
|
Protein Name
|
rep protein |
|
Coding Region
|
ATGGCTCCTCCTAAGCGTTTCCAATTAAATGCAAAACACTATTTCCTTACTTATCCACAATGTTCTCTTACTAAAGAGGAAGCACTTTCCCAATTACAAAACCTAGTTACACCTACAAATAAAAAATATATTAAAATCTGCAGAGAGCTTCACGAAGATGGGAGCCCTCATCTCCACGTGCTTATCCAGTTCGAAGGTAAGTACAGATGCACGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATCTGGATAAGGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGATGGAAGATCGGCAAGAGGGGGTCAACAATCAGCCAACGACGCTTACGCCAAGGCACTTAACAGCGGAAGTAAATCGGAGGCTCTCAACGTACTTAAGGAATTAGCCCCTAAGGATTATGTTTTACAATATCATAATTTAAATTCTAATTTAGATAGGATTTTTGCCCCTCCTATAGAGGTTTTTGTTTGTCCTTTTTTATCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGAGAAATGGGCTGCCGAGAATGTCGTCAGTGCCGCTGCGCGGCCATGGAGACCCAAAAGTATAGTAATTGAAGGTGATAGTCGTACGGGTAAAACAATGTGGGCCAGATCACTGGGACCTCACAATTATTTGTGTGGACATCTTGATCTAAGCCCAAAAGTATACAGTAATGATGCTTGGTATAACGTCATTGATGACGTCGATCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGGAAACCAATTCAAATTAAAGGTGGAATCCCAACTATCTTCCTTTGCAATCCAGGACCAACATCATCATATAAAGAGTACTTGAATGAAGATAAAAATTCAGCATTAAAAGATTGGGCTATAAAGAATGCAGAATTCATCACCATCAACAACCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAGGAGGCCAGTTCGCAGGCGGAGAGTTGA |
|
Protein Sequence
|
MAPPKRFQLNAKHYFLTYPQCSLTKEEALSQLQNLVTPTNKKYIKICRELHEDGSPHLHVLIQFEGKYRCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLDKDGDTLEWGEFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVLKELAPKDYVLQYHNLNSNLDRIFAPPIEVFVCPFLSSSFDQVPEELEKWAAENVVSAAARPWRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLNEDKNSALKDWAIKNAEFITINNPLYSGTNQSATQNSQEEASSQAES |
|
NCBI Accession
|
YP_009249838.1
|
|
Location
|
2142-2444 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGAGCCCTCATCTCCACGTGCTTATCCAGTTCGAAGGTAAGTACAGATGCACGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATCTGGATAAGGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGATGGAAGATCGGCAAGAGGGGGTCAACAATCAGCCAACGACGCTTACGCCAAGGCACTTAACAGCGGAAGTAAATCGGAGGCTCTCAACGTACTTAAGGAATTAG |
|
Protein Sequence
|
MGALISTCLSSSKVSTDARITDSSTWYPQPGQHISIRTFRELNPAPTSSPIWIRTETPSNGESFRSMEDRQEGVNNQPTTLTPRHLTAEVNRRLSTYLRN |